Lyons, David B., Amy Briffa, Shengbo He, Jaemyung Choi, Elizabeth Hollwey, Jack Colicchio, Ian Anderson, Xiaoqi Feng, Martin Howard, and Daniel Zilberman. “Extensive de Novo Activity Stabilizes Epigenetic Inheritance of CG Methylation in Arabidopsis Transposons.”https://doi.org/10.1016/j.celrep.2023.112132__Cell Reports. Elsevier, 2023.https://doi.org/10.1016/j.celrep.2023.112132 .
LibreCat: https://research-explorer.ista.ac.at/record/12672
DOI: 10.1016/j.celrep.2023.112132
WoS: 000944921600001

Briffa, Amy, Elizabeth Hollwey, Zaigham Shahzad, Jonathan D. Moore, David B. Lyons, Martin Howard, and Daniel Zilberman. “Millennia-Long Epigenetic Fluctuations Generate Intragenic DNA Methylation Variance in Arabidopsis Populations.”https://doi.org/10.1016/j.cels.2023.10.007__Cell Systems. Elsevier, 2023.https://doi.org/10.1016/j.cels.2023.10.007 .
LibreCat: https://research-explorer.ista.ac.at/record/14551
DOI: 10.1016/j.cels.2023.10.007
PMID: 37944515

Hollwey, Elizabeth, Amy Briffa, Martin Howard, and Daniel Zilberman. “Concepts, Mechanisms and Implications of Long-Term Epigenetic Inheritance.”https://doi.org/10.1016/j.gde.2023.102087__Current Opinion in Genetics and Development. Elsevier, 2023.https://doi.org/10.1016/j.gde.2023.102087 .
LibreCat: https://research-explorer.ista.ac.at/record/13965
DOI: 10.1016/j.gde.2023.102087
WoS: 001047020200001
PMID: 37441873

Rodrigues, Jessica A., Ping-Hung Hsieh, Deling Ruan, Toshiro Nishimura, Manoj K. Sharma, Rita Sharma, XinYi Ye, et al. “Divergence among Rice Cultivars Reveals Roles for Transposition and Epimutation in Ongoing Evolution of Genomic Imprinting.”https://doi.org/10.1073/pnas.2104445118__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2021.https://doi.org/10.1073/pnas.2104445118 .
LibreCat: https://research-explorer.ista.ac.at/record/9877
DOI: 10.1073/pnas.2104445118
WoS: 000685037700012
PMID: 34272287

Choi, Jaemyung, David B Lyons, and Daniel Zilberman. “Histonehttps://doi.org/10.7554/elife.72676__Prevents Non-CG Methylation-Mediated Small RNA Biogenesis in Arabidopsis Heterochromatin.”https://doi.org/10.7554/elife.72676__ELife. eLife Sciences Publications, 2021.https://doi.org/10.7554/elife.72676 .
LibreCat: https://research-explorer.ista.ac.at/record/10533
DOI: 10.7554/elife.72676
WoS: 000754832000001
PMID: 34850679

Choi, Jaemyung, David B. Lyons, M. Yvonne Kim, Jonathan D. Moore, and Daniel Zilberman. “DNA Methylation and Histonehttps://doi.org/10.1016/j.molcel.2019.10.011__Jointly Repress Transposable Elements and Aberrant Intragenic Transcripts.”https://doi.org/10.1016/j.molcel.2019.10.011__Molecular Cell. Elsevier, 2020.https://doi.org/10.1016/j.molcel.2019.10.011 .
LibreCat: https://research-explorer.ista.ac.at/record/9526
DOI: 10.1016/j.molcel.2019.10.011
PMID: 31732458

Kim, M. Yvonne, Akemi Ono, Stefan Scholten, Tetsu Kinoshita, Daniel Zilberman, Takashi Okamoto, and Robert L. Fischer. “DNA Demethylation by ROa in Rice Vegetative Cells Promotes Methylation in Sperm.”https://doi.org/10.1073/pnas.1821435116__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2019.https://doi.org/10.1073/pnas.1821435116 .
LibreCat: https://research-explorer.ista.ac.at/record/9460
DOI: 10.1073/pnas.1821435116
PMID: 31000601

Harris, Keith D., James P. B. Lloyd, Katherine Domb, Daniel Zilberman, and Assaf Zemach. “DNA Methylation Is Maintained with High Fidelity in the Honey Bee Germline and Exhibits Global Non-Functional Fluctuations during Somatic Development.”https://doi.org/10.1186/s13072-019-0307-4__Epigenetics and Chromatin. Springer Nature, 2019.https://doi.org/10.1186/s13072-019-0307-4 .
LibreCat: https://research-explorer.ista.ac.at/record/9530
DOI: 10.1186/s13072-019-0307-4
PMID: 31601251

Frost, Jennifer M., M. Yvonne Kim, Guen Tae Park, Ping-Hung Hsieh, Miyuki Nakamura, Samuel J. H. Lin, Hyunjin Yoo, et al. “FACT Complex Is Required for DNA Demethylation at Heterochromatin during Reproduction in Arabidopsis.”https://doi.org/10.1073/pnas.1713333115__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1713333115 .
LibreCat: https://research-explorer.ista.ac.at/record/9471
DOI: 10.1073/pnas.1713333115
PMID: 29712855

Lyons, David B, and Daniel Zilberman. “DDM1 and Lsh Remodelers Allow Methylation of DNA Wrapped in Nucleosomes.”https://doi.org/10.7554/elife.30674__ELife. eLife Sciences Publications, 2017.https://doi.org/10.7554/elife.30674 .
LibreCat: https://research-explorer.ista.ac.at/record/9445
DOI: 10.7554/elife.30674
PMID: 29140247

Zilberman, Daniel. “An Evolutionary Case for Functional Gene Body Methylation in Plants and Animals.”https://doi.org/10.1186/s13059-017-1230-2__Genome Biology. Springer Nature, 2017.https://doi.org/10.1186/s13059-017-1230-2 .
LibreCat: https://research-explorer.ista.ac.at/record/9506
DOI: 10.1186/s13059-017-1230-2
PMID: 28486944

Huff, Jason T., Daniel Zilberman, and Scott W. Roy. “Mechanism for DNA Transposons to Generate Introns on Genomic Scales.”https://doi.org/10.1038/nature20110__Nature. Springer Nature , 2016.https://doi.org/10.1038/nature20110 .
LibreCat: https://research-explorer.ista.ac.at/record/9456
DOI: 10.1038/nature20110
PMID: 27760113

Park, Kyunghyuk, M. Yvonne Kim, Martin Vickers, Jin-Sup Park, Youbong Hyun, Takashi Okamoto, Daniel Zilberman, et al. “DNA Demethylation Is Initiated in the Central Cells of Arabidopsis and Rice.”https://doi.org/10.1073/pnas.1619047114__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2016.https://doi.org/10.1073/pnas.1619047114 .
LibreCat: https://research-explorer.ista.ac.at/record/9477
DOI: 10.1073/pnas.1619047114
PMID: 27956642

Hsieh, Ping-Hung, Shengbo He, Toby Buttress, Hongbo Gao, Matthew Couchman, Robert L. Fischer, Daniel Zilberman, and Xiaoqi Feng. “Arabidopsis Male Sexual Lineage Exhibits More Robust Maintenance of CG Methylation than Somatic Tissues.”https://doi.org/10.1073/pnas.1619074114__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2016.https://doi.org/10.1073/pnas.1619074114 .
LibreCat: https://research-explorer.ista.ac.at/record/9473
DOI: 10.1073/pnas.1619074114
PMID: 27956643

Rodrigues, Jessica A., and Daniel Zilberman. “Evolution and Function of Genomic Imprinting in Plants.”https://doi.org/10.1101/gad.269902.115__Genes and Development. Cold Spring Harbor Laboratory Press, 2015.https://doi.org/10.1101/gad.269902.115 .
LibreCat: https://research-explorer.ista.ac.at/record/9532
DOI: 10.1101/gad.269902.115
PMID: 26680300

Kim, M. Yvonne, and Daniel Zilberman. “DNA Methylation as a System of Plant Genomic Immunity.”https://doi.org/10.1016/j.tplants.2014.01.014__Trends in Plant Science. Elsevier, 2014.https://doi.org/10.1016/j.tplants.2014.01.014 .
LibreCat: https://research-explorer.ista.ac.at/record/9519
DOI: 10.1016/j.tplants.2014.01.014
PMID: 24618094 

Huff, Jason T., and Daniel Zilberman. “Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes.”https://doi.org/10.1016/j.cell.2014.01.029__Cell. Elsevier, 2014.https://doi.org/10.1016/j.cell.2014.01.029 .
LibreCat: https://research-explorer.ista.ac.at/record/9458
DOI: 10.1016/j.cell.2014.01.029
PMID: 24630728

Mérai, Zsuzsanna, Nina Chumak, Marcelina García-Aguilar, Tzung-Fu Hsieh, Toshiro Nishimura, Vera K. Schoft, János Bindics, et al. “The AAA-ATPase Molecular Chaperone Cd/ Disassembles Sumoylated Centromeres, Decondenses Heterochromatin, and Activates Ribosomal RNA Genes.”https://doi.org/10.1073/pnas.1418564111__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2014.https://doi.org/10.1073/pnas.1418564111 .
LibreCat: https://research-explorer.ista.ac.at/record/9479
DOI: 10.1073/pnas.1418564111
PMID: 25344531

Zemach, Assaf, M. Yvonne Kim, Ping-Hung Hsieh, Devin Coleman-Derr, Leor Eshed-Williams, Ka Thao, Stacey L. Harmer, and Daniel Zilberman. “The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access -Containing Heterochromatin.”https://doi.org/10.1016/j.cell.2013.02.033__Cell. Elsevier, 2013.https://doi.org/10.1016/j.cell.2013.02.033 .
LibreCat: https://research-explorer.ista.ac.at/record/9459
DOI: 10.1016/j.cell.2013.02.033
PMID: 23540698

Rodrigues, Jessica A., Randy Ruan, Toshiro Nishimura, Manoj K. Sharma, Rita Sharma, Pamela C Ronald, Robert L. Fischer, and Daniel Zilberman. “Imprinted Expression of Genes and Small RNA Is Associated with Localized Hypomethylation of the Maternal Genome in Rice Endosperm.”https://doi.org/10.1073/pnas.1306164110__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2013.https://doi.org/10.1073/pnas.1306164110 .
LibreCat: https://research-explorer.ista.ac.at/record/9481
DOI: 10.1073/pnas.1306164110
PMID: 23613580