Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkadik, J.P. Bollback, C.C. Guet, (2018).
LibreCat: https://research-explorer.ista.ac.at/record/5585
DOI: 10.15479/AT:ISTA:108

Data from: Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkadik, M. Berry, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9709
DOI: 10.5061/dryad.1f1rc

Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification
M. Pleska, C.C. Guet, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9847
DOI: 10.6084/m9.figshare.5633917.v1

Mathematical model
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9845
DOI: 10.1371/journal.pgen.1007122.s017

Modelling and simulation details
M. Lukacisinova, S. Novak, T. Paixao, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9849
DOI: 10.1371/journal.pcbi.1005609.s001

Extensions of the model
M. Lukacisinova, S. Novak, T. Paixao, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9850
DOI: 10.1371/journal.pcbi.1005609.s002

Supplementary methods
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9846
DOI: 10.1371/journal.pgen.1007122.s016

Heuristic prediction for multiple stresses
M. Lukacisinova, S. Novak, T. Paixao, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9851
DOI: 10.1371/journal.pcbi.1005609.s003

Resistance frequencies for different combination strategies
M. Lukacisinova, S. Novak, T. Paixao, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9852
DOI: 10.1371/journal.pcbi.1005609.s004

Supplementary appendix
M.J. Chalk, P. Masset, B. Gutkin, S. Denève, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9855
DOI: 10.1371/journal.pcbi.1005582.s001

Data from: Ret and Et promote directed movements of progenitor cells during renal branching morphogenesis
P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, F. Costantini, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9707
DOI: 10.5061/dryad.pk16b

Source data for figures and tables
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9844
DOI: 10.1371/journal.pgen.1007122.s018

Data for: Establishment in a new habitat by polygenic adaptation
A. Etheridge, N.H. Barton, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9842
DOI: 10.17632/nw68fxzjpm.1

Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster
E. Argyridou, A.K. Huylmans, A. Königer, J. Parsch, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9861
DOI: 10.5061/dryad.02f6r

Additional file 1: Table . of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae
J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9859
DOI: 10.6084/m9.figshare.c.3756974_d1.v1

Additional file 5: Table . of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae
J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9860
DOI: 10.6084/m9.figshare.c.3756974_d5.v1

Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9858
DOI: 10.1371/journal.pbio.2001894.s016

Supporting information concerning observed wMel frequencies and analyses of habitat variables
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9857
DOI: 10.1371/journal.pbio.2001894.s015

Supporting Information concerning additional likelihood analyses and results
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9856
DOI: 10.1371/journal.pbio.2001894.s014

Raw data from ant queens increase their reproductive efforts after pathogen infection
J. Giehr, A.V. Grasse, S. Cremer, J. Heinze, A. Schrempf, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/9853
DOI: 10.6084/m9.figshare.5117788.v1

Multi-electrode array recording from salamander retinal ganglion cells
O. Marre, G. Tkadik, D. Amodei, E. Schneidman, W. Bialek, M. Berry, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5562
DOI: 10.15479/AT:ISTA:61

Graph matching problems for annotating C. Elegans
D. Kainmueller, F. Jug, C. Rother, G. Meyers, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5561
DOI: 10.15479/AT:ISTA:57

MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
M. Lukacisin, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5563
DOI: 10.15479/AT:ISTA:64

Fastq files for "Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection"
M. Steinrück, C.C. Guet, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5564
DOI: 10.15479/AT:ISTA:65

Source codes: Brittle fracture simulation with boundary elements for computer graphics
D. Hahn, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5568
DOI: 10.15479/AT:ISTA:73

Supplementary Files for "The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W"
C. Fraisse, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/7163
DOI: 10.15479/AT:ISTA:7163

Forward migration indexes
R. Hauschild, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5570
DOI: 10.15479/AT:ISTA:75

Immunological synapse DC-Tcells
A.F. Leithner, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5567
DOI: 10.15479/AT:ISTA:71

Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity
T. Bergmiller, A.M. Andersson, K. Tomasek, E. Balleza, D. Kiviet, R. Hauschild, G. Tkadik, C.C. Guet, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5560
DOI: 10.15479/AT:ISTA:53

Data for "The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology"
B. Vicoso, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5571
DOI: 10.15479/AT:ISTA:78

Strong amplifiers of natural selection
A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak , (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5559
DOI: 10.15479/AT:ISTA:51

Code for "The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology"
B. Vicoso, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5572
DOI: 10.15479/AT:ISTA:79 

Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel
D. von Wangenheim, R. Hauschild, J. Friml, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5565
DOI: 10.15479/AT:ISTA:66

Live tracking of moving samples in confocal microscopy for vertically grown roots
R. Hauschild, (2017).
LibreCat: https://research-explorer.ista.ac.at/record/5566
DOI: 10.15479/AT:ISTA:69

Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees
D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9720
DOI: 10.5061/dryad.4b565

Experimental game instructions
C. Hilbe, K. Hagel, M. Milinski, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9867
DOI: 10.1371/journal.pone.0163867.s008

Simulation study to test the robustness of ABC in face of recent times of divergence
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9862
DOI: 10.1371/journal.pbio.2000234.s016

Accessions of surveyed individuals, geographic locations and summary statistics
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9863
DOI: 10.1371/journal.pbio.2000234.s017

ZIP-archived directory containing all data and computer programs
M.P. Zagórski, Z. Burda, B. Wacaw, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9866
DOI: 10.1371/journal.pcbi.1005218.s009

Data from: Elevated virulence of an emerging viral genotype as a driver of honeybee loss
D. Mcmahon, M. Natsopoulou, V. Doublet, M. Fürst, S. Weging, M. Brown, A. Gogol Döring, R. Paxton, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9704
DOI: 10.5061/dryad.cq7t1

Computation of positional information in an Ising model
P. Hillenbrand, U. Gerland, G. Tkadik, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9870
DOI: 10.1371/journal.pone.0163628.s002

Quantification of the growth rate reduction as a consequence of age-specific mortality
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, M. Ackermann, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9873
DOI: 10.1371/journal.pgen.1005974.s015

Error bound on an estimator of position
P. Hillenbrand, U. Gerland, G. Tkadik, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9869
DOI: 10.1371/journal.pone.0163628.s001

Computation of positional information in a discrete morphogen field
P. Hillenbrand, U. Gerland, G. Tkadik, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9871
DOI: 10.1371/journal.pone.0163628.s003

Experimental data
C. Hilbe, K. Hagel, M. Milinski, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9868
DOI: 10.1371/journal.pone.0163867.s009

Data from: How does epistasis influence the response to selection?
N.H. Barton, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9710
DOI: 10.5061/dryad.s5s7r

Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the =54 phage family
R.A. Fernandes Redondo, H. de Vladar, T. Wodarski, J.P. Bollback, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/9864
DOI: 10.6084/m9.figshare.4315652.v1

Flower colour data and phylogeny (NEXUS) files
T. Ellis, D. Field, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/5550
DOI: 10.15479/AT:ISTA:34

Fiji script to determine average speed and direction of migration of cells
R. Hauschild, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/5555
DOI: 10.15479/AT:ISTA:44

Synthetic discrete tomography problems
P. Swoboda, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/5557
DOI: 10.15479/AT:ISTA:46

Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012
D. Field, T. Ellis, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/5553
DOI: 10.15479/AT:ISTA:37

Data on pollinator observations and offpsring phenotypes
T. Ellis, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/5551
DOI: 10.15479/AT:ISTA:35

Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data.
T. Ellis, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/5552
DOI: 10.15479/AT:ISTA:36

Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase
M. Tugrul, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/5554
DOI: 10.15479/AT:ISTA:43

Tracking, Correcting and Absorbing Water Surface Waves
M. Bojsen-Hansen, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/5558
DOI: 10.15479/AT:ISTA:48

MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
M. Lukacisin, M. Landon, R. Jajoo, (2016).
LibreCat: https://research-explorer.ista.ac.at/record/5556
DOI: 10.15479/AT:ISTA:45

Excel file containing the raw data for all figures
G. Chevereau, M. Lukacisinova, T. Batur, A. Guvenek, D.H. Ayhan, E. Toprak, M.T. Bollenbach, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9711
DOI: 10.1371/journal.pbio.1002299.s001

Data from: Opposing effects of allogrooming on disease transmission in ant societies
F. Theis, L.V. Ugelvig, C. Marr, S. Cremer, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9721
DOI: 10.5061/dryad.dj2bf

Supporting information text
T. Friedlander, A.E. Mayo, T. Tlusty, U. Alon, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9718
DOI: 10.1371/journal.pcbi.1004055.s001

Root traits computed by DynamicRoots for the maize root shown in fig 2
O. Symonova, C. Topp, H. Edelsbrunner, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9737
DOI: 10.1371/journal.pone.0127657.s001

Description of the agent based simulations
B. Trubenova, S. Novak, R. Hager, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9772
DOI: 10.1371/journal.pone.0126907.s003

Evolutionary simulation code
T. Friedlander, A.E. Mayo, T. Tlusty, U. Alon, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9773
DOI: 10.1371/journal.pcbi.1004055.s002

Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkadik, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9712
DOI: 10.1371/journal.pgen.1005639.s001

An exploration of the universe of polyglutamine structures - submission to PLOS journals
À. Gómez Sicilia, M.K. Sikora, M. Cieplak, M. Carrión Vázquez, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9714
DOI: 10.1371/journal.pcbi.1004541.s001

Mathematical inference of the results
B. Trubenova, S. Novak, R. Hager, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9715
DOI: 10.1371/journal.pone.0126907.s001

Data from: Increased grooming after repeated brood care provides sanitary benefits in a clonal ant
C. Westhus, L.V. Ugelvig, E. Tourdot, J. Heinze, C. Doums, S. Cremer, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9742
DOI: 10.5061/dryad.7kc79

Gene ontology enrichment analysis for the most sensitive gene deletion strains for all drugs
G. Chevereau, M. Lukacisinova, T. Batur, A. Guvenek, D.H. Ayhan, E. Toprak, M.T. Bollenbach, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9765
DOI: 10.1371/journal.pbio.1002299.s008

Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/9719
DOI: 10.5061/dryad.cj910

Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes
A. Fellner, (2015).
LibreCat: https://research-explorer.ista.ac.at/record/5549
DOI: 10.15479/AT:ISTA:28

gIPFrm: Generalized iterative proportional fitting for relational models
A. Klimova, T. Rudas, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/2007

Data from: Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9747
DOI: 10.5061/dryad.s42n1

Supporting information
S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9888
DOI: 10.1371/journal.pone.0103989.s003

Transition probability between TF expression states when Db inhibits Nk.2
A. Lovrics, Y. Gao, B. Juhász, I. Bock, H.M. Byrne, A. Dinnyés, K. Kovács, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9722
DOI: 10.1371/journal.pone.0111430.s006

Data from: Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host
M. Konrad, A.V. Grasse, S. Tragust, S. Cremer, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9740
DOI: 10.5061/dryad.vm0vc

Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9741
DOI: 10.5061/dryad.85dn7

Detailed proofs for cThe time scale of evolutionary innovationd
K. Chatterjee, A. Pavlogiannis, B. Adlam, M. Novak, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9739
DOI: 10.1371/journal.pcbi.1003818.s001

Data from: Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies
S. Tragust, L.V. Ugelvig, M. Chapuisat, J. Heinze, S. Cremer, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9753
DOI: 10.5061/dryad.nc0gc

Data from: Transformation of stimulus correlations by the retina
K. Simmons, J. Prentice, G. Tkadik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9752
DOI: 10.5061/dryad.246qg

Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes
R. Dhar, T. Bergmiller, A. Wagner, (2014).
LibreCat: https://research-explorer.ista.ac.at/record/9932
DOI: 10.5061/dryad.jc402

Forgiver triumphs in alternating prisoner's dilemma 
B. Zagorsky, J. Reiter, K. Chatterjee, M. Nowak, (2013).
LibreCat: https://research-explorer.ista.ac.at/record/9749
DOI: 10.1371/journal.pone.0080814.s001

Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies
J. Hearn, G. Stone, N.H. Barton, K. Lohse, L. Bunnefeld, (2013).
LibreCat: https://research-explorer.ista.ac.at/record/9754
DOI: 10.5061/dryad.r3r60

Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection
D. Refardt, T. Bergmiller, R. Kümmerli, (2013).
LibreCat: https://research-explorer.ista.ac.at/record/9751
DOI: 10.5061/dryad.b1q2n

Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies
M. Konrad, M. Vyleta, F. Theis, M. Stock, M. Klatt, V. Drescher, C. Marr, L.V. Ugelvig, S. Cremer, (2012).
LibreCat: https://research-explorer.ista.ac.at/record/9755
DOI: 10.5061/dryad.sv37s

Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates
S. Aeschbacher, A. Futschik, M. Beaumont, (2012).
LibreCat: https://research-explorer.ista.ac.at/record/9758
DOI: 10.5061/dryad.274b1

Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison
S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, (2012).
LibreCat: https://research-explorer.ista.ac.at/record/9757
DOI: 10.5061/dryad.61649

Data from: A likelihood-based comparison of population histories in a parasitoid guild
K. Lohse, N.H. Barton, G. Stone, G. Melika, (2012).
LibreCat: https://research-explorer.ista.ac.at/record/13075
DOI: 10.5061/DRYAD.0G0FS

Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas)
F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, (2011).
LibreCat: https://research-explorer.ista.ac.at/record/9762
DOI: 10.5061/dryad.299h8

Heterosis and the drift load
U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, (2010).
LibreCat: https://research-explorer.ista.ac.at/record/9764
DOI: 10.1371/journal.pbio.1000429.s003