Misun, Patrick, Axel Birchler, Moritz Lang, Andreas Hierlemann, and Olivier Frey. “Fabrication and Operation of Microfluidic Hanging Drop Networks.”https://doi.org/10.1007/978-1-4939-7792-5_15__Methods in Molecular Biology. Springer, 2018.https://doi.org/10.1007/978-1-4939-7792-5_15 .
LibreCat: https://research-explorer.ista.ac.at/record/305
DOI: 10.1007/978-1-4939-7792-5_15

Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar, Gasper Tkadik, and Peter Swain. “Distributed and Dynamic Intracellular Organization of Extracellular Information.”https://doi.org/10.1073/pnas.1716659115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1716659115 .
LibreCat: https://research-explorer.ista.ac.at/record/281
DOI: 10.1073/pnas.1716659115
WoS: 000434114900071
PMID: 29784812

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Evolutionary Pathways for the Generation of New Self-Incompatibility Haplotypes in a Non-Self Recognition System.”https://doi.org/10.1534/genetics.118.300748__Genetics. Genetics Society of America, 2018.https://doi.org/10.1534/genetics.118.300748 .
LibreCat: https://research-explorer.ista.ac.at/record/316
DOI: 10.1534/genetics.118.300748
WoS: 000437171700017

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Supplemental Material for Bodova et Al., 2018.”https://doi.org/10.25386/genetics.6148304.v1__Genetics Society of America, 2018.https://doi.org/10.25386/genetics.6148304.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9813
DOI: 10.25386/genetics.6148304.v1

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Probabilistic Models of Individual and Collective Animal Behavior.”https://doi.org/10.1371/journal.pone.0193049__PLoS One. Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049 .
LibreCat: https://research-explorer.ista.ac.at/record/406
DOI: 10.1371/journal.pone.0193049
WoS: 000426896800032

Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.”https://doi.org/10.1038/s41559-017-0424-z__Nature Ecology and Evolution. Springer Nature, 2018.https://doi.org/10.1038/s41559-017-0424-z .
LibreCat: https://research-explorer.ista.ac.at/record/457
DOI: 10.1038/s41559-017-0424-z
WoS: 000426516400027

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Implementation of the Inference Method in Matlab.”https://doi.org/10.1371/journal.pone.0193049.s001__Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9831
DOI: 10.1371/journal.pone.0193049.s001

Ferrari, Ulisse, Stephane Deny, Matthew J Chalk, Gasper Tkadik, Olivier Marre, and Thierry Mora. “Separating Intrinsic Interactions from Extrinsic Correlations in a Network of Sensory Neurons.”https://doi.org/10.1103/PhysRevE.98.042410__Physical Review E. American Physical Society, 2018.https://doi.org/10.1103/PhysRevE.98.042410 .
LibreCat: https://research-explorer.ista.ac.at/record/31
DOI: 10.1103/PhysRevE.98.042410
WoS: 000447486100004

Chalk, Matthew J, Olivier Marre, and Gasper Tkadik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.”https://doi.org/10.1073/pnas.1711114115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1711114115 .
LibreCat: https://research-explorer.ista.ac.at/record/543
DOI: 10.1073/pnas.1711114115
WoS: 000419128700049

Bodova, Katarina, Jan Haskovec, and Peter Markowich. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.”https://doi.org/10.1016/j.physd.2017.10.015__Physica D: Nonlinear Phenomena. Elsevier, 2018.https://doi.org/10.1016/j.physd.2017.10.015 .
LibreCat: https://research-explorer.ista.ac.at/record/607
DOI: 10.1016/j.physd.2017.10.015
WoS: 000437962900012
arXiv: 1704.08757

Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.”https://doi.org/10.1093/molbev/msy163__Molecular Biology and Evolution. Oxford University Press, 2018.https://doi.org/10.1093/molbev/msy163 .
LibreCat: https://research-explorer.ista.ac.at/record/19
DOI: 10.1093/molbev/msy163
WoS: 000452567200006
PMID: 30169679

Botella Soler, Vicente, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkadik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.”https://doi.org/10.1371/journal.pcbi.1006057__PLoS Computational Biology. Public Library of Science, 2018.https://doi.org/10.1371/journal.pcbi.1006057 .
LibreCat: https://research-explorer.ista.ac.at/record/292
DOI: 10.1371/journal.pcbi.1006057
WoS: 000434012100002

Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gasper Tkadik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.”https://doi.org/10.15479/AT:ISTA:98__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:98 .
LibreCat: https://research-explorer.ista.ac.at/record/5584
DOI: 10.15479/AT:ISTA:98

De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkadik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.”https://doi.org/10.1038/s41467-018-05417-9__Nature Communications. Springer Nature, 2018.https://doi.org/10.1038/s41467-018-05417-9 .
LibreCat: https://research-explorer.ista.ac.at/record/161
DOI: 10.1038/s41467-018-05417-9
WoS: 000440149300021

De Martino, Daniele, and Gasper Tkadik. “Supporting Materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.’”https://doi.org/10.15479/AT:ISTA:62__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:62 .
LibreCat: https://research-explorer.ista.ac.at/record/5587
DOI: 10.15479/AT:ISTA:62

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.1038/s41559-018-0651-y__Nature Ecology and Evolution. Nature Publishing Group, 2018.https://doi.org/10.1038/s41559-018-0651-y .
LibreCat: https://research-explorer.ista.ac.at/record/67
DOI: 10.1038/s41559-018-0651-y
WoS: 000447947600021

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.15479/AT:ISTA:108__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:108 .
LibreCat: https://research-explorer.ista.ac.at/record/5585
DOI: 10.15479/AT:ISTA:108

Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkadik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.”https://doi.org/10.1038/s41467-017-01683-1__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-01683-1 .
LibreCat: https://research-explorer.ista.ac.at/record/613
DOI: 10.1038/s41467-017-01683-1

Der, Ralf, and Georg S Martius. “Dynamical Self Consistency Leads to Behavioral Development and Emergent Social Interactions in Robots.”https://doi.org/10.1109/DEVLRN.2016.7846789__IEEE, 2017.https://doi.org/10.1109/DEVLRN.2016.7846789 .
LibreCat: https://research-explorer.ista.ac.at/record/652
DOI: 10.1109/DEVLRN.2016.7846789

Der, Ralf, and Georg S Martius. “Self Organized Behavior Generation for Musculoskeletal Robots.”https://doi.org/10.3389/fnbot.2017.00008__Frontiers in Neurorobotics. Frontiers Research Foundation, 2017.https://doi.org/10.3389/fnbot.2017.00008 .
LibreCat: https://research-explorer.ista.ac.at/record/658
DOI: 10.3389/fnbot.2017.00008

Humplik, Jan, and Gasper Tkadik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.”https://doi.org/10.1371/journal.pcbi.1005763__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005763 .
LibreCat: https://research-explorer.ista.ac.at/record/720
DOI: 10.1371/journal.pcbi.1005763

Harpaz, Roy, Gasper Tkadik, and Elad Schneidman. “Discrete Modes of Social Information Processing Predict Individual Behavior of Fish in a Group.”https://doi.org/10.1073/pnas.1703817114__PNAS. National Academy of Sciences, 2017.https://doi.org/10.1073/pnas.1703817114 .
LibreCat: https://research-explorer.ista.ac.at/record/725
DOI: 10.1073/pnas.1703817114
PMID: 28874581

Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gasper Tkadik, and Michael Berry. “Data from: Error-Robust Modes of the Retinal Population Code.”https://doi.org/10.5061/dryad.1f1rc__Dryad, 2017.https://doi.org/10.5061/dryad.1f1rc .
LibreCat: https://research-explorer.ista.ac.at/record/9709
DOI: 10.5061/dryad.1f1rc

Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Sensory Noise Predicts Divisive Reshaping of Receptive Fields.”https://doi.org/10.1371/journal.pcbi.1005582__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005582 .
LibreCat: https://research-explorer.ista.ac.at/record/680
DOI: 10.1371/journal.pcbi.1005582

Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Supplementary Appendix.”https://doi.org/10.1371/journal.pcbi.1005582.s001__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005582.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9855
DOI: 10.1371/journal.pcbi.1005582.s001

Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Noisy Response to Antibiotic Stress Predicts Subsequent Single Cell Survival in an Acidic Environment.”https://doi.org/10.1016/j.cels.2017.03.001__Cell Systems. Cell Press, 2017.https://doi.org/10.1016/j.cels.2017.03.001 .
LibreCat: https://research-explorer.ista.ac.at/record/666
DOI: 10.1016/j.cels.2017.03.001

Martin Del Campo Sanchez, Abraham, Sarah A Cepeda Humerez, and Caroline Uhler. “Exact Goodness-of-Fit Testing for the Ising Model.”https://doi.org/10.1111/sjos.12251__Scandinavian Journal of Statistics. Wiley-Blackwell, 2017.https://doi.org/10.1111/sjos.12251 .
LibreCat: https://research-explorer.ista.ac.at/record/2016
DOI: 10.1111/sjos.12251
WoS: 000400985000001
arXiv: 1410.1242

Deny, Stephane, Ulisse Ferrari, Emilie Mace, Pierre Yger, Romain Caplette, Serge Picaud, Gasper Tkadik, and Olivier Marre. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.”https://doi.org/10.1038/s41467-017-02159-y__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-02159-y .
LibreCat: https://research-explorer.ista.ac.at/record/1104
DOI: 10.1038/s41467-017-02159-y
WoS: 000417241200004

Levina (Martius), Anna, and Viola Priesemann. “Subsampling Scaling.”https://doi.org/10.1038/ncomms15140__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/ncomms15140 .
LibreCat: https://research-explorer.ista.ac.at/record/993
DOI: 10.1038/ncomms15140
WoS: 000400560700001

Friedlander, Tamar, Roshan Prizak, Nicholas H Barton, and Gasper Tkadik. “Evolution of New Regulatory Functions on Biophysically Realistic Fitness Landscapes.”https://doi.org/10.1038/s41467-017-00238-8__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-00238-8 .
LibreCat: https://research-explorer.ista.ac.at/record/955
DOI: 10.1038/s41467-017-00238-8
WoS: 000407198800005

De Martino, Daniele. “Scales and Multimodal Flux Distributions in Stationary Metabolic Network Models via Thermodynamics.”https://doi.org/10.1103/PhysRevE.95.062419__https://doi.org/10.1103/PhysRevE.95.062419__Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics, 2017.https://doi.org/10.1103/PhysRevE.95.062419 .
LibreCat: https://research-explorer.ista.ac.at/record/959
DOI: 10.1103/PhysRevE.95.062419
WoS: 000404546400004

De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Quantifying the Entropic Cost of Cellular Growth Control.”https://doi.org/10.1103/PhysRevE.96.010401__https://doi.org/10.1103/PhysRevE.96.010401__Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics, 2017.https://doi.org/10.1103/PhysRevE.96.010401 .
LibreCat: https://research-explorer.ista.ac.at/record/947
DOI: 10.1103/PhysRevE.96.010401
WoS: 000405194200002

Zagórski, Marcin P, Yoji Tabata, Nathalie Brandenberg, Matthias Lutolf, Gasper Tkadik, Tobias Bollenbach, James Briscoe, and Anna Kicheva. “Decoding of Position in the Developing Neural Tube from Antiparallel Morphogen Gradients.”https://doi.org/10.1126/science.aam5887__Science. American Association for the Advancement of Science, 2017.https://doi.org/10.1126/science.aam5887 .
LibreCat: https://research-explorer.ista.ac.at/record/943
DOI: 10.1126/science.aam5887
WoS: 000404351500036
PMID: 28663499

Colabrese, Simona, Daniele De Martino, Luca Leuzzi, and Enzo Marinari. “Phase Transitions in Integer Linear Problems.”https://doi.org/10.1088/1742-5468/aa85c3__https://doi.org/10.1088/1742-5468/aa85c3__Journal of Statistical Mechanics: Theory and Experiment. IOPscience, 2017.https://doi.org/10.1088/1742-5468/aa85c3 .
LibreCat: https://research-explorer.ista.ac.at/record/823
DOI: 10.1088/1742-5468/aa85c3
WoS: 000411842900001

Savin, Cristina, and Gasper Tkadik. “Maximum Entropy Models as a Tool for Building Precise Neural Controls.”https://doi.org/10.1016/j.conb.2017.08.001__Current Opinion in Neurobiology. Elsevier, 2017.https://doi.org/10.1016/j.conb.2017.08.001 .
LibreCat: https://research-explorer.ista.ac.at/record/730
DOI: 10.1016/j.conb.2017.08.001
WoS: 000416196400016

De Martino, Daniele. “Maximum Entropy Modeling of Metabolic Networks by Constraining Growth-Rate Moments Predicts Coexistence of Phenotypes.”https://doi.org/10.1103/PhysRevE.96.060401__Physical Review E. American Physical Society, 2017.https://doi.org/10.1103/PhysRevE.96.060401 .
LibreCat: https://research-explorer.ista.ac.at/record/548
DOI: 10.1103/PhysRevE.96.060401

Lang, Moritz, and Eduardo Sontag. “Zeros of Nonlinear Systems with Input Invariances.”https://doi.org/10.1016/j.automatica.2017.03.030__Automatica. International Federation of Automatic Control, 2017.https://doi.org/10.1016/j.automatica.2017.03.030 .
LibreCat: https://research-explorer.ista.ac.at/record/1007
DOI: 10.1016/j.automatica.2017.03.030
WoS: 000403513900006

Marre, Olivier, Gasper Tkadik, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. “Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells.”https://doi.org/10.15479/AT:ISTA:61__Institute of Science and Technology Austria, 2017.https://doi.org/10.15479/AT:ISTA:61 .
LibreCat: https://research-explorer.ista.ac.at/record/5562
DOI: 10.15479/AT:ISTA:61

Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkadik, and Calin C Guet. “Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity.”https://doi.org/10.15479/AT:ISTA:53__Institute of Science and Technology Austria, 2017.https://doi.org/10.15479/AT:ISTA:53 .
LibreCat: https://research-explorer.ista.ac.at/record/5560
DOI: 10.15479/AT:ISTA:53

Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkadik, and Calin C Guet. “Biased Partitioning of the Multidrug Efflux Pump AcrAB TolC Underlies Long Lived Phenotypic Heterogeneity.”https://doi.org/10.1126/science.aaf4762__Science. American Association for the Advancement of Science, 2017.https://doi.org/10.1126/science.aaf4762 .
LibreCat: https://research-explorer.ista.ac.at/record/665
DOI: 10.1126/science.aaf4762

Barone, Vanessa, Moritz Lang, Gabriel Krens, Saurabh Pradhan, Shayan Shamipour, Keisuke Sako, Mateusz K Sikora, Calin C Guet, and Carl-Philipp J Heisenberg. “An Effective Feedback Loop between Cell-Cell Contact Duration and Morphogen Signaling Determines Cell Fate.”https://doi.org/10.1016/j.devcel.2017.09.014__Developmental Cell. Cell Press, 2017.https://doi.org/10.1016/j.devcel.2017.09.014 .
LibreCat: https://research-explorer.ista.ac.at/record/735
DOI: 10.1016/j.devcel.2017.09.014
WoS: 000413443700011

Chalk, Matthew J, Olivier Marre, and Gasper Tkadik. “Relevant Sparse Codes with Variational Information Bottleneck,” 29:1965–73. Neural Information Processing Systems, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/1082

Savin, Cristina, and Gasper Tkadik. “Estimating Nonlinear Neural Response Functions Using GP Priors and Kronecker Methods,” 29:3610–18. Neural Information Processing Systems, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/1105

Lang, Moritz, and Jörg Stelling. “Modular Parameter Identification of Biomolecular Networks.”https://doi.org/10.1137/15M103306X__SIAM Journal on Scientific Computing. Society for Industrial and Applied Mathematics , 2016.https://doi.org/10.1137/15M103306X .
LibreCat: https://research-explorer.ista.ac.at/record/1170
DOI: 10.1137/15M103306X

Tkadik, Gasper. “Understanding Regulatory Networks Requires More than Computing a Multitude of Graph Statistics: Comment on &;quot;Drivers of Structural Features in Gene Regulatory Networks: From Biophysical Constraints to Biological Function&;quot; by O. C. Martin et Al.”https://doi.org/10.1016/j.plrev.2016.06.005__Physics of Life Reviews. Elsevier, 2016.https://doi.org/10.1016/j.plrev.2016.06.005 .
LibreCat: https://research-explorer.ista.ac.at/record/1171
DOI: 10.1016/j.plrev.2016.06.005

De Martino, Daniele, and Davide Masoero. “Asymptotic Analysis of Noisy Fitness Maximization, Applied to Metabolism &;amp; Growth.”https://doi.org/10.1088/1742-5468/aa4e8f__https://doi.org/10.1088/1742-5468/aa4e8f__Journal of Statistical Mechanics: Theory and Experiment. IOPscience, 2016.https://doi.org/10.1088/1742-5468/aa4e8f .
LibreCat: https://research-explorer.ista.ac.at/record/1188
DOI: 10.1088/1742-5468/aa4e8f

Hu, Fang, Lavanya Rishishwar, Ambily Sivadas, Gabriel Mitchell, Jordan King, Timothy Murphy, Janet Gilsdorf, Leonard Mayer, and Xin Wang. “Comparative Genomic Analysis of Haemophilus Haemolyticus and Nontypeable Haemophilus Influenzae and a New Testing Scheme for Their Discrimination.”https://doi.org/10.1128/JCM.01511-16__Journal of Clinical Microbiology. American Society for Microbiology, 2016.https://doi.org/10.1128/JCM.01511-16 .
LibreCat: https://research-explorer.ista.ac.at/record/1203
DOI: 10.1128/JCM.01511-16

Martius, Georg S, Raphael Hostettler, Alois Knoll, and Ralf Der. “Compliant Control for Soft Robots: Emergent Behavior of a Tendon Driven Anthropomorphic Arm,”https://doi.org/10.1109/IROS.2016.7759138__Vol. 2016–November. IEEE, 2016.https://doi.org/10.1109/IROS.2016.7759138 .
LibreCat: https://research-explorer.ista.ac.at/record/1214
DOI: 10.1109/IROS.2016.7759138

Miki, Gregor, Alex Stoll, Joe Bevirt, Rok Grah, and Mark Moore. “Fuselage Boundary Layer Ingestion Propulsion Applied to a Thin Haul Commuter Aircraft for Optimal Efficiency,”https://doi.org/10.2514/6.2016-3764__1–19. AIAA, 2016.https://doi.org/10.2514/6.2016-3764 .
LibreCat: https://research-explorer.ista.ac.at/record/1220
DOI: 10.2514/6.2016-3764

Sokolowski, Thomas R, Aleksandra Walczak, William Bialek, and Gasper Tkadik. “Extending the Dynamic Range of Transcription Factor Action by Translational Regulation.”https://doi.org/10.1103/PhysRevE.93.022404__Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics, 2016.https://doi.org/10.1103/PhysRevE.93.022404 .
LibreCat: https://research-explorer.ista.ac.at/record/1242
DOI: 10.1103/PhysRevE.93.022404

Recouvreux, Pierre, Thomas R Sokolowski, Aristea Grammoustianou, Pieter Tenwolde, and Marileen Dogterom. “Chimera Proteins with Affinity for Membranes and Microtubule Tips Polarize in the Membrane of Fission Yeast Cells.”https://doi.org/10.1073/pnas.1419248113__PNAS. National Academy of Sciences, 2016.https://doi.org/10.1073/pnas.1419248113 .
LibreCat: https://research-explorer.ista.ac.at/record/1244
DOI: 10.1073/pnas.1419248113

Tkadik, Gasper, and William Bialek. “Information Processing in Living Systems.”https://doi.org/10.1146/annurev-conmatphys-031214-014803__Annual Review of Condensed Matter Physics. Annual Reviews, 2016.https://doi.org/10.1146/annurev-conmatphys-031214-014803 .
LibreCat: https://research-explorer.ista.ac.at/record/1248
DOI: 10.1146/annurev-conmatphys-031214-014803

De Martino, Daniele. “The Dual of the Space of Interactions in Neural Network Models.”https://doi.org/10.1142/S0129183116500674__International Journal of Modern Physics C. World Scientific Publishing, 2016.https://doi.org/10.1142/S0129183116500674 .
LibreCat: https://research-explorer.ista.ac.at/record/1260
DOI: 10.1142/S0129183116500674
arXiv: 1505.02963

Chalk, Matthew J, Boris Gutkin, and Sophie Denève. “Neural Oscillations as a Signature of Efficient Coding in the Presence of Synaptic Delays.”https://doi.org/10.7554/eLife.13824__ELife. eLife Sciences Publications, 2016.https://doi.org/10.7554/eLife.13824 .
LibreCat: https://research-explorer.ista.ac.at/record/1266
DOI: 10.7554/eLife.13824

Stone, Laura, Michael Baym, Tami Lieberman, Remy P Chait, Jon Clardy, and Roy Kishony. “Compounds That Select against the Tetracycline-Resistance Efflux Pump.”https://doi.org/10.1038/nchembio.2176__Nature Chemical Biology. Nature Publishing Group, 2016.https://doi.org/10.1038/nchembio.2176 .
LibreCat: https://research-explorer.ista.ac.at/record/1290
DOI: 10.1038/nchembio.2176

Lang, Moritz, and Eduardo Sontag. “Scale-Invariant Systems Realize Nonlinear Differential Operators,”https://doi.org/10.1109/ACC.2016.7526722__Vol. 2016–July. IEEE, 2016.https://doi.org/10.1109/ACC.2016.7526722 .
LibreCat: https://research-explorer.ista.ac.at/record/1320
DOI: 10.1109/ACC.2016.7526722

Chait, Remy P, Adam Palmer, Idan Yelin, and Roy Kishony. “Pervasive Selection for and against Antibiotic Resistance in Inhomogeneous Multistress Environments.”https://doi.org/10.1038/ncomms10333__Nature Communications. Nature Publishing Group, 2016.https://doi.org/10.1038/ncomms10333 .
LibreCat: https://research-explorer.ista.ac.at/record/1332
DOI: 10.1038/ncomms10333

Baym, Michael, Tami Lieberman, Eric Kelsic, Remy P Chait, Rotem Gross, Idan Yelin, and Roy Kishony. “Spatiotemporal Microbial Evolution on Antibiotic Landscapes.”https://doi.org/10.1126/science.aag0822__Science. American Association for the Advancement of Science, 2016.https://doi.org/10.1126/science.aag0822 .
LibreCat: https://research-explorer.ista.ac.at/record/1342
DOI: 10.1126/science.aag0822

De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Growth against Entropy in Bacterial Metabolism: The Phenotypic Trade-off behind Empirical Growth Rate Distributions in E. Coli.”https://doi.org/10.1088/1478-3975/13/3/036005__Physical Biology. IOP Publishing Ltd., 2016.https://doi.org/10.1088/1478-3975/13/3/036005 .
LibreCat: https://research-explorer.ista.ac.at/record/1394
DOI: 10.1088/1478-3975/13/3/036005

Bodova, Katarina, Gasper Tkadik, and Nicholas H Barton. “A General Approximation for the Dynamics of Quantitative Traits.”https://doi.org/10.1534/genetics.115.184127__Genetics. Genetics Society of America, 2016.https://doi.org/10.1534/genetics.115.184127 .
LibreCat: https://research-explorer.ista.ac.at/record/1420
DOI: 10.1534/genetics.115.184127
arXiv: 1510.08344

De Martino, Daniele. “Genome-Scale Estimate of the Metabolic Turnover of E. Coli from the Energy Balance Analysis.”https://doi.org/10.1088/1478-3975/13/1/016003__Physical Biology. IOP Publishing Ltd., 2016.https://doi.org/10.1088/1478-3975/13/1/016003 .
LibreCat: https://research-explorer.ista.ac.at/record/1485
DOI: 10.1088/1478-3975/13/1/016003

Schilling, Christian, Sergiy Bogomolov, Thomas A Henzinger, Andreas Podelski, and Jakob Ruess. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.”https://doi.org/10.1016/j.biosystems.2016.07.005__Biosystems. Elsevier, 2016.https://doi.org/10.1016/j.biosystems.2016.07.005 .
LibreCat: https://research-explorer.ista.ac.at/record/1148
DOI: 10.1016/j.biosystems.2016.07.005

Martius, Georg S, Rafael Hostettler, Alois Knoll, and Ralf Der. “Self-Organized Control of an Tendon Driven Arm by Differential Extrinsic Plasticity.”https://doi.org/10.7551/978-0-262-33936-0-ch029__In Proceedings of the Artificial Life Conference 2016, 28:142–43. MIT Press, 2016.https://doi.org/10.7551/978-0-262-33936-0-ch029 .
LibreCat: https://research-explorer.ista.ac.at/record/8094
DOI: 10.7551/978-0-262-33936-0-ch029

Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gasper Tkadik, and Michael Berry. “Error-Robust Modes of the Retinal Population Code.”https://doi.org/10.1371/journal.pcbi.1005148__PLoS Computational Biology. Public Library of Science, 2016.https://doi.org/10.1371/journal.pcbi.1005148 .
LibreCat: https://research-explorer.ista.ac.at/record/1197
DOI: 10.1371/journal.pcbi.1005148

Monk, Travis, Cristina Savin, and Jörg Lücke. “Neurons Equipped with Intrinsic Plasticity Learn Stimulus Intensity Statistics,” 29:4285–93. Neural Information Processing Systems, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/948

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information.”https://doi.org/10.1371/journal.pone.0163628__PLoS One. Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628 .
LibreCat: https://research-explorer.ista.ac.at/record/1270
DOI: 10.1371/journal.pone.0163628

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Computation of Positional Information in an Ising Model.”https://doi.org/10.1371/journal.pone.0163628.s002__Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628.s002 .
LibreCat: https://research-explorer.ista.ac.at/record/9870
DOI: 10.1371/journal.pone.0163628.s002

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Error Bound on an Estimator of Position.”https://doi.org/10.1371/journal.pone.0163628.s001__Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9869
DOI: 10.1371/journal.pone.0163628.s001

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Computation of Positional Information in a Discrete Morphogen Field.”https://doi.org/10.1371/journal.pone.0163628.s003__Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628.s003 .
LibreCat: https://research-explorer.ista.ac.at/record/9871
DOI: 10.1371/journal.pone.0163628.s003

Rieckh, Georg. “Studying the Complexities of Transcriptional Regulation.” Institute of Science and Technology Austria, 2016.
LibreCat: https://research-explorer.ista.ac.at/record/1128

Friedlander, Tamar, Roshan Prizak, Calin C Guet, Nicholas H Barton, and Gasper Tkadik. “Intrinsic Limits to Gene Regulation by Global Crosstalk.”https://doi.org/10.1038/ncomms12307__Nature Communications. Nature Publishing Group, 2016.https://doi.org/10.1038/ncomms12307 .
LibreCat: https://research-explorer.ista.ac.at/record/1358
DOI: 10.1038/ncomms12307

Parise, Francesca, John Lygeros, and Jakob Ruess. “Bayesian Inference for Stochastic Individual-Based Models of Ecological Systems: A Pest Control Simulation Study.”https://doi.org/10.3389/fenvs.2015.00042__Frontiers in Environmental Science. Frontiers, 2015.https://doi.org/10.3389/fenvs.2015.00042 .
LibreCat: https://research-explorer.ista.ac.at/record/10794
DOI: 10.3389/fenvs.2015.00042

Ruess, Jakob. “Minimal Moment Equations for Stochastic Models of Biochemical Reaction Networks with Partially Finite State Space.”https://doi.org/10.1063/1.4937937__Journal of Chemical Physics. American Institute of Physics, 2015.https://doi.org/10.1063/1.4937937 .
LibreCat: https://research-explorer.ista.ac.at/record/1539
DOI: 10.1063/1.4937937

Ruess, Jakob, Francesca Parise, Andreas Milias Argeitis, Mustafa Khammash, and John Lygeros. “Iterative Experiment Design Guides the Characterization of a Light-Inducible Gene Expression Circuit.”https://doi.org/10.1073/pnas.1423947112__PNAS. National Academy of Sciences, 2015.https://doi.org/10.1073/pnas.1423947112 .
LibreCat: https://research-explorer.ista.ac.at/record/1538
DOI: 10.1073/pnas.1423947112
PMID: 26085136

Gilson, Matthieu, Cristina Savin, and Friedemann Zenke. “Editorial: Emergent Neural Computation from the Interaction of Different Forms of Plasticity.”https://doi.org/10.3389/fncom.2015.00145__Frontiers in Computational Neuroscience. Frontiers Research Foundation, 2015.https://doi.org/10.3389/fncom.2015.00145 .
LibreCat: https://research-explorer.ista.ac.at/record/1564
DOI: 10.3389/fncom.2015.00145

Der, Ralf, and Georg S Martius. “Novel Plasticity Rule Can Explain the Development of Sensorimotor Intelligence.”https://doi.org/10.1073/pnas.1508400112__PNAS. National Academy of Sciences, 2015.https://doi.org/10.1073/pnas.1508400112 .
LibreCat: https://research-explorer.ista.ac.at/record/1570
DOI: 10.1073/pnas.1508400112
PMID: 26504200

Bogomolov, Sergiy, Thomas A Henzinger, Andreas Podelski, Jakob Ruess, and Christian Schilling. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.”https://doi.org/10.1007/978-3-319-23401-4_8__Lecture Notes in Computer Science. Springer, 2015.https://doi.org/10.1007/978-3-319-23401-4_8 .
LibreCat: https://research-explorer.ista.ac.at/record/1658
DOI: 10.1007/978-3-319-23401-4_8

Marre, Olivier, Vicente Botella Soler, Kristina Simmons, Thierry Mora, Gasper Tkadik, and Michael Berry. “High Accuracy Decoding of Dynamical Motion from a Large Retinal Population.”https://doi.org/10.1371/journal.pcbi.1004304__PLoS Computational Biology. Public Library of Science, 2015.https://doi.org/10.1371/journal.pcbi.1004304 .
LibreCat: https://research-explorer.ista.ac.at/record/1697
DOI: 10.1371/journal.pcbi.1004304

Tkadik, Gasper, Thierry Mora, Olivier Marre, Dario Amodei, Stephanie Palmer, Michael Berry Ii, and William Bialek. “Thermodynamics and Signatures of Criticality in a Network of Neurons.”https://doi.org/10.1073/pnas.1514188112__PNAS. National Academy of Sciences, 2015.https://doi.org/10.1073/pnas.1514188112 .
LibreCat: https://research-explorer.ista.ac.at/record/1701
DOI: 10.1073/pnas.1514188112
PMID: 26330611

Ruess, Jakob, and John Lygeros. “Moment-Based Methods for Parameter Inference and Experiment Design for Stochastic Biochemical Reaction Networks.”https://doi.org/10.1145/2688906__ACM Transactions on Modeling and Computer Simulation. ACM, 2015.https://doi.org/10.1145/2688906 .
LibreCat: https://research-explorer.ista.ac.at/record/1861
DOI: 10.1145/2688906

Tkadik, Gasper, Julien Dubuis, Mariela Petkova, and Thomas Gregor. “Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework.”https://doi.org/10.1534/genetics.114.171850__Genetics. Genetics Society of America, 2015.https://doi.org/10.1534/genetics.114.171850 .
LibreCat: https://research-explorer.ista.ac.at/record/1885
DOI: 10.1534/genetics.114.171850

Sokolowski, Thomas R, and Gasper Tkadik. “Optimizing Information Flow in Small Genetic Networks. IV. Spatial Coupling.”https://doi.org/10.1103/PhysRevE.91.062710__Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics, 2015.https://doi.org/10.1103/PhysRevE.91.062710 .
LibreCat: https://research-explorer.ista.ac.at/record/1940
DOI: 10.1103/PhysRevE.91.062710

Friedlander, Tamar, Avraham E. Mayo, Tsvi Tlusty, and Uri Alon. “Supporting Information Text.”https://doi.org/10.1371/journal.pcbi.1004055.s001__Public Library of Science, 2015.https://doi.org/10.1371/journal.pcbi.1004055.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9718
DOI: 10.1371/journal.pcbi.1004055.s001

Friedlander, Tamar, Avraham Mayo, Tsvi Tlusty, and Uri Alon. “Evolution of Bow-Tie Architectures in Biology.”https://doi.org/10.1371/journal.pcbi.1004055__PLoS Computational Biology. Public Library of Science, 2015.https://doi.org/10.1371/journal.pcbi.1004055 .
LibreCat: https://research-explorer.ista.ac.at/record/1827
DOI: 10.1371/journal.pcbi.1004055

Friedlander, Tamar, Avraham E. Mayo, Tsvi Tlusty, and Uri Alon. “Evolutionary Simulation Code.”https://doi.org/10.1371/journal.pcbi.1004055.s002__Public Library of Science, 2015.https://doi.org/10.1371/journal.pcbi.1004055.s002 .
LibreCat: https://research-explorer.ista.ac.at/record/9773
DOI: 10.1371/journal.pcbi.1004055.s002

Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gasper Tkadik. “Other Fitness Models for Comparison &; for Interacting TFBSs.”https://doi.org/10.1371/journal.pgen.1005639.s001__Public Library of Science, 2015.https://doi.org/10.1371/journal.pgen.1005639.s001 .
LibreCat: https://research-explorer.ista.ac.at/record/9712
DOI: 10.1371/journal.pgen.1005639.s001

Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gasper Tkadik. “Dynamics of Transcription Factor Binding Site Evolution.”https://doi.org/10.1371/journal.pgen.1005639__PLoS Genetics. Public Library of Science, 2015.https://doi.org/10.1371/journal.pgen.1005639 .
LibreCat: https://research-explorer.ista.ac.at/record/1666
DOI: 10.1371/journal.pgen.1005639

Cepeda Humerez, Sarah A, Georg Rieckh, and Gasper Tkadik. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.”https://doi.org/10.1103/PhysRevLett.115.248101__Physical Review Letters. American Physical Society, 2015.https://doi.org/10.1103/PhysRevLett.115.248101 .
LibreCat: https://research-explorer.ista.ac.at/record/1576
DOI: 10.1103/PhysRevLett.115.248101

Martius, Georg S, and Eckehard Olbrich. “Quantifying Emergent Behavior of Autonomous Robots.”https://doi.org/10.3390/e17107266__Entropy. MDPI, 2015.https://doi.org/10.3390/e17107266 .
LibreCat: https://research-explorer.ista.ac.at/record/1655
DOI: 10.3390/e17107266

Savin, Cristina, and Sophie Denève. “Spatio-Temporal Representations of Uncertainty in Spiking Neural Networks,” 3:2024–32. Neural Information Processing Systems, 2014.
LibreCat: https://research-explorer.ista.ac.at/record/1708

Hermundstad, Ann, John Briguglio, Mary Conte, Jonathan Victor, Vijay Balasubramanian, and Gasper Tkadik. “Variance Predicts Salience in Central Sensory Processing.”https://doi.org/10.7554/eLife.03722__ELife. eLife Sciences Publications, 2014.https://doi.org/10.7554/eLife.03722 .
LibreCat: https://research-explorer.ista.ac.at/record/1886
DOI: 10.7554/eLife.03722

Kollár, Richard, Katarina Bodova, Jozef Nosek, and dubomír Tomáska. “Mathematical Model of Alternative Mechanism of Telomere Length Maintenance.”https://doi.org/10.1103/PhysRevE.89.032701__Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics, 2014.https://doi.org/10.1103/PhysRevE.89.032701 .
LibreCat: https://research-explorer.ista.ac.at/record/1896
DOI: 10.1103/PhysRevE.89.032701

Ezard, Thomas, Roshan Prizak, and Rebecca Hoyle. “The Fitness Costs of Adaptation via Phenotypic Plasticity and Maternal Effects.”https://doi.org/10.1111/1365-2435.12207__Functional Ecology. Wiley-Blackwell, 2014.https://doi.org/10.1111/1365-2435.12207 .
LibreCat: https://research-explorer.ista.ac.at/record/1909
DOI: 10.1111/1365-2435.12207

Humplik, Jan, Alison Hill, and Martin Nowak. “Evolutionary Dynamics of Infectious Diseases in Finite Populations.”https://doi.org/10.1016/j.jtbi.2014.06.039__Journal of Theoretical Biology. Elsevier, 2014.https://doi.org/10.1016/j.jtbi.2014.06.039 .
LibreCat: https://research-explorer.ista.ac.at/record/1928
DOI: 10.1016/j.jtbi.2014.06.039

Savin, Cristina, and Jochen Triesch. “Emergence of Task-Dependent Representations in Working Memory Circuits.”https://doi.org/10.3389/fncom.2014.00057__Frontiers in Computational Neuroscience. Frontiers Research Foundation, 2014.https://doi.org/10.3389/fncom.2014.00057 .
LibreCat: https://research-explorer.ista.ac.at/record/1931
DOI: 10.3389/fncom.2014.00057

Bodova, Katarina, David Paydarfar, and Daniel Forger. “Characterizing Spiking in Noisy Type II Neurons.”https://doi.org/10.1016/j.jtbi.2014.09.041__https://doi.org/10.1016/j.jtbi.2014.09.041__Journal of Theoretical Biology. Academic Press, 2014.https://doi.org/10.1016/j.jtbi.2014.09.041 .
LibreCat: https://research-explorer.ista.ac.at/record/2028
DOI: 10.1016/j.jtbi.2014.09.041

Botella Soler, Vicente, and Paul Glendinning. “Hierarchy and Polysynchrony in an Adaptive Network .”https://doi.org/10.1103/PhysRevE.89.062809__Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics, 2014.https://doi.org/10.1103/PhysRevE.89.062809 .
LibreCat: https://research-explorer.ista.ac.at/record/2183
DOI: 10.1103/PhysRevE.89.062809

Rieckh, Georg, and Gasper Tkadik. “Noise and Information Transmission in Promoters with Multiple Internal States.”https://doi.org/10.1016/j.bpj.2014.01.014__Biophysical Journal. Biophysical Society, 2014.https://doi.org/10.1016/j.bpj.2014.01.014 .
LibreCat: https://research-explorer.ista.ac.at/record/2231
DOI: 10.1016/j.bpj.2014.01.014
PMID: 24606943

Tkadik, Gasper, Anandamohan Ghosh, Elad Schneidman, and Ronen Segev. “Adaptation to Changes in Higher-Order Stimulus Statistics in the Salamander Retina.”https://doi.org/10.1371/journal.pone.0085841__PLoS One. Public Library of Science, 2014.https://doi.org/10.1371/journal.pone.0085841 .
LibreCat: https://research-explorer.ista.ac.at/record/3263
DOI: 10.1371/journal.pone.0085841

Prizak, Roshan, Thomas Ezard, and Rebecca Hoyle. “Fitness Consequences of Maternal and Grandmaternal Effects.”https://doi.org/10.1002/ece3.1150__Ecology and Evolution. Wiley-Blackwell, 2014.https://doi.org/10.1002/ece3.1150 .
LibreCat: https://research-explorer.ista.ac.at/record/537
DOI: 10.1002/ece3.1150