The impact of chromosomal rearrangements in speciation: From micro- to macroevolution
K. Lucek, M.D. Giménez, M. Joron, M. Rafajlovi, J.B. Searle, N. Walden, A.M. Westram, R. Faria, Cold Spring Harbor Perspectives in Biology 15 (2023).
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Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dn
K.J. Westerich, K. Tarbashevich, J. Schick, A. Gupta, M. Zhu, K. Hull, D. Romo, D. Zeuschner, M. Goudarzi, T. Gross-Thebing, E. Raz, Developmental Cell 58 (2023) 1578–1592.e5.
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Large neutral amino acid levels tune perinatal neuronal excitability and survival
L. Knaus, B. Basilico, D. Malzl, M. Gerykova Bujalkova, M. Smogavec, L.A. Schwarz, S. Gorkiewicz, N. Amberg, F. Pauler, C. Knittl-Frank, M. Tassinari, N. Maulide, T. Rülicke, J. Menche, S. Hippenmeyer, G. Novarino, Cell 186 (2023) 1950–1967.e25.
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Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli
N. Nikolic, M. Sauert, T.G. Albanese, I. Moll, BMC Research Notes 15 (2022).
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Eukaryotic gene regulation at equilibrium, or non?
B. Zoller, T. Gregor, G. Tkadik, Current Opinion in Systems Biology 31 (2022).
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DNA methylation dynamics during germline development
S. He, X. Feng, Journal of Integrative Plant Biology 64 (2022) 2240–2251.
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Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks
W.J. Nicolas, F. Fäßler, P. Dutka, F.K. Schur, G. Jensen, E. Meyerowitz, Current Biology 32 (2022) 75-2389.
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Relation between the number of peaks and the number of reciprocal sign epistatic interactions
R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
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Inversions and parallel evolution
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
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A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory
Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas, Nature Communications 13 (2022).
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The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
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Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis
J. Huang, L. Zhao, S. Malik, B.R. Gentile, V. Xiong, T. Arazi, H.A. Owen, J. Friml, D. Zhao, Nature Communications 13 (2022).
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Polygenic adaptation after a sudden change in environment
L. Hayward, G. Sella, ELife 11 (2022).
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On the nanoscale structural evolution of solid discharge products in lithium-sulfur batteries using operando scattering
C. Prehal, J.-M. von Mentlen, S. Drvarid Talian, A. Vizintin, R. Dominko, H. Amenitsch, L. Porcar, S.A. Freunberger, V. Wood, Nature Communications 13 (2022).
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Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids
S. Randriamanantsoa, A. Papargyriou, H.C. Maurer, K. Peschke, M. Schuster, G. Zecchin, K. Steiger, R. Öllinger, D. Saur, C. Scheel, R. Rad, E.B. Hannezo, M. Reichert, A.R. Bausch, Nature Communications 13 (2022).
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Muskelin regulates actin-dependent synaptic changes and intrinsic brain activity relevant to behavioral and cognitive processes
M.W. Muhia, P. YuanXiang, J. Sedlacik, J.R. Schwarz, F.F. Heisler, K.V. Gromova, E. Thies, P. Breiden, Y. Pechmann, M.R. Kreutz, M. Kneussel, Communications Biology 5 (2022).
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A feedback loop between lamellipodial extension and HGF-ERK signaling specifies leader cells during collective cell migration
N. Hino, K. Matsuda, Y. Jikko, G. Maryu, K. Sakai, R. Imamura, S. Tsukiji, K. Aoki, K. Terai, T. Hirashima, X. Trepat, M. Matsuda, Developmental Cell 57 (2022) 2290–2304.e7.
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Growthmediated negative feedback shapes quantitative antibiotic response
A. Angermayr, T.Y. Pang, G. Chevereau, K. Mitosch, M.J. Lercher, M.T. Bollenbach, Molecular Systems Biology 18 (2022).
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Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling
A.L. Sumser, M.A. Jösch, P.M. Jonas, Y. Ben Simon, ELife 11 (2022).
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Nitrate availability controls translocation of the transcription factor N for cell-type-specific reprogramming of root growth
H. Xiao, Y. Hu, Y. Wang, J. Cheng, J. Wang, G. Chen, Q. Li, S. Wang, Y. Wang, S.-S. Wang, Y. Wang, W. Xuan, Z. Li, Y. Guo, Z. Gong, J. Friml, J. Zhang, Developmental Cell 57 (2022) 2638–2651.e6.
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Assessing human iPSC-derived microglia identity and function by immunostaining, phagocytosis, calcium activity, and inflammation assay
V. Hübschmann, M. Korkut, S. Siegert, STAR Protocols 3 (2022).
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In vitro reconstitution of Escherichia coli divisome activation
P. Radler, N.S. Baranova, P.R. Dos Santos Caldas, C.M. Sommer, M.D. Lopez Pelegrin, D. Michalik, M. Loose, Nature Communications 13 (2022).
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The response of a metapopulation to a changing environment
N.H. Barton, O.O. Olusanya, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
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Structural rearrangements allow nucleic acid discrimination by type I-D Cascade
E.A. Schwartz, T.M. McBride, J.P.K. Bravo, D. Wrapp, P.C. Fineran, R.D. Fagerlund, D.W. Taylor, Nature Communications 13 (2022).
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Structural basis for broad anti-phage immunity by DISARM
J.P.K. Bravo, C. Aparicio-Maldonado, F.L. Nobrega, S.J.J. Brouns, D.W. Taylor, Nature Communications 13 (2022).
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Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
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CH haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories
C.E. Villa, C. Cheroni, C. Dotter, A. López-Tóbon, B. Oliveira, R. Sacco, A.Ç. Yahya, J. Morandell, M. Gabriele, M. Tavakoli, J. Lyudchik, C.M. Sommer, M. Gabitto, J.G. Danzl, G. Testa, G. Novarino, Cell Reports 39 (2022).
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Identification of long-lived proteins in the mitochondria reveals increased stability of the electron transport chain
S. Krishna, R. Arrojo e Drigo, J.S. Capitanio, R. Ramachandra, M. Ellisman, M. Hetzer, Developmental Cell 56 (2021) 52–2965.e9.
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Health and sustainability of glaciers in High Mountain Asia
E. Miles, M. McCarthy, A. Dehecq, M. Kneib, S. Fugger, F. Pellicciotti, Nature Communications 12 (2021).
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Morphology control in crystalline nanoparticle–polymer aggregates
T. Bian, R. Klajn, Annals of the New York Academy of Sciences 1505 (2021) 191–201.
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Two linked loci under mutation-selection balance and Muller’s ratchet
K. Khudiakova, T.Y. Neretina, A.S. Kondrashov, Journal of Theoretical Biology 524 (2021).
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Structure of the mature Rous sarcoma virus lattice reveals a role for I in the formation of the capsid hexamer
M. Obr, C.L. Ricana, N. Nikulin, J.-P.R. Feathers, M. Klanschnig, A. Thader, M.C. Johnson, V.M. Vogt, F.K. Schur, R.A. Dick, Nature Communications 12 (2021).
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Structural basis for inhibition of the AAA-ATPase Dr by diazaborine
M. Prattes, I. Grishkovskaya, V.-V. Hodirnau, I. Rössler, I. Klein, C. Hetzmannseder, G. Zisser, C.C. Gruber, K. Gruber, D. Haselbach, H. Bergler, Nature Communications 12 (2021).
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Transsynaptic modulation of presynaptic short-term plasticity in hippocampal mossy fiber synapses
D.H. Vandael, Y. Okamoto, P.M. Jonas, Nature Communications 12 (2021).
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PH regulates neuronal gene expression through the Pol II CTD reader domain SPOC
L.-M. Appel, V. Franke, M. Bruno, I. Grishkovskaya, A. Kasiliauskaite, T. Kaufmann, U.E. Schoeberl, M.G. Puchinger, S. Kostrhon, C. Ebenwaldner, M. Sebesta, E. Beltzung, K. Mechtler, G. Lin, A. Vlasova, M. Leeb, R. Pavri, A. Stark, A. Akalin, R. Stefl, C. Bernecky, K. Djinovic-Carugo, D. Slade, Nature Communications 12 (2021).
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Control of protein synthesis and memory by GluN3A-NMDA receptors through inhibition of GI/mTOR assembly
M.J. Conde-Dusman, P.N. Dey, Ó. Elía-Zudaire, L.E. Garcia Rabaneda, C. García-Lira, T. Grand, V. Briz, E.R. Velasco, R. Andero Galí, S. Niñerola, A. Barco, P. Paoletti, J.F. Wesseling, F. Gardoni, S.J. Tavalin, I. Perez-Otaño, ELife 10 (2021).
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Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster
M.O. Çoruh, A. Frank, H. Tanaka, A. Kawamoto, E. El-Mohsnawy, T. Kato, K. Namba, C. Gerle, M.M. Nowaczyk, G. Kurisu, Communications Biology 4 (2021).
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Histone  prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin
J. Choi, D.B. Lyons, D. Zilberman, ELife 10 (2021).
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Loss of Hem1 disrupts macrophage function and impacts migration, phagocytosis, and integrin-mediated adhesion
S. Stahnke, H. Döring, C. Kusch, D.J.J. de Gorter, S. Dütting, A. Guledani, I. Pleines, M. Schnoor, M.K. Sixt, R. Geffers, M. Rohde, M. Müsken, F. Kage, A. Steffen, J. Faix, B. Nieswandt, K. Rottner, T.E.B. Stradal, Current Biology 31 (2021) 2051–2064.e8.
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Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
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Reading the chromatinized genome
A.K. Michael, N.H. Thomä, Cell 184 (2021) 3599–3611.
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Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse
T.S. Balmer, C. Borges Merjane, L.O. Trussell, ELife 10 (2021).
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Liquid–liquid phase separation underpins the formation of replication factories in rotaviruses
F. Geiger, J. Acker, G. Papa, X. Wang, W.E. Arter, K.L. Saar, N.A. Erkamp, R. Qi, J.P.K. Bravo, S. Strauss, G. Krainer, O.R. Burrone, R. Jungmann, T.P. Knowles, H. Engelke, A. Borodavka, The EMBO Journal 40 (2021).
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SCOPE enables type III CRISPR-Cas diagnostics using flexible targeting and stringent CARF ribonuclease activation
J.A. Steens, Y. Zhu, D.W. Taylor, J.P.K. Bravo, S.H.P. Prinsen, C.D. Schoen, B.J.F. Keijser, M. Ossendrijver, L.M. Hofstra, S.J.J. Brouns, A. Shinkai, J. van der Oost, R.H.J. Staals, Nature Communications 12 (2021).
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Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development
J. Morandell, L.A. Schwarz, B. Basilico, S. Tasciyan, G.A. Dimchev, A. Nicolas, C.M. Sommer, C. Kreuzinger, C. Dotter, L. Knaus, Z. Dobler, E. Cacci, F.K. Schur, J.G. Danzl, G. Novarino, Nature Communications 12 (2021).
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An ESCRT-III polymerization sequence drives membrane deformation and fission
A.-K. Pfitzner, V. Mercier, X. Jiang, J. Moser von Filseck, B. Baum, A. Sari, A. Roux, Cell 182 (2020) 1140–1155.e18.
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Transcriptional and functional changes of the human microvasculature during physiological aging and Alzheimer disease
S. Bersini, R. Arrojo e Drigo, L. Huang, M.N. Shokhirev, M. Hetzer, Advanced Biosystems 4 (2020).
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Direct reprogramming of human smooth muscle and vascular endothelial cells reveals defects associated with aging and Hutchinson-Gilford progeria syndrome
S. Bersini, R. Schulte, L. Huang, H. Tsai, M. Hetzer, ELife 9 (2020).
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Nu regulates breast tumor growth by modulating cell proliferation and actin cytoskeleton remodeling
S. Bersini, N.K. Lytle, R. Schulte, L. Huang, G.M. Wahl, M. Hetzer, Life Science Alliance 3 (2020).
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The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments
H. Rampelt, I. Sucec, B. Bersch, P. Horten, I. Perschil, J.-C. Martinou, M. van der Laan, N. Wiedemann, P. Schanda, N. Pfanner, BMC Biology 18 (2020).
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Converting microwave and telecom photons with a silicon photonic nanomechanical interface
G.M. Arnold, M. Wulf, S. Barzanjeh, E. Redchenko, A.R. Rueda Sanchez, W.J. Hease, F. Hassani, J.M. Fink, Nature Communications 11 (2020).
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Oncogenic state and cell identity combinatorially dictate the susceptibility of cells within glioma development hierarchy to IGR targeting
A. Tian, B. Kang, B. Li, B. Qiu, W. Jiang, F. Shao, Q. Gao, R. Liu, C. Cai, R. Jing, W. Wang, P. Chen, Q. Liang, L. Bao, J. Man, Y. Wang, Y. Shi, J. Li, M. Yang, L. Wang, J. Zhang, S. Hippenmeyer, J. Zhu, X. Bian, Y. Wang, C. Liu, Advanced Science 7 (2020).
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Persistent and reversible solid iodine electrodeposition in nanoporous carbons
C. Prehal, H. Fitzek, G. Kothleitner, V. Presser, B. Gollas, S.A. Freunberger, Q. Abbas, Nature Communications 11 (2020).
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Cysteine oxidation and disulfide formation in the ribosomal exit tunnel
L. Schulte, J. Mao, J. Reitz, S. Sreeramulu, D. Kudlinzki, V.-V. Hodirnau, J. Meier-Credo, K. Saxena, F. Buhr, J.D. Langer, M. Blackledge, A.S. Frangakis, C. Glaubitz, H. Schwalbe, Nature Communications 11 (2020).
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Cryo-electron tomography structure of Ar/3 complex in cells reveals new insights into the branch junction
F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, W. Wan, F.K. Schur, Nature Communications 11 (2020).
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Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing
J.L. Fribourgh, A. Srivastava, C.R. Sandate, A.K. Michael, P.L. Hsu, C. Rakers, L.T. Nguyen, M.R. Torgrimson, G.C.G. Parico, S. Tripathi, N. Zheng, G.C. Lander, T. Hirota, F. Tama, C.L. Partch, ELife 9 (2020).
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Structural basis for assembly of non-canonical small subunits into type I-C Cascade
R.E. O’Brien, I.C. Santos, D. Wrapp, J.P.K. Bravo, E.A. Schwartz, J.S. Brodbelt, D.W. Taylor, Nature Communications 11 (2020).
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Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex
D.F. Gauto, L.F. Estrozi, C.D. Schwieters, G. Effantin, P. Macek, R. Sounier, A.C. Sivertsen, E. Schmidt, R. Kerfah, G. Mas, J.-P. Colletier, P. Güntert, A. Favier, G. Schoehn, P. Schanda, J. Boisbouvier, Nature Communications 10 (2019).
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Activity-controlled annealing of colloidal monolayers
S. Ramananarivo, E. Ducrot, J.A. Palacci, Nature Communications 10 (2019).
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Natural depletion of histone  in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation
S. He, M. Vickers, J. Zhang, X. Feng, ELife 8 (2019).
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Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover and germline transcription in Arabidopsis
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Selective clearance of the inner nuclear membrane protein emerin by vesicular transport during ER stress
A. Buchwalter, R. Schulte, H. Tsai, J. Capitanio, M. Hetzer, ELife 8 (2019).
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Structural basis of membrane protein chaperoning through the mitochondrial intermembrane space
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Reversible chromism of spiropyran in the cavity of a flexible coordination cage
D. Samanta, D. Galaktionova, J. Gemen, L.J.W. Shimon, Y. Diskin-Posner, L. Avram, P. Král, R. Klajn, Nature Communications 9 (2018).
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Structure and mechanism of the two-component ;1-helical pore-forming toxin YaxAB
B. Bräuning, E. Bertosin, F.M. Praetorius, C. Ihling, A. Schatt, A. Adler, K. Richter, A. Sinz, H. Dietz, M. Groll, Nature Communications 9 (2018).
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Mechanical force induces mitochondrial fission
S.C.J. Helle, Q. Feng, M.J. Aebersold, L. Hirt, R.R. Grüter, A. Vahid, A. Sirianni, S. Mostowy, J.G. Snedeker, A. Sari, T. Idema, T. Zambelli, B. Kornmann, ELife 6 (2017).
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Nucleolar expansion and elevated protein translation in premature aging
A. Buchwalter, M. Hetzer, Nature Communications 8 (2017).
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Dynamics of valence-shell electrons and nuclei probed by strong-field holography and rescattering
S.G. Walt, N. Bhargava Ram, M. Atala, N.I. Shvetsov-Shilovski, A. von Conta, D.R. Baykusheva, M. Lein, H.J. Wörner, Nature Communications 8 (2017).
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Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms
J.C. Fong, A. Rogers, A.K. Michael, N.C. Parsley, W.-C. Cornell, Y.-C. Lin, P.K. Singh, R. Hartmann, K. Drescher, E. Vinogradov, L.E. Dietrich, C.L. Partch, F.H. Yildiz, ELife 6 (2017).
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0-catenin prevents multinucleation through control of MKL-dependent RhoA activity during cytokinesis
R.A.H. van de Ven, J.S. de Groot, D. Park, R. van Domselaar, D. de Jong, K. Szuhai, E. van der Wall, O.M. Rueda, H.R. Ali, C. Caldas, P.J. van Diest, M. Hetzer, E. Sahai, P.W.B. Derksen, Nature Communications 7 (2016).
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Linking micronuclei to chromosome fragmentation
E.M. Hatch, M. Hetzer, Cell 161 (2015) 1502–1504.
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Chromothripsis
E.M. Hatch, M. Hetzer, Current Biology 25 (2015) -9.
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Observing the overall rocking motion of a protein in a crystal
P. Ma, Y. Xue, N. Coquelle, J.D. Haller, T. Yuwen, I. Ayala, O. Mikhailovskii, D. Willbold, J.-P. Colletier, N.R. Skrynnikov, P. Schanda, Nature Communications 6 (2015).
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Observation of laser-induced electronic structure in oriented polyatomic molecules
P.M. Kraus, O.I. Tolstikhin, D.R. Baykusheva, A. Rupenyan, J. Schneider, C.Z. Bisgaard, T. Morishita, F. Jensen, L.B. Madsen, H.J. Wörner, Nature Communications 6 (2015).
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Nuclear pores set the speed limit for mitosis
A. Buchwalter, M. Hetzer, Cell 156 (2014) 868–869.
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Nanoporous frameworks exhibiting multiple stimuli responsiveness
P.K. Kundu, G.L. Olsen, V. Kiss, R. Klajn, Nature Communications 5 (2014).
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Identification of long-lived proteins reveals exceptional stability of essential cellular structures
B.H. Toyama, J.N. Savas, S.K. Park, M.S. Harris, N.T. Ingolia, J.R. Yates, M. Hetzer, Cell 154 (2013) 971–982.
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Catastrophic nuclear envelope collapse in cancer cell micronuclei
E.M. Hatch, A.H. Fischer, T.J. Deerinck, M. Hetzer, Cell 154 (2013) 47–60.
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A change in nuclear pore complex composition regulates cell differentiation
M.A. D’Angelo, J.S. Gomez-Cavazos, A. Mei, D.H. Lackner, M. Hetzer, Developmental Cell 22 (2012) 446–458.
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RNP export by nuclear envelope budding
E.M. Hatch, M. Hetzer, Cell 149 (2012) 733–735.
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The nuclear envelope
M. Hetzer, Cold Spring Harbor Perspectives in Biology 2 (2010) 0539–0539.
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Chromatin-bound nuclear pore components regulate gene expression in higher eukaryotes
M. Capelson, Y. Liang, R. Schulte, W. Mair, U. Wagner, M. Hetzer, Cell 140 (2010) 372–383.
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Cell cycle-dependent differences in nuclear pore complex assembly in metazoa
C.M. Doucet, J.A. Talamas, M. Hetzer, Cell 141 (2010) 1030–1041.
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Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes
M. Hetzer, S.R. Wente, Developmental Cell 17 (2009) 606–616.
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Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells
M.A. D’Angelo, M. Raices, S.H. Panowski, M. Hetzer, Cell 136 (2009) 284–295.
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The conserved Nu7-160 complex is critical for nuclear pore complex assembly
T.C. Walther, A. Alves, H. Pickersgill, I. Loodice, M. Hetzer, V. Galy, B.B. Hülsmann, T. Köcher, M. Wilm, T. Allen, I.W. Mattaj, V. Doye, Cell 113 (2003) 195–206.
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Ran binds to chromatin by two distinct mechanisms
D. Bilbao-Cortés, M. Hetzer, G. Längst, P.B. Becker, I.W. Mattaj, Current Biology 12 (2002) 1151–1156.
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