Scalable enumeration of trap spaces in boolean networks via answer set programming
G. Trinh, B. Benhamou, S. Pastva, S. Soliman, in:, Proceedings of the 38th AAAI Conference on Artificial Intelligence, Association for the Advancement of Artificial Intelligence, 2024, pp. 10714–10722.
LibreCat: https://research-explorer.ista.ac.at/record/15321
DOI: 10.1609/aaai.v38i9.28943

Boolean network sketches: A unifying framework for logical model inference
N. Benes, L. Brim, O. Huvar, S. Pastva, D. Safránek, Bioinformatics 39 (2023).
LibreCat: https://research-explorer.ista.ac.at/record/12876
DOI: 10.1093/bioinformatics/btad158
WoS: 000976610800001
PMID: 37004199

Trap spaces of multi-valued networks: Definition, computation, and applications
V.G. Trinh, B. Benhamou, T.A. Henzinger, S. Pastva, Bioinformatics 39 (2023) i513–i522.
LibreCat: https://research-explorer.ista.ac.at/record/13263
DOI: 10.1093/bioinformatics/btad262
WoS: 001027457000060
PMID: 37387165

Binary decision diagrams on modern hardware
S. Pastva, T.A. Henzinger, in:, Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design, TU Vienna Academic Press, 2023, pp. 122–131.
LibreCat: https://research-explorer.ista.ac.at/record/14718
DOI: 10.34727/2023/isbn.978-3-85448-060-0_20

Phenotype control of partially specified boolean networks
N. Benes, L. Brim, S. Pastva, D. Safránek, E. Smijáková, in:, 21st International Conference on Computational Methods in Systems Biology, Springer Nature, 2023, pp. 18–35.
LibreCat: https://research-explorer.ista.ac.at/record/14411
DOI: 10.1007/978-3-031-42697-1_2