Bett, V. K., Macon, A., Vicoso, B., &; Elkrewi, M. N. (2024). Chromosome-level assembly of Artemia franciscana sheds light on sex chromosome differentiation. Genome Biology and Evolution. Oxford University Press.https://doi.org/10.1093/gbe/evae006 

Elkrewi, M. N. (2024). Data from “Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.”https://doi.org/10.15479/AT:ISTA:14705__Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:14705 

De Jode, A., Le Moan, A., Johannesson, K., Faria, R., Stankowski, S., Westram, A. M.,https://doi.org/10.1111/eva.13428__Fraisse, C. (2023). Ten years of demographic modelling of divergence and speciation in the sea. Evolutionary Applications. Wiley.https://doi.org/10.1111/eva.13428 

de Castro Barbosa Rodrigues Barata, C., Snook, R. R., Ritchie, M. G., &; Kosiol, C. (2023). Selection on the fly: Short-term adaptation to an altered sexual selection regime in Drosophila pseudoobscura. Genome Biology and Evolution. Oxford Academic.https://doi.org/10.1093/gbe/evad113 

Mrnjavac, A., Khudiakova, K., Barton, N. H., &; Vicoso, B. (2023). Slower-X: Reduced efficiency of selection in the early stages of X chromosome evolution. Evolution Letters. Oxford University Press.https://doi.org/10.1093/evlett/qrac004 

Toups, M. A., &; Vicoso, B. (2023). The X chromosome of insects likely predates the origin of class Insecta. Evolution. Oxford University Press.https://doi.org/10.1093/evolut/qpad169 

Toups, M. A., &; Vicoso, B. (2023). The X chromosome of insects likely predates the origin of Class Insecta. Dryad.https://doi.org/10.5061/DRYAD.HX3FFBGKT 

Toups, M. A., &; Vicoso, B. (2023). The X chromosome of insects likely predates the origin of Class Insecta. Zenodo.https://doi.org/10.5281/ZENODO.8138705 

Puixeu Sala, G. (2023). The molecular basis of sexual dimorphism: Experimental and theoretical characterization of phenotypic, transcriptomic and genetic patterns of sex-specific adaptation. Institute of Science and Technology Austria.https://doi.org/10.15479/at:ista:14058 

Puixeu Sala, G., Macon, A., &; Vicoso, B. (2023). Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster. : Genes, Genomes, Genetics. Oxford University Press.https://doi.org/10.1093/g3journal/jkad121 

Puixeu Sala, G. (2023). Data from: Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster. Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:12933 

Lucek, K., Giménez, M. D., Joron, M., Rafajlovi, M., Searle, J. B., Walden, N.,https://doi.org/10.1101/cshperspect.a041447__Faria, R. (2023). The impact of chromosomal rearrangements in speciation: From micro- to macroevolution. Cold Spring Harbor Perspectives in Biology. Cold Spring Harbor Laboratory.https://doi.org/10.1101/cshperspect.a041447 

Lasne, C., Elkrewi, M. N., Toups, M. A., Layana Franco, L. A., Macon, A., &; Vicoso, B. (2023). The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome. Molecular Biology and Evolution. Oxford University Press.https://doi.org/10.1093/molbev/msad245 

Lasne, C., &; Elkrewi, M. N. (2023). The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome. Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:14614 

Kelemen, R. K., Elkrewi, M. N., Lindholm, A. K., &; Vicoso, B. (2022). Novel patterns of expression and recruitment of new genes on the t-haplotype, a mouse selfish chromosome. Proceedings of the Royal Society B: Biological Sciences. The Royal Society.https://doi.org/10.1098/rspb.2021.1985 

Perini, S., Butlin, R., Westram, A. M., &; Johannesson, K. (2022). Very short mountings are enough for sperm transfer in Littorina saxatilis. Journal of Molluscan Studies. Oxford Academic.https://doi.org/10.1093/mollus/eyab049 

Freitas, S., Westram, A. M., Schwander, T., Arakelyan, M., Ilgaz, Ç., Kumlutas, Y.,https://doi.org/10.1111/evo.14462__Butlin, R. K. (2022). Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization. Evolution. Wiley.https://doi.org/10.1111/evo.14462 

Westram, A. M., Faria, R., Johannesson, K., Butlin, R., &; Barton, N. H. (2022). Inversions and parallel evolution. Philosophical Transactions of the Royal Society B: Biological Sciences. Royal Society of London.https://doi.org/10.1098/rstb.2021.0203 

Toups, M. A., Vicoso, B., &; Pannell, J. R. (2022). Dioecy and chromosomal sex determination are maintained through allopolyploid speciation in the plant genus Mercurialis. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1010226 

Elkrewi, M. N., Khauratovich, U., Toups, M. A., Bett, V. K., Mrnjavac, A., Macon, A.,https://doi.org/10.1093/genetics/iyac123__Vicoso, B. (2022). ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp. Genetics. Oxford University Press.https://doi.org/10.1093/genetics/iyac123 

Elkrewi, M. N. (2022). Data from Elkrewi, Khauratovich, Toups et al. 2022, “ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp.”https://doi.org/10.15479/AT:ISTA:11653__Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:11653 

Simon, A., Fraisse, C., El Ayari, T., LiautardHaag, C., Strelkov, P., Welch, J. J., &; Bierne, N. (2021). How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels. Journal of Evolutionary Biology. Wiley.https://doi.org/10.1111/jeb.13709 

Picard, M. A. L., Vicoso, B., Bertrand, S., &; Escriva, H. (2021). Diversity of modes of reproduction and sex determination systems in invertebrates, and the putative contribution of genetic conflict. Genes. MDPI.https://doi.org/10.3390/genes12081136 

Elkrewi, M. N., Moldovan, M. A., Picard, M. A. L., &; Vicoso, B. (2021). Schistosome W-Linked genes inform temporal dynamics of sex chromosome evolution and suggest candidate for sex determination. Molecular Biology and Evolution. Oxford University Press .https://doi.org/10.1093/molbev/msab178 

Westram, A. M., Faria, R., Johannesson, K., &; Butlin, R. (2021). Using replicate hybrid zones to understand the genomic basis of adaptive divergence. Molecular Ecology. Wiley.https://doi.org/10.1111/mec.15861 

Huylmans, A. K., Macon, A., Hontoria, F., &; Vicoso, B. (2021). Transitions to asexuality and evolution of gene expression in Artemia brine shrimp. Proceedings of the Royal Society B: Biological Sciences. The Royal Society.https://doi.org/10.1098/rspb.2021.1720 

Vicoso, B. (2021). Data from Hyulmans et al 2021, “Transitions to asexuality and evolution of gene expression in Artemia brine shrimp.”https://doi.org/10.15479/AT:ISTA:9949__Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:9949 

Fraisse, C., &; Welch, J. J. (2020). Simulation code for Fighttps://doi.org/10.6084/m9.figshare.7957469.v1__from the distribution of epistasis on simple fitness landscapes. Royal Society of London.https://doi.org/10.6084/m9.figshare.7957469.v1 

Fraisse, C., &; Welch, J. J. (2020). Simulation code for Fighttps://doi.org/10.6084/m9.figshare.7957472.v1__from the distribution of epistasis on simple fitness landscapes. Royal Society of London.https://doi.org/10.6084/m9.figshare.7957472.v1 

Gammerdinger, W. J., Toups, M. A., &; Vicoso, B. (2020). Disagreement in FST estimators: A case study from  sex chromosomes. Molecular Ecology Resources. Wiley.https://doi.org/10.1111/1755-0998.13210 

Fraisse, C., &; Welch, J. J. (2019). The distribution of epistasis on simple fitness landscapes. Biology Letters. Royal Society of London.https://doi.org/10.1098/rsbl.2018.0881 

Raices, J., Otto, P., &; Vibranovski, M. (2019). Haploid selection drives new gene male germline expression. Genome Research. CSH Press.https://doi.org/10.1101/gr.238824.118 

Cossard, G., Toups, M. A., &; Pannell, J. (2019). Sexual dimorphism and rapid turnover in gene expression in pre-reproductive seedlings of a dioecious herb. Annals of Botany. Oxford University Press.https://doi.org/10.1093/aob/mcy183 

Picard, M. A. L., Vicoso, B., Roquis, D., Bulla, I., Augusto, R. C., Arancibia, N.,https://doi.org/10.1093/gbe/evz133__Cosseau, C. (2019). Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome. Genome Biology and Evolution. Oxford Academic Press.https://doi.org/10.1093/gbe/evz133 

Yourick, M. R., Sandkam, B. A., Gammerdinger, W. J., Escobar-Camacho, D., Nandamuri, S. P., Clark, F. E.,https://doi.org/10.1111/1755-0998.13062__Carleton, K. L. (2019). Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses. Molecular Ecology Resources. Wiley.https://doi.org/10.1111/1755-0998.13062 

Puixeu Sala, G., Pickup, M., Field, D., &; Barrett, S. C. H. (2019). Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics. New Phytologist. Wiley.https://doi.org/10.1111/nph.16050 

Puixeu Sala, G., Pickup, M., Field, D., &; Barrett, S. C. H. (2019). Data from: Variation in sexual dimorphism in a wind-pollinated plant: the influence of geographical context and life-cycle dynamics. Dryad.https://doi.org/10.5061/dryad.n1701c9 

Kelemen, R. K., Rajakaruna, H., Cockburn, I., &; Ganusov, V. (2019). Clustering of activated C T cells around Malaria-infected hepatocytes is rapid and is driven by antigen-specific cells. Frontiers in Immunology. Frontiers.https://doi.org/10.3389/fimmu.2019.02153 

Vicoso, B. (2019). Molecular and evolutionary dynamics of animal sex-chromosome turnover. Nature Ecology &; Evolution. Springer Nature.https://doi.org/10.1038/s41559-019-1050-8 

Toups, M. A., Rodrigues, N., Perrin, N., &; Kirkpatrick, M. (2019). A reciprocal translocation radically reshapes sexlinked inheritance in the common frog. Molecular Ecology. Wiley.https://doi.org/10.1111/mec.14990 

Veltsos, P., Ridout, K. E., Toups, M. A., González-Martínez, S. C., Muyle, A., Emery, O.,https://doi.org/10.1534/genetics.119.302045__Pannell, J. R. (2019). Early sex-chromosome evolution in the diploid dioecious plant Mercurialis annua. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.119.302045 

Wright, A. E., Darolti, I., Bloch, N. I., Oostra, V., Sandkam, B. A., Buechel, S. D.,https://doi.org/10.1073/pnas.1905555116__Mank, J. E. (2019). On the power to detect rare recombination events. Proceedings of the National Academy of Sciences of the United States of America. Proceedings of the National Academy of Sciences.https://doi.org/10.1073/pnas.1905555116 

Huylmans, A. K., Toups, M. A., Macon, A., Gammerdinger, W. J., &; Vicoso, B. (2019). Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome. Genome Biology and Evolution. Oxford University Press.https://doi.org/10.1093/gbe/evz053 

Vicoso, B. (2019). Supplementary data for “Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome”https://doi.org/10.15479/AT:ISTA:6060__(Huylman, Toups et al., 2019). . Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:6060 

Fraisse, C., Puixeu Sala, G., &; Vicoso, B. (2019). Pleiotropy modulates the efficacy of selection in drosophila melanogaster. Molecular Biology and Evolution. Oxford University Press.https://doi.org/10.1093/molbev/msy246 

Harrison, M., Arning, N., Kremer, L., Ylla, G., Belles, X., Bornberg Bauer, E.,https://doi.org/10.1002/jez.b.22824__Schal, C. (2018). Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. Wiley.https://doi.org/10.1002/jez.b.22824 

Harrison, M., Jongepier, E., Robertson, H., Arning, N., Bitard Feildel, T., Chao, H.,https://doi.org/10.1038/s41559-017-0459-1__Bornberg Bauer, E. (2018). Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology and Evolution. Springer Nature.https://doi.org/10.1038/s41559-017-0459-1 

Harrison, M. C., Jongepier, E., Robertson, H. M., Arning, N., Bitard-Feildel, T., Chao, H.,https://doi.org/10.5061/dryad.51d4r__Bornberg-Bauer, E. (2018). Data from: Hemimetabolous genomes reveal molecular basis of termite eusociality. Dryad.https://doi.org/10.5061/dryad.51d4r 

Ma, W., Veltsos, P., Toups, M. A., Rodrigues, N., Sermier, R., Jeffries, D., &; Perrin, N. (2018). Tissue specificity and dynamics of sex biased gene expression in a common frog population with differentiated, yet homomorphic, sex chromosomes. Genes. MDPI AG.https://doi.org/10.3390/genes9060294 

Gammerdinger, W. J., &; Kocher, T. (2018). Unusual diversity of sex chromosomes in African cichlid fishes. Genes. MDPI AG.https://doi.org/10.3390/genes9100480 

Kincaid-Smith, J., Picard, M. A. L., Cosseau, C., Boissier, J., Severac, D., Grunau, C., &; Toulza, E. (2018). Parent-of-Origin-Dependent Gene Expression in Male and Female Schistosome Parasites. Genome Biology and Evolution. Oxford University Press.https://doi.org/10.1093/gbe/evy037 

Westram, A. M., Rafajlovi, M., Chaube, P., Faria, R., Larsson, T., Panova, M.,https://doi.org/10.1002/evl3.74__Butlin, R. (2018). Clines on the seashore: The genomic architecture underlying rapid divergence in the face of gene flow. Evolution Letters. Wiley.https://doi.org/10.1002/evl3.74 

Hollander, J., Montaño-Rendón, M., Bianco, G., Yang, X., Westram, A. M., Duvaux, L.,https://doi.org/10.1002/evl3.85__Butlin, R. K. (2018). Are assortative mating and genital divergence driven by reinforcement? Evolution Letters. Wiley.https://doi.org/10.1002/evl3.85 

Westram, A. M., Rafajlovi, M., Chaube, P., Faria, R., Larsson, T., Panova, M.,https://doi.org/10.5061/dryad.bp25b65__Butlin, R. (2018). Data from: Clines on the seashore: the genomic architecture underlying rapid divergence in the face of gene flow. Dryad.https://doi.org/10.5061/dryad.bp25b65 

Hollander, J., Montaño-Rendón, M., Bianco, G., Yang, X., Westram, A. M., Duvaux, L.,https://doi.org/10.5061/dryad.51sd2p5__Butlin, R. K. (2018). Data from: Are assortative mating and genital divergence driven by reinforcement? Dryad.https://doi.org/10.5061/dryad.51sd2p5 

Fraisse, C., Roux, C., Gagnaire, P., Romiguier, J., Faivre, N., Welch, J., &; Bierne, N. (2018). The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies. PeerJ. PeerJ.https://doi.org/10.7717/peerj.5198 

Picard, M. A. L., Cosseau, C., Ferré, S., Quack, T., Grevelding, C., Couté, Y., &; Vicoso, B. (2018). Evolution of gene dosage on the Z-chromosome of schistosome parasites. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.35684 

Vicoso, B. (2018). Input files and scripts from “Evolution of gene dosage on the Z-chromosome of schistosome parasites”https://doi.org/10.15479/AT:ISTA:109__by Picard M.A.L., et al (2018). Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:109 

Kelemen, R. K., &; Vicoso, B. (2018). Complex history and differentiation patterns of the t-haplotype, a mouse meiotic driver. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.117.300513 

Fraisse, C. (2018). Supplementary Files for “Pleiotropy modulates the efficacy of selection in Drosophila melanogaster.”https://doi.org/10.15479/at:ista:/5757__Institute of Science and Technology Austria.https://doi.org/10.15479/at:ista:/5757 

Wright, A., Darolti, I., Bloch, N., Oostra, V., Sandkam, B., Buechel, S.,https://doi.org/10.1038/ncomms14251__Mank, J. (2017). Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation. Nature Communications. Nature Publishing Group.https://doi.org/10.1038/ncomms14251 

Argyridou, E., Huylmans, A. K., Königer, A., &; Parsch, J. (2017). X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster. Heredity. Nature Publishing Group.https://doi.org/10.1038/hdy.2017.12 

Argyridou, E., Huylmans, A. K., Königer, A., &; Parsch, J. (2017). Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster. Dryad.https://doi.org/10.5061/dryad.02f6r 

Huylmans, A. K., Macon, A., &; Vicoso, B. (2017). Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome. Molecular Biology and Evolution. Oxford University Press.https://doi.org/10.1093/molbev/msx190 

Fraisse, C., Picard, M. A. L., &; Vicoso, B. (2017). The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W. Nature Communications. Nature Publishing Group.https://doi.org/10.1038/s41467-017-01663-5 

Fraisse, C. (2017). Supplementary Files for “The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W.”https://doi.org/10.15479/AT:ISTA:7163__Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:7163 

Vicoso, B. (2017). Data for “The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology.”https://doi.org/10.15479/AT:ISTA:78__Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:78 

Vicoso, B. (2017). Code for “The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology.”https://doi.org/10.15479/AT:ISTA:79 __Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:79  

Huylmans, A. K., López Ezquerra, A., Parsch, J., &; Cordellier, M. (2016). De novo transcriptome assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia galeata. Genome Biology and Evolution. Oxford University Press.https://doi.org/10.1093/gbe/evw221 

Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., &; Bierne, N. (2016). Shedding light on the grey zone of speciation along a continuum of genomic divergence. PLoS Biology. Public Library of Science.https://doi.org/10.1371/journal.pbio.2000234 

Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., &; Bierne, N. (2016). Simulation study to test the robustness of ABC in face of recent times of divergence. Public Library of Science.https://doi.org/10.1371/journal.pbio.2000234.s016 

Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., &; Bierne, N. (2016). Accessions of surveyed individuals, geographic locations and summary statistics. Public Library of Science.https://doi.org/10.1371/journal.pbio.2000234.s017 

Pal, A., &; Vicoso, B. (2015). The X chromosome of hemipteran insects: Conservation, dosage compensation and sex-biased expression. Genome Biology and Evolution. Oxford University Press.https://doi.org/10.1093/gbe/evv215 

Carvalho, A., Vicoso, B., Russo, C., Swenor, B., &; Clark, A. (2015). Birth of a new gene on the Y chromosome of Drosophila melanogaster. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1516543112