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Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated development
C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar, G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml, B. Pogson, PLoS One 8 (2013).

Overexpression of the auxin binding PROTEIN1 modulates PIN-dependent auxin transport in tobacco cells
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Highly adaptive liquid simulations on tetrahedral meshes
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Putting holes in holey geometry: Topology change for arbitrary surfaces
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Liquid surface tracking with error compensation
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Three functions of cadherins in cell adhesion
J.-L. Maître, C.-P.J. Heisenberg, Current Biology 23 (2013) 6–3.

Genetic hitch-hiking in spatially extended populations
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.

Formalizing and reasoning about quality
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The power of linear programming for finite-valued CSPs: A constructive characterization
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Attribute-based classification for zero-shot learning of object categories
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The supervised IBP: Neighbourhood preserving infinite latent feature models
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Stability and semiclassics in self-generated fields
L. Erdös, S. Fournais, J. Solovej, Journal of the European Mathematical Society 15 (2013) 2093–2113.

Can quantitative and population genetics help us understand evolutionary computation?
N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.

Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila
H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.

A variance decomposition approach to the analysis of genetic algorithms
T. Paixao, N.H. Barton, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 845–852.

Local eigenvalue density for general MANOVA matrices
L. Erdös, B. Farrell, Journal of Statistical Physics 152 (2013) 1003–1032.

Extending continuous maps: Polynomiality and undecidability
M. cadek, M. Krcál, J. Matousek, L. Vokínek, U. Wagner, in:, 45th Annual ACM Symposium on Theory of Computing, ACM, 2013, pp. 595–604.

The moss physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain
K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M. Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.

High-precision Taylor-Couette experiment to study subcritical transitions and the role of boundary conditions and size effects
K. Avila, B. Hof, Review of Scientific Instruments 84 (2013).

Environmental dependence of genetic constraint
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The complexity of coverage
K. Chatterjee, L. Alfaro, R. Majumdar, International Journal of Foundations of Computer Science 24 (2013) 165–185.

Nature of laminar-turbulence intermittency in shear flows
M. Avila, B. Hof, Physical Review E 87 (2013).

Elasto-inertial turbulence
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Homological reconstruction and simplification in 
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Density games
S. Novak, K. Chatterjee, M. Nowak, Journal of Theoretical Biology 334 (2013) 26–34.

Quantitative timed simulation functions and refinement metrics for real-time systems
K. Chatterjee, V. Prabhu, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, Springer, 2013, pp. 273–282.

Learning quadratic receptive fields from neural responses to natural stimuli
K. Rajan, O. Marre, G. Tkadik, Neural Computation 25 (2013) 1661–1692.

Mutations in SCO2 are associated with autosomal-dominant high-grade myopia
K. Tran Viet, C. Powell, V. Barathi, T. Klemm, S. Maurer Stroh, V. Limviphuvadh, V. Soler, C. Ho, T. Yanovitch, G. Schneider, Y. Li, E. Nading, R. Metlapally, S. Saw, L. Goh, S. Rozen, T. Young, American Journal of Human Genetics 92 (2013) 820–826.

3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y. Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner, T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) 95–04.

A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis
E. Remy, T. Cabrito, P. Baster, R. Batista, M. Teixeira, J. Friml, I. Sá Correia, P. Duque, Plant Cell 25 (2013) 901–926.

Salicylic acid interferes with clathrin-mediated endocytic protein trafficking
Y. Du, R. Tejos, M. Beck, E. Himschoot, H. Li, S. Robatzek, S. Vanneste, J. Friml, PNAS 110 (2013) 7946–7951.

Post-fire recovery of revegetated woodland communities in south-eastern Australia
M. Pickup, S. Wilson, D. Freudenberger, N. Nicholls, L. Gould, S. Hnatiuk, J. Delandre, Austral Ecology 38 (2013) 300–312.

Synthesis of memory-efficient, clock-memory free, and non-Zeno safety controllers for timed systems
K. Chatterjee, V. Prabhu, Information and Computation 228–229 (2013) 83–119.

Cell polarity and patterning by PIN trafficking through early endosomal compartments in arabidopsis thaliana
H. Tanaka, S. Kitakura, H. Rakusová, T. Uemura, M. Feraru, R. De Rycke, S. Robert, T. Kakimoto, J. Friml, PLoS Genetics 9 (2013).

The complexity of conservative valued CSPs
V. Kolmogorov, S. divný, Journal of the ACM 60 (2013).

Scale invariance at the onset of turbulence in couette flow
L. Shi, M. Avila, B. Hof, Physical Review Letters 110 (2013).

Streamwise-localized solutions at the onset of turbulence in pipe flow
M. Avila, F. Mellibovsky, N. Roland, B. Hof, Physical Review Letters 110 (2013).

Forces in tissue morphogenesis and patterning
C.-P.J. Heisenberg, Y. Bellaïche, Cell 153 (2013) 948–962.

A conduit to amplify innate immunity
C. Moussion, M.K. Sixt, Immunity 38 (2013) 853–854.

Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 105–119.

Dyrk1A is dynamically expressed on subsets of motor neurons and in the neuromuscular junction: Possible role in Down syndrome
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Interstitial dendritic cell guidance by haptotactic chemokine gradients
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The local semicircle law for a general class of random matrices
L. Erdös, A. Knowles, H. Yau, J. Yin, Electronic Journal of Probability 18 (2013) 1–58.

Root ultraviolet b-sensitive1/weak auxin response3 is essential for polar auxin transport in arabidopsis
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Assume-guarantee synthesis for digital contract signing
K. Chatterjee, V. Raman, Formal Aspects of Computing 26 (2013) 825–859.

Distinct roles of medial and lateral entorhinal cortex in spatial cognition
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Holding on and letting go: Cadherin turnover in cell intercalation
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An auxin transport mechanism restricts positive orthogravitropism in lateral roots
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Stable length estimates of tube-like shapes
H. Edelsbrunner, F. Pausinger, in:, 17th IAPR International Conference on Discrete Geometry for Computer Imagery, Springer, 2013, pp. XV–XIX.

Developmental refinement of vesicle cycling at Schaffer collateral synapses
T. Rose, P. Schönenberger, K. Jezek, T. Oertner, Neuron 77 (2013) 1109–1121.

Strategy improvement for concurrent reachability and turn based stochastic safety games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, Journal of Computer and System Sciences 79 (2013) 640–657.

The simplest maximum entropy model for collective behavior in a neural network
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A simple method for estimating the entropy of neural activity
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Optical control of ligand-gated ion channels
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Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning
D. Dupret, J. O’Neill, J.L. Csicsvari, Neuron 78 (2013) 166–180.

Mosaic analysis with double markers reveals cell type specific paternal growth dominance
S. Hippenmeyer, R. Johnson, L. Luo, Cell Reports 3 (2013) 960–967.

Optical control of metabotropic glutamate receptors
J. Levitz, C. Pantoja, B. Gaub, H.L. Janovjak, A. Reiner, A. Hoagland, D. Schoppik, B. Kane, P. Stawski, A. Schier, D. Trauner, E. Isacoff, Nature Neuroscience 16 (2013) 507–516.

Homology and robustness of level and interlevel sets
P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, Homology, Homotopy and Applications 15 (2013) 51–72.

Stimulus-dependent maximum entropy models of neural population codes
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Lethal giant larvae 2 regulates development of the ciliated organ Kupffer’s vesicle
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Lyapunov exponent and topological entropy plateaus in piecewise linear maps
V. Botella Soler, J. Oteo, J. Ros, P. Glendinning, Journal of Physics A: Mathematical and Theoretical 46 (2013).

Arabidopsis TWISTED DWAR functionally interacts with auxin exporter ABC on the root plasma membrane
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Auxin reflux between the endodermis and pericycle promotes lateral root initiation
P. Marhavý, M. Vanstraelen, B. De Rybel, D. Zhaojun, M. Bennett, T. Beeckman, E. Benková, EMBO Journal 32 (2013) 149–158.

Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin transporters during root gravitropism
C. Löfke, M. Zwiewka, I. Heilmann, M. Van Montagu, T. Teichmann, J. Friml, PNAS 110 (2013) 3627–3632.

Mathematical and Engineering Methods in Computer Science
A. Kucera, T.A. Henzinger, J. Nesetril, T. Vojnar, D. Antos, eds., Mathematical and Engineering Methods in Computer Science, Springer, 2013.

Cell adhesion mechanics of zebrafish gastrulation
J.-L. Maître, H. Berthoumieux, G. Krens, G. Salbreux, F. Julicher, E. Paluch, C.-P.J. Heisenberg, Medecine Sciences 29 (2013) 147–150.

Controllable-choice message sequence graphs
M. Chmelik, V. ehák, 7721 (2013) 118–130.

Genotypic recognition and spatial responses by rice roots
S. Fang, R. Clark, Y. Zheng, A. Iyer Pascuzzi, J. Weitz, L. Kochian, H. Edelsbrunner, H. Liao, P. Benfey, PNAS 110 (2013) 2670–2675.

Computing the M most probable modes of a graphical model
C. Chen, V. Kolmogorov, Z. Yan, D. Metaxas, C. Lampert, in:, JMLR, 2013, pp. 161–169.

3D kinetic alpha complexes and their implementation
M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77.

Coalescent simulation in continuous space
J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.

Modelling evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).

Does hybridisation influence speciation?  
N.H. Barton, Journal of Evolutionary Biology 26 (2013) 267–269.

Recombination and sex
N.H. Barton, in:, The Princeton Guide to Evolution, Princeton University Press, 2013, pp. 328–333.

Retinal metric: a stimulus distance measure derived from population neural responses
G. Tkadik, E. Granot Atedgi, R. Segev, E. Schneidman, Physical Review Letters 110 (2013).

Anthrax toxin receptor 2a controls mitotic spindle positioning
I. Castanon, L. Abrami, L. Holtzer, C.-P.J. Heisenberg, F. Van Der Goot, M. González Gaitán, Nature Cell Biology 15 (2013) 28–39.

SCF^TI AFB-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism
P. Baster, S. Robert, J. Kleine Vehn, S. Vanneste, U. Kania, W. Grunewald, B. De Rybel, T. Beeckman, J. Friml, EMBO Journal 32 (2013) 260–274.

Neurulation coordinating cell polarisation and lumen formation
J. Compagnon, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 1–3.

A counterexample to the chain rule for conditional HILL entropy, and what deniable encryption has to do with it
S. Krenn, K.Z. Pietrzak, A. Wadia, in:, A. Sahai (Ed.), Springer, 2013, pp. 23–39.

Beyond dataset bias: Multi-task unaligned shared knowledge transfer
T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.

Code aware resource management
K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, V. Raman, Formal Methods in System Design 42 (2013) 142–174.

Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions
H. Edelsbrunner, B.T. Fasy, G. Rote, Discrete &; Computational Geometry 49 (2013) 797–822.

An output sensitive algorithm for persistent homology
C. Chen, M. Kerber, Computational Geometry: Theory and Applications 46 (2013) 435–447.

Positional information, in bits
J. Dubuis, G. Tkadik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013) 16301–16308.

Kernel based learning
N. Quadrianto, C. Lampert, in:, W. Dubitzky, O. Wolkenhauer, K. Cho, H. Yokota (Eds.), Encyclopedia of Systems Biology, Springer, 2013, pp. 1069–1069.

Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M.H. Henzinger, M. Joglekar, N. Shah, Formal Methods in System Design 42 (2013) 301–327.

Source population characteristics affect heterosis following genetic rescue of fragmented plant populations
M. Pickup, D. Field, D. Rowell, A. Young, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).

Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions
D. Dickerson, D. Bilkey, Frontiers in Behavioral Neuroscience 7 (2013).

Dynamic persistence of antibiotic-stressed mycobacteria
Y. Wakamoto, N. Dhar, R.P. Chait, K. Schneider, F. Signorino Gelo, S. Leibler, J. Mckinney, Science 339 (2013) 91–95.

Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza
M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary Biology 13 (2013).

A new species of tapir from the Amazon
M. Cozzuol, C. Clozato, E. Holanda, F. Rodrigues, S. Nienow, B. De Thoisy, R.A. Fernandes Redondo, F. Santos, Journal of Mammalogy 94 (2013) 1331–1345.

Banning toxic heavy-metal catalysts from paints: Enzymatic cross-linking of alkyd resins
K. Greimel, V. Perz, K. Koren, R. Feola, A. Temel, C. Sohar, E. Herrero Acero, I. Klimant, G. Guebitz, Green Chemistry 15 (2013) 381–388.

Short blind signatures
O. Blazy, G. Fuchsbauer, D. Pointcheval, D. Vergnaud, Journal of Computer Security 21 (2013) 627–661.

Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NC, and NC: Functional implications
E. Tarazona Santos, M. Machado, W. Magalhães, R. Chen, F. Lyon, L. Burdett, A. Crenshaw, C. Fabbri, L. Pereira, L. Pinto, R.A. Fernandes Redondo, B. Sestanovich, M. Yeager, S. Chanock, Molecular Biology and Evolution 30 (2013) 2157–2167.

The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIV in arabidopsis
S. Di Rubbo, N. Irani, S. Kim, Z. Xu, A. Gadeyne, W. Dejonghe, I. Vanhoutte, G. Persiau, D. Eeckhout, S. Simon, K. Song, J. Kleine Vehn, J. Friml, G. De Jaeger, D. Van Damme, I. Hwang, E. Russinova, Plant Cell 25 (2013) 2986–2997.

Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive organ development in arabidopsis
S. Kim, Z. Xu, K. Song, D. Kim, H. Kang, I. Reichardt, E. Sohn, J. Friml, G. Juergens, I. Hwang, Plant Cell 25 (2013) 2970–2985.

Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid
A. Pbndík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham, Y. Zhang, M. Kowalczyk, M. Estelle, E. Zaeímalová, O. Novák, G. Sandberg, K. Ljung, Plant Cell 25 (2013) 3858–3870.

A map of cell typespecific auxin responses
B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe, J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).

Thymic medullar conduits-associated podoplanin promotes natural regulatory T cells
E. Fuertbauer, J. Zaujec, P. Uhrin, I. Raab, M. Weber, H. Schachner, M. Bauer, G. Schütz, B. Binder, M.K. Sixt, D. Kerjaschki, H. Stockinger, Immunology Letters 154 (2013) 31–41.