A tutorial for mesoscale computer simulations of lipid membranes: Tether pulling, tubulation and fluctuations
M. Muñoz Basagoiti, F.F. Frey, B. Meadowcroft, M. Santana de Freitas Amaral, A. Prada, A. Sari, Soft Matter (2025).

Archaeal membranes : In silico modelling and design
M. Santana de Freitas Amaral, Archaeal Membranesf: In Silico Modelling and Design, Institute of Science and Technology Austria, 2024.

Stability vs flexibility: Reshaping archaeal membranes in silico
M. Santana de Freitas Amaral, F.F. Frey, X. Jiang, B. Baum, A. Sari, BioRxiv (n.d.).