Causes and consequences of sex-chromosome turnovers in Diptera
Authors: Lorena Layana (1), Melissa A. Toups (2) and Beatriz Vicoso (1)
(1) Institute of Science and Technology Austria
(2) University of Louisiana Lafayette, Department of Biology


This entry contains three zip files. 1) Perl scripts used as part of our pipeline to find homologs, 2) supplementary datasets (1-7) with files generated from our analysis, and 3) supplementary tables S1, S2, S5 and S6. Pipelines are available at https://git.ista.ac.at/llayanaf/transitions_diptera.


List of files and directories in each zip file:


Perl_scripts.zip: 
1-besthitblat.pl
2-redremov_blat_V2.pl
getlongestCDS_v2.pl 


Supplementary_Datasets.zip:
Dataset_1_Heatmaps_ME_enrichment
Dataset_2_Graphical_representation_outgroups
Dataset_3_Gene_counts_in_outgroups
Dataset_4_Proportion_on_F_%onFhomolog.pdf
Dataset_5_GC_content_estimation.pdf
Dataset_6_Expression_values_Out_of_X_FlyAtlas2.xlsx
Dataset_7_D_melanogaster_ genes_in_outgroups


Supplementary_Tables.zip:
Table_S1_List_species_citations.pdf
Table_S2_Enrichment_ME_p_values.pdf
Table_S5_AncestralX_genes_Calyptratae.pdf
Table_S6_OutOfX_Computations.xlsx