Estimating mutual information and multi-information in large networks
N. Slonim, G. Atwal, G. Tkadik, W. Bialek, ArXiv (2005) 1–11.

Theoretical models of selection and mutationon quantitative traits
T. Johnson, N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360 (2005) 1411–1425.

Signal propagation and logic gating in networks of integrate-and-fire neurons
T.P. Vogels, L.F. Abbott, Journal of Neuroscience 25 (2005) 10786–10795.

DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).

Algorithmic challenges in web search engines
M.H. Henzinger, Internet Mathematics 1 (2004) 115–123.

Extracting knowledge from the World Wide Web
M.H. Henzinger, S. Lawrence, Proceedings of the National Academy of Sciences 101 (2004) 5186–5191.

Hodge cohomology of gravitational instantons
T. Hausel, E. Hunsicker, R. Mazzeo, Duke Mathematical Journal 122 (2004) 485–548.

Generators for the cohomology ring of the moduli space of rank 2 higgs bundles
T. Hausel, M. Thaddeus, Proceedings of the London Mathematical Society 88 (2004) 632–658.

One-dimensional behavior of dilute, trapped Bose gases
É. Lieb, R. Seiringer, J. Yngvason, Communications in Mathematical Physics 244 (2004) 347–393.

 Equivalent forms of the Bessis-Moussa-Villani conjecture
É. Lieb, R. Seiringer, Journal of Statistical Physics 115 (2004) 185–190.

Bose-Einstein quantum phase transition in an optical lattice model
M. Aizenman, É. Lieb, R. Seiringer, J. Solovej, J. Yngvason, Physical Review A - Atomic, Molecular, and Optical Physics 70 (2004) 023612-1-0236121-2.

Kinetics of Mg(2+) unblock of NMDA receptors: implications for spike-timing dependent synaptic plasticity
B. Kampa, J. Clements, P.M. Jonas, G. Stuart, Journal of Physiology 556 (2004) 337–45.

Role of Arabidopsis ARGONAUT in RNA-directed DNA methylation triggered by inverted repeats
D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.

Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.

Silencing of transposons in plant genomes: kick them when they're down
D. Zilberman, S. Henikoff, Genome Biology 5 (2004).

Scheduling multicasts on unit-capacity trees and meshes
M.H. Henzinger, S. Leonardi, Journal of Computer and System Sciences 66 (2003) 567–611.

Challenges in web search engines
M.H. Henzinger, R. Motwani, C. Silverstein, in:, 18th International Joint Conference on Artificial Intelligence, Association for Computing Machinery, 2003, pp. 1573–1579.

Mirror symmetry, langlands duality, and the Hitchin system
T. Hausel, M. Thaddeus, Inventiones Mathematicae 153 (2003) 197–229.

Relations in the cohomology ring of the moduli space of rank 2 Higgs bundles
T. Hausel, M. Thaddeus, Journal of the American Mathematical Society 16 (2003) 303–329.

On Yang-Mills instantons over multi-centered gravitational instantons
G. Etesi, T. Hausel, Communications in Mathematical Physics 235 (2003) 275–288.

Counting rational points on del Pezzo surfaces of degree 5
T.D. Browning, M. Swarbick Jones, Proceedings of the Bonn Session in Analytic Number Theory and Diophantine Equations 360 (2003).

Bose-Einstein condensation of dilute gases in traps 
É. Lieb, R. Seiringer, in:, Y. Karpeshina, R. Weikard, Y. Zeng (Eds.), American Mathematical Society, 2003, pp. 239–250.

Poincaré inequalities in punctured domains
É. Lieb, R. Seiringer, J. Yngvason, Annals of Mathematics 158 (2003) 1067–1080.

Ground state asymptotics of a dilute, rotating gas
R. Seiringer, Journal of Physics A: Mathematical and Theoretical 36 (2003) 9755–9778.

One-dimensional Bosons in three-dimensional traps
É. Lieb, R. Seiringer, J. Yngvason, Physical Review Letters 91 (2003) 1504011–1504014.

Modeling network dynamics: the lac operon, a case study
J. Vilar, C.C. Guet, S. Leibler, Journal of Cell Biology 161 (2003) 471–476.

Unfolding pathways of native bacteriorhodopsin depend on temperature
H.L. Janovjak, M. Kessler, D. Oesterhelt, H. Gaub, D. Mueller, EMBO Journal 22 (2003) 5220–5229.

Role of the DRM and CM methyltransferases in RNA-directed DNA methylation
X. Cao, W. Aufsatz, D. Zilberman, M.F. Mette, M.S. Huang, M. Matzke, S.E. Jacobsen, Current Biology 13 (2003) 2212–2217.

Slb/Wn controls hypoblast cell migration and morphogenesis at the onset of zebrafish gastrulation
F. Ulrich, M. Concha, P. Heid, E. Voss, S. Witzel, H. Roehl, M. Tada, S. Wilson, R. Adams, D. Soll, C.-P.J. Heisenberg, Development 130 (2003) 5375–5384.

The weighted-volume derivative of a space-filling diagram
H. Edelsbrunner, P. Koehl, PNAS 100 (2003) 2203–2208.

Ran binds to chromatin by two distinct mechanisms
D. Bilbao-Cortés, M. Hetzer, G. Längst, P.B. Becker, I.W. Mattaj, Current Biology 12 (2002) 1151–1156.

Modelling mountainous water systems between learning and speculating looking for challenges
P. Burlando, F. Pellicciotti, U. Strasser, Hydrology Research 33 (2002) 47–74.

Gross-Pitaevskii theory of the rotating Bose gas
R. Seiringer, Communications in Mathematical Physics 229 (2002) 491–509.

Proof of Bose-Einstein condensation for dilute trapped gases
É. Lieb, R. Seiringer, Physical Review Letters 88 (2002) 1704091–1704094.

General decomposition of radial functions on dn and applications to N-body quantum systems
C. Hainzl, R. Seiringer, Letters in Mathematical Physics 61 (2002) 75–84.

Cell type dependence and variability in the short-term plasticity of EPSCs in identified mouse hippocampal interneurones
A. Losonczy, L. Zhang, R. Shigemoto, P. Somogyi, Z. Nusser, Journal of Physiology 542 (2002) 193–210.

Methods of generating three-dimensional digital models of objects by wrapping point cloud data points
H. Edelsbrunner, P. Fu, (2002).

Fair simulation
T.A. Henzinger, O. Kupferman, S. Rajamani, Information and Computation 173 (2002) 64–81.

The effect of deleterious alleles on adaptation in asexual populations
T. Johnson, N.H. Barton, Genetics 162 (2002) 395–411.

The effects of multilocus balancing selection on neutral variability
A. Navarro, N.H. Barton, Genetics 161 (2002) 849–863.

Associations between cytoplasmic and nuclear loci in hybridizing populations
M. Orive, N.H. Barton, Genetics 162 (2002) 1469–1485.

Timing and efficacy of Ca(2+) channel activation in hippocampal mossy fiber boutons
J. Bischofberger, J. Geiger, P.M. Jonas, Journal of Neuroscience 22 (2002) 10593–10602.

Adaptive production of fighter males: queens of the ant Cardiocondyla adjust the sex ratio under local mate competition
S. Cremer, J. Heinze, Proceedings of the Royal Society of London Series B Biological Sciences 269 (2002) 417–422.

Fast synaptic inhibition promotes synchronized gamma oscillations in hippocampal interneuron networks
M. Bartos, I. Vida, M. Frotscher, A. Meyer, H. Monyer, J. Geiger, P.M. Jonas, PNAS 99 (2002) 13222–13227.

Presynaptic short-term depression is maintained during regulation of transmitter release at a GABAergic synapse in rat hippocampus
S. Hefft, U. Kraushaar, J. Geiger, P.M. Jonas, Journal of Physiology 539 (2002) 201–8.

Gating, modulation and subunit composition of voltage-gated K(+) channels in dendritic inhibitory interneurones of rat hippocampus
C. Lien, M. Martina, J. Schultz, H. Ehmke, P.M. Jonas, Journal of Physiology 538 (2002) 405–419.

General models of multilocus evolution
M. Kirkpatrick, T. Johnson, N.H. Barton, Genetics 161 (2002) 1727–1750.

Hydra mutants of Arabidopsis are defective in sterol profiles and auxin and ethylene signaling
M. Souter, J. Topping, M. Pullen, J. Friml, K. Palme, R. Hackett, D. Grierson, K. Lindsey, Plant Cell 14 (2002) 1017–1031.

The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning
T. Hamann, E. Benková, I. Bäurle, M. Kientz, G. Jürgens, Genes and Development 16 (2002) 1610–1615.

The inhibition of glutamate release by metabotropic glutamate receptor 7 affects both [C+]c and cAMP. Evidence for a strong reduction of C+ entry in single nerve terminals
C. Millán, R. Luján, R. Shigemoto, J. Sánchez Prieto, Journal of Biological Chemistry 277 (2002) 14092–14101.

Superfluidity in dilute trapped Bose gases
É. Lieb, R. Seiringer, J. Yngvason, Physical Review B - Condensed Matter and Materials Physics 66 (2002).

The ground state of the Bose gas
É. Lieb, J. Solovej, R. Seiringer, J. Yngvason, in:, Current Developments in Mathematics, 2001, International Press, 2002, pp. 131–178.

Mass renormalization and energy level shift in non-relativistic QED
C. Hainzl, R. Seiringer, Advances in Theoretical and Mathematical Physics 6 (2002) 847–871.

Dobzhansky-Muller incompatibilities in protein evolution
A. Kondrashov, S. Sunyaev, F. Kondrashov, PNAS 99 (2002) 14878–14883.

Toric hyperkähler varieties
T. Hausel, B. Sturmfels, Documenta Mathematica 7 (2002) 495–534.

Selection in the evolution of gene duplications 
F. Kondrashov, I. Rogozin, Y. Wolf, E. Koonin, Genome Biology 3 (2002).

ICln Ion channel splice variants in Caenorhabditis elegans
J. Fürst, M. Ritter, J. Rudzki, J.G. Danzl, M. Gschwentner, E. Scandella, M. Jakab, M. König, B. Oehl, F. Lang, P. Deetjen, M. Paulmichl, Journal of Biological Chemistry 277 (2002) 4435–4445.

Molecular classification for property prediction
J. Liang, H. Edelsbrunner, (2001).

A mutation in the Gsk3-binding domain of zebrafish Masterblind/Axin1 leads to a fate transformation of telencephalon and eyes to diencephalon
C.-P.J. Heisenberg, C. Houart, M. Take Uchi, G. Rauch, N. Young, P. Coutinho, I. Masai, L. Caneparo, M. Concha, R. Geisler, T. Dale, S. Wilson, D. Stemple, Genes and Development 15 (2001) 1427–1434.

Cell adhesion and migration properties of ;22-integrin negative polymorphonuclear granulocytes on defined extracellular matrix molecules. Relevance for leukocyte extravasation
M.K. Sixt, R. Hallmann, O. Wendler, K. Scharffetter Kochanek, L. Sorokin, Journal of Biological Chemistry 276 (2001) 18878–18887.

TNF-;1-induced expression of adhesion molecules in the liver is under the control of TNF--relevance for concanavalin A-induced hepatitis
D. Wolf, R. Hallmann, G. Sass, M.K. Sixt, S. Küsters, B. Fregien, C. Trautwein, G. Tiegs, Journal of Immunology 166 (2001) 1300–1307.

Endothelial cell laminin isoforms, laminins 8 and 10, play decisive roles in T cell recruitment across the blood-brain barrier in experimental autoimmune encephalomyelitis
M.K. Sixt, B. Engelhardt, F. Pausch, R. Hallmann, O. Wendler, L. Sorokin, Journal of Cell Biology 153 (2001) 933–946.

Behavior-dependent states of the hippocampal network affect functional clustering of neurons
H. Hirase, X. Leinekugel, J.L. Csicsvari, A. Czurkó, G. Buzsáki, Journal of Neuroscience 21 (2001).

Firing rates of hippocampal neurons are preserved during subsequent sleep episodes and modified by novel awake experience
H. Hirase, X. Leinekugel, A. Czurkó, J.L. Csicsvari, G. Buzsáki, PNAS 98 (2001) 9386–9390.

Rapid signaling at inhibitory synapses in a dentate gyrus interneuron network.
M. Bartos, I. Vida, M. Frotscher, J. Geiger, P.M. Jonas, Journal of Neuroscience 21 (2001) 2687–2698.

PTP and LTP at a hippocampal mossy fiber-interneuron synapse
H. Alle, P.M. Jonas, J. Geiger, PNAS 98 (2001) 14708–14713.

Microscopic kinetics and energetics distinguish GABAA receptor agonists from antagonists
M.. Jones, P.M. Jonas, Y. Sahara, G. Westbrook, Biophysical Journal 81 (2001) 2660–2670.

BIG: A calossin-like protein required for polar auxin transport in Arabidopsis
P. Gil, E. Dewey, J. Friml, Y. Zhao, K. Snowden, J. Putterill, K. Palme, M. Estelle, J. Chory, Genes and Development 15 (2001) 1985–1997.

Localization of the auxin permease AU suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apex
R. Swarup, J. Friml, A. Marchant, K. Ljung, G. Sandberg, K. Palme, M. Bennett, Genes and Development 15 (2001) 2648–2653.

Arabidopsis thaliana Rop GTPases are localized to tips of root hairs and control polar growth
A. Molendijk, F. Bischoff, C. Rajendrakumar, J. Friml, M. Braun, S. Gilroy, K. Palme, EMBO Journal 20 (2001) 2779–2788.

Derivation of the nonlinear Schrödinger equation from a many body Coulomb system
L. Erdös, H. Yau, Advances in Theoretical and Mathematical Physics 5 (2001) 1169–1205.

Lifschitz tail in a magnetic field: Coexistence of classical and quantum behavior in the borderline case
L. Erdös, Probability Theory and Related Fields 121 (2001) 219–236.

The kernel of Dirac operators on  and 
L. Erdös, J. Solovej, Reviews in Mathematical Physics 13 (2001) 1247–1280.

Increased seizure susceptibility in mice lacking metabotropic glutamate receptor 7
G. Sansig, T. Bushell, V. Clarke, A. Rozov, N. Burnashev, C. Portet, F. Gasparini, M. Schmutz, K. Klebs, R. Shigemoto, P. Flor, R. Kühn, T. Knoepfel, M. Schroeder, D. Hampson, V. Collett, C. Zhang, R. Duvoisin, G. Collingridge, H. Van Der Putten, Journal of Neuroscience 21 (2001) 8734–8745.

A discrete density matrix theory for atoms in strong magnetic fields
C. Hainzl, R. Seiringer, Communications in Mathematical Physics 217 (2001) 229–248.

A rigorous derivation of the Gross-Pitaevskii energy functional for a two-dimensional Bose gas
É. Lieb, R. Seiringer, J. Yngvason, Communications in Mathematical Physics 224 (2001) 17–31.

On the maximal ionization of atoms in strong magnetic fields
R. Seiringer, Journal of Physics A: Mathematical and General 34 (2001) 1943–1948.

Atoms with bosonic &quot;electrons&quot; in strong magnetic fields
B. Baumgartner, R. Seiringer, Annales Henri Poincare 2 (2001) 41–76.

Bounds on one-dimensional exchange energies with application to lowest Landau band quantum mechanics
C. Hainzl, R. Seiringer, Letters in Mathematical Physics 55 (2001) 133–142.

Bosons in a trap: Asymptotic exactness of the Gross-Pitaevskii ground state energy formula
R. Seiringer, in:, M. Demuth, B. Schultze (Eds.), Birkhäuser, 2001, pp. 307–314.

Examples of mirror partners arising from integrable systems
T. Hausel, M. Thaddeus, Comptes Rendus de l’Academie Des Sciences - Series I: Mathematics 333 (2001) 313–318.

Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins 
I. Jordan, F. Kondrashov, I. Rogozin, R. Tatusov, Y. Wolf, E. Koonin, Genome Biology 2 (2001).

Geometric construction of new Yang-Mills instantons over Taub-NUT space
G. Etesi, T. Hausel, Physics Letters, Section B: Nuclear, Elementary Particle and High-Energy Physics 514 (2001) 189–199.

Geometric interpretation of Schwarzschild instantons
G. Etesi, T. Hausel, Journal of Geometry and Physics 37 (2001) 126–136.

Multidimensional epistasis and the disadvantage of sex
F. Kondrashov, A. Kondrashov, PNAS 98 (2001) 12089–12092.

GTP hydrolysis by Ran is required for nuclear envelope assembly
M. Hetzer, D. Bilbao-Cortés, T.C. Walther, O.J. Gruss, I.W. Mattaj, Molecular Cell 5 (2000) 1013–1024.

A comparison of techniques to find mirrored hosts on the WWW
K. Bharat, A. Broder, J. Dean, M.H. Henzinger, Journal of the American Society for Information Science 51 (2000) 1114–1122.

On the ordering of energy levels in homogeneous magnetic fields
B. Baumgartner, R. Seiringer, Letters in Mathematical Physics 54 (2000) 213–226.

Genetic hitchhiking
N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 355 (2000) 1553–1562.

Detecting bottlenecks and selective sweeps from DNA sequence polymorphism
N. Galtier, F. Depaulis, N.H. Barton, Genetics 155 (2000) 981–987.

Efficacy and stability of quantal GABA release at a hippocampal interneuron-principal neuron synapse
U. Kraushaar, P.M. Jonas, Journal of Neuroscience 20 (2000) 5594–5607.

Associative long-term depression in the hippocampus is dependent on postsynaptic N-type Ca(2+) channels
C. Normann, D. Peckys, C. Schulze, J. Walden, P.M. Jonas, J. Bischofberger, Journal of Neuroscience 20 (2000) 8290–8297.

Interaction of Drosophila melanogaster prohormone convertase 2 and 7: Insect cell specific processing and secretion
J. Hwang, D.E. Siekhaus, R. Fuller, P. Taghert, I. Lindberg, Journal of Biological Chemistry 275 (2000) 17886–17893.

Selective blockade of P/Q-type calcium channels by the metabotropic glutamate receptor type 7 involves a phospholipase C pathway in neurons
J. Perroy, L. Prezèau, M. De Waard, R. Shigemoto, J. Bockaërt, L. Fagni, Journal of Neuroscience 20 (2000) 7896–7904.

Paraneoplastic cerebellar ataxia due to autoantibodies against a glutamate receptor
P. Sillevis Smitt, A. Kinoshita, B. De Leeuw, W. Moll, M. Coesmans, D. Jaarsma, S. Henzen Logmans, C. Vecht, C. De Zeeuw, N. Sekiyama, S. Nakanishi, R. Shigemoto, New England Journal of Medicine 342 (2000) 21–27.

Bosons in a trap: A rigorous derivation of the Gross-Pitaevskii energy functional
É. Lieb, R. Seiringer, J. Yngvason, Physical Review A - Atomic, Molecular, and Optical Physics 61 (2000) 436021–4360213.

The ground state energy and density of interacting bosons in a trap
R. Seiringer, É. Lieb, J. Yngvason, in:, Proceedings of the International Symposium on Quantum Theory and Symmetries, World Scientific Publishing, 2000, pp. 101–110.

Inscribing cubes and covering by rhombic dodecahedra via equivariant topology
T. Hausel, E. Makai, A. Szücs, Mathematika 47 (2000) 371–397.

Analysis of a very large web search engine query log
C. Silverstein, H. Marais, M.H. Henzinger, M. Moricz, ACM SIGIR Forum 33 (1999) 6–12.