Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria
D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, M. Kim, MBio 12 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/15270
DOI: 10.1128/mbio.00676-21
PMID: 34253054

Pathogenic Escherichia coli hijack the host immune response
K. Tomasek, Pathogenic Escherichia Coli Hijack the Host Immune Response, Institute of Science and Technology Austria, 2021.
LibreCat: https://research-explorer.ista.ac.at/record/10307
DOI: 10.15479/at:ista:10307

Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to C
K. Tomasek, A.F. Leithner, I. Glatzová, M.S. Lukesch, C.C. Guet, M.K. Sixt, BioRxiv (n.d.).
LibreCat: https://research-explorer.ista.ac.at/record/10316
DOI: 10.1101/2021.10.18.464770

Design and application of light-regulated receptor tyrosine kinases
S. Kainrath, H.L. Janovjak, in:, D. Niopek (Ed.), Photoswitching Proteins, Springer Nature, 2020, pp. 233–246.
LibreCat: https://research-explorer.ista.ac.at/record/8173
DOI: 10.1007/978-1-0716-0755-8_16

Gene regulation across scales – how biophysical constraints shape evolution
R. Grah, Gene Regulation across Scales – How Biophysical Constraints Shape Evolution, Institute of Science and Technology Austria, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/8155
DOI: 10.15479/AT:ISTA:8155

Normative models of enhancer function
R. Grah, B. Zoller, G. Tkadik, BioRxiv (2020).
LibreCat: https://research-explorer.ista.ac.at/record/7675
DOI: 10.1101/2020.04.08.029405

The relation between crosstalk and gene regulation form revisited
R. Grah, T. Friedlander, PLOS Computational Biology 16 (2020).
LibreCat: https://research-explorer.ista.ac.at/record/7569
DOI: 10.1371/journal.pcbi.1007642
WoS: 000526725200019

Sequences of gene regulatory network permutations for the article "Local genetic context shapes the function of a gene regulatory network"
A.A. Nagy-Staron, (2020).
LibreCat: https://research-explorer.ista.ac.at/record/8951
DOI: 10.15479/AT:ISTA:8951

Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation
R. Grah, (2020).
LibreCat: https://research-explorer.ista.ac.at/record/7383
DOI: 10.15479/AT:ISTA:7383

Synthetic tools for optogenetic and chemogenetic inhibition of cellular signals
S. Kainrath, Synthetic Tools for Optogenetic and Chemogenetic Inhibition of Cellular Signals, Institute of Science and Technology Austria, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/7680
DOI: 10.15479/AT:ISTA:7680

Gene amplification as a form of population-level gene expression regulation
I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkadik, C.C. Guet, Nature Ecology &; Evolution 4 (2020) 612–625.
LibreCat: https://research-explorer.ista.ac.at/record/7652
DOI: 10.1038/s41559-020-1132-7
WoS: 000519008300005

The evolution of gene expression by copy number and point mutations
I. Tomanek, The Evolution of Gene Expression by Copy Number and Point Mutations, Institute of Science and Technology Austria, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/8653
DOI: 10.15479/AT:ISTA:8653

A modular degron library for synthetic circuits in mammalian cells
H. Chassin, M. Müller, M. Tigges, L. Scheller, M. Lang, M. Fussenegger, Nature Communications 10 (2019).
LibreCat: https://research-explorer.ista.ac.at/record/6465
DOI: 10.1038/s41467-019-09974-5
WoS: 000466338600006

Commentary: A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision
C. Igler, S.T. Abedon, Frontiers in Microbiology 10 (2019).
LibreCat: https://research-explorer.ista.ac.at/record/6717
DOI: 10.3389/fmicb.2019.01171
WoS: 000470131200001

Molecular noise of innate immunity shapes bacteria-phage ecologies
J. Ruess, M. Pleska, C.C. Guet, G. Tkadik, PLoS Computational Biology 15 (2019).
LibreCat: https://research-explorer.ista.ac.at/record/6784
DOI: 10.1371/journal.pcbi.1007168
WoS: 000481577700032

Supporting text and results
J. Ruess, M. Pleska, C.C. Guet, G. Tkadik, (2019).
LibreCat: https://research-explorer.ista.ac.at/record/9786
DOI: 10.1371/journal.pcbi.1007168.s001

Transient memory in gene regulation
C.C. Guet, T.A. Henzinger, C. Igler, T. Petrov, A. Sezgin, in:, 17th International Conference on Computational Methods in Systems Biology, Springer Nature, 2019, pp. 155–187.
LibreCat: https://research-explorer.ista.ac.at/record/7147
DOI: 10.1007/978-3-030-31304-3_9
WoS: 000557875100009

Autoregulation of bacterial gene expression: lessons from the MazEF toxin–antitoxin system
N. Nikolic, Current Genetics 65 (2019) 133–138.
LibreCat: https://research-explorer.ista.ac.at/record/138
DOI: 10.1007/s00294-018-0879-8
WoS: 000456958800017

Harmonic dynamics of the Abelian sandpile
M. Lang, M. Shkolnikov, Proceedings of the National Academy of Sciences 116 (2019) 2821–2830.
LibreCat: https://research-explorer.ista.ac.at/record/196
DOI: 10.1073/pnas.1812015116
WoS: 000459074400013
PMID:  30728300
arXiv: 1806.10823

Data for the paper "Gene amplification as a form of population-level gene expression regulation"
I. Tomanek, (2019).
LibreCat: https://research-explorer.ista.ac.at/record/7016
DOI: 10.15479/AT:ISTA:7016