Kupczok A, Bollback JP. 2014. Motif depletion in bacteriophages infecting hosts with CRISPR systems. BMC Genomics. 15(1), 663.
LibreCat: https://research-explorer.ista.ac.at/record/2042
DOI: 10.1186/1471-2164-15-663

Kupczok A, Bollback JP. 2013. Probabilistic models for CRISPR spacer content evolution . BMC Evolutionary Biology. 13(1), 54–54.
LibreCat: https://research-explorer.ista.ac.at/record/2412
DOI: 10.1186/1471-2148-13-54

Fernandes Redondo RA, Kupczok A, Stift G, Bollback JP. 2013. Complete genome sequence of the novel phage MG- infecting bacillus weihenstephanensis. Genome Announcements. 1(3).
LibreCat: https://research-explorer.ista.ac.at/record/2410
DOI: 10.1128/genomeA.00216-13

Ebersberger I, De Matos Simoes R, Kupczok A, Gube M, Kothe E, Voigt K, Von Haeseler A. 2012. A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. 29(5), 1319–1334.
LibreCat: https://research-explorer.ista.ac.at/record/2411
DOI: 10.1093/molbev/msr285

Kupczok A. 2011. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 60(2), 218–225.
LibreCat: https://research-explorer.ista.ac.at/record/3370
DOI: 10.1093/sysbio/syq086

Kupczok A. 2011. Split based computation of majority rule supertrees. BMC Evolutionary Biology. 11(205), 205.
LibreCat: https://research-explorer.ista.ac.at/record/3387
DOI: 10.1186/1471-2148-11-205

Kupczok A, Schmidt H, Von Haeseler A. 2010. Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. 5(1), 37.
LibreCat: https://research-explorer.ista.ac.at/record/2409
DOI: 10.1186/1748-7188-5-37

Kupczok A, Von Haeseler A. 2009. Comment on ‘A congruence index for testing topological similarity between trees’. Bioinformatics. 25(1), 147–149.
LibreCat: https://research-explorer.ista.ac.at/record/3768
DOI: 4199

Kupczok A, Von Haeseler A, Klaere S. 2008. An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees. Journal of Computational Biology. 15(6), 577–591.
LibreCat: https://research-explorer.ista.ac.at/record/3769
DOI: 4200

Kupczok A, Dittrich P. 2006. Determinants of simulated RNA evolution. Journal of Theoretical Biology. 238(3), 726–35.
LibreCat: https://research-explorer.ista.ac.at/record/3767
DOI: 10.1016/j.jtbi.2005.06.019