Boehm A, Arnoldini M, Bergmiller T, Röösli T, Bigosch C, Ackermann M. 2016. Quantification of the growth rate reduction as a consequence of age-specific mortality, Public Library of Science,10.1371/journal.pgen.1005974.s015 .
LibreCat: https://research-explorer.ista.ac.at/record/9873
DOI: 10.1371/journal.pgen.1005974.s015

Wielgoss S, Bergmiller T, Bischofberger AM, Hall AR. 2016. Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria. Molecular Biology and Evolution. 33(3), 770–782.
LibreCat: https://research-explorer.ista.ac.at/record/5749
DOI: 10.1093/molbev/msv270
PMID: 26609077

Daca P, Henzinger TA, Kretinsky J, Petrov T. 2016. Linear distances between Markov chains. CONCUR: Concurrency Theory, LIPIcs, vol. 59, 20.
LibreCat: https://research-explorer.ista.ac.at/record/1093
DOI: 10.4230/LIPIcs.CONCUR.2016.20

Daca P, Henzinger TA, Kretinsky J, Petrov T. 2016. Faster statistical model checking for unbounded temporal properties. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 9636, 112–129.
LibreCat: https://research-explorer.ista.ac.at/record/1234
DOI: 10.1007/978-3-662-49674-9_7

Pleska M, Qian L, Okura R, Bergmiller T, Wakamoto Y, Kussell E, Guet CC. 2016. Bacterial autoimmunity due to a restriction-modification system. Current Biology. 26(3), 404–409.
LibreCat: https://research-explorer.ista.ac.at/record/1243
DOI: 10.1016/j.cub.2015.12.041

Friedlander T, Prizak R, Guet CC, Barton NH, Tkadik G. 2016. Intrinsic limits to gene regulation by global crosstalk. Nature Communications. 7, 12307.
LibreCat: https://research-explorer.ista.ac.at/record/1358
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Paixao T, Sudholt D, Heredia J, Trubenova B. 2015. First steps towards a runtime comparison of natural and artificial evolution. Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation. GECCO: Genetic and evolutionary computation conference, 1455–1462.
LibreCat: https://research-explorer.ista.ac.at/record/1430
DOI: 10.1145/2739480.2754758

Paixao T, Badkobeh G, Barton NH, Çörüf D, Dang D, Friedrich T, Lehre P, Sudholt D, Sutton A, Trubenova B. 2015. Toward a unifying framework for evolutionary processes.  Journal of Theoretical Biology. 383, 28–43.
LibreCat: https://research-explorer.ista.ac.at/record/1542
DOI: 10.1016/j.jtbi.2015.07.011

Geiger B, Petrov T, Kubin G, Koeppl H. 2015. Optimal Kullback-Leibler aggregation via information bottleneck. IEEE Transactions on Automatic Control. 60(4), 1010–1022.
LibreCat: https://research-explorer.ista.ac.at/record/1840
DOI: 10.1109/TAC.2014.2364971

Tugrul M, Paixao T, Barton NH, Tkadik G. 2015. Other fitness models for comparison &; for interacting TFBSs, Public Library of Science,10.1371/journal.pgen.1005639.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9712
DOI: 10.1371/journal.pgen.1005639.s001

Wielgoss S, Bergmiller T, Bischofberger AM, Hall AR. 2015. Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria, Dryad,10.5061/dryad.cj910 .
LibreCat: https://research-explorer.ista.ac.at/record/9719
DOI: 10.5061/dryad.cj910

Tugrul M, Paixao T, Barton NH, Tkadik G. 2015. Dynamics of transcription factor binding site evolution. PLoS Genetics. 11(11).
LibreCat: https://research-explorer.ista.ac.at/record/1666
DOI: 10.1371/journal.pgen.1005639

Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. 2015. Model checking gene regulatory networks. 9035, 469–483.
LibreCat: https://research-explorer.ista.ac.at/record/1835
DOI: 10.1007/978-3-662-46681-0_47

Grabowska A, Wywia E, Dunin Horkawicz S, asica A, Wösten M, Nagy-Staron AA, Godlewska R, Bocian Ostrzycka K, Piekowska K, aniewski P, Bujnicki J, Van Putten J, Jagusztyn Krynicka E. 2014. Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA. PLoS One. 9(9), e106247.
LibreCat: https://research-explorer.ista.ac.at/record/1894
DOI: 10.1371/journal.pone.0106247

Ganguly A, Petrov T, Koeppl H. 2014. Markov chain aggregation and its applications to combinatorial reaction networks. Journal of Mathematical Biology. 69(3), 767–797.
LibreCat: https://research-explorer.ista.ac.at/record/2056
DOI: 10.1007/s00285-013-0738-7

Lagator M, Morgan A, Neve P, Colegrave N. 2014. Role of sex and migration in adaptation to sink environments. Evolution. 68(8), 2296–2305.
LibreCat: https://research-explorer.ista.ac.at/record/2083
DOI: 10.1111/evo.12440

Lagator M, Morgan A, Neve P, Colegrave N. 2014. Data from: Role of sex and migration in adaptation to sink environments, Dryad,10.5061/dryad.s42n1 .
LibreCat: https://research-explorer.ista.ac.at/record/9747
DOI: 10.5061/dryad.s42n1

Lagator M, Colegrave N, Neve P. 2014. Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Proceedings of the Royal Society of London Series B Biological Sciences. 281(1794), 20141679.
LibreCat: https://research-explorer.ista.ac.at/record/2036
DOI: 10.1098/rspb.2014.1679

Lagator M, Colegrave N, Neve P. 2014. Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses, Dryad,10.5061/dryad.85dn7 .
LibreCat: https://research-explorer.ista.ac.at/record/9741
DOI: 10.5061/dryad.85dn7

Dhar R, Bergmiller T, Wagner A. 2014. Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. Evolution. 68(6), 1775–1791.
LibreCat: https://research-explorer.ista.ac.at/record/9931
DOI: 10.1111/evo.12373
PMID: 24495000