A. Schauer, K. Pranjic-Ferscha, R. Hauschild, and C.-P. J. Heisenberg, “Robust axis elongation by Nodal-dependent restriction of BMP signaling,” Development, vol. 151, no. 4. The Company of Biologists, pp. 1–18, 2024.
LibreCat: https://research-explorer.ista.ac.at/record/15048
DOI: 10.1242/dev.202316

R. Hauschild, “Matlab script for analysis of clone dispersal.” ISTA, 2024.
LibreCat: https://research-explorer.ista.ac.at/record/14926
DOI: 10.15479/AT:ISTA:14926

B. Zens et al., “Lift-out cryo-FIBSEM and cryo-ET reveal the ultrastructural landscape of extracellular matrix,” Journal of Cell Biology, vol. 223, no. 6. Rockefeller University Press, 2024.
LibreCat: https://research-explorer.ista.ac.at/record/15146
DOI: 10.1083/jcb.202309125
PMID: 38506714

S. Mondal, R. B. Jethwa, B. Pant, R. Hauschild, and S. A. Freunberger, “Singlet oxygen in non-aqueous oxygen redox: Direct spectroscopic evidence for formation pathways and reliability of chemical probes,” Faraday Discussions, vol. 248. Royal Society of Chemistry, pp. 175–189, 2024.
LibreCat: https://research-explorer.ista.ac.at/record/13044
DOI: 10.1039/d3fd00088e
WoS: 001070423500001
PMID: 37750344

F. R. Gärtner et al., “Plasmacytoid dendritic cells control homeostasis of megakaryopoiesis,” Nature, vol. 631. Springer Nature, pp. 645–653, 2024.
LibreCat: https://research-explorer.ista.ac.at/record/17284
DOI: 10.1038/s41586-024-07671-y
PMID: 38987596

S. Mondal, H. T. K. Nguyen, R. Hauschild, and S. A. Freunberger, “Individual Marcus-type kinetics controls singlet and triplet oxygen evolution from superoxide,” ChemRxiv. .
LibreCat: https://research-explorer.ista.ac.at/record/17468
DOI: 10.26434/chemrxiv-2024-3vrzz

K. Huljev et al., “A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish,” Developmental Cell, vol. 58, no. 7. Elsevier, p. 582–596.e7, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/12830
DOI: 10.1016/j.devcel.2023.02.016
WoS: 000982111800001

A. Zavadakova, L. Vistejnova, T. Belinova, F. Tichanek, D. Bilikova, and P. R. Mouton, “Novel stereological method for estimation of cell counts in 3D collagen scaffolds,” Scientific Reports, vol. 13, no. 1. Springer Nature, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/13033
DOI: 10.1038/s41598-023-35162-z
WoS: 000995271600104

J. Kroll et al., “Adaptive pathfinding by nucleokinesis during amoeboid migration,” EMBO Journal. Embo Press, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/13342
DOI: 10.15252/embj.2023114557
PMID: 37987147

D. Cikes et al., “PCY-regulated lipid biosynthesis is critical to muscle health and ageing,” Nature Metabolism, vol. 5. Springer Nature, pp. 495–515, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/12747
DOI: 10.1038/s42255-023-00766-2
WoS: 000992064000002
PMID: 36941451

E. Méhes et al., “D cell segregation geometry and dynamics are governed by tissue surface tension regulation,” Communications Biology, vol. 6. Springer Nature, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/14041
DOI: 10.1038/s42003-023-05181-7
WoS: 001042544100001
PMID: 37542157

P. Velicky et al., “Dense 4D nanoscale reconstruction of living brain tissue,” Nature Methods, vol. 20. Springer Nature, pp. 1256–1265, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/13267
DOI: 10.1038/s41592-023-01936-6
WoS: 001025621500001
PMID: 37429995

K. J. Westerich et al., “Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1,” Developmental Cell, vol. 58, no. 17. Elsevier, p. 1578–1592.e5, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/14781
DOI: 10.1016/j.devcel.2023.06.009
PMID: 37463577

J. G. Danzl, “Research data for the publication ‘Imaging brain tissue architecture across millimeter to nanometer scales.’” Institute of Science and Technology Austria, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/13126
DOI: 10.15479/AT:ISTA:13126

J. M. Michalska et al., “Imaging brain tissue architecture across millimeter to nanometer scales,” Nature Biotechnology. Springer Nature, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/14257
DOI: 10.1038/s41587-023-01911-8
WoS: 001065254200001

F. P. Assen et al., “Multitier mechanics control stromal adaptations in swelling lymph nodes,” Nature Immunology, vol. 23. Springer Nature, pp. 1246–1255, 2022.
LibreCat: https://research-explorer.ista.ac.at/record/9794
DOI: 10.1038/s41590-022-01257-4
WoS: 000822975900002

J. Slovakova et al., “Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells,” Proceedings of the National Academy of Sciences of the United States of America, vol. 119, no. 8. Proceedings of the National Academy of Sciences, 2022.
LibreCat: https://research-explorer.ista.ac.at/record/10766
DOI: 10.1073/pnas.2122030119
WoS: 000766926900009

A. J. Johnson et al., “Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution,” Molecular Plant, vol. 15, no. 10. Elsevier, pp. 1533–1542, 2022.
LibreCat: https://research-explorer.ista.ac.at/record/12239
DOI: 10.1016/j.molp.2022.09.003
WoS: 000882769800009
PMID: 36081349

A.-K. Weier et al., “Multiple centrosomes enhance migration and immune cell effector functions of mature dendritic cells,” Journal of Cell Biology, vol. 221, no. 12. Rockefeller University Press, 2022.
LibreCat: https://research-explorer.ista.ac.at/record/12122
DOI: 10.1083/jcb.202107134
WoS: 000932941400001
PMID: 36214847 

H. Li et al., “Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana,” New Phytologist, vol. 229, no. 1. Wiley, pp. 351–369, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/8582
DOI: 10.1111/nph.16887
WoS: 000570187900001

K. Vaahtomeri, C. Moussion, R. Hauschild, and M. K. Sixt, “Shape and function of interstitial chemokine CCL21 gradients are independent of heparan sulfates produced by lymphatic endothelium,” Frontiers in Immunology, vol. 12. Frontiers, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/9259
DOI: 10.3389/fimmu.2021.630002
WoS: 000627134400001
PMID: 33717158

M. Gast, N. P. Kadzioch, D. Milius, F. Origgi, and P. Plattet, “Oligomerization and cell egress controlled by two microdomains of canine distemper virus matrix protein,” mSphere, vol. 6, no. 2. American Society for Microbiology, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/9361
DOI: 10.1128/mSphere.01024-20
WoS: 000663823400025
PMID: 33853875

T. Zisis et al., “Sequential and switchable patterning for studying cellular processes under spatiotemporal control,” ACS Applied Materials and Interfaces, vol. 13, no. 30. American Chemical Society, pp. 35545–35560, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/9822
DOI: 10.1021/acsami.1c09850
WoS: 000683741400026
PMID: 34283577

G. Nelson et al., “QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy,” Journal of Microscopy, vol. 284, no. 1. Wiley, pp. 56–73, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/9911
DOI: 10.1111/jmi.13041
WoS: 000683702700001

S. Bajaj et al., “Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration,” EMBO Journal, vol. 40, no. 23. Embo Press, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/10179
DOI: 10.15252/embj.2021108714
WoS: 000708012800001
PMID: 34661293

C. L. Pranger et al., “PIPEcloned human IgE and Ig antibodies: New tools for investigating cow’s milk allergy and tolerance,” Allergy, vol. 76, no. 5. Wiley, pp. 1553–1556, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/10836
DOI: 10.1111/all.14604
WoS: 000577708800001
PMID: 32990982

M. Valentini et al., “Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states,” Science, vol. 373, no. 6550. American Association for the Advancement of Science, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/8910
DOI: 10.1126/science.abf1513
WoS: 000677843100034
arXiv: 2008.02348

J. Morandell et al., “Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development,” Nature Communications, vol. 12, no. 1. Springer Nature, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/9429
DOI: 10.1038/s41467-021-23123-x
WoS: 000658769900010

Z. Gelová et al., “Developmental roles of auxin binding protein 1 in Arabidopsis thaliana,” Plant Science, vol. 303. Elsevier, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/8931
DOI: 10.1016/j.plantsci.2020.110750
WoS: 000614154500001
PMID: 33487339

R. Hauschild, “Amplified centrosomes in dendritic cells promote immune cell effector functions.” IST Austria, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/8181
DOI: 10.15479/AT:ISTA:8181

R. Hauschild, “RGtracker.” IST Austria, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/8294
DOI: 10.15479/AT:ISTA:8294

A. Kopf et al., “Microtubules control cellular shape and coherence in amoeboid migrating cells,” The Journal of Cell Biology, vol. 219, no. 6. Rockefeller University Press, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/7875
DOI: 10.1083/jcb.201907154
WoS: 000538141100020
PMID: 32379884

J. Singer, J. Singer, and E. Jensen-Jarolim, “Precision medicine in clinical oncology: the journey from IgG antibody to IgE,” Current opinion in allergy and clinical immunology, vol. 20, no. 3. Wolters Kluwer, pp. 282–289, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/7864
DOI: 10.1097/ACI.0000000000000637
WoS: 000561358300010

A. Schauer, D. C. Nunes Pinheiro, R. Hauschild, and C.-P. J. Heisenberg, “Zebrafish embryonic explants undergo genetically encoded self-assembly,” eLife, vol. 9. eLife Sciences Publications, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/7888
DOI: 10.7554/elife.55190
WoS: 000531544400001
PMID: 32250246

J. Slovakova et al., “Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion,” bioRxiv. Cold Spring Harbor Laboratory, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/9750
DOI: 10.1101/2020.11.20.391284

A. Reversat et al., “Cellular locomotion using environmental topography,” Nature, vol. 582. Springer Nature, pp. 582–585, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/7885
DOI: 10.1038/s41586-020-2283-z
WoS: 000532688300008

S. M. Truckenbrodt, C. M. Sommer, S. O. Rizzoli, and J. G. Danzl, “A practical guide to optimization in  expansion microscopy,” Nature Protocols, vol. 14, no. 3. Nature Publishing Group, pp. 832–863, 2019.
LibreCat: https://research-explorer.ista.ac.at/record/6052
DOI: 10.1038/s41596-018-0117-3
WoS: 000459890700008
PMID: 30778205

M. Fenu et al., “A novel magnet-based scratch method for standardisation of wound-healing assays,” Scientific Reports, vol. 9, no. 1. Springer Nature, 2019.
LibreCat: https://research-explorer.ista.ac.at/record/6867
DOI: 10.1038/s41598-019-48930-7
WoS: 000483697800007
PMID: 31477739

C. Mckenzie et al., “Isolation of synaptic vesicles from genetically engineered cultured neurons,” Journal of Neuroscience Methods, vol. 312. Elsevier, pp. 114–121, 2019.
LibreCat: https://research-explorer.ista.ac.at/record/7406
DOI: 10.1016/j.jneumeth.2018.11.018
WoS: 000456220900013
PMID: 30496761

M. Goudarzi, A. Boquet-Pujadas, J. C. Olivo-Marin, and E. Raz, “Fluid dynamics during bleb formation in migrating cells in vivo,” PLOS ONE, vol. 14, no. 2. Public Library of Science, 2019.
LibreCat: https://research-explorer.ista.ac.at/record/6093
DOI: 10.1371/journal.pone.0212699
WoS: 000459712100022

J. Renkawitz et al., “Nuclear positioning facilitates amoeboid migration along the path of least resistance,” Nature, vol. 568. Springer Nature, pp. 546–550, 2019.
LibreCat: https://research-explorer.ista.ac.at/record/6328
DOI: 10.1038/s41586-019-1087-5
WoS: 000465594200050
PMID: 30944468

A. Ratheesh et al., “Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration,” Developmental Cell, vol. 45, no. 3. Elsevier, pp. 331–346, 2018.
LibreCat: https://research-explorer.ista.ac.at/record/308
DOI: 10.1016/j.devcel.2018.04.002
WoS: 000432461400009
PMID: 29738712

A. F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, and M. K. Sixt, “Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration,” European Journal of Immunology, vol. 48, no. 6. Wiley-Blackwell, pp. 1074–1077, 2018.
LibreCat: https://research-explorer.ista.ac.at/record/437
DOI: 10.1002/eji.201747358
WoS: 000434963700016

M. Brown et al., “Lymphatic exosomes promote dendritic cell migration along guidance cues,” Journal of Cell Biology, vol. 217, no. 6. Rockefeller University Press, pp. 2205–2221, 2018.
LibreCat: https://research-explorer.ista.ac.at/record/275
DOI: 10.1083/jcb.201612051
WoS: 000438077800026
PMID: 29650776

R. Hauschild, “Fluorescence lifetime analysis of FLIM  TCSPC data.” Institute of Science and Technology Austria, 2018.
LibreCat: https://research-explorer.ista.ac.at/record/5588
DOI: 10.15479/AT:ISTA:0113

M. Hons et al., “Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells,” Nature Immunology, vol. 19, no. 6. Nature Publishing Group, pp. 606–616, 2018.
LibreCat: https://research-explorer.ista.ac.at/record/15
DOI: 10.1038/s41590-018-0109-z
WoS: 000433041500026
PMID: 29777221

L. Li, G. Krens, M. Fendrych, and J. Friml, “Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls,” Bio-protocol, vol. 8, no. 1. Bio-protocol, 2018.
LibreCat: https://research-explorer.ista.ac.at/record/442
DOI: 10.21769/BioProtoc.2685

K. Vaahtomeri et al., “Locally triggered release of the chemokine CCL21 promotes dendritic cell transmigration across lymphatic endothelia,” Cell Reports, vol. 19, no. 5. Cell Press, pp. 902–909, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/672
DOI: 10.1016/j.celrep.2017.04.027

J. Schwarz et al., “Dendritic cells interpret haptotactic chemokine gradients in a manner governed by signal to noise ratio and dependent on GRK6,” Current Biology, vol. 27, no. 9. Cell Press, pp. 1314–1325, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/674
DOI: 10.1016/j.cub.2017.04.004

J. Mueller et al., “Load adaptation of lamellipodial actin networks,” Cell, vol. 171, no. 1. Cell Press, pp. 188–200, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/727
DOI: 10.1016/j.cell.2017.07.051
WoS: 000411331800020

R. Hauschild, “Forward migration indexes.” Institute of Science and Technology Austria, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/5570
DOI: 10.15479/AT:ISTA:75

T. Bergmiller et al., “Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity.” Institute of Science and Technology Austria, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/5560
DOI: 10.15479/AT:ISTA:53

T. Bergmiller et al., “Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity,” Science, vol. 356, no. 6335. American Association for the Advancement of Science, pp. 311–315, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/665
DOI: 10.1126/science.aaf4762

D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, and J. Friml, “Live tracking of moving samples in confocal microscopy for vertically grown roots,” eLife, vol. 6. eLife Sciences Publications, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/946
DOI: 10.7554/eLife.26792
WoS: 000404728300001

D. von Wangenheim, R. Hauschild, and J. Friml, “Light sheet fluorescence microscopy of plant roots growing on the surface of a gel,” Journal of visualized experiments JoVE, vol. 2017, no. 119. Journal of Visualized Experiments, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/1078
DOI: 10.3791/55044
WoS: 000397847200041

D. von Wangenheim, R. Hauschild, and J. Friml, “Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel.” Institute of Science and Technology Austria, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/5565
DOI: 10.15479/AT:ISTA:66

R. Hauschild, “Live tracking of moving samples in confocal microscopy for vertically grown roots.” Institute of Science and Technology Austria, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/5566
DOI: 10.15479/AT:ISTA:69

G. Krens et al., “Interstitial fluid osmolarity modulates the action of differential tissue surface tension in progenitor cell segregation during gastrulation,” Development, vol. 144, no. 10. Company of Biologists, pp. 1798–1806, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/676
DOI: 10.1242/dev.144964
PMID: 28512197

M. Smutny et al., “Friction forces position the neural anlage,” Nature Cell Biology, vol. 19. Nature Publishing Group, pp. 306–317, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/661
DOI: 10.1038/ncb3492
PMID: 28346437

J. Schwarz et al., “A microfluidic device for measuring cell migration towards substrate bound and soluble chemokine gradients,” Scientific Reports, vol. 6. Nature Publishing Group, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/1154
DOI: 10.1038/srep36440

R. Hauschild, “Fiji script to determine average speed and direction of migration of cells.” Institute of Science and Technology Austria, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/5555
DOI: 10.15479/AT:ISTA:44

A. F. Leithner et al., “Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes,” Nature Cell Biology, vol. 18. Nature Publishing Group, pp. 1253–1259, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/1321
DOI: 10.1038/ncb3426

X. Chen et al., “Inhibition of cell expansion by rapid AB-mediated auxin effect on microtubules,” Nature, vol. 516, no. 729. Nature Publishing Group, pp. 90–93, 2014.
LibreCat: https://research-explorer.ista.ac.at/record/1862
DOI: 10.1038/nature13889
PMID: 25409144

P. Gao et al., “Deterministic progenitor behavior and unitary production of neurons in the neocortex,” Cell, vol. 159, no. 4. Cell Press, pp. 775–788, 2014.
LibreCat: https://research-explorer.ista.ac.at/record/2022
DOI: 10.1016/j.cell.2014.10.027

M. Weber et al., “Interstitial dendritic cell guidance by haptotactic chemokine gradients,” Science, vol. 339, no. 6117. American Association for the Advancement of Science, pp. 328–332, 2013.
LibreCat: https://research-explorer.ista.ac.at/record/2839
DOI: 10.1126/science.1228456

M. Behrndt et al., “Forces driving epithelial spreading in zebrafish gastrulation,” Science, vol. 338, no. 6104. American Association for the Advancement of Science, pp. 257–260, 2012.
LibreCat: https://research-explorer.ista.ac.at/record/2950
DOI: 10.1126/science.1224143

C. M. Sommer, C. Straehle, U. Köthe, and F. A. Hamprecht, “Ilastik: Interactive learning and segmentation toolkit,” in 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro, Chicago, Illinois, USA, 2011.
LibreCat: https://research-explorer.ista.ac.at/record/9943
DOI: 10.1109/isbi.2011.5872394

E. Papusheva and C.-P. J. Heisenberg, “Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis,” EMBO Journal, vol. 29, no. 16. Wiley-Blackwell, pp. 2753–2768, 2010.
LibreCat: https://research-explorer.ista.ac.at/record/4157
DOI: 10.1038/emboj.2010.182
PMID: 20717145