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Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “A Statistical Summary of Segment Libraries and Sequencing Results.”https://doi.org/10.1371/journal.pgen.1008079.s011__Public Library of Science, 2019.https://doi.org/10.1371/journal.pgen.1008079.s011 .
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Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “Multiple Alignment of Hi Orthologues.”https://doi.org/10.1371/journal.pgen.1008079.s010__Public Library of Science, 2019.https://doi.org/10.1371/journal.pgen.1008079.s010 .
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Noda-García, Lianet, Dan Davidi, Elisa Korenblum, Assaf Elazar, Ekaterina Putintseva, Asaph Aharoni, and Dan S. Tawfik. “Chance and Pleiotropy Dominate Genetic Diversity in Complex Bacterial Environments.”https://doi.org/10.1038/s41564-019-0412-y__Nature Microbiology. Springer Nature, 2019.https://doi.org/10.1038/s41564-019-0412-y .
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Sigalova, Olga, Andrei Chaplin, Olga Bochkareva, Pavel Shelyakin, Vsevolod Filaretov, Evgeny Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 11 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808772.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808772.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 10 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808760.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808760.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 20 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808850.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808850.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 15 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808802.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808802.v1 .
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Sigalova, Olga M., Andrei V Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 16 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808814.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808814.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 17 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808820.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808820.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 18 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808826.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808826.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 19 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808835.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808835.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 1 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808841.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808841.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.1186/s12864-019-6059-5__BMC Genomics. BioMed Central, 2019.https://doi.org/10.1186/s12864-019-6059-5 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 21 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808859.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808859.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 9 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808907.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808907.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 2 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808865.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808865.v1 .
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Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 5 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808886.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808886.v1 .
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Garriga, Edgar, Paolo Di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri, Athanasios Baltzis, Hafid Laayouni, Fyodor Kondrashov, Evan Floden, and Cedric Notredame. “Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method.”https://doi.org/10.1038/s41587-019-0333-6__Nature Biotechnology. Springer Nature, 2019.https://doi.org/10.1038/s41587-019-0333-6 .
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Garriga, Edgar, Paolo di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri, Athanasios Baltzis, Hafid Laayouni, Fyodor Kondrashov, Evan Floden, and Cedric Notredame. “Fast and Accurate Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method.”https://doi.org/10.5281/ZENODO.2025846__Zenodo, 2018.https://doi.org/10.5281/ZENODO.2025846 .
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Hönigschmid, Peter, Nadya Bykova, René Schneider, Dmitry Ivankov, and Dmitrij Frishman. “Evolutionary Interplay between Symbiotic Relationships and Patterns of Signal Peptide Gain and Loss.”https://doi.org/10.1093/gbe/evy049__Genome Biology and Evolution. Oxford University Press, 2018.https://doi.org/10.1093/gbe/evy049 .
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Kotlobay, Alexey A., Karen Sarkisyan, Yuliana A. Mokrushina, Marina Marcet-Houben, Ekaterina O. Serebrovskaya, Nadezhda M. Markina, Louisa Gonzalez Somermeyer, et al. “Genetically Encodable Bioluminescent System from Fungi.”https://doi.org/10.1073/pnas.1803615115__Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1803615115 .
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Zapata, Luis, Oriol Pich, Luis Serrano, Fyodor Kondrashov, Stephan Ossowski, and Martin Schaefer. “Negative Selection in Tumor Genome Evolution Acts on Essential Cellular Functions and the Immunopeptidome.”https://doi.org/10.1186/s13059-018-1434-0__Genome Biology. BioMed Central, 2018.https://doi.org/10.1186/s13059-018-1434-0 .
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Zapata, Luis, Oriol Pich, Luis Serrano, Fyodor Kondrashov, Stephan Ossowski, and Martin Schaefer. “Additional File 2: Of Negative Selection in Tumor Genome Evolution Acts on Essential Cellular Functions and the Immunopeptidome.”https://doi.org/10.6084/m9.figshare.6401414.v1__Springer Nature, 2018.https://doi.org/10.6084/m9.figshare.6401414.v1 .
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Zapata, Luis, Oriol Pich, Luis Serrano, Fyodor Kondrashov, Stephan Ossowski, and Martin Schaefer. “Additional File 1: Of Negative Selection in Tumor Genome Evolution Acts on Essential Cellular Functions and the Immunopeptidome.”https://doi.org/10.6084/m9.figshare.6401390.v1__Springer Nature, 2018.https://doi.org/10.6084/m9.figshare.6401390.v1 .
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Usmanova, Dinara R, Natalya S Bogatyreva, Joan Ariño Bernad, Aleksandra A Eremina, Anastasiya A Gorshkova, German M Kanevskiy, Lyubov R Lonishin, et al. “Self-Consistency Test Reveals Systematic Bias in Programs for Prediction Change of Stability upon Mutation.”https://doi.org/10.1093/bioinformatics/bty340__Bioinformatics. Oxford University Press , 2018.https://doi.org/10.1093/bioinformatics/bty340 .
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Pavan, Ana, Felipe Martins, Fabrício Santos, Albert Ditchfield, and Rodrigo A Fernandes Redondo. “Patterns of Diversification in Two Species of Short-Tailed Bats (Carollia Gray, 1838): The Effects of Historical Fragmentation of Brazilian Rainforests.”https://doi.org/10.1111/j.1095-8312.2010.01601.x__Biological Journal of the Linnean Society. Wiley-Blackwell, 2011.https://doi.org/10.1111/j.1095-8312.2010.01601.x .
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