Positional information, in bits
J. Dubuis, G. Tkadik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013) 16301–16308.

Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M.H. Henzinger, M. Joglekar, N. Shah, Formal Methods in System Design 42 (2013) 301–327.

Source population characteristics affect heterosis following genetic rescue of fragmented plant populations
M. Pickup, D. Field, D. Rowell, A. Young, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).

Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions
D. Dickerson, D. Bilkey, Frontiers in Behavioral Neuroscience 7 (2013).

Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza
M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary Biology 13 (2013).

A new species of tapir from the Amazon
M. Cozzuol, C. Clozato, E. Holanda, F. Rodrigues, S. Nienow, B. De Thoisy, R.A. Fernandes Redondo, F. Santos, Journal of Mammalogy 94 (2013) 1331–1345.

Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NC, and NC: Functional implications
E. Tarazona Santos, M. Machado, W. Magalhães, R. Chen, F. Lyon, L. Burdett, A. Crenshaw, C. Fabbri, L. Pereira, L. Pinto, R.A. Fernandes Redondo, B. Sestanovich, M. Yeager, S. Chanock, Molecular Biology and Evolution 30 (2013) 2157–2167.

The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIV in arabidopsis
S. Di Rubbo, N. Irani, S. Kim, Z. Xu, A. Gadeyne, W. Dejonghe, I. Vanhoutte, G. Persiau, D. Eeckhout, S. Simon, K. Song, J. Kleine Vehn, J. Friml, G. De Jaeger, D. Van Damme, I. Hwang, E. Russinova, Plant Cell 25 (2013) 2986–2997.

Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive organ development in arabidopsis
S. Kim, Z. Xu, K. Song, D. Kim, H. Kang, I. Reichardt, E. Sohn, J. Friml, G. Juergens, I. Hwang, Plant Cell 25 (2013) 2970–2985.

Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid
A. Pbndík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham, Y. Zhang, M. Kowalczyk, M. Estelle, E. Zaeímalová, O. Novák, G. Sandberg, K. Ljung, Plant Cell 25 (2013) 3858–3870.

A map of cell typespecific auxin responses
B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe, J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).

Looking at mean-payoff and total-payoff through windows
K. Chatterjee, L. Doyen, M. Randour, J. Raskin, 8172 (2013) 118–132.

TTP: Tool for Tumor Progression
J. Reiter, I. Bozic, K. Chatterjee, M. Nowak, TTP: Tool for Tumor Progression, IST Austria, 2013.

What is decidable about partially observable Markov decision processes with omega-regular objectives
K. Chatterjee, M. Chmelik, M. Tracol, 23 (2013) 165–180.

Qualitative analysis of concurrent mean-payoff games
K. Chatterjee, R. Ibsen-Jensen, Qualitative Analysis of Concurrent Mean-Payoff Games, IST Austria, 2013.

How free is your linearizable concurrent data structure?
T.A. Henzinger, A. Sezgin, How Free Is Your Linearizable Concurrent Data Structure?, IST Austria, 2013.

What is decidable about partially observable Markov decision processes with <9-regular objectives
K. Chatterjee, M. Chmelik, M. Tracol, What Is Decidable about Partially Observable Markov Decision Processes with <9-Regular Objectives, IST Austria, 2013.

The complexity of ergodic games
K. Chatterjee, R. Ibsen-Jensen, The Complexity of Ergodic Games, IST Austria, 2013.

Initiatives and projects related to RD
J. Porsche, Initiatives and Projects Related to RD, IST Austria, 2013.

Perfect-information stochastic mean-payoff parity games
K. Chatterjee, L. Doyen, H. Gimbert, Y. Oualhadj, Perfect-Information Stochastic Mean-Payoff Parity Games, IST Austria, 2013.

Edit distance for timed automata
K. Chatterjee, R. Ibsen-Jensen, R. Majumdar, Edit Distance for Timed Automata, IST Austria, 2013.

Distributed synthesis for LTL Fragments
K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, Distributed Synthesis for LTL Fragments, IST Austria, 2013.

The complexity of partial-observation stochastic parity games with finite-memory strategies
K. Chatterjee, L. Doyen, S. Nain, M. Vardi, The Complexity of Partial-Observation Stochastic Parity Games with Finite-Memory Strategies, IST Austria, 2013.

Technical requirements and features
J. Porsche, Technical Requirements and Features, IST Austria, 2013.

Automatic generation of alternative starting positions for traditional board games
U. Ahmed, K. Chatterjee, S. Gulwani, Automatic Generation of Alternative Starting Positions for Traditional Board Games, IST Austria, 2013.

From model checking to model measuring
T.A. Henzinger, J. Otop, 8052 (2013) 273–287.

Replacing competition with cooperation to achieve scalable lock-free FIFO queues 
T.A. Henzinger, H. Payer, A. Sezgin, Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues , IST Austria, 2013.

Hyperplane separation technique for multidimensional mean-payoff games
K. Chatterjee, Y. Velner, 8052 (2013) 500–515.

Cytokinin cross talking during biotic and abiotic stress responses
J. O’Brien, E. Benková, Frontiers in Plant Science 4 (2013).

Systems approaches to study root architecture dynamics
C. Cuesta, K.T. Wabnik, E. Benková, Frontiers in Plant Science 4 (2013).

Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies
S. Tragust, L.V. Ugelvig, M. Chapuisat, J. Heinze, S. Cremer, BMC Evolutionary Biology 13 (2013).

Transformation of stimulus correlations by the retina
K. Simmons, J. Prentice, G. Tkadik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, PLoS Computational Biology 9 (2013).

Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies
J. Hearn, G. Stone, N.H. Barton, K. Lohse, L. Bunnefeld, (2013).

Statistical thermodynamics of natural images
G. Stephens, T. Mora, G. Tkadik, W. Bialek, Physical Review Letters 110 (2013).

Automatic Linearizability Proofs of Concurrent Objects with Cooperating Updates
C. Dragoi, A. Gupta, T.A. Henzinger, in:, Computer Aided Verification, Springer Berlin Heidelberg, Berlin, Heidelberg, 2013, pp. 174–190.

Analysis of dynamic message passing programs
D. Zufferey, Analysis of Dynamic Message Passing Programs, Institute of Science and Technology Austria, 2013.

Structural Counter Abstraction
K. Bansal, E. Koskinen, T. Wies, D. Zufferey, 7795 (2013) 62–77.

Forgiver triumphs in alternating prisoner's dilemma 
B. Zagorsky, J. Reiter, K. Chatterjee, M. Nowak, PLoS One 8 (2013).

The effect of one additional driver mutation on tumor progression
J. Reiter, I. Boei, B. Allen, K. Chatterjee, M. Nowak, Evolutionary Applications 6 (2013) 34–45.

Evolutionary dynamics of cancer in response to targeted combination therapy
I. Boei, J. Reiter, B. Allen, T. Antal, K. Chatterjee, P. Shah, Y. Moon, A. Yaqubie, N. Kelly, D. Le, E. Lipson, P. Chapman, L. Diaz, B. Vogelstein, M. Nowak, ELife 2 (2013).

TTP: Tool for tumor progression
J. Reiter, I. Boei, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.

Efficient synthesis for concurrency by semantics-preserving transformations
P. Cerny, T.A. Henzinger, A. Radhakrishna, L. Ryzhyk, T. Tarrach, in:, Springer, 2013, pp. 951–967.

Trading performance for stability in Markov decision processes
T. Brázdil, K. Chatterjee, V. Forejt, A. Kudera, in:, 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–340.

Inference algorithms for pattern-based CRFs on sequence data
R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, ML Research Press, 2013, pp. 145–153.

ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip
E. Remy, P. Baster, J. Friml, P. Duque, Plant Signaling &; Behavior 8 (2013).

Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection
D. Refardt, T. Bergmiller, R. Kümmerli, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).

Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection
D. Refardt, T. Bergmiller, R. Kümmerli, (2013).

Proofs of Space
S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, Proofs of Space, IST Austria, 2013.

Conditional model checking: A technique to pass information between verifiers
D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012.

Practical leakage-resilient symmetric cryptography
S. Faust, K.Z. Pietrzak, J. Schipper, in:,  Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232.

Lapin: An efficient authentication protocol based on ring-LPN
S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:,  Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365.

A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors
H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.

Absence of bound states implies non-negativity of the scattering length
R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.

A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.

Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–473.

Evolutionary game dynamics in populations with different learners
K. Chatterjee, D. Zufferey, M. Nowak, Journal of Theoretical Biology 301 (2012) 161–173.

On the configuration space of Steiner minimal trees
H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.

Approximate determinization of quantitative automata
U. Boker, T.A. Henzinger, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 362–373.

The adaptive topology of a digital image
H. Edelsbrunner, O. Symonova, in:, IEEE, 2012, pp. 41–48.

Interface Simulation Distances
P. Cerny, M. Chmelik, T.A. Henzinger, A. Radhakrishna, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, 2012, pp. 29–42.

Towards minimizing k-submodular functions
A. Huber, V. Kolmogorov, in:, Springer, 2012, pp. 451–462.

Generalized sequential tree-reweighted message passing
V. Kolmogorov, T. Schoenemann, ArXiv (2012).

Full proof cryptography: Verifiable compilation of efficient zero-knowledge protocols
J. Almeida, M. Barbosa, E. Bangerter, G. Barthe, S. Krenn, S. Béguelin, in:, Proceedings of the 2012 ACM Conference on Computer and Communications Security, ACM, 2012, pp. 488–500.

Finite automata with time delay blocks
K. Chatterjee, T.A. Henzinger, V. Prabhu, in:, Roceedings of the Tenth ACM International Conference on Embedded Software, ACM, 2012, pp. 43–52.

Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions
N. Hadizadeh Yazdi, C.C. Guet, R. Johnson, J. Marko, Molecular Microbiology 86 (2012) 1318–1333.

On the optimality of functionals over triangulations of Delaunay sets
N. Dolbilin, H. Edelsbrunner, O. Musin, Russian Mathematical Surveys 67 (2012) 781–783.

MicroRNAs associated with the different human Argonaute proteins
A. Dueck, C. Ziegler, A. Eichner, E. Berezikov, G. Meister, Nucleic Acids Research 40 (2012) 9850–9862.

Equivalence of games with probabilistic uncertainty and partial observation games
K. Chatterjee, M. Chmelik, R. Majumdar, in:, Springer, 2012, pp. 385–399.

A deconvolution based method with high sensitivity and temporal resolution for detection of spontaneous synaptic currents in vitro and in vivo
A. Pernia-Andrade, S. Goswami, Y. Stickler, U. Fröbe, A. Schlögl, P.M. Jonas, Biophysical Journal 103 (2012) 1429–1439.

Hippocampal place cells can encode multiple trial-dependent features through rate remapping
K. Allen, J.N. Rawlins, D. Bannerman, J.L. Csicsvari, Journal of Neuroscience 32 (2012) 14752–14766.

Geometry of maximum likelihood estimation in Gaussian graphical models
C. Uhler, Annals of Statistics 40 (2012) 238–261.

The dynamics of male-male competition in Cardiocondyla obscurior ants
S. Cremer, M. Suefuji, A. Schrempf, J. Heinze, BMC Ecology 12 (2012).

A novel approach for choosing summary statistics in approximate Bayesian computation
S. Aeschbacher, M. Beaumont, A. Futschik, Genetics 192 (2012) 1027–1047.

Kontext Open Access: Creative Commons
P. Danowski, Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen &; Bibliothekare 65 (2012) 200–212.

Commitments and efficient zero knowledge proofs from learning parity with noise
A. Jain, S. Krenn, K.Z. Pietrzak, A. Tentes, in:, X. Wang, K. Sako (Eds.), Springer, 2012, pp. 663–680.

Miniature IPSCs in hippocampal granule cells are triggered by voltage-gated Ca^(2+) channels via microdomain coupling
S. Goswami, I. Bucurenciu, P.M. Jonas, Journal of Neuroscience 32 (2012) 14294–14304.

Controlling liquids using meshes
K. Raveendran, N. Thuerey, C. Wojtan, G. Turk, in:, Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation, ACM, 2012, pp. 255–264.

Tracking surfaces with evolving topology
M. Bojsen-Hansen, H. Li, C. Wojtan, ACM Transactions on Graphics 31 (2012).

Coactivation of multiple tightly coupled calcium channels triggers spontaneous release of GABA
C. Williams, W. Chen, C. Lee, D. Yaeger, N. Vyleta, S. Smith, Nature Neuroscience 15 (2012) 1195–1197.

Fano 3 folds in codimension 4 Tom and Jerry Part I
G. Brown, M. Kerber, M. Reid, Compositio Mathematica 148 (2012) 1171–1194.

Minimizing a sum of submodular functions
V. Kolmogorov, Discrete Applied Mathematics 160 (2012) 2246–2258.

Limits to the rate of adaptive substitution in sexual populations
D. Weissman, N.H. Barton, PLoS Genetics 8 (2012).

Patterns of evolutionary conservation of essential genes correlate with their compensability
T. Bergmiller, M. Ackermann, O. Silander, PLoS Genetics 8 (2012).

Efficient controller synthesis for consumption games with multiple resource types
B. Brázdil, K. Chatterjee, A. Kudera, P. Novotný, in:, Springer, 2012, pp. 23–38.

Alexander duality for functions: The persistent behavior of land and water and shore
H. Edelsbrunner, M. Kerber, in:, Proceedings of the Twenty-Eighth Annual Symposium on Computational Geometry , ACM, 2012, pp. 249–258.

Suppression of ribosomal function triggers innate immune signaling through activation of the NLR inflammasome
M. Vyleta, J. Wong, B. Magun, PLoS One 7 (2012).

Parametric identification of temporal properties
E. Asarin, A. Donzé, O. Maler, D. Nickovic, in:, Springer, 2012, pp. 147–160.

Amino acid fermentation at the origin of the genetic code
H. de Vladar, Biology Direct 7 (2012).

Synthesizing protocols for digital contract signing
K. Chatterjee, V. Raman, in:, Springer, 2012, pp. 152–168.

Games and Markov decision processes with mean payoff parity and energy parity objectives
K. Chatterjee, L. Doyen, in:, Springer, 2012, pp. 37–46.

Dual complexes of cubical subdivisions of dn
H. Edelsbrunner, M. Kerber, Discrete &; Computational Geometry 47 (2012) 393–414.

Message authentication, revisited
Y. Dodis, K.Z. Pietrzak, E. Kiltz, D. Wichs, in:, Springer, 2012, pp. 355–374.

Subspace LWE
K.Z. Pietrzak, in:, Springer, 2012, pp. 548–563.

Nanodomain coupling between Ca(2+) channels and sensors of exocytosis at fast mammalian synapses
E. Eggermann, I. Bucurenciu, S. Goswami, P.M. Jonas, Nature Reviews Neuroscience 13 (2012) 7–21.

Deconstructing approximate offsets
E. Berberich, D. Halperin, M. Kerber, R. Pogalnikova, Discrete &; Computational Geometry 48 (2012) 964–989.

A worst case bound for topology computation of algebraic curves
M. Kerber, M. Sagraloff,  Journal of Symbolic Computation 47 (2012) 239–258.

A survey of stochastic <9 regular games
K. Chatterjee, T.A. Henzinger, Journal of Computer and System Sciences 78 (2012) 394–413.

A survey of partial-observation stochastic parity games
K. Chatterjee, L. Doyen, T.A. Henzinger, Formal Methods in System Design 43 (2012) 268–284.

Augmented attribute representations
V. Sharmanska, N. Quadrianto, C. Lampert, in:, Springer, 2012, pp. 242–255.

Annotating simplices with a homology basis and its applications
O. Busaryev, S. Cabello, C. Chen, T. Dey, Y. Wang, in:, Springer, 2012, pp. 189–200.