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Hannezo, E. B., &; Scheele, C. L. G. J. (2023). A Guide Toward Multi-scale and Quantitative Branching Analysis in the Mammary Gland. In C. Margadant (Ed.), Cell Migration in Three Dimensions (Vol. 2608, pp. 183–205). Springer Nature.https://doi.org/10.1007/978-1-0716-2887-4_12 
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Boocock, D. R., Hirashima, T., &; Hannezo, E. B. (2023). Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. PRX Life. American Physical Society.https://doi.org/10.1103/prxlife.1.013001 
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Schamberger, B., Ziege, R., Anselme, K., Ben Amar, M., Bykowski, M., Castro, A. P. G.,https://doi.org/10.1002/adma.202206110__Dunlop, J. W. C. (2023). Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. Wiley.https://doi.org/10.1002/adma.202206110 
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Bocanegra, L., Singh, A., Hannezo, E. B., Zagórski, M. P., &; Kicheva, A. (2023). Cell cycle dynamics control fluidity of the developing mouse neuroepithelium. Nature Physics. Springer Nature.https://doi.org/10.1038/s41567-023-01977-w 
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Unterweger, I. A., Klepstad, J., Hannezo, E. B., Lundegaard, P. R., Trusina, A., &; Ober, E. A. (2023). Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. Public Library of Science.https://doi.org/10.1371/journal.pbio.3002315 
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Ucar, M. C., Hannezo, E. B., Tiilikainen, E., Liaqat, I., Jakobsson, E., Nurmi, H., &; Vaahtomeri, K. (2023). Self-organized and directed branching results in optimal coverage in developing dermal lymphatic networks. Nature Communications. Springer Nature.https://doi.org/10.1038/s41467-023-41456-7 
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Alanko, J. H., Ucar, M. C., Canigova, N., Stopp, J. A., Schwarz, J., Merrin, J.,https://doi.org/10.1126/sciimmunol.adc9584__Sixt, M. K. (2023). CC acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration. Science Immunology. American Association for the Advancement of Science.https://doi.org/10.1126/sciimmunol.adc9584 
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Corominas-Murtra, B., &; Hannezo, E. B. (2023). Modelling the dynamics of mammalian gut homeostasis. Seminars in Cell &; Developmental Biology. Elsevier.https://doi.org/10.1016/j.semcdb.2022.11.005 
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Grober, D., Palaia, I., Ucar, M. C., Hannezo, E. B., Sari, A., &; Palacci, J. A. (2023). Unconventional colloidal aggregation in chiral bacterial baths. Nature Physics. Springer Nature.https://doi.org/10.1038/s41567-023-02136-x 
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Dunajova, Z., Prats Mateu, B., Radler, P., Lim, K., Brandis, D., Velicky, P.,https://doi.org/10.15479/AT:ISTA:13116__Loose, M. (2023). Chiral and nematic phases of flexible active filaments. Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:13116 
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Dunajova, Z., Prats Mateu, B., Radler, P., Lim, K., Brandis, D., Velicky, P.,https://doi.org/10.1038/s41567-023-02218-w__Loose, M. (2023). Chiral and nematic phases of flexible active filaments. Nature Physics. Springer Nature.https://doi.org/10.1038/s41567-023-02218-w 
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Assen, F. P., Abe, J., Hons, M., Hauschild, R., Shamipour, S., Kaufmann, W.,https://doi.org/10.1038/s41590-022-01257-4__Sixt, M. K. (2022). Multitier mechanics control stromal adaptations in swelling lymph nodes. Nature Immunology. Springer Nature.https://doi.org/10.1038/s41590-022-01257-4 
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Hannezo, E. B., &; Heisenberg, C.-P. J. (2022). Rigidity transitions in development and disease. Trends in Cell Biology. Cell Press.https://doi.org/10.1016/j.tcb.2021.12.006 
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Yanagida, A., Corujo-Simon, E., Revell, C. K., Sahu, P., Stirparo, G. G., Aspalter, I. M.,https://doi.org/10.1016/j.cell.2022.01.022__Chalut, K. J. (2022). Cell surface fluctuations regulate early embryonic lineage sorting. Cell. Cell Press.https://doi.org/10.1016/j.cell.2022.01.022 
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Nunes Pinheiro, D. C., Kardos, R., Hannezo, E. B., &; Heisenberg, C.-P. J. (2022). Morphogen gradient orchestrates pattern-preserving tissue morphogenesis via motility-driven unjamming. Nature Physics. Springer Nature.https://doi.org/10.1038/s41567-022-01787-6 
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Randriamanantsoa, S., Papargyriou, A., Maurer, H. C., Peschke, K., Schuster, M., Zecchin, G.,https://doi.org/10.1038/s41467-022-32806-y__Bausch, A. R. (2022). Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids. Nature Communications. Springer Nature.https://doi.org/10.1038/s41467-022-32806-y 
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Stock, J., Kazmar, T., Schlumm, F., Hannezo, E. B., &; Pauli, A. (2022). A self-generated Toddler gradient guides mesodermal cell migration. Science Advances. American Association for the Advancement of Science.https://doi.org/10.1126/sciadv.add2488 
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Brückner, D., Schmitt, M., Fink, A., Ladurner, G., Flommersfeld, J., Arlt, N.,https://doi.org/10.1103/physrevx.12.031041__Broedersz, C. P. (2022). Geometry adaptation of protrusion and polarity dynamics in confined cell migration. Physical Review X. American Physical Society.https://doi.org/10.1103/physrevx.12.031041 
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Azkanaz, M., Corominas-Murtra, B., Ellenbroek, S. I. J., Bruens, L., Webb, A. T., Laskaris, D.,https://doi.org/10.1038/s41586-022-04962-0__van Rheenen, J. (2022). Retrograde movements determine effective stem cell numbers in the intestine. Nature. Springer Nature.https://doi.org/10.1038/s41586-022-04962-0 
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Randriamanantsoa, S., Papargyriou, A., Maurer, C., Peschke, K., Schuster, M., Zecchin, G.,https://doi.org/10.5281/ZENODO.5148117__Bausch, A. R. (2021). Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids. Zenodo.https://doi.org/10.5281/ZENODO.5148117 
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Hankeova, S., Salplachta, J., Zikmund, T., Kavkova, M., Van Hul, N., Brinek, A.,https://doi.org/10.7554/eLife.60916__Andersson, E. R. (2021). DUCT reveals architectural mechanisms contributing to bile duct recovery in a mouse model for alagille syndrome. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.60916 
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Dobramysl, U., Jarsch, I. K., Inoue, Y., Shimo, H., Richier, B., Gadsby, J. R.,https://doi.org/10.1083/jcb.202003052__Gallop, J. L. (2021). Stochastic combinations of actin regulatory proteins are sufficient to drive filopodia formation. Journal of Cell Biology. Rockefeller University Press.https://doi.org/10.1083/jcb.202003052 
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Petridou, N., Corominas-Murtra, B., Heisenberg, C.-P. J., &; Hannezo, E. B. (2021). Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. Cell. Elsevier.https://doi.org/10.1016/j.cell.2021.02.017 
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Lenne, P. F., Munro, E., Heemskerk, I., Warmflash, A., Bocanegra, L., Kishi, K.,https://doi.org/10.1088/1478-3975/abd0db__Tlili, S. (2021). Roadmap for the multiscale coupling of biochemical and mechanical signals during development. Physical Biology. IOP Publishing.https://doi.org/10.1088/1478-3975/abd0db 
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Yang, Q., Xue, S., Chan, C. J., Rempfler, M., Vischi, D., Maurer-Gutierrez, F.,https://doi.org/10.1038/s41556-021-00700-2__Liberali, P. (2021). Cell fate coordinates mechano-osmotic forces in intestinal crypt formation. Nature Cell Biology. Springer Nature.https://doi.org/10.1038/s41556-021-00700-2 
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Chaigne, A., Smith, M. B., Cavestany, R. L., Hannezo, E. B., Chalut, K. J., &; Paluch, E. K. (2021). Three-dimensional geometry controls division symmetry in stem cell colonies. Journal of Cell Science. The Company of Biologists.https://doi.org/10.1242/jcs.255018 
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Ucar, M. C., Kamenev, D., Sunadome, K., Fachet, D. C., Lallemend, F., Adameyko, I.,https://doi.org/10.1038/s41467-021-27135-5__Hannezo, E. B. (2021). Theory of branching morphogenesis by local interactions and global guidance. Nature Communications. Springer Nature.https://doi.org/10.1038/s41467-021-27135-5 
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Munjal, A., Hannezo, E. B., Tsai, T. Y. C., Mitchison, T. J., &; Megason, S. G. (2021). Extracellular hyaluronate pressure shaped by cellular tethers drives tissue morphogenesis. Cell. Elsevierf; Cell Press.https://doi.org/10.1016/j.cell.2021.11.025 
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Luciano, M., Xue, S., De Vos, W. H., Redondo-Morata, L., Surin, M., Lafont, F.,https://doi.org/10.1038/s41567-021-01374-1__Gabriele, S. (2021). Cell monolayers sense curvature by exploiting active mechanics and nuclear mechanoadaptation. Nature Physics. Springer Nature.https://doi.org/10.1038/s41567-021-01374-1 
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Boocock, D. R., Hino, N., Ruzickova, N., Hirashima, T., &; Hannezo, E. B. (2021). Theory of mechanochemical patterning and optimal migration in cell monolayers. Nature Physics. Springer Nature.https://doi.org/10.1038/s41567-020-01037-7 
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Dekoninck, S., Hannezo, E. B., Sifrim, A., Miroshnikova, Y. A., Aragona, M., Malfait, M.,https://doi.org/10.1016/j.cell.2020.03.015__Blanpain, C. (2020). Defining the design principles of skin epidermis postnatal growth. Cell. Elsevier.https://doi.org/10.1016/j.cell.2020.03.015 
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Corominas-Murtra, B., Scheele, C. L. G. J., Kishi, K., Ellenbroek, S. I. J., Simons, B. D., Van Rheenen, J., &; Hannezo, E. B. (2020). Stem cell lineage survival as a noisy competition for niche access. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences.https://doi.org/10.1073/pnas.1921205117 
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Sznurkowska, M. K., Hannezo, E. B., Azzarelli, R., Chatzeli, L., Ikeda, T., Yoshida, S.,https://doi.org/10.1038/s41467-020-18837-3__Simons, B. D. (2020). Tracing the cellular basis of islet specification in mouse pancreas. Nature Communications. Springer Nature.https://doi.org/10.1038/s41467-020-18837-3 
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Chaigne, A., Labouesse, C., White, I. J., Agnew, M., Hannezo, E. B., Chalut, K. J., &; Paluch, E. K. (2020). Abscission couples cell division to embryonic stem cell fate. Developmental Cell. Elsevier.https://doi.org/10.1016/j.devcel.2020.09.001 
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Andersen, M. S., Hannezo, E. B., Ulyanchenko, S., Estrach, S., Antoku, Y., Pisano, S.,https://doi.org/10.1038/s41556-019-0362-x__Jensen, K. B. (2019). Tracing the cellular dynamics of sebaceous gland development in normal and perturbed states. Nature Cell Biology. Springer Nature.https://doi.org/10.1038/s41556-019-0362-x 
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Recho, P., Hallou, A., &; Hannezo, E. B. (2019). Theory of mechanochemical patterning in biphasic biological tissues. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences.https://doi.org/10.1073/pnas.1813255116 
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Guiu, J., Hannezo, E. B., Yui, S., Demharter, S., Ulyanchenko, S., Maimets, M.,https://doi.org/10.1038/s41586-019-1212-5__Jensen, K. B. (2019). Tracing the origin of adult intestinal stem cells. Nature. Springer Nature.https://doi.org/10.1038/s41586-019-1212-5 
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Hannezo, E. B., &; Simons, B. D. (2019). Multiscale dynamics of branching morphogenesis. Current Opinion in Cell Biology. Elsevier.https://doi.org/10.1016/j.ceb.2019.04.008 
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Hannezo, E. B., &; Heisenberg, C.-P. J. (2019). Mechanochemical feedback loops in development and disease. Cell. Elsevier.https://doi.org/10.1016/j.cell.2019.05.052 
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Krndija, D., Marjou, F. E., Guirao, B., Richon, S., Leroy, O., Bellaiche, Y.,https://doi.org/10.1126/science.aau3429__Vignjevic, D. M. (2019). Active cell migration is critical for steady-state epithelial turnover in the gut. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.aau3429 
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Petridou, N., Grigolon, S., Salbreux, G., Hannezo, E. B., &; Heisenberg, C.-P. J. (2019). Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. Nature Cell Biology. Nature Publishing Group.https://doi.org/10.1038/s41556-018-0247-4 
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Shamipour, S., Kardos, R., Xue, S., Hof, B., Hannezo, E. B., &; Heisenberg, C.-P. J. (2019). Bulk actin dynamics drive phase segregation in zebrafish oocytes. Cell. Elsevier.https://doi.org/10.1016/j.cell.2019.04.030 
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Qin, X., Hannezo, E. B., Mangeat, T., Liu, C., Majumder, P., Liu, J.,https://doi.org/10.1038/s41467-018-03574-5__Wang, X. (2018). A biochemical network controlling basal myosin oscillation. Nature Communications. Nature Publishing Group.https://doi.org/10.1038/s41467-018-03574-5 
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Lilja, A., Rodilla, V., Huyghe, M., Hannezo, E. B., Landragin, C., Renaud, O.,https://doi.org/10.1038/s41556-018-0108-1__Fré, S. (2018). Clonal analysis of Notc-expressing cells reveals the existence of unipotent stem cells that retain long-term plasticity in the embryonic mammary gland. Nature Cell Biology. Nature Publishing Group.https://doi.org/10.1038/s41556-018-0108-1 
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Sznurkowska, M., Hannezo, E. B., Azzarelli, R., Rulands, S., Nestorowa, S., Hindley, C.,https://doi.org/10.1016/j.devcel.2018.06.028__Simons, B. (2018). Defining lineage potential and fate behavior of precursors during pancreas development. Developmental Cell. Cell Press.https://doi.org/10.1016/j.devcel.2018.06.028 
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Hannezo, E. B., &; Simons, B. D. (2018). Statistical theory of branching morphogenesis. Development Growth and Differentiation. Wiley.https://doi.org/10.1111/dgd.12570 
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Dasbiswas, K., Hannezo, E. B., &; Gov, N. (2018). Theory of eppithelial cell shape transitions induced by mechanoactive chemical gradients. Biophysical Journal. Biophysical Society.https://doi.org/10.1016/j.bpj.2017.12.022 
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Scheele, C., Hannezo, E. B., Muraro, M., Zomer, A., Langedijk, N., Van Oudenaarden, A.,https://doi.org/10.1038/nature21046__Van Rheenen, J. (2017). Identity and dynamics of mammary stem cells during branching morphogenesis. Nature. Nature Publishing Group.https://doi.org/10.1038/nature21046 
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Sedzinski, J., Hannezo, E. B., Tu, F., Biro, M., &; Wallingford, J. (2017). RhoA regulates actin network dynamics during apical surface emergence in multiciliated epithelial cells . Journal of Cell Science. Company of Biologists.https://doi.org/10.1242/jcs.202234 
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Pinheiro, D., Hannezo, E. B., Herszterg, S., Bosveld, F., Gaugué, I., Balakireva, M.,https://doi.org/10.1038/nature22041__Bellaïche, Y. (2017). Transmission of cytokinesis forces via E cadherin dilution and actomyosin flows. Nature. Nature Publishing Group.https://doi.org/10.1038/nature22041 
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Hannezo, E. B., Scheele, C., Moad, M., Drogo, N., Heer, R., Sampogna, R.,https://doi.org/10.1016/j.cell.2017.08.026__Simons, B. (2017). A unifying theory of branching morphogenesis. Cell. Cell Press.https://doi.org/10.1016/j.cell.2017.08.026 
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Sánchez Danés, A., Hannezo, E. B., Larsimont, J., Liagre, M., Youssef, K., Simons, B., &; Blanpain, C. (2016). Defining the clonal dynamics leading to mouse skin tumour initiation. Nature. Nature Publishing Group.https://doi.org/10.1038/nature19069 
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Hannezo, E. B., Coucke, A., &; Joanny, J. (2016). Interplay of migratory and division forces as a generic mechanism for stem cell patterns. Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics.https://doi.org/10.1103/PhysRevE.93.022405 
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Sedzinski, J., Hannezo, E. B., Tu, F., Biro, M., &; Wallingford, J. (2016). Emergence of an Apical Epithelial Cell Surface In Vivo. Developmental Cell. Cell Press.https://doi.org/10.1016/j.devcel.2015.12.013 
LibreCat: https://research-explorer.ista.ac.at/record/932
DOI: 10.1016/j.devcel.2015.12.013

Sehring, I., Recho, P., Denker, E., Kourakis, M., Mathiesen, B., Hannezo, E. B.,https://doi.org/10.7554/eLife.09206__Jiang, D. (2015). Assembly and positioning of actomyosin rings by contractility and planar cell polarity. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.09206 
LibreCat: https://research-explorer.ista.ac.at/record/928
DOI: 10.7554/eLife.09206

Boubaker, R., Platel, V., Bergès, A., Bancelin, M., &; Hannezo, E. B. (2015). Dynamic model of heat and mass transfer in an unsaturated porous wick of capillary pumped loop. Applied Thermal Engineering. Elsevier.https://doi.org/10.1016/j.applthermaleng.2014.10.009 
LibreCat: https://research-explorer.ista.ac.at/record/924
DOI: 10.1016/j.applthermaleng.2014.10.009

Hannezo, E. B., Dong, B., Recho, P., Joanny, J., &; Hayashi, S. (2015). Cortical instability drives periodic supracellular actin pattern formation in epithelial tubes. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1504762112 
LibreCat: https://research-explorer.ista.ac.at/record/929
DOI: 10.1073/pnas.1504762112

García, S., Hannezo, E. B., Elgeti, J., Joanny, J., Silberzan, P., &; Gov, N. (2015). Physics of active jamming during collective cellular motion in a monolayer. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1510973112 
LibreCat: https://research-explorer.ista.ac.at/record/933
DOI: 10.1073/pnas.1510973112
PMID: 26627719

Dong, B., Hannezo, E. B., &; Hayashi, S. (2014). Balance between apical membrane growth and luminal matrix resistance determines epithelial tubule shape. Cell Reports. Cell Press.https://doi.org/10.1016/j.celrep.2014.03.066 
LibreCat: https://research-explorer.ista.ac.at/record/925
DOI: 10.1016/j.celrep.2014.03.066

Hannezo, E. B., Prost, J., &; Joanny, J. (2014). Theory of epithelial sheet morphology in three dimensions. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1312076111 
LibreCat: https://research-explorer.ista.ac.at/record/927
DOI: 10.1073/pnas.1312076111

Hannezo, E. B., Prost, J., &; Joanny, J. (2014). Growth homeostatic regulation and stem cell dynamics in tissues. Journal of the Royal Society Interface. Royal Society of London.https://doi.org/10.1098/rsif.2013.0895 
LibreCat: https://research-explorer.ista.ac.at/record/926
DOI: 10.1098/rsif.2013.0895

Basan, M., Elgeti, J., Hannezo, E. B., Rappel, W., &; Levine, H. (2013). Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1219937110 
LibreCat: https://research-explorer.ista.ac.at/record/921
DOI: 10.1073/pnas.1219937110

Hannezo, E. B., Prost, J., &; Joanny, J. (2012). Mechanical instabilities of biological tubes. Physical Review Letters. American Physical Society.https://doi.org/10.1103/PhysRevLett.109.018101 
LibreCat: https://research-explorer.ista.ac.at/record/922
DOI: 10.1103/PhysRevLett.109.018101
arXiv: 1207.1516

Fré, S., Hannezo, E. B., Sale, S., Huyghe, M., Lafkas, D., Kissel, H.,https://doi.org/10.1371/journal.pone.0025785__Artavanis Tsakonas, S. (2011). Notch lineages and activity in intestinal stem cells determined by a new set of knock in mice. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0025785 
LibreCat: https://research-explorer.ista.ac.at/record/923
DOI: 10.1371/journal.pone.0025785

Angelini, T., Hannezo, E. B., Trepatc, X., Marquez, M., Fredberg, J., &; Weitz, D. (2011). Glass-like dynamics of collective cell migration. Proceedings of the National Academy of Sciences of the United States of America. PNAS.https://doi.org/10.1073/pnas.1010059108 
LibreCat: https://research-explorer.ista.ac.at/record/919
DOI: 10.1073/pnas.1010059108

Hannezo, E. B., Prost, J., &; Joanny, J. (2011). Instabilities of monolayered epithelia Shape and structure of villi and crypts. Physical Review Letters. American Physical Society.https://doi.org/10.1103/PhysRevLett.107.078104 
LibreCat: https://research-explorer.ista.ac.at/record/918
DOI: 10.1103/PhysRevLett.107.078104

Angelini, T., Hannezo, E. B., Trepat, X., Fredberg, J., &; Weitz, D. (2010). Cell migration driven by cooperative substrate deformation patterns. Physical Review Letters. American Physical Society.https://doi.org/10.1103/PhysRevLett.104.168104 
LibreCat: https://research-explorer.ista.ac.at/record/920
DOI: 10.1103/PhysRevLett.104.168104