Yurtseven A, Buyanova S, Agrawal AAA, Bochkareva O, Kalinina OVV. 2023. Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis. BMC Microbiology. 23(1), 404.
LibreCat: https://research-explorer.ista.ac.at/record/14716
DOI: 10.1186/s12866-023-03147-7
PMID: 38124060

Zabelkin A, Yakovleva Y, Bochkareva O, Alexeev N. 2022. PaReBrick: PArallel REarrangements and BReaks identification toolkit. Bioinformatics. 38(2), 357–363.
LibreCat: https://research-explorer.ista.ac.at/record/10927
DOI: 10.1093/bioinformatics/btab691
WoS: 000743380100008

Dranenko N, Tutukina M, Gelfand M, Kondrashov F, Bochkareva O. 2022. Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia. Scientific Reports. 12, 6868.
LibreCat: https://research-explorer.ista.ac.at/record/11344
DOI: 10.1038/s41598-022-10827-3
WoS: 000788639400032
PMID: 35477739

Seferbekova Z, Zabelkin A, Yakovleva Y, Afasizhev R, Dranenko NO, Alexeev N, Gelfand MS, Bochkareva O. 2021. High rates of genome rearrangements and pathogenicity of Shigella spp. Frontiers in Microbiology. 12, 628622.
LibreCat: https://research-explorer.ista.ac.at/record/9380
DOI: 10.3389/fmicb.2021.628622
WoS: 000643713300001

Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova V. 2020. Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLT. Proceedings of 1st International Electronic Conference on Microbiology. ECM: Electronic Conference on Microbiology.
LibreCat: https://research-explorer.ista.ac.at/record/15071
DOI: 10.3390/ecm2020-07116

Shelyakin PV, Bochkareva O, Karan AA, Gelfand MS. 2019. Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow. BMC Evolutionary Biology. 19, 83.
LibreCat: https://research-explorer.ista.ac.at/record/8263
DOI: 10.1186/s12862-019-1403-6

Sigalova O, Chaplin A, Bochkareva O, Shelyakin P, Filaretov V, Akkuratov E, Burskaia V, Gelfand MS. 2019. Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808772.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9731
DOI: 10.6084/m9.figshare.9808772.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808760.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9783
DOI: 10.6084/m9.figshare.9808760.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808850.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9897
DOI: 10.6084/m9.figshare.9808850.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808802.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9890
DOI: 10.6084/m9.figshare.9808802.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808814.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9892
DOI: 10.6084/m9.figshare.9808814.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808820.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9893
DOI: 10.6084/m9.figshare.9808820.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808826.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9894
DOI: 10.6084/m9.figshare.9808826.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808835.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9895
DOI: 10.6084/m9.figshare.9808835.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 1 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808841.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9896
DOI: 10.6084/m9.figshare.9808841.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. BMC Genomics. 20(1), 710.
LibreCat: https://research-explorer.ista.ac.at/record/6898
DOI: 10.1186/s12864-019-6059-5
WoS: 000485256100001

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808859.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9898
DOI: 10.6084/m9.figshare.9808859.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808907.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9901
DOI: 10.6084/m9.figshare.9808907.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808865.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9899
DOI: 10.6084/m9.figshare.9808865.v1

Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature,10.6084/m9.figshare.9808886.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9900
DOI: 10.6084/m9.figshare.9808886.v1

Bochkareva O, Moroz EV, Davydov II, Gelfand MS. 2018. Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp. BMC Genomics. 19, 965.
LibreCat: https://research-explorer.ista.ac.at/record/8262
DOI: 10.1186/s12864-018-5245-1

Bochkareva O, Dranenko NO, Ocheredko ES, Kanevsky GM, Lozinsky YN, Khalaycheva VA, Artamonova II, Gelfand MS. 2018. Genome rearrangements and phylogeny reconstruction in Yersinia pestis. PeerJ. 6, e4545.
LibreCat: https://research-explorer.ista.ac.at/record/8265
DOI: 10.7717/peerj.4545
PMID: 29607260