Feng, X., Zilberman, D., &; Dickinson, H. (2013). A conversation across generations: Soma-germ cell crosstalk in plants. Developmental Cell. Elsevier.https://doi.org/10.1016/j.devcel.2013.01.014 
LibreCat: https://research-explorer.ista.ac.at/record/9520
DOI: 10.1016/j.devcel.2013.01.014
PMID: 23410937

Ibarra, C. A., Feng, X., Schoft, V. K., Hsieh, T.-F., Uzawa, R., Rodrigues, J. A.,https://doi.org/10.1126/science.1224839__Zilberman, D. (2012). Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.1224839 
LibreCat: https://research-explorer.ista.ac.at/record/9451
DOI: 10.1126/science.1224839
PMID: 22984074

Coleman-Derr, D., &; Zilberman, D. (2012). DNA methylation, A.Z, and the regulation of constitutive expression. Cold Spring Harbor Symposia on Quantitative Biology. Cold Spring Harbor Laboratory Press.https://doi.org/10.1101/sqb.2012.77.014944 
LibreCat: https://research-explorer.ista.ac.at/record/9535
DOI: 10.1101/sqb.2012.77.014944
PMID: 23250988

Kim, S. Y., Lee, J., Eshed-Williams, L., Zilberman, D., &; Sung, Z. R. (2012). EM and PR cooperate to repress key regulators of Arabidopsis development. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1002512 
LibreCat: https://research-explorer.ista.ac.at/record/9499
DOI: 10.1371/journal.pgen.1002512
PMID: 22457632

Coleman-Derr, D., &; Zilberman, D. (2012). Deposition of histone variant A.Z within gene bodies regulates responsive genes. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1002988 
LibreCat: https://research-explorer.ista.ac.at/record/9497
DOI: 10.1371/journal.pgen.1002988
PMID: 23071449

Huff, J. T., &; Zilberman, D. (2012). Regulation of biological accuracy, precision, and memory by plant chromatin organization. Current Opinion in Genetics and Development. Elsevier.https://doi.org/10.1016/j.gde.2012.01.007 
LibreCat: https://research-explorer.ista.ac.at/record/9528
DOI: 10.1016/j.gde.2012.01.007
PMID: 22336527

Hsieh, T.-F., Shin, J., Uzawa, R., Silva, P., Cohen, S., Bauer, M. J.,https://doi.org/10.1073/pnas.1019273108__Fischer, R. L. (2011). Regulation of imprinted gene expression in Arabidopsis endosperm. Proceedings of the National Academy of Sciences. National Academy of Sciences.https://doi.org/10.1073/pnas.1019273108 
LibreCat: https://research-explorer.ista.ac.at/record/9483
DOI: 10.1073/pnas.1019273108
PMID: 21257907

Zilberman, D. (2011). Balancing parental contributions in plant embryonic gene activation. Developmental Cell (Vol. 20, pp. 735–736). Elsevier.https://doi.org/10.1016/j.devcel.2011.05.018 
LibreCat: https://research-explorer.ista.ac.at/record/9522
DOI: 10.1016/j.devcel.2011.05.018
PMID: 21664571

Zemach, A., Kim, M. Y., Silva, P., Rodrigues, J. A., Dotson, B., Brooks, M. D., &; Zilberman, D. (2010). Local DNA hypomethylation activates genes in rice endosperm. Proceedings of the National Academy of Sciences. National Academy of Sciences.https://doi.org/10.1073/pnas.1009695107 
LibreCat: https://research-explorer.ista.ac.at/record/9485
DOI: 10.1073/pnas.1009695107
PMID: 20937895

Zemach, A., &; Zilberman, D. (2010). Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Current Biology. Elsevier.https://doi.org/10.1016/j.cub.2010.07.007 
LibreCat: https://research-explorer.ista.ac.at/record/9489
DOI: 10.1016/j.cub.2010.07.007
PMID: 20833323

Zemach, A., McDaniel, I. E., Silva, P., &; Zilberman, D. (2010). Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.1186366 
LibreCat: https://research-explorer.ista.ac.at/record/9452
DOI: 10.1126/science.1186366
PMID: 20395474 

Hsieh, T.-F., Ibarra, C. A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer, R. L., &; Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.1172417 
LibreCat: https://research-explorer.ista.ac.at/record/9453
DOI: 10.1126/science.1172417
PMID: 19520962

Zilberman, D. (2008). The evolving functions of DNA methylation. Current Opinion in Plant Biology. Elsevier .https://doi.org/10.1016/j.pbi.2008.07.004 
LibreCat: https://research-explorer.ista.ac.at/record/9537
DOI: 10.1016/j.pbi.2008.07.004
PMID: 18774331

Zilberman, D., Coleman-Derr, D., Ballinger, T., &; Henikoff, S. (2008). Histone A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. Springer Nature.https://doi.org/10.1038/nature07324 
LibreCat: https://research-explorer.ista.ac.at/record/9457
DOI: 10.1038/nature07324
PMID: 18815594

Penterman, J., Zilberman, D., Huh, J. H., Ballinger, T., Henikoff, S., &; Fischer, R. L. (2007). DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy of Sciences. National Academy of Sciences.https://doi.org/10.1073/pnas.0701861104 
LibreCat: https://research-explorer.ista.ac.at/record/9487
DOI: 10.1073/pnas.0701861104
PMID: 17409185

Zilberman, D. (2007). The human promoter methylome. Nature Genetics (Vol. 39, pp. 442–443). Nature Publishing Group.https://doi.org/10.1038/ng0407-442 
LibreCat: https://research-explorer.ista.ac.at/record/9504
DOI: 10.1038/ng0407-442
PMID: 17392803

Zilberman, D., &; Henikoff, S. (2007). Genome-wide analysis of DNA methylation patterns. Development. The Company of Biologists.https://doi.org/10.1242/dev.001131 
LibreCat: https://research-explorer.ista.ac.at/record/9524
DOI: 10.1242/dev.001131
PMID: 17928417

Zilberman, D., Gehring, M., Tran, R. K., Ballinger, T., &; Henikoff, S. (2006). Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics. Nature Publishing Group.https://doi.org/10.1038/ng1929 
LibreCat: https://research-explorer.ista.ac.at/record/9505
DOI: 10.1038/ng1929
PMID: 17128275

Tran, R. K., Henikoff, J. G., Zilberman, D., Ditt, R. F., Jacobsen, S. E., &; Henikoff, S. (2005). DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. Elsevier.https://doi.org/10.1016/j.cub.2005.01.008 
LibreCat: https://research-explorer.ista.ac.at/record/9491
DOI: 10.1016/j.cub.2005.01.008
PMID: 15668172 

Tran, R. K., Zilberman, D., de Bustos, C., Ditt, R. F., Henikoff, J. G., Lindroth, A. M.,https://doi.org/10.1186/gb-2005-6-11-r90__Henikoff, S. (2005). Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. Springer Nature.https://doi.org/10.1186/gb-2005-6-11-r90 
LibreCat: https://research-explorer.ista.ac.at/record/9514
DOI: 10.1186/gb-2005-6-11-r90
PMID: 16277745