Genetic determinants of antibiotic resistance evolution
M. Lukacisinova, Genetic Determinants of Antibiotic Resistance Evolution, Institute of Science and Technology Austria, 2018.
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Tools allowing independent visualization and genetic manipulation of Drosophila melanogaster macrophages and surrounding tissues
A. György, M. Roblek, A. Ratheesh, K. Valosková, V. Belyaeva, S. Wachner, Y. Matsubayashi, B. Sanchez Sanchez, B. Stramer, D.E. Siekhaus, : Genes, Genomes, Genetics 8 (2018) 845–857.
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Differential association of GABAB receptors with their effector ion channels in Purkinje cells
R. Luján, C. Aguado, F. Ciruela, J. Cózar, D. Kleindienst, L. De La Ossa, B. Bettler, K. Wickman, M. Watanabe, R. Shigemoto, Y. Fukazawa, Brain Structure and Function 223 (2018) 1565–1587.
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Parvalbumin+ interneurons obey unique connectivity rules and establish a powerful lateral-inhibition microcircuit in dentate gyrus
C. Espinoza Martinez, J. Guzmán, X. Zhang, P.M. Jonas, Nature Communications 9 (2018).
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Ergodic mean-payoff games for the analysis of attacks in crypto-currencies
K. Chatterjee, A.K. Goharshady, R. Ibsen-Jensen, Y. Velner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018.
LibreCat: https://research-explorer.ista.ac.at/record/66
DOI: 10.4230/LIPIcs.CONCUR.2018.11
arXiv: 1806.03108

Quantitative analysis of smart contracts
K. Chatterjee, A.K. Goharshady, Y. Velner, in:, Springer, 2018, pp. 739–767.
LibreCat: https://research-explorer.ista.ac.at/record/311
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Secure Credit Reporting on the Blockchain
A.K. Goharshady, A. Behrouz, K. Chatterjee, in:, Proceedings of the IEEE International Conference on Blockchain, IEEE, 2018, pp. 1343–1348.
LibreCat: https://research-explorer.ista.ac.at/record/6340
DOI: 10.1109/Cybermatics_2018.2018.00231
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arXiv: 1805.09104

Algorithms for algebraic path properties in concurrent systems of constant treewidth components
K. Chatterjee, R. Ibsen-Jensen, A.K. Goharshady, A. Pavlogiannis, ACM Transactions on Programming Languages and Systems 40 (2018).
LibreCat: https://research-explorer.ista.ac.at/record/6009
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arXiv: 1510.07565

Computational approaches for stochastic shortest path on succinct MDPs
K. Chatterjee, H. Fu, A.K. Goharshady, N. Okati, in:, Proceedings of the Twenty-Seventh International Joint Conference on Artificial Intelligence, IJCAI, 2018, pp. 4700–4707.
LibreCat: https://research-explorer.ista.ac.at/record/5977
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Relaminarization by steady modification of the streamwise velocity profile in a pipe
J. Kühnen, D. Scarselli, M. Schaner, B. Hof, Flow Turbulence and Combustion 100 (2018) 919–942.
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Destabilizing turbulence in pipe flow
J. Kühnen, B. Song, D. Scarselli, N.B. Budanur, M. Riedl, A. Willis, M. Avila, B. Hof, Nature Physics 14 (2018) 386–390.
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WRK is a component of the transcriptional network mediating auxin feedback on PIN polarity
T. Prat, J. Hajny, W. Grunewald, M.K. Vasileva, G. Molnar, R. Tejos, M. Schmid, M. Sauer, J. Friml, PLoS Genetics 14 (2018).
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PID/WAG-mediated phosphorylation of the Arabidopsis PIN3 auxin transporter mediates polarity switches during gravitropism
P. Grones, M.F. Abas, J. Hajny, A. Jones, S. Waidmann, J. Kleine Vehn, J. Friml, Scientific Reports 8 (2018).
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Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells
M. Hons, A. Kopf, R. Hauschild, A.F. Leithner, F.R. Gärtner, J. Abe, J. Renkawitz, J. Stein, M.K. Sixt, Nature Immunology 19 (2018) 606–616.
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Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls
L. Li, G. Krens, M. Fendrych, J. Friml, Bio-Protocol 8 (2018).
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Haploinsufficiency of the intellectual disability gene SET disturbs developmental gene expression and cognition
E. Deliu, N. Arecco, J. Morandell, C. Dotter, X. Contreras, C. Girardot, E. Käsper, A. Kozlova, K. Kishi, I. Chiaradia, K. Noh, G. Novarino, Nature Neuroscience 21 (2018) 1717–1727.
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Indirect reciprocity with private, noisy, and incomplete information
C. Hilbe, L. Schmid, J. Tkadlec, K. Chatterjee, M. Nowak, PNAS 115 (2018) 12241–12246.
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Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkadik, J.P. Bollback, C.C. Guet, Nature Ecology and Evolution 2 (2018) 1633–1643.
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Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkadik, J.P. Bollback, C.C. Guet, (2018).
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Tetrode recording from the hippocampus of behaving mice coupled with four-point-irradiation closed-loop optogenetics: A technique to study the contribution of Hippocampal SWR events to learning
D.K. Rangel Guerrero, J.G. Donnett, J.L. Csicsvari, K. Kovács, ENeuro 5 (2018).
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Viewpoint: Microwave quantum states beat the heat
J.M. Fink, Physics 10 (2017).
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A new proof rule for almost-sure termination
A. Mciver, C. Morgan, B.L. Kaminski, J.P. Katoen, Proceedings of the ACM on Programming Languages 2 (2017).
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arXiv: 1711.03588

Cumulative space in black-white pebbling and resolution
J.F. Alwen, S. De Rezende, J. Nordstrom, M. Vinyals, in:, C. Papadimitriou (Ed.), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017, p. 38:1-38-21.
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Existence of traveling waves for the generalized F–KPP equation
R. Kollár, S. Novak, Bulletin of Mathematical Biology 79 (2017) 525–559.
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Unstable manifolds of relative periodic orbits in the symmetry reduced state space of the Kuramoto–Sivashinsky system
N.B. Budanur, P. Cvitanovi, Journal of Statistical Physics 167 (2017) 636–655.
LibreCat: https://research-explorer.ista.ac.at/record/1211
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Hanani-Tutte for radial planarity
R. Fulek, M. Pelsmajer, M. Schaefer, Journal of Graph Algorithms and Applications 21 (2017) 135–154.
LibreCat: https://research-explorer.ista.ac.at/record/1113
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arXiv: 1608.08662

Ensembles of bidirectional kinesin Cin8 produce additive forces in both directions of movement
T. Fallesen, J. Roostalu, C.F. Düllberg, G. Pruessner, T. Surrey, Biophysical Journal 113 (2017) 2055–2067.
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Improved algorithms for parity and Streett objectives
K. Chatterjee, M.H. Henzinger, V. Loitzenbauer, Logical Methods in Computer Science 13 (2017).
LibreCat: https://research-explorer.ista.ac.at/record/464
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arXiv: 1410.0833

Water wave packets
S. Jeschke, C. Wojtan, ACM Transactions on Graphics 36 (2017).
LibreCat: https://research-explorer.ista.ac.at/record/470
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Faster statistical model checking for unbounded temporal properties
P. Daca, T.A. Henzinger, J. Kretinsky, T. Petrov, ACM Transactions on Computational Logic (TOCL) 18 (2017).
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Planar matchings for weighted straight skeletons
T. Biedl, S. Huber, P. Palfrader, International Journal of Computational Geometry and Applications 26 (2017) 211–229.
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Bogoliubov correction to the mean-field dynamics of interacting bosons
P. Nam, M.M. Napiórkowski, Advances in Theoretical and Mathematical Physics 21 (2017) 683–738.
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Universality for a class of random band matrices
P. Bourgade, L. Erdös, H. Yau, J. Yin, Advances in Theoretical and Mathematical Physics 21 (2017) 739–800.
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Activity dependent feedback inhibition may maintain head direction signals in mouse presubiculum
J. Simonnet, M. Nassar, F. Stella, I. Cohen, B. Mathon, C.N. Boccara, R. Miles, D. Fricker, Nature Communications 8 (2017).
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Clarifying the supercomplex: The higher-order organization of the mitochondrial electron transport chain
J.A. Letts, L.A. Sazanov, Nature Structural and Molecular Biology 24 (2017) 800–808.
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Couette-Poiseuille flow experiment with zero mean advection velocity: Subcritical transition to turbulence
L. Klotz, G.M. Lemoult, I. Frontczak, L. Tuckerman, J. Wesfreid, Physical Review Fluids 2 (2017).
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Higson compactification and dimension raising
K. Austin, Z. Virk, Topology and Its Applications 215 (2017) 45–57.
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Finding non-orientable surfaces in 3-Manifolds
B. Burton, A.N. de Mesmay, U. Wagner, Discrete &; Computational Geometry 58 (2017) 871–888.
LibreCat: https://research-explorer.ista.ac.at/record/534
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arXiv: 1602.07907

Grünlicht-induzierte Rezeptorinaktivierung durch Cobalamin-bindende Domänen
S. Kainrath, M. Stadler, E. Gschaider-Reichhart, M. Distel, H.L. Janovjak, Angewandte Chemie 129 (2017) 4679–4682.
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Characterization of host proteins interacting with the lymphocytic choriomeningitis virus L protein
K. Khamina, A. Lercher, M. Caldera, C. Schliehe, B. Vilagos, M. Sahin, L. Kosack, A. Bhattacharya, P. Májek, A. Stukalov, R. Sacco, L. James, D. Pinschewer, K. Bennett, J. Menche, A. Bergthaler, PLoS Pathogens 13 (2017).
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Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Ketínská, J. Kretinsky, Logical Methods in Computer Science 13 (2017).
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Nested weighted automata
K. Chatterjee, T.A. Henzinger, J. Otop, ACM Transactions on Computational Logic (TOCL) 18 (2017).
LibreCat: https://research-explorer.ista.ac.at/record/467
DOI: 10.1145/3152769
arXiv: 1606.03598

Edit distance for pushdown automata
K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, Logical Methods in Computer Science 13 (2017).
LibreCat: https://research-explorer.ista.ac.at/record/465
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Amplification on undirected population structures: Comets beat stars
A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Scientific Reports 7 (2017).
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Optimal Dyck reachability for data-dependence and Alias analysis
K. Chatterjee, B. Choudhary, A. Pavlogiannis, Proceedings of the ACM on Programming Languages 2 (2017).
LibreCat: https://research-explorer.ista.ac.at/record/10416
DOI: 10.1145/3158118
arXiv: 1910.00241

Optimal Dyck reachability for data-dependence and alias analysis
K. Chatterjee, B. Choudhary, A. Pavlogiannis, Optimal Dyck Reachability for Data-Dependence and Alias Analysis, IST Austria, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/5455
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Implementing the institutional data repository IST DataRep
B. Petritsch, Implementing the Institutional Data Repository IST DataRep, IST Austria, 2017.
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Data-centric dynamic partial order reduction
M. Chalupa, K. Chatterjee, A. Pavlogiannis, N. Sinha, K. Vaidya, Proceedings of the ACM on Programming Languages 2 (2017).
LibreCat: https://research-explorer.ista.ac.at/record/10417
DOI: 10.1145/3158119
arXiv: 1610.01188

Data-centric dynamic partial order reduction
M. Chalupa, K. Chatterjee, A. Pavlogiannis, N. Sinha, K. Vaidya, Data-Centric Dynamic Partial Order Reduction, IST Austria, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/5456
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Faster Monte Carlo algorithms for fixation probability of the Moran process on undirected graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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Faster algorithms for mean-payoff parity games
K. Chatterjee, M.H. Henzinger, A. Svozil, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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Strategy complexity of concurrent safety games
K. Chatterjee, K. Hansen, R. Ibsen-Jensen, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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On stochastic differential equations with arbitrarily slow convergence rates for strong approximation in two space dimensions
M. Gerencser, A. Jentzen, D. Salimova, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 473 (2017).
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Persistence of zero sets
P. Franek, M. Krcál, Homology, Homotopy and Applications 19 (2017) 313–342.
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Regulatory network structure determines patterns of intermolecular epistasis
M. Lagator, S. Sarikas, H. Acar, J.P. Bollback, C.C. Guet, ELife 6 (2017).
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Cytokinesis in vertebrate cells initiates by contraction of an equatorial actomyosin network composed of randomly oriented filaments
F. Spira, S. Cuylen Haering, S. Mehta, M. Samwer, A. Reversat, A. Verma, R. Oldenbourg, M.K. Sixt, D. Gerlich, ELife 6 (2017).
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Control of endogenous auxin levels in plant root development
D. Olatunji, D. Geelen, I. Verstraeten, International Journal of Molecular Sciences 18 (2017).
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Experimental evidence for Wigner's tunneling time
N. Camus, E. Yakaboylu, L. Fechner, M. Klaiber, M. Laux, Y. Mi, K. Hatsagortsyan, T. Pfeifer, C. Keitel, R. Moshammer, in:, American Physical Society, 2017.
LibreCat: https://research-explorer.ista.ac.at/record/313
DOI: 10.1088/1742-6596/999/1/012004
arXiv: 1611.03701

Experimental evidence for quantum tunneling time
N. Camus, E. Yakaboylu, L. Fechner, M. Klaiber, M. Laux, Y. Mi, K.Z. Hatsagortsyan, T. Pfeifer, C.H. Keitel, R. Moshammer, Physical Review Letters 119 (2017).
LibreCat: https://research-explorer.ista.ac.at/record/6013
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arXiv: 1611.03701

Position based cryptography and multiparty communication complexity
J. Brody, S. Dziembowski, S. Faust, K.Z. Pietrzak, in:, Y. Kalai, L. Reyzin (Eds.), Springer, 2017, pp. 56–81.
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Molecular impurities interacting with a many-particle environment: From ultracold gases to helium nanodroplets
M. Lemeshko, R. Schmidt, in:, O. Dulieu, A. Osterwalder (Eds.), Cold Chemistry: Molecular Scattering and Reactivity Near Absolute Zero , The Royal Society of Chemistry, 2017, pp. 444–495.
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Moderately hard functions: Definition, instantiations, and applications
J.F. Alwen, B. Tackmann, in:, Y. Kalai, L. Reyzin (Eds.), Springer, 2017, pp. 493–526.
LibreCat: https://research-explorer.ista.ac.at/record/609
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On generalized Heawood inequalities for manifolds: A van Kampen–Flores type nonembeddability result
X. Goaoc, I. Mabillard, P. Paták, Z. Patakova, M. Tancer, U. Wagner, Israel Journal of Mathematics 222 (2017) 841–866.
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Shaping bacterial population behavior through computer interfaced control of individual cells
R.P. Chait, J. Ruess, T. Bergmiller, G. Tkadik, C.C. Guet, Nature Communications 8 (2017).
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Universality for random matrix flows with time dependent density
L. Erdös, K. Schnelli, Annales de l’institut Henri Poincare (B) Probability and Statistics 53 (2017) 1606–1656.
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The infinitesimal model: Definition derivation and implications
N.H. Barton, A. Etheridge, A. Véber, Theoretical Population Biology 118 (2017) 50–73.
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The cost of exactness in quantitative reachability
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, L. Aceto, G. Bacci, A. Ingólfsdóttir, A. Legay, R. Mardare (Eds.), Models, Algorithms, Logics and Tools, Springer, 2017, pp. 367–381.
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MazF activation promotes translational heterogeneity of the grcA mRNA in Escherichia coli populations
N. Nikolic, Z. Didara, I. Moll, PeerJ 2017 (2017).
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Automated recurrence analysis for almost linear expected runtime bounds
K. Chatterjee, H. Fu, A. Murhekar, in:, R. Majumdar, V. Kundak (Eds.), Springer, 2017, pp. 118–139.
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Biosignals standards and FHIR: The way to go
S. Sauermann, V. David, A. Schlögl, R. Egelkraut, M. Frohner, B. Pohn, P. Urbauer, A. Mense, in:, IOS Press, 2017, pp. 356–362.
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A note on 2D focusing many boson systems
M. Lewin, P. Nam, N. Rougerie, Proceedings of the American Mathematical Society 145 (2017) 2441–2454.
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Scrypt is maximally memory hard
J.F. Alwen, B. Chen, K.Z. Pietrzak, L. Reyzin, S. Tessaro, in:, J.-S. Coron, J. Buus Nielsen (Eds.), Springer, 2017, pp. 33–62.
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On the quantitative semantics of regular expressions over real-valued signals
A. Bakhirkin, T. Ferrere, O. Maler, D. Ulus, in:, A. Abate, G. Geeraerts (Eds.), Springer, 2017, pp. 189–206.
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Depth-robust graphs and their cumulative memory complexity
J.F. Alwen, J. Blocki, K.Z. Pietrzak, in:, J.-S. Coron, J. Buus Nielsen (Eds.), Springer, 2017, pp. 3–32.
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Synchronizing the asynchronous
T.A. Henzinger, B. Kragl, S. Qadeer, Synchronizing the Asynchronous, IST Austria, 2017.
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Localization errors in solving stochastic partial differential equations in the whole space
M. Gerencser, I. Gyöngy, Mathematics of Computation 86 (2017) 2373–2397.
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Value iteration for long run average reward in markov decision processes
P. Ashok, K. Chatterjee, P. Daca, J. Kretinsky, T. Meggendorfer, in:, R. Majumdar, V. Kundak (Eds.), Springer, 2017, pp. 201–221.
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The complexity of general-valued CSPs
V. Kolmogorov, A. Krokhin, M. Rolinek, SIAM Journal on Computing 46 (2017) 1087–1110.
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A novel convex relaxation for non binary discrete tomography
J. Kuske, P. Swoboda, S. Petra, in:, F. Lauze, Y. Dong, A. Bjorholm Dahl (Eds.), Springer, 2017, pp. 235–246.
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On the complexity of breaking pseudoentropy
M. Skórski, in:, G. Jäger, S. Steila (Eds.), Springer, 2017, pp. 600–613.
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A cryptographic view of regularity lemmas: Simpler unified proofs and refined bounds
M. Skórski, in:, G. Jäger, S. Steila (Eds.), Springer, 2017, pp. 586–599.
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Improved set-based symbolic algorithms for parity games
K. Chatterjee, W. Dvorák, M.H. Henzinger, V. Loitzenbauer, in:, Schloss Dagstuhl -Leibniz-Zentrum fuer Informatik, 2017.
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Embedding graphs into embedded graphs
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Limited heterogeneity of known driver gene mutations among the metastases of individual patients with pancreatic cancer
A. Makohon Moore, M. Zhang, J. Reiter, I. Boei, B. Allen, D. Kundu, K. Chatterjee, F. Wong, Y. Jiao, Z. Kohutek, J. Hong, M. Attiyeh, B. Javier, L. Wood, R. Hruban, M. Nowak, N. Papadopoulos, K. Kinzler, B. Vogelstein, C. Iacobuzio Donahue, Nature Genetics 49 (2017) 358–366.
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Practical graphs for optimal side-channel resistant memory-hard functions
J.F. Alwen, J. Blocki, B. Harsha, in:, Proceedings of the 2017 ACM SIGSAC Conference on Computer and Communications Security, ACM Press, 2017, pp. 1001–1017.
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Creating to understand – developmental biology meets engineering in Paris
A. Kicheva, N. Rivron, Development 144 (2017) 733–736.
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On the complexity of estimating Rènyi divergences
M. Skórski, in:, 2017 IEEE International Symposium on Information Theory (ISIT), IEEE, 2017.
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Bacterial flagella grow through an injection diffusion mechanism
T. Renault, A. Abraham, T. Bergmiller, G. Paradis, S. Rainville, E. Charpentier, C.C. Guet, Y. Tu, K. Namba, J. Keener, T. Minamino, M. Erhardt, ELife 6 (2017).
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Auxin response cell autonomously controls ground tissue initiation in the early arabidopsis embryo
B. Möller, C. Ten Hove, D. Xiang, N. Williams, L. López, S. Yoshida, M. Smit, R. Datla, D. Weijers, PNAS 114 (2017) 33–39.
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Self organized behavior generation for musculoskeletal robots
R. Der, G.S. Martius, Frontiers in Neurorobotics 11 (2017).
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FMNL formins boost lamellipodial force generation
F. Kage, M. Winterhoff, V. Dimchev, J. Müller, T. Thalheim, A. Freise, S. Brühmann, J. Kollasser, J. Block, G.A. Dimchev, M. Geyer, H. Schnittler, C. Brakebusch, T. Stradal, M. Carlier, M.K. Sixt, J. Käs, J. Faix, K. Rottner, Nature Communications 8 (2017).
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Steady state EB cap size fluctuations are determined by stochastic microtubule growth and maturation
J. Rickman, C.F. Düllberg, N. Cade, L. Griffin, T. Surrey, PNAS 114 (2017) 3427–3432.
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Hydrodynamic turbulence in quasi Keplerian rotating flows
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Safety verification of nonlinear hybrid systems based on invariant clusters
H. Kong, S. Bogomolov, C. Schilling, Y. Jiang, T.A. Henzinger, in:, Proceedings of the 20th International Conference on Hybrid Systems, ACM, 2017, pp. 163–172.
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Multiple roles of filopodial dynamics in particle capture and phagocytosis and phenotypes of Cd and Myo10 deletion
M. Horsthemke, A. Bachg, K. Groll, S. Moyzio, B. Müther, S. Hemkemeyer, R. Wedlich Söldner, M.K. Sixt, S. Tacke, M. Bähler, P. Hanley, Journal of Biological Chemistry 292 (2017) 7258–7273.
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EXO70 is a key regulatory factor for optimal tip growth of pollen
L. Synek, N. Vukasinovi, I. Kulich, M. Hála, K. Aldorfová, M. Fendrych, V. dárský, Plant Physiology 174 (2017) 223–240.
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Memory-n strategies of direct reciprocity
C. Hilbe, V. Martinez, K. Chatterjee, M. Nowak, PNAS 114 (2017) 4715–4720.
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Interactive paper tearing
C. Schreck, D. Rohmer, S. Hahmann, Computer Graphics Forum 36 (2017) 95–106.
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Locally triggered release of the chemokine CCL21 promotes dendritic cell transmigration across lymphatic endothelia
K. Vaahtomeri, M. Brown, R. Hauschild, I. de Vries, A.F. Leithner, M. Mehling, W. Kaufmann, M.K. Sixt, Cell Reports 19 (2017) 902–909.
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The INO80 complex removes A.Z to promote presynaptic filament formation during homologous recombination
C. Lademann, J. Renkawitz, B. Pfander, S. Jentsch, Cell Reports 19 (2017) 1294–1303.
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