Wielgoss, S., Bergmiller, T., Bischofberger, A. M., &; Hall, A. R. (2015). Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria. Dryad.https://doi.org/10.5061/dryad.cj910 

Tugrul, M., Paixao, T., Barton, N. H., &; Tkadik, G. (2015). Dynamics of transcription factor binding site evolution. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1005639 

Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., &; Petrov, T. (2015). Model checking gene regulatory networks. Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, London, United Kingdom: Springer.https://doi.org/10.1007/978-3-662-46681-0_47 

Grabowska, A., Wywia, E., Dunin Horkawicz, S., asica, A., Wösten, M., Nagy-Staron, A. A.,https://doi.org/10.1371/journal.pone.0106247__Jagusztyn Krynicka, E. (2014). Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0106247 

Ganguly, A., Petrov, T., &; Koeppl, H. (2014). Markov chain aggregation and its applications to combinatorial reaction networks. Journal of Mathematical Biology. Springer.https://doi.org/10.1007/s00285-013-0738-7 

Lagator, M., Morgan, A., Neve, P., &; Colegrave, N. (2014). Role of sex and migration in adaptation to sink environments. Evolution. Wiley.https://doi.org/10.1111/evo.12440 

Lagator, M., Morgan, A., Neve, P., &; Colegrave, N. (2014). Data from: Role of sex and migration in adaptation to sink environments. Dryad.https://doi.org/10.5061/dryad.s42n1 

Lagator, M., Colegrave, N., &; Neve, P. (2014). Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Proceedings of the Royal Society of London Series B Biological Sciences. Royal Society, The.https://doi.org/10.1098/rspb.2014.1679 

Lagator, M., Colegrave, N., &; Neve, P. (2014). Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Dryad.https://doi.org/10.5061/dryad.85dn7 

Dhar, R., Bergmiller, T., &; Wagner, A. (2014). Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. Evolution. Wiley.https://doi.org/10.1111/evo.12373 

Dhar, R., Bergmiller, T., &; Wagner, A. (2014). Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. Dryad.https://doi.org/10.5061/dryad.jc402 

Milenkovi, I., Petrov, T., &; Kovács, G. (2014). Patterns of hippocampal tau pathology differentiate neurodegenerative dementias. Dementia and Geriatric Cognitive Disorders. Karger Publishers.https://doi.org/10.1159/000365548 

Barton, N. H., &; Paixao, T. (2013). Can quantitative and population genetics help us understand evolutionary computation? In Proceedings of the 15th annual conference on Genetic and evolutionary computation (pp. 1573–1580). Amsterdam, Netherlands: ACM.https://doi.org/10.1145/2463372.2463568 

Long, H., Paixao, T., Azevedo, R., &; Zufall, R. (2013). Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.113.153536 

Paixao, T., &; Barton, N. H. (2013). A variance decomposition approach to the analysis of genetic algorithms. In Proceedings of the 15th annual conference on Genetic and evolutionary computation (pp. 845–852). Amsterdam, Netherlands: ACM.https://doi.org/10.1145/2463372.2463470 

Wakamoto, Y., Dhar, N., Chait, R. P., Schneider, K., Signorino Gelo, F., Leibler, S., &; Mckinney, J. (2013). Dynamic persistence of antibiotic-stressed mycobacteria. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.1229858 

Refardt, D., Bergmiller, T., &; Kümmerli, R. (2013). Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences. The Royal Society.https://doi.org/10.1098/rspb.2012.3035 

Refardt, D., Bergmiller, T., &; Kümmerli, R. (2013). Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. Dryad.https://doi.org/10.5061/dryad.b1q2n 

Henzinger, T. A., &; Mateescu, M. (2012). The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. IEEE.https://doi.org/10.1109/TCBB.2012.91 

Hadizadeh Yazdi, N., Guet, C. C., Johnson, R., &; Marko, J. (2012). Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. Wiley-Blackwell.https://doi.org/10.1111/mmi.12071