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Lagator, M., Sarikas, S., Steinrueck, M., Toledo-Aparicio, D., Bollback, J. P., Guet, C. C., &; Tkadik, G. (2022). Predicting bacterial promoter function and evolution from random sequences. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.64543 
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Tomasek, K., Leithner, A. F., Glatzová, I., Lukesch, M. S., Guet, C. C., &; Sixt, M. K. (2022). Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to C. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.78995 
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Tomanek, I., &; Guet, C. C. (2022). Adaptation dynamics between copynumber and point mutations. ELife. eLife Sciences Publications.https://doi.org/10.7554/ELIFE.82240 
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Tomanek, I., &; Guet, C. C. (2022). Flow cytometry YFP and CFP data and deep sequencing data of populations evolving in galactose. Dryad.https://doi.org/10.5061/dryad.rfj6q57ds 
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Petrov, T., Igler, C., Sezgin, A., Henzinger, T. A., &; Guet, C. C. (2021). Long lived transients in gene regulation. Theoretical Computer Science. Elsevier.https://doi.org/10.1016/j.tcs.2021.05.023 
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Zisis, T., Schwarz, J., Balles, M., Kretschmer, M., Nemethova, M., Chait, R. P.,https://doi.org/10.1021/acsami.1c09850__Zahler, S. (2021). Sequential and switchable patterning for studying cellular processes under spatiotemporal control. ACS Applied Materials and Interfaces. American Chemical Society.https://doi.org/10.1021/acsami.1c09850 
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Nagy-Staron, A. A., Tomasek, K., Caruso Carter, C., Sonnleitner, E., Kavcic, B., Paixão, T., &; Guet, C. C. (2021). Local genetic context shapes the function of a gene regulatory network. ELife. eLife Sciences Publications.https://doi.org/10.7554/elife.65993 
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Tomasek, K., Leithner, A. F., Glatzová, I., Lukesch, M. S., Guet, C. C., &; Sixt, M. K. (n.d.). Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to C. bioRxiv. Cold Spring Harbor Laboratory.https://doi.org/10.1101/2021.10.18.464770 
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Tomanek, I., Grah, R., Lagator, M., Andersson, A. M. C., Bollback, J. P., Tkadik, G., &; Guet, C. C. (2020). Gene amplification as a form of population-level gene expression regulation. Nature Ecology &; Evolution. Springer Nature.https://doi.org/10.1038/s41559-020-1132-7 
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Ruess, J., Pleska, M., Guet, C. C., &; Tkadik, G. (2019). Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1007168 
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Ruess, J., Pleska, M., Guet, C. C., &; Tkadik, G. (2019). Supporting text and results. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1007168.s001 
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Guet, C. C., Henzinger, T. A., Igler, C., Petrov, T., &; Sezgin, A. (2019). Transient memory in gene regulation. In 17th International Conference on Computational Methods in Systems Biology (Vol. 11773, pp. 155–187). Trieste, Italy: Springer Nature.https://doi.org/10.1007/978-3-030-31304-3_9 
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Tomasek, K., Bergmiller, T., &; Guet, C. C. (2018). Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. Elsevier.https://doi.org/10.1016/j.jbiotec.2018.01.008 
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Chaudhry, W., Pleska, M., Shah, N., Weiss, H., Mccall, I., Meyer, J.,https://doi.org/10.1371/journal.pbio.2005971.s008__Levin, B. (2018). Numerical data used in figures. Public Library of Science.https://doi.org/10.1371/journal.pbio.2005971.s008 
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Pleska, M., Lang, M., Refardt, D., Levin, B., &; Guet, C. C. (2018). Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution. Springer Nature.https://doi.org/10.1038/s41559-017-0424-z 
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De Martino, D., Mc, A. A., Bergmiller, T., Guet, C. C., &; Tkadik, G. (2018). Statistical mechanics for metabolic networks during steady state growth. Nature Communications. Springer Nature.https://doi.org/10.1038/s41467-018-05417-9 
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Igler, C., Lagator, M., Tkadik, G., Bollback, J. P., &; Guet, C. C. (2018). Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution. Nature Publishing Group.https://doi.org/10.1038/s41559-018-0651-y 
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Igler, C., Lagator, M., Tkadik, G., Bollback, J. P., &; Guet, C. C. (2018). Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:108 
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Lagator, M., Sarikas, S., Acar, H., Bollback, J. P., &; Guet, C. C. (2017). Regulatory network structure determines patterns of intermolecular epistasis. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.28921 
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Chait, R. P., Ruess, J., Bergmiller, T., Tkadik, G., &; Guet, C. C. (2017). Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications. Nature Publishing Group.https://doi.org/10.1038/s41467-017-01683-1 
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Renault, T., Abraham, A., Bergmiller, T., Paradis, G., Rainville, S., Charpentier, E.,https://doi.org/10.7554/eLife.23136__Erhardt, M. (2017). Bacterial flagella grow through an injection diffusion mechanism. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.23136 
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Pleska, M., &; Guet, C. C. (2017). Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification. The Royal Society.https://doi.org/10.6084/m9.figshare.5633917.v1 
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Pleska, M., &; Guet, C. C. (2017). Effects of mutations in phage restriction sites during escape from restriction–modification. Biology Letters. The Royal Society.https://doi.org/10.1098/rsbl.2017.0646 
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Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., &; Petrov, T. (2017). Model checking the evolution of gene regulatory networks. Acta Informatica. Springer.https://doi.org/10.1007/s00236-016-0278-x 
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Lagator, M., Paixao, T., Barton, N. H., Bollback, J. P., &; Guet, C. C. (2017). On the mechanistic nature of epistasis in a canonical cis-regulatory element. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.25192 
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Steinrück, M., &; Guet, C. C. (2017). Fastq files for “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection.”https://doi.org/10.15479/AT:ISTA:65__Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:65 
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Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R.,https://doi.org/10.15479/AT:ISTA:53__Guet, C. C. (2017). Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:53 
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Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R.,https://doi.org/10.1126/science.aaf4762__Guet, C. C. (2017). Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.aaf4762 
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Steinrück, M., &; Guet, C. C. (2017). Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.25100 
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Barone, V., Lang, M., Krens, G., Pradhan, S., Shamipour, S., Sako, K.,https://doi.org/10.1016/j.devcel.2017.09.014__Heisenberg, C.-P. J. (2017). An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell. Cell Press.https://doi.org/10.1016/j.devcel.2017.09.014 
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Lagator, M., Igler, C., Moreno, A., Guet, C. C., &; Bollback, J. P. (2016). Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution. Oxford University Press.https://doi.org/10.1093/molbev/msv269 
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Beica, A., Guet, C. C., &; Petrov, T. (2016). Efficient reduction of kappa models by static inspection of the rule-set (Vol. 9271, pp. 173–191). Presented at the HSB: Hybrid Systems Biology, Madrid, Spain: Springer.https://doi.org/10.1007/978-3-319-26916-0_10 
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Pleska, M., Qian, L., Okura, R., Bergmiller, T., Wakamoto, Y., Kussell, E., &; Guet, C. C. (2016). Bacterial autoimmunity due to a restriction-modification system. Current Biology. Cell Press.https://doi.org/10.1016/j.cub.2015.12.041 
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Friedlander, T., Prizak, R., Guet, C. C., Barton, N. H., &; Tkadik, G. (2016). Intrinsic limits to gene regulation by global crosstalk. Nature Communications. Nature Publishing Group.https://doi.org/10.1038/ncomms12307 
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Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., &; Petrov, T. (2015). Model checking gene regulatory networks. Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, London, United Kingdom: Springer.https://doi.org/10.1007/978-3-662-46681-0_47 
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Hadizadeh Yazdi, N., Guet, C. C., Johnson, R., &; Marko, J. (2012). Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. Wiley-Blackwell.https://doi.org/10.1111/mmi.12071 
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Park, H., Oikonomou, P., Guet, C. C., &; Cluzel, P. (2011). Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. Elsevier.https://doi.org/10.1016/j.bpj.2011.09.040 
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Guet, C. C., Bruneaux, L., Min, T., Siegal Gaskins, D., Figueroa, I., Emonet, T., &; Cluzel, P. (2008). Minimally invasive determination of mRNA concentration in single living bacteria. Nucleic Acids Research. Oxford University Press.https://doi.org/10.1093/nar/gkn329 
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Le, T., Guet, C. C., &; Cluzel, P. (2006). Protein expression enhancement in efflux-deleted mutant bacteria. Protein Expression and Purification. Elsevier.
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Le, T., Emonet, T., Harlepp, S., Guet, C. C., &; Cluzel, P. (2006). Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. Biophysical Society.https://doi.org/10.1529/biophysj.105.073353 
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