Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps
E. Mascolo, R.E. Körei, S. Herrera-Álvarez, C.C. Guet, J. Crocker, G. Tkadik, Current Opinion in Genetics &; Development 99 (2026).

Responsive lysogeny under nonproductive phage binding
B. Wu, C.C. Guet, Evolution 80 (2026) 1365–1373.

Robust antibiotic sensitization of pathogenic Pseudomonas aeruginosa via negative hysteresis in the cell envelope
F. Buchholz, L.M. Upterworth, L. Tueffers, E.E. Groth, K. Haas, D. Schütz, A. Savietto Scholz, A. Batra, S. Pal, S. Banerjee, B.N. Dubey, S. Franzenburg, B. Kalsdorf, K.F. Rabe, D. Nurjadi, J. Rupp, D.I. Andersson, H. Sondermann, M. Bramkamp, R. Römhild, H. Schulenburg, Nature Communications 17 (2026).

Studying the evolutionary systems biology of the lac operon
A. Spasi, Studying the Evolutionary Systems Biology of the Lac Operon, Institute of Science and Technology Austria, 2026.

Linking molecular mechanisms to their evolutionary consequences: a primer
R. Grah, C.C. Guet, G. Tkadik, M. Lagator, Genetics 229 (2025).

Data for "Pulsatile basal gene expression as a fitness determinant in bacteria"
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkadik, C.C. Guet, (2025).

Pulsatile basal gene expression as a fitness determinant in bacteria
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkadik, C.C. Guet, Proceedings of the National Academy of Sciences 122 (2025).

A 0-dependent single domain chemogenetic tool for protein de-dimerization
J. Antoney, S. Kainrath, J.G. Dubowsky, F.H. Ahmed, S.W. Kang, E.R.R. Mackie, G. Bracho Granado, T.P. Soares Da Costa, C.J. Jackson, H.L. Janovjak, Journal of Molecular Biology 437 (2025).

A bacterial toxin-antitoxin system as a native defence element against RNA phages
N. Nikolic, M. Pleska, T. Bergmiller, C.C. Guet, Biology Letters 21 (2025).

Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties
M. Gallemi, J.C. Montesinos López, N. Zarevski, J. Pribyl, P. Skládal, E.B. Hannezo, E. Benková, Frontiers in Plant Science 16 (2025).

An examination on phages as a naturally composable system
B. Wu, An Examination on Phages as a Naturally Composable System, Institute of Science and Technology Austria, 2025.

Bacterial Electrophysiology
W.C. Lo, E. Krasnopeeva, T. Pilizota, Annual Review of Biophysics 53 (2024) 487–510.

Monitoring lineages of growing and dividing bacteria reveals an inducible memory of <i>mar</i> operon expression
C.C. Guet, L. Bruneaux, P. Oikonomou, M. Aldana, P. Cluzel, Frontiers in Microbiology 14 (2023).

Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level
A. Davidovi, R.P. Chait, G. Batt, J. Ruess, PLoS Computational Biology 18 (2022).

Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells
G. Glover, M. Voliotis, U. apiska, B.M. Invergo, D. Soanes, P. O’Neill, K. Moore, N. Nikolic, P. Petrov, D.S. Milner, S. Roy, K. Heesom, T.A. Richards, K. Tsaneva-Atanasova, S. Pagliara, Communications Biology 5 (2022).

Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli
N. Nikolic, M. Sauert, T.G. Albanese, I. Moll, BMC Research Notes 15 (2022).

Adaptation dynamics between copynumber and point mutations
I. Tomanek, C.C. Guet, ELife 11 (2022).

Flow cytometry YFP and CFP data and deep sequencing data of populations evolving in galactose
I. Tomanek, C.C. Guet, (2022).

Predicting bacterial promoter function and evolution from random sequences
M. Lagator, S. Sarikas, M. Steinrück, D. Toledo-Aparicio, J.P. Bollback, C.C. Guet, G. Tkadik, ELife 11 (2022).

The physiology and genetics of bacterial responses to antibiotic combinations
R. Römhild, M.T. Bollenbach, D.I. Andersson, Nature Reviews Microbiology 20 (2022) 478–490.