Yurtseven, Alper, Sofia Buyanova, Amay Ajaykumar A. Agrawal, Olga Bochkareva, and Olga V V. Kalinina. “Machine Learning and Phylogenetic Analysis Allow for Predicting Antibiotic Resistance in M. Tuberculosis.”https://doi.org/10.1186/s12866-023-03147-7__BMC Microbiology. Springer Nature, 2023.https://doi.org/10.1186/s12866-023-03147-7 .
LibreCat: https://research-explorer.ista.ac.at/record/14716
DOI: 10.1186/s12866-023-03147-7
PMID: 38124060

Zabelkin, Alexey, Yulia Yakovleva, Olga Bochkareva, and Nikita Alexeev. “PaReBrick: PArallel REarrangements and BReaks Identification Toolkit.”https://doi.org/10.1093/bioinformatics/btab691__Bioinformatics. Oxford Academic, 2022.https://doi.org/10.1093/bioinformatics/btab691 .
LibreCat: https://research-explorer.ista.ac.at/record/10927
DOI: 10.1093/bioinformatics/btab691
WoS: 000743380100008

Dranenko, NO, MN Tutukina, MS Gelfand, Fyodor Kondrashov, and Olga Bochkareva. “Chromosome-Encoded IpaH Ubiquitin Ligases Indicate Non-Human Enteroinvasive Escherichia.”https://doi.org/10.1038/s41598-022-10827-3__Scientific Reports. Springer Nature, 2022.https://doi.org/10.1038/s41598-022-10827-3 .
LibreCat: https://research-explorer.ista.ac.at/record/11344
DOI: 10.1038/s41598-022-10827-3
WoS: 000788639400032
PMID: 35477739

Seferbekova, Zaira, Alexey Zabelkin, Yulia Yakovleva, Robert Afasizhev, Natalia O. Dranenko, Nikita Alexeev, Mikhail S. Gelfand, and Olga Bochkareva. “High Rates of Genome Rearrangements and Pathogenicity of Shigella Spp.”https://doi.org/10.3389/fmicb.2021.628622__Frontiers in Microbiology. Frontiers, 2021.https://doi.org/10.3389/fmicb.2021.628622 .
LibreCat: https://research-explorer.ista.ac.at/record/9380
DOI: 10.3389/fmicb.2021.628622
WoS: 000643713300001

Oshurkova, Viktoriia, Olga Troshina, Vladimir Trubitsyn, Yana Ryzhmanova, Olga Bochkareva, and Viktoria Shcherbakova. “Characterization of Methanosarcina Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation with Bacterium Sphaerochaeta Associata GLT.”https://doi.org/10.3390/ecm2020-07116__In Proceedings of 1st International Electronic Conference on Microbiology. MDPI, 2020.https://doi.org/10.3390/ecm2020-07116 .
LibreCat: https://research-explorer.ista.ac.at/record/15071
DOI: 10.3390/ecm2020-07116

Shelyakin, Pavel V., Olga Bochkareva, Anna A. Karan, and Mikhail S. Gelfand. “Micro-Evolution of Three Streptococcus Species: Selection, Antigenic Variation, and Horizontal Gene Inflow.”https://doi.org/10.1186/s12862-019-1403-6__BMC Evolutionary Biology. Springer Nature, 2019.https://doi.org/10.1186/s12862-019-1403-6 .
LibreCat: https://research-explorer.ista.ac.at/record/8263
DOI: 10.1186/s12862-019-1403-6

Sigalova, Olga, Andrei Chaplin, Olga Bochkareva, Pavel Shelyakin, Vsevolod Filaretov, Evgeny Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 11 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808772.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808772.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9731
DOI: 10.6084/m9.figshare.9808772.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 10 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808760.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808760.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9783
DOI: 10.6084/m9.figshare.9808760.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 20 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808850.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808850.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9897
DOI: 10.6084/m9.figshare.9808850.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 15 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808802.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808802.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9890
DOI: 10.6084/m9.figshare.9808802.v1

Sigalova, Olga M., Andrei V Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 16 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808814.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808814.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9892
DOI: 10.6084/m9.figshare.9808814.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 17 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808820.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808820.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9893
DOI: 10.6084/m9.figshare.9808820.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 18 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808826.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808826.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9894
DOI: 10.6084/m9.figshare.9808826.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 19 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808835.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808835.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9895
DOI: 10.6084/m9.figshare.9808835.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 1 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808841.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808841.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9896
DOI: 10.6084/m9.figshare.9808841.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.1186/s12864-019-6059-5__BMC Genomics. BioMed Central, 2019.https://doi.org/10.1186/s12864-019-6059-5 .
LibreCat: https://research-explorer.ista.ac.at/record/6898
DOI: 10.1186/s12864-019-6059-5
WoS: 000485256100001

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 21 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808859.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808859.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9898
DOI: 10.6084/m9.figshare.9808859.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 9 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808907.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808907.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9901
DOI: 10.6084/m9.figshare.9808907.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 2 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808865.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808865.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9899
DOI: 10.6084/m9.figshare.9808865.v1

Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 5 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.”https://doi.org/10.6084/m9.figshare.9808886.v1__Springer Nature, 2019.https://doi.org/10.6084/m9.figshare.9808886.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9900
DOI: 10.6084/m9.figshare.9808886.v1

Bochkareva, Olga, Elena V. Moroz, Iakov I. Davydov, and Mikhail S. Gelfand. “Genome Rearrangements and Selection in Multi-Chromosome Bacteria Burkholderia Spp.”https://doi.org/10.1186/s12864-018-5245-1__BMC Genomics. Springer Nature, 2018.https://doi.org/10.1186/s12864-018-5245-1 .
LibreCat: https://research-explorer.ista.ac.at/record/8262
DOI: 10.1186/s12864-018-5245-1

Bochkareva, Olga, Natalia O. Dranenko, Elena S. Ocheredko, German M. Kanevsky, Yaroslav N. Lozinsky, Vera A. Khalaycheva, Irena I. Artamonova, and Mikhail S. Gelfand. “Genome Rearrangements and Phylogeny Reconstruction in Yersinia Pestis.”https://doi.org/10.7717/peerj.4545__PeerJ. PeerJ, 2018.https://doi.org/10.7717/peerj.4545 .
LibreCat: https://research-explorer.ista.ac.at/record/8265
DOI: 10.7717/peerj.4545
PMID: 29607260