Grah, Rok, and Tamar Friedlander. “The Relation between Crosstalk and Gene Regulation Form Revisited.”https://doi.org/10.1371/journal.pcbi.1007642__PLOS Computational Biology. Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642 .

Grah, Rok, and Tamar Friedlander. “Maximizing Crosstalk.”https://doi.org/10.1371/journal.pcbi.1007642.s002__Public Library of Science, 2020.https://doi.org/10.1371/journal.pcbi.1007642.s002 .

Kavcic, Bor. “Analysis Scripts and Research Data for the Paper ‘Mechanisms of Drug Interactions between Translation-Inhibiting Antibiotics.’”https://doi.org/10.15479/AT:ISTA:8097__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8097 .

Kavcic, Bor. “Analysis Scripts and Research Data for the Paper ‘Minimal Biophysical Model of Combined Antibiotic Action.’”https://doi.org/10.15479/AT:ISTA:8930__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8930 .

Grah, Rok. “Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation.”https://doi.org/10.15479/AT:ISTA:7383__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:7383 .

Kavcic, Bor. “Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology.”https://doi.org/10.15479/AT:ISTA:8657__Institute of Science and Technology Austria, 2020.https://doi.org/10.15479/AT:ISTA:8657 .

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “Mechanisms of Drug Interactions between Translation-Inhibiting Antibiotics.”https://doi.org/10.1038/s41467-020-17734-z__Nature Communications. Springer Nature, 2020.https://doi.org/10.1038/s41467-020-17734-z .

Kavcic, Bor, Gasper Tkadik, and Mark Tobias Bollenbach. “A Minimal Biophysical Model of Combined Antibiotic Action.”https://doi.org/10.1101/2020.04.18.047886__BioRxiv. Cold Spring Harbor Laboratory, 2020.https://doi.org/10.1101/2020.04.18.047886 .

Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gasper Tkadik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.”https://doi.org/10.1038/s41559-020-1132-7__Nature Ecology &; Evolution. Springer Nature, 2020.https://doi.org/10.1038/s41559-020-1132-7 .

Bialek, William, Thomas Gregor, and Gasper Tkadik. “Action at a Distance in Transcriptional Regulation.” ArXiv:1912.08579. ArXiv, n.d.

Petkova, Mariela D., Gasper Tkadik, William Bialek, Eric F. Wieschaus, and Thomas Gregor. “Optimal Decoding of Cellular Identities in a Genetic Network.”https://doi.org/10.1016/j.cell.2019.01.007__Cell. Cell Press, 2019.https://doi.org/10.1016/j.cell.2019.01.007 .

De Martino, Daniele. “Feedback-Induced Self-Oscillations in Large Interacting Systems Subjected to Phase Transitions.”https://doi.org/10.1088/1751-8121/aaf2dd__Journal of Physics A: Mathematical and Theoretical. IOP Publishing, 2019.https://doi.org/10.1088/1751-8121/aaf2dd .

Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Temporal Order and Precision of Complex Stress Responses in Individual Bacteria.”https://doi.org/10.15252/msb.20188470__Molecular Systems Biology. Embo Press, 2019.https://doi.org/10.15252/msb.20188470 .

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.”https://doi.org/10.1371/journal.pcbi.1007168__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168 .

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Supporting Text and Results.”https://doi.org/10.1371/journal.pcbi.1007168.s001__Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168.s001 .

Sokolowski, Thomas R, Joris Paijmans, Laurens Bossen, Thomas Miedema, Martijn Wehrens, Nils B. Becker, Kazunari Kaizu, Koichi Takahashi, Marileen Dogterom, and Pieter Rein ten Wolde. “EGFRD in All Dimensions.”https://doi.org/10.1063/1.5064867__The Journal of Chemical Physics. AIP Publishing, 2019.https://doi.org/10.1063/1.5064867 .

Cepeda Humerez, Sarah A, Jakob Ruess, and Gasper Tkadik. “Estimating Information in Time-Varying Signals.”https://doi.org/10.1371/journal.pcbi.1007290__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007290 .

Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.”https://doi.org/10.1073/pnas.1812015116__Proceedings of the National Academy of Sciences. National Academy of Sciences, 2019.https://doi.org/10.1073/pnas.1812015116 .

Kavcic, Bor, A. Sakashita, H. Noguchi, and P. Ziherl. “Limiting Shapes of Confined Lipid Vesicles.”https://doi.org/10.1039/c8sm01956h__Soft Matter. Royal Society of Chemistry, 2019.https://doi.org/10.1039/c8sm01956h .

Cepeda Humerez, Sarah A. “Estimating Information Flow in Single Cells.”https://doi.org/10.15479/AT:ISTA:6473__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/AT:ISTA:6473 .

Prizak, Roshan. “Coevolution of Transcription Factors and Their Binding Sites in Sequence Space.”https://doi.org/10.15479/at:ista:th6071__Institute of Science and Technology Austria, 2019.https://doi.org/10.15479/at:ista:th6071 .

Wang, Jilin W. J. L., Fabrizio Lombardi, Xiyun Zhang, Christelle Anaclet, and Plamen Ch. Ivanov. “Non-Equilibrium Critical Dynamics of Bursts in ;8 and ;4 Rhythms as Fundamental Characteristic of Sleep and Wake Micro-Architecture.”https://doi.org/10.1371/journal.pcbi.1007268__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007268 .

Carballo-Pacheco, Martín, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, and Thierry Mora. “Receptor Crosstalk Improves Concentration Sensing of Multiple Ligands.”https://doi.org/10.1103/PhysRevE.99.022423__Physical Review E. American Physical Society, 2019.https://doi.org/10.1103/PhysRevE.99.022423 .

Hledik, Michal, Thomas R Sokolowski, and Gasper Tkadik. “A Tight Upper Bound on Mutual Information.”https://doi.org/10.1109/ITW44776.2019.8989292__In IEEE Information Theory Workshop, ITW 2019. IEEE, 2019.https://doi.org/10.1109/ITW44776.2019.8989292 .

De Martino, Andrea, and Daniele De Martino. “An Introduction to the Maximum Entropy Approach and Its Application to Inference Problems in Biology.”https://doi.org/10.1016/j.heliyon.2018.e00596__Heliyon. Elsevier, 2018.https://doi.org/10.1016/j.heliyon.2018.e00596 .

Misun, Patrick, Axel Birchler, Moritz Lang, Andreas Hierlemann, and Olivier Frey. “Fabrication and Operation of Microfluidic Hanging Drop Networks.”https://doi.org/10.1007/978-1-4939-7792-5_15__Methods in Molecular Biology. Springer, 2018.https://doi.org/10.1007/978-1-4939-7792-5_15 .

Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar, Gasper Tkadik, and Peter Swain. “Distributed and Dynamic Intracellular Organization of Extracellular Information.”https://doi.org/10.1073/pnas.1716659115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1716659115 .

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Evolutionary Pathways for the Generation of New Self-Incompatibility Haplotypes in a Non-Self Recognition System.”https://doi.org/10.1534/genetics.118.300748__Genetics. Genetics Society of America, 2018.https://doi.org/10.1534/genetics.118.300748 .

Bodova, Katarina, Tadeas Priklopil, David Field, Nicholas H Barton, and Melinda Pickup. “Supplemental Material for Bodova et Al., 2018.”https://doi.org/10.25386/genetics.6148304.v1__Genetics Society of America, 2018.https://doi.org/10.25386/genetics.6148304.v1 .

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Probabilistic Models of Individual and Collective Animal Behavior.”https://doi.org/10.1371/journal.pone.0193049__PLoS One. Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049 .

Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet. “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with Innate Immunity.”https://doi.org/10.1038/s41559-017-0424-z__Nature Ecology and Evolution. Springer Nature, 2018.https://doi.org/10.1038/s41559-017-0424-z .

Bod’Ová, Katarína, Gabriel Mitchell, Roy Harpaz, Elad Schneidman, and Gasper Tkadik. “Implementation of the Inference Method in Matlab.”https://doi.org/10.1371/journal.pone.0193049.s001__Public Library of Science, 2018.https://doi.org/10.1371/journal.pone.0193049.s001 .

Ferrari, Ulisse, Stephane Deny, Matthew J Chalk, Gasper Tkadik, Olivier Marre, and Thierry Mora. “Separating Intrinsic Interactions from Extrinsic Correlations in a Network of Sensory Neurons.”https://doi.org/10.1103/PhysRevE.98.042410__Physical Review E. American Physical Society, 2018.https://doi.org/10.1103/PhysRevE.98.042410 .

Chalk, Matthew J, Olivier Marre, and Gasper Tkadik. “Toward a Unified Theory of Efficient, Predictive, and Sparse Coding.”https://doi.org/10.1073/pnas.1711114115__PNAS. National Academy of Sciences, 2018.https://doi.org/10.1073/pnas.1711114115 .

Bodova, Katarina, Jan Haskovec, and Peter Markowich. “Well Posedness and Maximum Entropy Approximation for the Dynamics of Quantitative Traits.”https://doi.org/10.1016/j.physd.2017.10.015__Physica D: Nonlinear Phenomena. Elsevier, 2018.https://doi.org/10.1016/j.physd.2017.10.015 .

Palmer, Adam, Remy P Chait, and Roy Kishony. “Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.”https://doi.org/10.1093/molbev/msy163__Molecular Biology and Evolution. Oxford University Press, 2018.https://doi.org/10.1093/molbev/msy163 .

Botella Soler, Vicente, Stephane Deny, Georg S Martius, Olivier Marre, and Gasper Tkadik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.”https://doi.org/10.1371/journal.pcbi.1006057__PLoS Computational Biology. Public Library of Science, 2018.https://doi.org/10.1371/journal.pcbi.1006057 .

Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gasper Tkadik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.”https://doi.org/10.15479/AT:ISTA:98__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:98 .

De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gasper Tkadik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.”https://doi.org/10.1038/s41467-018-05417-9__Nature Communications. Springer Nature, 2018.https://doi.org/10.1038/s41467-018-05417-9 .

De Martino, Daniele, and Gasper Tkadik. “Supporting Materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.’”https://doi.org/10.15479/AT:ISTA:62__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:62 .

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.1038/s41559-018-0651-y__Nature Ecology and Evolution. Nature Publishing Group, 2018.https://doi.org/10.1038/s41559-018-0651-y .

Igler, Claudia, Mato Lagator, Gasper Tkadik, Jonathan P Bollback, and Calin C Guet. “Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”https://doi.org/10.15479/AT:ISTA:108__Institute of Science and Technology Austria, 2018.https://doi.org/10.15479/AT:ISTA:108 .

Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkadik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.”https://doi.org/10.1038/s41467-017-01683-1__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-01683-1 .

Der, Ralf, and Georg S Martius. “Dynamical Self Consistency Leads to Behavioral Development and Emergent Social Interactions in Robots.”https://doi.org/10.1109/DEVLRN.2016.7846789__IEEE, 2017.https://doi.org/10.1109/DEVLRN.2016.7846789 .

Der, Ralf, and Georg S Martius. “Self Organized Behavior Generation for Musculoskeletal Robots.”https://doi.org/10.3389/fnbot.2017.00008__Frontiers in Neurorobotics. Frontiers Research Foundation, 2017.https://doi.org/10.3389/fnbot.2017.00008 .

Humplik, Jan, and Gasper Tkadik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.”https://doi.org/10.1371/journal.pcbi.1005763__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005763 .

Harpaz, Roy, Gasper Tkadik, and Elad Schneidman. “Discrete Modes of Social Information Processing Predict Individual Behavior of Fish in a Group.”https://doi.org/10.1073/pnas.1703817114__PNAS. National Academy of Sciences, 2017.https://doi.org/10.1073/pnas.1703817114 .

Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gasper Tkadik, and Michael Berry. “Data from: Error-Robust Modes of the Retinal Population Code.”https://doi.org/10.5061/dryad.1f1rc__Dryad, 2017.https://doi.org/10.5061/dryad.1f1rc .

Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Sensory Noise Predicts Divisive Reshaping of Receptive Fields.”https://doi.org/10.1371/journal.pcbi.1005582__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005582 .

Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Supplementary Appendix.”https://doi.org/10.1371/journal.pcbi.1005582.s001__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005582.s001 .

Mitosch, Karin, Georg Rieckh, and Mark Tobias Bollenbach. “Noisy Response to Antibiotic Stress Predicts Subsequent Single Cell Survival in an Acidic Environment.”https://doi.org/10.1016/j.cels.2017.03.001__Cell Systems. Cell Press, 2017.https://doi.org/10.1016/j.cels.2017.03.001 .

Martin Del Campo Sanchez, Abraham, Sarah A Cepeda Humerez, and Caroline Uhler. “Exact Goodness-of-Fit Testing for the Ising Model.”https://doi.org/10.1111/sjos.12251__Scandinavian Journal of Statistics. Wiley-Blackwell, 2017.https://doi.org/10.1111/sjos.12251 .

Deny, Stephane, Ulisse Ferrari, Emilie Mace, Pierre Yger, Romain Caplette, Serge Picaud, Gasper Tkadik, and Olivier Marre. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.”https://doi.org/10.1038/s41467-017-02159-y__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-02159-y .

Levina (Martius), Anna, and Viola Priesemann. “Subsampling Scaling.”https://doi.org/10.1038/ncomms15140__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/ncomms15140 .

Friedlander, Tamar, Roshan Prizak, Nicholas H Barton, and Gasper Tkadik. “Evolution of New Regulatory Functions on Biophysically Realistic Fitness Landscapes.”https://doi.org/10.1038/s41467-017-00238-8__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-00238-8 .

De Martino, Daniele. “Scales and Multimodal Flux Distributions in Stationary Metabolic Network Models via Thermodynamics.”https://doi.org/10.1103/PhysRevE.95.062419__https://doi.org/10.1103/PhysRevE.95.062419__Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics, 2017.https://doi.org/10.1103/PhysRevE.95.062419 .

De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Quantifying the Entropic Cost of Cellular Growth Control.”https://doi.org/10.1103/PhysRevE.96.010401__https://doi.org/10.1103/PhysRevE.96.010401__Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics, 2017.https://doi.org/10.1103/PhysRevE.96.010401 .

Zagórski, Marcin P, Yoji Tabata, Nathalie Brandenberg, Matthias Lutolf, Gasper Tkadik, Tobias Bollenbach, James Briscoe, and Anna Kicheva. “Decoding of Position in the Developing Neural Tube from Antiparallel Morphogen Gradients.”https://doi.org/10.1126/science.aam5887__Science. American Association for the Advancement of Science, 2017.https://doi.org/10.1126/science.aam5887 .

Colabrese, Simona, Daniele De Martino, Luca Leuzzi, and Enzo Marinari. “Phase Transitions in Integer Linear Problems.”https://doi.org/10.1088/1742-5468/aa85c3__https://doi.org/10.1088/1742-5468/aa85c3__Journal of Statistical Mechanics: Theory and Experiment. IOPscience, 2017.https://doi.org/10.1088/1742-5468/aa85c3 .

Savin, Cristina, and Gasper Tkadik. “Maximum Entropy Models as a Tool for Building Precise Neural Controls.”https://doi.org/10.1016/j.conb.2017.08.001__Current Opinion in Neurobiology. Elsevier, 2017.https://doi.org/10.1016/j.conb.2017.08.001 .

De Martino, Daniele. “Maximum Entropy Modeling of Metabolic Networks by Constraining Growth-Rate Moments Predicts Coexistence of Phenotypes.”https://doi.org/10.1103/PhysRevE.96.060401__Physical Review E. American Physical Society, 2017.https://doi.org/10.1103/PhysRevE.96.060401 .

Lang, Moritz, and Eduardo Sontag. “Zeros of Nonlinear Systems with Input Invariances.”https://doi.org/10.1016/j.automatica.2017.03.030__Automatica. International Federation of Automatic Control, 2017.https://doi.org/10.1016/j.automatica.2017.03.030 .

Marre, Olivier, Gasper Tkadik, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. “Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells.”https://doi.org/10.15479/AT:ISTA:61__Institute of Science and Technology Austria, 2017.https://doi.org/10.15479/AT:ISTA:61 .

Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkadik, and Calin C Guet. “Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity.”https://doi.org/10.15479/AT:ISTA:53__Institute of Science and Technology Austria, 2017.https://doi.org/10.15479/AT:ISTA:53 .

Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gasper Tkadik, and Calin C Guet. “Biased Partitioning of the Multidrug Efflux Pump AcrAB TolC Underlies Long Lived Phenotypic Heterogeneity.”https://doi.org/10.1126/science.aaf4762__Science. American Association for the Advancement of Science, 2017.https://doi.org/10.1126/science.aaf4762 .

Barone, Vanessa, Moritz Lang, Gabriel Krens, Saurabh Pradhan, Shayan Shamipour, Keisuke Sako, Mateusz K Sikora, Calin C Guet, and Carl-Philipp J Heisenberg. “An Effective Feedback Loop between Cell-Cell Contact Duration and Morphogen Signaling Determines Cell Fate.”https://doi.org/10.1016/j.devcel.2017.09.014__Developmental Cell. Cell Press, 2017.https://doi.org/10.1016/j.devcel.2017.09.014 .

Chalk, Matthew J, Olivier Marre, and Gasper Tkadik. “Relevant Sparse Codes with Variational Information Bottleneck,” 29:1965–73. Neural Information Processing Systems, 2016.

Savin, Cristina, and Gasper Tkadik. “Estimating Nonlinear Neural Response Functions Using GP Priors and Kronecker Methods,” 29:3610–18. Neural Information Processing Systems, 2016.

Lang, Moritz, and Jörg Stelling. “Modular Parameter Identification of Biomolecular Networks.”https://doi.org/10.1137/15M103306X__SIAM Journal on Scientific Computing. Society for Industrial and Applied Mathematics , 2016.https://doi.org/10.1137/15M103306X .

Tkadik, Gasper. “Understanding Regulatory Networks Requires More than Computing a Multitude of Graph Statistics: Comment on &;quot;Drivers of Structural Features in Gene Regulatory Networks: From Biophysical Constraints to Biological Function&;quot; by O. C. Martin et Al.”https://doi.org/10.1016/j.plrev.2016.06.005__Physics of Life Reviews. Elsevier, 2016.https://doi.org/10.1016/j.plrev.2016.06.005 .

De Martino, Daniele, and Davide Masoero. “Asymptotic Analysis of Noisy Fitness Maximization, Applied to Metabolism &;amp; Growth.”https://doi.org/10.1088/1742-5468/aa4e8f__https://doi.org/10.1088/1742-5468/aa4e8f__Journal of Statistical Mechanics: Theory and Experiment. IOPscience, 2016.https://doi.org/10.1088/1742-5468/aa4e8f .

Hu, Fang, Lavanya Rishishwar, Ambily Sivadas, Gabriel Mitchell, Jordan King, Timothy Murphy, Janet Gilsdorf, Leonard Mayer, and Xin Wang. “Comparative Genomic Analysis of Haemophilus Haemolyticus and Nontypeable Haemophilus Influenzae and a New Testing Scheme for Their Discrimination.”https://doi.org/10.1128/JCM.01511-16__Journal of Clinical Microbiology. American Society for Microbiology, 2016.https://doi.org/10.1128/JCM.01511-16 .

Martius, Georg S, Raphael Hostettler, Alois Knoll, and Ralf Der. “Compliant Control for Soft Robots: Emergent Behavior of a Tendon Driven Anthropomorphic Arm,”https://doi.org/10.1109/IROS.2016.7759138__Vol. 2016–November. IEEE, 2016.https://doi.org/10.1109/IROS.2016.7759138 .

Miki, Gregor, Alex Stoll, Joe Bevirt, Rok Grah, and Mark Moore. “Fuselage Boundary Layer Ingestion Propulsion Applied to a Thin Haul Commuter Aircraft for Optimal Efficiency,”https://doi.org/10.2514/6.2016-3764__1–19. AIAA, 2016.https://doi.org/10.2514/6.2016-3764 .

Sokolowski, Thomas R, Aleksandra Walczak, William Bialek, and Gasper Tkadik. “Extending the Dynamic Range of Transcription Factor Action by Translational Regulation.”https://doi.org/10.1103/PhysRevE.93.022404__Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics, 2016.https://doi.org/10.1103/PhysRevE.93.022404 .

Recouvreux, Pierre, Thomas R Sokolowski, Aristea Grammoustianou, Pieter Tenwolde, and Marileen Dogterom. “Chimera Proteins with Affinity for Membranes and Microtubule Tips Polarize in the Membrane of Fission Yeast Cells.”https://doi.org/10.1073/pnas.1419248113__PNAS. National Academy of Sciences, 2016.https://doi.org/10.1073/pnas.1419248113 .

Tkadik, Gasper, and William Bialek. “Information Processing in Living Systems.”https://doi.org/10.1146/annurev-conmatphys-031214-014803__Annual Review of Condensed Matter Physics. Annual Reviews, 2016.https://doi.org/10.1146/annurev-conmatphys-031214-014803 .

De Martino, Daniele. “The Dual of the Space of Interactions in Neural Network Models.”https://doi.org/10.1142/S0129183116500674__International Journal of Modern Physics C. World Scientific Publishing, 2016.https://doi.org/10.1142/S0129183116500674 .

Chalk, Matthew J, Boris Gutkin, and Sophie Denève. “Neural Oscillations as a Signature of Efficient Coding in the Presence of Synaptic Delays.”https://doi.org/10.7554/eLife.13824__ELife. eLife Sciences Publications, 2016.https://doi.org/10.7554/eLife.13824 .

Stone, Laura, Michael Baym, Tami Lieberman, Remy P Chait, Jon Clardy, and Roy Kishony. “Compounds That Select against the Tetracycline-Resistance Efflux Pump.”https://doi.org/10.1038/nchembio.2176__Nature Chemical Biology. Nature Publishing Group, 2016.https://doi.org/10.1038/nchembio.2176 .

Lang, Moritz, and Eduardo Sontag. “Scale-Invariant Systems Realize Nonlinear Differential Operators,”https://doi.org/10.1109/ACC.2016.7526722__Vol. 2016–July. IEEE, 2016.https://doi.org/10.1109/ACC.2016.7526722 .

Chait, Remy P, Adam Palmer, Idan Yelin, and Roy Kishony. “Pervasive Selection for and against Antibiotic Resistance in Inhomogeneous Multistress Environments.”https://doi.org/10.1038/ncomms10333__Nature Communications. Nature Publishing Group, 2016.https://doi.org/10.1038/ncomms10333 .

Baym, Michael, Tami Lieberman, Eric Kelsic, Remy P Chait, Rotem Gross, Idan Yelin, and Roy Kishony. “Spatiotemporal Microbial Evolution on Antibiotic Landscapes.”https://doi.org/10.1126/science.aag0822__Science. American Association for the Advancement of Science, 2016.https://doi.org/10.1126/science.aag0822 .

De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Growth against Entropy in Bacterial Metabolism: The Phenotypic Trade-off behind Empirical Growth Rate Distributions in E. Coli.”https://doi.org/10.1088/1478-3975/13/3/036005__Physical Biology. IOP Publishing Ltd., 2016.https://doi.org/10.1088/1478-3975/13/3/036005 .

Bodova, Katarina, Gasper Tkadik, and Nicholas H Barton. “A General Approximation for the Dynamics of Quantitative Traits.”https://doi.org/10.1534/genetics.115.184127__Genetics. Genetics Society of America, 2016.https://doi.org/10.1534/genetics.115.184127 .

De Martino, Daniele. “Genome-Scale Estimate of the Metabolic Turnover of E. Coli from the Energy Balance Analysis.”https://doi.org/10.1088/1478-3975/13/1/016003__Physical Biology. IOP Publishing Ltd., 2016.https://doi.org/10.1088/1478-3975/13/1/016003 .

Schilling, Christian, Sergiy Bogomolov, Thomas A Henzinger, Andreas Podelski, and Jakob Ruess. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.”https://doi.org/10.1016/j.biosystems.2016.07.005__Biosystems. Elsevier, 2016.https://doi.org/10.1016/j.biosystems.2016.07.005 .

Martius, Georg S, Rafael Hostettler, Alois Knoll, and Ralf Der. “Self-Organized Control of an Tendon Driven Arm by Differential Extrinsic Plasticity.”https://doi.org/10.7551/978-0-262-33936-0-ch029__In Proceedings of the Artificial Life Conference 2016, 28:142–43. MIT Press, 2016.https://doi.org/10.7551/978-0-262-33936-0-ch029 .

Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gasper Tkadik, and Michael Berry. “Error-Robust Modes of the Retinal Population Code.”https://doi.org/10.1371/journal.pcbi.1005148__PLoS Computational Biology. Public Library of Science, 2016.https://doi.org/10.1371/journal.pcbi.1005148 .

Monk, Travis, Cristina Savin, and Jörg Lücke. “Neurons Equipped with Intrinsic Plasticity Learn Stimulus Intensity Statistics,” 29:4285–93. Neural Information Processing Systems, 2016.

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information.”https://doi.org/10.1371/journal.pone.0163628__PLoS One. Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628 .

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Computation of Positional Information in an Ising Model.”https://doi.org/10.1371/journal.pone.0163628.s002__Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628.s002 .

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Error Bound on an Estimator of Position.”https://doi.org/10.1371/journal.pone.0163628.s001__Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628.s001 .

Hillenbrand, Patrick, Ulrich Gerland, and Gasper Tkadik. “Computation of Positional Information in a Discrete Morphogen Field.”https://doi.org/10.1371/journal.pone.0163628.s003__Public Library of Science, 2016.https://doi.org/10.1371/journal.pone.0163628.s003 .

Rieckh, Georg. “Studying the Complexities of Transcriptional Regulation.” Institute of Science and Technology Austria, 2016.

Friedlander, Tamar, Roshan Prizak, Calin C Guet, Nicholas H Barton, and Gasper Tkadik. “Intrinsic Limits to Gene Regulation by Global Crosstalk.”https://doi.org/10.1038/ncomms12307__Nature Communications. Nature Publishing Group, 2016.https://doi.org/10.1038/ncomms12307 .

Parise, Francesca, John Lygeros, and Jakob Ruess. “Bayesian Inference for Stochastic Individual-Based Models of Ecological Systems: A Pest Control Simulation Study.”https://doi.org/10.3389/fenvs.2015.00042__Frontiers in Environmental Science. Frontiers, 2015.https://doi.org/10.3389/fenvs.2015.00042 .

Ruess, Jakob. “Minimal Moment Equations for Stochastic Models of Biochemical Reaction Networks with Partially Finite State Space.”https://doi.org/10.1063/1.4937937__Journal of Chemical Physics. American Institute of Physics, 2015.https://doi.org/10.1063/1.4937937 .

Ruess, Jakob, Francesca Parise, Andreas Milias Argeitis, Mustafa Khammash, and John Lygeros. “Iterative Experiment Design Guides the Characterization of a Light-Inducible Gene Expression Circuit.”https://doi.org/10.1073/pnas.1423947112__PNAS. National Academy of Sciences, 2015.https://doi.org/10.1073/pnas.1423947112 .

Gilson, Matthieu, Cristina Savin, and Friedemann Zenke. “Editorial: Emergent Neural Computation from the Interaction of Different Forms of Plasticity.”https://doi.org/10.3389/fncom.2015.00145__Frontiers in Computational Neuroscience. Frontiers Research Foundation, 2015.https://doi.org/10.3389/fncom.2015.00145 .