Systematic discovery of drug interaction mechanisms
G. Chevereau, M.T. Bollenbach, Molecular Systems Biology 11 (2015).
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Evolutionary games of condensates in coupled birth-death processes
J. Knebel, M. Weber, T.H. Krüger, E. Frey, Nature Communications 6 (2015).
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Sociality and health: Impacts of sociality on disease susceptibility and transmission in animal and human societies
P. Kappeler, S. Cremer, C. Nunn, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 370 (2015).
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Invariant measures of genetic recombination process
A. Akopyan, S. Pirogov, A. Rybko, Journal of Statistical Physics 160 (2015) 163–167.
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Segment abstraction for worst-case execution time analysis
P. Cerny, T.A. Henzinger, L. Kovács, A. Radhakrishna, J. Zwirchmayr, 9032 (2015) 105–131.
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Assume-guarantee synthesis for concurrent reactive programs with partial information
R. Bloem, K. Chatterjee, S. Jacobs, R. Könighofer, in:, Springer, 2015, pp. 517–532.
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Multigain: A controller synthesis tool for MDPs with multiple mean-payoff objectives
T. Brázdil, K. Chatterjee, V. Forejt, A. Kudera, 9035 (2015) 181–187.
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Subcritical versus supercritical transition to turbulence in curved pipes
J. Kühnen, P. Braunshier, M. Schwegel, H. Kuhlmann, B. Hof, Journal of Fluid Mechanics 770 (2015).
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FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors
B. Schwamb, R. Pick, S. Fernández, K. Völp, J. Heering, V. Dötsch, S. Bösser, J. Jung, R. Beinoravidiute Kellner, J. Wesely, I. Zörnig, M. Hammerschmidt, M. Nowak, R. Penzel, K. Zatloukal, S. Joos, R. Rieker, A. Agaimy, S. Söder, K. Reid Lombardo, M. Kendrick, M. Bardsley, Y. Hayashi, D. Asuzu, S. Syed, T. Ördög, M. Zörnig, International Journal of Cancer 137 (2015) 1318–1329.
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Refinement checking on parametric modal transition systems
N. Benes, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, J. Srba, Acta Informatica 52 (2015) 269–297.
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Excitement about inhibitory presynaptic terminals
D.H. Vandael, C. Espinoza Martinez, P.M. Jonas, Neuron 85 (2015) 1149–1151.
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Optimal Kullback-Leibler aggregation via information bottleneck
B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.
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A new look at reweighted message passing
V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence 37 (2015) 919–930.
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Calcium is an organizer of cell polarity in plants
E. Himschoot, T. Beeckman, J. Friml, S. Vanneste, Biochimica et Biophysica Acta - Molecular Cell Research 1853 (2015) 2168–2172.
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AB: Finally docking
P. Grones, J. Friml, Molecular Plant 8 (2015) 356–358.
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Fungal disease dynamics in insect societies: Optimal killing rates and the ambivalent effect of high social interaction rates
S. Novak, S. Cremer, Journal of Theoretical Biology 372 (2015) 54–64.
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Evolutionarily stable mating decisions for sequentially searching females and the stability of reproductive isolation by assortative mating
T. Priklopil, E. Kisdi, M. Gyllenberg, Evolution 69 (2015) 1015–1026.
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A multi-plane block-coordinate Frank-Wolfe algorithm for training structural SVMs with a costly max-oracle
N. Shah, V. Kolmogorov, C. Lampert, in:, IEEE, 2015, pp. 2737–2745.
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Classifier adaptation at prediction time
A. Royer, C. Lampert, in:, IEEE, 2015, pp. 1401–1409.
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Predicting the future behavior of a time-varying probability distribution
C. Lampert, in:, IEEE, 2015, pp. 942–950.
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Curriculum learning of multiple tasks
A. Pentina, V. Sharmanska, C. Lampert, in:, IEEE, 2015, pp. 5492–5500.
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Quantification of riboflavin, flavin mononucleotide, and flavin adenine dinucleotide in mammalian model cells by CE with LED-induced fluorescence detection
J. Hühner, Á. Inglés Prieto, C. Neusüß, M. Lämmerhofer, H.L. Janovjak, Electrophoresis 36 (2015) 518–525.
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Plant embryogenesis requires AUX/LAX-mediated auxin influx
H. Robert, W. Grunewald, M. Sauer, B. Cannoot, M. Soriano, R. Swarup, D. Weijers, M. Bennett, K. Boutilier, J. Friml, Development 142 (2015) 702–711.
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Early effect in time-dependent, high-dimensional nonlinear dynamical systems with multiple resonances
Y. Park, Y. Do, S. Altmeyer, Y. Lai, G. Lee, Physical Review E 91 (2015).
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The Altshuler–Shklovskii formulas for random band matrices II: The general case
L. Erdös, A. Knowles, Annales Henri Poincare 16 (2015) 709–799.
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Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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The equivalence problem for finite automata: Technical perspective
T.A. Henzinger, J. Raskin, Communications of the ACM 58 (2015) 86–86.
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Auxin transporters and binding proteins at a glance
P. Grones, J. Friml, Journal of Cell Science 128 (2015) 1–7.
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A three-plane architectonic atlas of the rat hippocampal region
C.N. Boccara, L. Kjønigsen, I. Hammer, J. Bjaalie, T. Leergaard, M. Witter, Hippocampus 25 (2015) 838–857.
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POMDPs under probabilistic semantics
K. Chatterjee, M. Chmelik, Artificial Intelligence 221 (2015) 46–72.
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Developing 3D SEM in a broad biological context
A. Kremer, S. Lippens, S. Bartunkova, B. Asselbergh, C. Blanpain, M. Fendrych, A. Goossens, M. Holt, S. Janssens, M. Krols, J. Larsimont, C. Mc Guire, M. Nowack, X. Saelens, A. Schertel, B. Schepens, M. Slezak, V. Timmerman, C. Theunis, R. Van Brempt, Y. Visser, C. Guérin, Journal of Microscopy 259 (2015) 80–96.
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Superfluid behavior of a Bose-Einstein condensate in a random potential
M. Könenberg, T. Moser, R. Seiringer, J. Yngvason, New Journal of Physics 17 (2015).
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Compositionality for quantitative specifications
U. Fahrenberg, J. Kretinsky, A. Legay, L. Traonouez, in:, Springer, 2015, pp. 306–324.
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Anomalous scaling in an age-dependent branching model
S. Keller-Schmidt, M. Tugrul, V. Eguíluz, E. Hernandez Garcia, K. Klemm, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
LibreCat: https://research-explorer.ista.ac.at/record/1883
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arXiv: 1012.3298

Phylogenetic relationships of Petrocoptis A. Braun ex Endl. (Caryophyllaceae), a discussed genus from the Iberian Peninsula
E. Cires Rodriguez, J. Prieto, Journal of Plant Research 128 (2015) 223–238.
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Positional information, positional error, and readout precision in morphogenesis: A mathematical framework
G. Tkadik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
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Optimizing information flow in small genetic networks. IV. Spatial coupling
T.R. Sokolowski, G. Tkadik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
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On the distribution of local extrema in quantum chaos
F. Pausinger, S. Steinerberger, Physics Letters, Section A 379 (2015) 535–541.
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Intracellular trafficking and PIN-mediated cell polarity during tropic responses in plants
H. Rakusová, M. Fendrych, J. Friml, Current Opinion in Plant Biology 23 (2015) 116–123.
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Succinct representation of concurrent trace sets
A. Gupta, T.A. Henzinger, A. Radhakrishna, R. Samanta, T. Tarrach, in:, ACM, 2015, pp. 433–444.
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The three-state toric homogeneous Markov chain model has Markov degree two
P. Noren, Journal of Symbolic Computation 68/Part 2 (2015) 285–296.
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Iterative scaling in curved exponential families
A. Klimova, T. Rudas, Scandinavian Journal of Statistics 42 (2015) 832–847.
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The monotone secant conjecture in the real Schubert calculus
N. Hein, C. Hillar, A. Martin del Campo Sanchez, F. Sottile, Z. Teitler, Experimental Mathematics 24 (2015) 261–269.
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Faithfulness and learning hypergraphs from discrete distributions
A. Klimova, C. Uhler, T. Rudas, Computational Statistics &; Data Analysis 87 (2015) 57–72.
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The yeast Arf-GAP Glo3p is required for the endocytic recycling of cell surface proteins
D. Kawada, H. Kobayashi, T. Tomita, E. Nakata, M. Nagano, D.E. Siekhaus, J. Toshima, J. Toshimaa, Biochimica et Biophysica Acta - Molecular Cell Research 1853 (2015) 144–156.
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A hybrid MPI-OpenMP parallel implementation for pseudospectral simulations with application to Taylor-Couette flow
L. Shi, M. Rampp, B. Hof, M. Avila, Computers and Fluids 106 (2015) 1–11.
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The persistent homology of a self-map
H. Edelsbrunner, G. Jablonski, M. Mrozek, Foundations of Computational Mathematics 15 (2015) 1213–1244.
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Probabilistic opacity for Markov decision processes
B. Bérard, K. Chatterjee, N. Sznajder,  Information Processing Letters 115 (2015) 52–59.
LibreCat: https://research-explorer.ista.ac.at/record/2034
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Collective excitations of Bose gases in the mean-field regime
P. Nam, R. Seiringer, Archive for Rational Mechanics and Analysis 215 (2015) 381–417.
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The Altshuler-Shklovskii formulas for random band matrices I: the unimodular case
L. Erdös, A. Knowles, Communications in Mathematical Physics 333 (2015) 1365–1416.
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Aspect-oriented linearizability proofs
S. Chakraborty, T.A. Henzinger, A. Sezgin, V. Vafeiadis, Logical Methods in Computer Science 11 (2015).
LibreCat: https://research-explorer.ista.ac.at/record/1832
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The power of linear programming for general-valued CSPs
V. Kolmogorov, J. Thapper, S. divný, SIAM Journal on Computing 44 (2015) 1–36.
LibreCat: https://research-explorer.ista.ac.at/record/2271
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arXiv: 1311.4219

Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, Theoretical Computer Science 573 (2015) 71–89.
LibreCat: https://research-explorer.ista.ac.at/record/1598
DOI: 10.1016/j.tcs.2015.01.050
arXiv: 1202.4175

Homological reconstruction and simplification in 
D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, Computational Geometry: Theory and Applications 48 (2015) 606–621.
LibreCat: https://research-explorer.ista.ac.at/record/1805
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Randomness for free
K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, Information and Computation 245 (2015) 3–16.
LibreCat: https://research-explorer.ista.ac.at/record/1731
DOI: 10.1016/j.ic.2015.06.003

Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, Journal of the ACM 62 (2015).
LibreCat: https://research-explorer.ista.ac.at/record/1856
DOI: 10.1145/2699430

Improved algorithms for one-pair and k-pair Streett objectives
K. Chatterjee, M.H. Henzinger, V. Loitzenbauer, in:, Proceedings - Symposium on Logic in Computer Science, IEEE, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/1661
DOI: 10.1109/LICS.2015.34

Derivation of nonlinear gibbs measures from many-body quantum mechanics
M. Lewin, P. Nam, N. Rougerie, Journal de l’Ecole Polytechnique - Mathematiques 2 (2015) 65–115.
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The serotonin receptor 5-HR regulates the morphology and migratory properties of dendritic cells
K. Holst, D. Guseva, S. Schindler, M.K. Sixt, A. Braun, H. Chopra, O. Pabst, E. Ponimaskin, Journal of Cell Science 128 (2015) 2866–2880.
LibreCat: https://research-explorer.ista.ac.at/record/477
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Looking at mean-payoff and total-payoff through windows
K. Chatterjee, L. Doyen, M. Randour, J. Raskin, Information and Computation 242 (2015) 25–52.
LibreCat: https://research-explorer.ista.ac.at/record/523
DOI: 10.1016/j.ic.2015.03.010

EIN2-directed translational regulation of ethylene signaling in arabidopsis
W. Li, M. Ma, Y. Feng, H. Li, Y. Wang, Y. Ma, M. Li, F. An, H. Guo, Cell 163 (2015) 670–683.
LibreCat: https://research-explorer.ista.ac.at/record/532
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Qualitative analysis of concurrent mean payoff games
K. Chatterjee, R. Ibsen-Jensen, Information and Computation 242 (2015) 2–24.
LibreCat: https://research-explorer.ista.ac.at/record/524
DOI: 10.1016/j.ic.2015.03.009
arXiv: 1409.5306

Automatic generation of alternative starting positions for simple traditional board games
U. Ahmed, K. Chatterjee, S. Gulwani, in:, Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence, AAAI Press, 2015, pp. 745–752.
LibreCat: https://research-explorer.ista.ac.at/record/1481

Qualitative analysis of POMDPs with temporal logic specifications for robotics applications
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, in:, IEEE, 2015, pp. 325–330.
LibreCat: https://research-explorer.ista.ac.at/record/1732
DOI: 10.1109/ICRA.2015.7139019
arXiv: 1409.3360

The patience of concurrent stochastic games with safety and reachability objectives
K. Chatterjee, R. Ibsen-Jensen, K. Hansen, The Patience of Concurrent Stochastic Games with Safety and Reachability Objectives, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5431
DOI: 10.15479/AT:IST-2015-322-v1-1

Optimal cost indefinite-horizon reachability in goal DEC-POMDPs
1 Anonymous, 2 Anonymous, Optimal Cost Indefinite-Horizon Reachability in Goal DEC-POMDPs, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5434

Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komárková, J. Kretinsky, (2015) 244–256.
LibreCat: https://research-explorer.ista.ac.at/record/1657
DOI: 10.1109/LICS.2015.32

Nested weighted automata
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Proceedings - Symposium on Logic in Computer Science, IEEE, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/1656
DOI: 10.1109/LICS.2015.72
arXiv: 1606.03598

Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komarkova, J. Kretinsky, Unifying Two Views on Multiple Mean-Payoff Objectives in Markov Decision Processes, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5429
DOI: 10.15479/AT:IST-2015-318-v1-1

Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komarkova, J. Kretinsky, Unifying Two Views on Multiple Mean-Payoff Objectives in Markov Decision Processes, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5435
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Nested weighted automata
K. Chatterjee, T.A. Henzinger, J. Otop, Nested Weighted Automata, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5436
DOI: 10.15479/AT:IST-2015-170-v2-2

The target discounted-sum problem
U. Boker, T.A. Henzinger, J. Otop, in:, LICS, IEEE, 2015, pp. 750–761.
LibreCat: https://research-explorer.ista.ac.at/record/1659
DOI: 10.1109/LICS.2015.74

Edit distance for pushdown automata
K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, in:, 42nd International Colloquium, Springer Nature, 2015, pp. 121–133.
LibreCat: https://research-explorer.ista.ac.at/record/1610
DOI: 10.1007/978-3-662-47666-6_10
arXiv: 1504.08259

Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Faster Algorithms for Quantitative Verification in Constant Treewidth Graphs, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5437
DOI: 10.15479/AT:IST-2015-330-v2-1

Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Faster Algorithms for Quantitative Verification in Constant Treewidth Graphs, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5430
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The target discounted-sum problem
U. Boker, T.A. Henzinger, J. Otop, The Target Discounted-Sum Problem, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5439
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Edit distance for pushdown automata
K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, Edit Distance for Pushdown Automata, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5438
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The complexity of evolutionary games on graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolutionary Games on Graphs, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5440
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The complexity of evolutionary games on graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolutionary Games on Graphs, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5432
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Reconstructing robust phylogenies of metastatic cancers
J. Reiter, A. Makohon-Moore, J. Gerold, I. Bozic, K. Chatterjee, C. Iacobuzio-Donahue, B. Vogelstein, M. Nowak, Reconstructing Robust Phylogenies of Metastatic Cancers, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5444
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A symbolic SAT-based algorithm for almost-sure reachability with small strategies in POMDPs
K. Chatterjee, M. Chmelik, J. Davies, A Symbolic SAT-Based Algorithm for Almost-Sure Reachability with Small Strategies in POMDPs, IST Austria, 2015.
LibreCat: https://research-explorer.ista.ac.at/record/5443
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On generalized Heawood inequalities for manifolds: A Van Kampen–Flores-type nonembeddability result
X. Goaoc, I. Mabillard, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2015, pp. 476–490.
LibreCat: https://research-explorer.ista.ac.at/record/1511
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The complexity of general-valued CSPs
V. Kolmogorov, A. Krokhin, M. Rolinek, in:, IEEE, 2015, pp. 1246–1258.
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Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis
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Excel file containing the raw data for all figures
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A sting in the spit: Widespread cross-infection of multiple RNA viruses across wild and managed bees
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Data from: Opposing effects of allogrooming on disease transmission in ant societies
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Supporting information text
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Root traits computed by DynamicRoots for the maize root shown in fig 2
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Evolution of bow-tie architectures in biology
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Indirect genetic effects and the dynamics of social interactions
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Description of the agent based simulations
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Evolutionary simulation code
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An exploration of the universe of polyglutamine structures
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Other fitness models for comparison & for interacting TFBSs
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An exploration of the universe of polyglutamine structures - submission to PLOS journals
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Mathematical inference of the results
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Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host
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