Yurtseven, Alper, Sofia Buyanova, Amay Ajaykumar A. Agrawal, Olga Bochkareva, and Olga V V. Kalinina. “Machine Learning and Phylogenetic Analysis Allow for Predicting Antibiotic Resistance in M. Tuberculosis.”https://doi.org/10.1186/s12866-023-03147-7__BMC Microbiology. Springer Nature, 2023.https://doi.org/10.1186/s12866-023-03147-7 .
LibreCat: https://research-explorer.ista.ac.at/record/14716
DOI: 10.1186/s12866-023-03147-7
PMID: 38124060

Zabelkin, Alexey, Yulia Yakovleva, Olga Bochkareva, and Nikita Alexeev. “PaReBrick: PArallel REarrangements and BReaks Identification Toolkit.”https://doi.org/10.1093/bioinformatics/btab691__Bioinformatics. Oxford Academic, 2022.https://doi.org/10.1093/bioinformatics/btab691 .
LibreCat: https://research-explorer.ista.ac.at/record/10927
DOI: 10.1093/bioinformatics/btab691
WoS: 000743380100008

Knyazev, Sergey, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, et al. “Unlocking Capacities of Genomics for the COVID-19 Response and Future Pandemics.”https://doi.org/10.1038/s41592-022-01444-z__Nature Methods. Springer Nature, 2022.https://doi.org/10.1038/s41592-022-01444-z .
LibreCat: https://research-explorer.ista.ac.at/record/11187
DOI: 10.1038/s41592-022-01444-z
WoS: 000781199600011
PMID: 35396471

Dranenko, NO, MN Tutukina, MS Gelfand, Fyodor Kondrashov, and Olga Bochkareva. “Chromosome-Encoded IpaH Ubiquitin Ligases Indicate Non-Human Enteroinvasive Escherichia.”https://doi.org/10.1038/s41598-022-10827-3__Scientific Reports. Springer Nature, 2022.https://doi.org/10.1038/s41598-022-10827-3 .
LibreCat: https://research-explorer.ista.ac.at/record/11344
DOI: 10.1038/s41598-022-10827-3
WoS: 000788639400032
PMID: 35477739

Gonzalez Somermeyer, Louisa, Aubin Fleiss, Alexander S Mishin, Nina G Bozhanova, Anna A Igolkina, Jens Meiler, Maria-Elisenda Alaball Pujol, Ekaterina V Putintseva, Karen S Sarkisyan, and Fyodor Kondrashov. “Heterogeneity of the GFP Fitness Landscape and Data-Driven Protein Design.”https://doi.org/10.7554/elife.75842__ELife. eLife Sciences Publications, 2022.https://doi.org/10.7554/elife.75842 .
LibreCat: https://research-explorer.ista.ac.at/record/11448
DOI: 10.7554/elife.75842
WoS: 000799197200001

Zhang, Runxuan, Richard Kuo, Max Coulter, Cristiane P.G. Calixto, Juan Carlos Entizne, Wenbin Guo, Yamile Marquez, et al. “A High-Resolution Single-Molecule Sequencing-Based Arabidopsis Transcriptome Using Novel Methods of Iso-Seq Analysis.”https://doi.org/10.1186/s13059-022-02711-0__Genome Biology. BioMed Central, 2022.https://doi.org/10.1186/s13059-022-02711-0 .
LibreCat: https://research-explorer.ista.ac.at/record/11587
DOI: 10.1186/s13059-022-02711-0
WoS: 000821915500002

Byazrova, Maria G., Ekaterina A. Astakhova, Aygul Minnegalieva, Maria M. Sukhova, Artem A. Mikhailov, Alexey G. Prilipov, Andrey A. Gorchakov, and Alexander V. Filatov. “Anti-Ad26 Humoral Immunity Does Not Compromise SARS-COV-2 Neutralizing Antibody Responses Following Gam-COVID-Vac Booster Vaccination.”https://doi.org/10.1038/s41541-022-00566-x__Npj Vaccines. Springer Nature, 2022.https://doi.org/10.1038/s41541-022-00566-x .
LibreCat: https://research-explorer.ista.ac.at/record/12131
DOI: 10.1038/s41541-022-00566-x
WoS: 000884278600004
PMID: 36379998

Baumgartner, Maximilian, Rebecca Zirnbauer, Sabine Schlager, Daniel Mertens, Nikolaus Gasche, Barbara Sladek, Craig Herbold, et al. “Atypical Enteropathogenic E. Coli Are Associated with Disease Activity in Ulcerative Colitis.”https://doi.org/10.1080/19490976.2022.2143218__Gut Microbes. Taylor &; Francis, 2022.https://doi.org/10.1080/19490976.2022.2143218 .
LibreCat: https://research-explorer.ista.ac.at/record/12173
DOI: 10.1080/19490976.2022.2143218
WoS: 000889180100001

Chhugani, Karishma, Alina Frolova, Yuriy Salyha, Andrada Fiscutean, Oksana Zlenko, Sanita Reinsone, Walter W. Wolfsberger, et al. “Remote Opportunities for Scholars in Ukraine.”https://doi.org/10.1126/science.adg0797__Science. American Association for the Advancement of Science, 2022.https://doi.org/10.1126/science.adg0797 .
LibreCat: https://research-explorer.ista.ac.at/record/12116
DOI: 10.1126/science.adg0797
WoS: 000963463700023

Pivoluska, Matej, Martin Plesch, Máté Farkas, Natalia Ruzickova, Clara Flegel, Natalia Herrera Valencia, Will Mccutcheon, Mehul Malik, and Edgar A. Aguilar. “Semi-Device-Independent Random Number Generation with Flexible Assumptions.”https://doi.org/10.1038/s41534-021-00387-1__Npj Quantum Information. Springer Nature, 2021.https://doi.org/10.1038/s41534-021-00387-1 .
LibreCat: https://research-explorer.ista.ac.at/record/9255
DOI: 10.1038/s41534-021-00387-1
WoS: 000629173100001

Seferbekova, Zaira, Alexey Zabelkin, Yulia Yakovleva, Robert Afasizhev, Natalia O. Dranenko, Nikita Alexeev, Mikhail S. Gelfand, and Olga Bochkareva. “High Rates of Genome Rearrangements and Pathogenicity of Shigella Spp.”https://doi.org/10.3389/fmicb.2021.628622__Frontiers in Microbiology. Frontiers, 2021.https://doi.org/10.3389/fmicb.2021.628622 .
LibreCat: https://research-explorer.ista.ac.at/record/9380
DOI: 10.3389/fmicb.2021.628622
WoS: 000643713300001

Slavskii, Sergei A., Ivan A. Kuznetsov, Tatiana I. Shashkova, Georgii A. Bazykin, Tatiana I. Axenovich, Fyodor Kondrashov, and Yurii S. Aulchenko. “The Limits of Normal Approximation for Adult Height.”https://doi.org/10.1038/s41431-021-00836-7__European Journal of Human Genetics. Springer Nature, 2021.https://doi.org/10.1038/s41431-021-00836-7 .
LibreCat: https://research-explorer.ista.ac.at/record/9910
DOI: 10.1038/s41431-021-00836-7
WoS: 000625853200001
PMID: 33664501

Rella, Simon, Yuliya A. Kulikova, Emmanouil T. Dermitzakis, and Fyodor Kondrashov. “Rates of SARS-CoV-2 Transmission and Vaccination Impact the Fate of Vaccine-Resistant Strains.”https://doi.org/10.1038/s41598-021-95025-3__Scientific Reports. Springer Nature, 2021.https://doi.org/10.1038/s41598-021-95025-3 .
LibreCat: https://research-explorer.ista.ac.at/record/9905
DOI: 10.1038/s41598-021-95025-3
WoS: 000683329100001
PMID: 34330988

Nimeth, Barbara Anna, Stefan Riegler, and Maria Kalyna. “Alternative Splicing and DNA Damage Response in Plants.”https://doi.org/10.3389/fpls.2020.00091__Frontiers in Plant Science. Frontiers, 2020.https://doi.org/10.3389/fpls.2020.00091 .
LibreCat: https://research-explorer.ista.ac.at/record/7603
DOI: 10.3389/fpls.2020.00091
WoS: 000518903600001

Plesch, Martin, Samuel Plesník, and Natalia Ruzickova. “The IYPT and the ‘Ring Oiler’ Problem.”https://doi.org/10.1088/1361-6404/ab6414__European Journal of Physics. IOP Publishing, 2020.https://doi.org/10.1088/1361-6404/ab6414 .
LibreCat: https://research-explorer.ista.ac.at/record/7622
DOI: 10.1088/1361-6404/ab6414
WoS: 000537425400001
arXiv: 1910.03290

Uroshlev, Leonid A., Eldar T. Abdullaev, Iren R. Umarova, Irina A. Il’Icheva, Larisa A. Panchenko, Robert V. Polozov, Fyodor Kondrashov, Yury D. Nechipurenko, and Sergei L. Grokhovsky. “A Method for Identification of the Methylation Level of CpG Islands from NGS Data.”https://doi.org/10.1038/s41598-020-65406-1__Scientific Reports. Springer Nature, 2020.https://doi.org/10.1038/s41598-020-65406-1 .
LibreCat: https://research-explorer.ista.ac.at/record/7931
DOI: 10.1038/s41598-020-65406-1
WoS: 000560774200007

Mukba, S. A., Petr Vlasov, P. M. Kolosov, E. Y. Shuvalova, T. V. Egorova, and E. Z. Alkalaeva. “Expanding the Genetic Code: Unnatural Base Pairs in Biological Systems.”https://doi.org/10.1134/S0026893320040111__Molecular Biology. Springer Nature, 2020.https://doi.org/10.1134/S0026893320040111 .
LibreCat: https://research-explorer.ista.ac.at/record/8320
DOI: 10.1134/S0026893320040111
WoS: 000562110300001

Mukba, S. A., Petr Vlasov, P. M. Kolosov, E. Y. Shuvalova, T. V. Egorova, and E. Z. Alkalaeva. “Expanding the genetic code: Unnatural base pairs in biological systems.”https://doi.org/10.31857/S0026898420040126__Molekuliarnaia biologiia. Russian Academy of Sciences, 2020.https://doi.org/10.31857/S0026898420040126 .
LibreCat: https://research-explorer.ista.ac.at/record/8321
DOI: 10.31857/S0026898420040126
PMID: 32799218

Esteban, Laura A, Lyubov R Lonishin, Daniil M Bobrovskiy, Gregory Leleytner, Natalya S Bogatyreva, Fyodor Kondrashov, and Dmitry Nhttps://doi.org/10.1093/bioinformatics/btz841__Ivankov. “HypercubeME: Two Hundred Million Combinatorially Complete Datasets from a Single Experiment.”https://doi.org/10.1093/bioinformatics/btz841__Bioinformatics. Oxford Academic, 2020.https://doi.org/10.1093/bioinformatics/btz841 .
LibreCat: https://research-explorer.ista.ac.at/record/8645
DOI: 10.1093/bioinformatics/btz841
WoS: 000538696800054
PMID: 31742320

Galan, Silvia, Nick N Machnik, Kai Kruse, Noelia Díaz, Marc A Marti-Renom, and Juan M Vaquerizas. “CHESS Enables Quantitative Comparison of Chromatin Contact Data and Automatic Feature Extraction.”https://doi.org/10.1038/s41588-020-00712-y__Nature Genetics. Springer Nature, 2020.https://doi.org/10.1038/s41588-020-00712-y .
LibreCat: https://research-explorer.ista.ac.at/record/8707
DOI: 10.1038/s41588-020-00712-y
WoS: 000579693500004
PMID: 33077914