Maintenance of embryonic auxin distribution for apical basal patterning by PIN FORMED dependent auxin transport in Arabidopsis
D. Weijers, M. Sauer, O. Meurette, J. Friml, K. Ljung, G. Sandberg, P. Hooykaas, R. Offringa, Plant Cell 17 (2005) 2517–2526.
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Cell polarity, auxin transport and cytoskeleton mediated division planes: Who comes first?
P. Dhonukshe, J. Kleine Vehn, J. Friml, Protoplasma 226 (2005) 67–73.
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Auxin inhibits endocytosis and promotes its own efflux from cells
T. Paciorek, E. Zaeímalová, N. Ruthardt, J. Petrásek, Y. Stierhof, J. Kleine Vehn, D. Morris, N. Emans, G. Jürgens, N. Geldner, J. Friml, Nature 435 (2005) 1251–1256.
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Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression
A. Vieten, S. Vanneste, J. Wibniewska, E. Benková, R. Benjamins, T. Beeckman, C. Luschnig, J. Friml, Development 132 (2005) 4521–4531.
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On the generic insecurity of the full domain hash
Y. Dodis, R. Oliveira, K.Z. Pietrzak, in:, Springer, 2005, pp. 449–466.
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Composition does not imply adaptive security
K.Z. Pietrzak, in:, Springer, 2005, pp. 55–65.
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Improved security analyses for CBC MACs
M. Bellare, K.Z. Pietrzak, P. Rogaway, in:, Springer, 2005, pp. 527–545.
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Robust formation of morphogen gradients
M.T. Bollenbach, K. Kruse, P. Pantazis, M. González Gaitán, F. Jülicher, Physical Review Letters 94 (2005).
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Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations
T. Klausberger, L. Marton, J. O’Neill, J. Huck, Y. Dalezios, P. Fuentealba, W. Suen, E. Papp, T. Kaneko, M. Watanabe, J.L. Csicsvari, P. Somogyi, Journal of Neuroscience 25 (2005) 9782–9793.
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Surface tiling with differential topology
H. Edelsbrunner, in:, ACM, 2005, pp. 9–11.
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Cleavage and gastrulation in zebrafish embryos
M. Köppen, C.-P.J. Heisenberg, in:, Encyclopedia of Life Sciences, Wiley-Blackwell, 2005.
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Cell migration during zebrafish gastrulation
I. Castanon Ortega, C.-P.J. Heisenberg, in:, D. Wedlich (Ed.), Cell Migration in Development and Disease, Wiley-VCH, 2005, pp. 71–105.
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A stern view of gastrulation
I. Castanon Ortega, C.-P.J. Heisenberg, Nature Cell Biology 7 (2005) 19–19.
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Document image dewarping using robust estimation of curled text lines
A. Ulges, C. Lampert, T. Breuel, in:, IEEE, 2005, pp. 1001–1005.
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Oblivious document capture and real-time retrieval
C. Lampert, T. Braun, A. Ulges, D. Keysers, T. Breuel, in:, CBDAR, 2005, pp. 79–86.
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 receptors inhibit both strength and plasticity of glutamatergic synaptic neurotransmission in the rat prefrontal cortex.
J. Guzmán, Z. Gerevich, J. Hengstler, P. Illes, W. Kleemann, Synapse 57 (2005) 235–238.
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Real-time RNA profiling within a single bacterium
T. Le, S. Harlepp, C.C. Guet, K. Dittmar, T. Emonet, T. Pan, P. Cluzel, PNAS 102 (2005) 9160–9164.
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Controllable motion synthesis in a gaseous medium
L. Shi, Y. Yu, C. Wojtan, S. Chenney, The Visual Computer 21 (2005) 474–487.
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Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse (Review)
S. Hefft, P.M. Jonas, Nature Neuroscience 8 (2005) 1319–28.
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Complexity of compositional model checking of computation tree logic on simple structures
K. Chatterjee, P. Dasgupta, P. Chakrabarti, in:, Springer, 2005, pp. 89–102.
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Two-player nonzero-sum <9-regular games
K. Chatterjee, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 413–427.
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Sexual cooperation: mating increases longevity in ant queens
A. Schrempf, J. Heinze, S. Cremer, Current Biology 15 (2005) 267–270.
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Primary sex ratio adjustment by ant queens in response to local mate competition
L. De Menten, S. Cremer, J. Heinze, S. Aron, Animal Behaviour 69 (2005) 1031–1035.
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Monorail/Fox regulates floorplate differentiation and specification of oligodendrocytes, serotonergic raphe neurones and cranial motoneurones
W. Norton, M. Mangoli, Z. Lele, H. Pogoda, B. Diamond, S. Mercurio, C. Russell, H. Teraoka, H. Stickney, G. Rauch, C.-P.J. Heisenberg, C. Houart, T. Schilling, H. Frohnhoefer, S. Rastegar, C. Neumann, R.M. Gardiner, U. Strähle, R. Geisler, M. Rees, W. Talbot, S. Wilson, Development 132 (2005) 645–658.
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Misshapen mediates actin-based cell contraction during zebrafish epiboly and Drosophila dorsal closure
M. Köppen, B. Fernández, L. Carvalho, A. Jacinto, C.-P.J. Heisenberg, Mechanisms of Development 122 (2005) 2–3.
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Boolean Heaps
A. Podelski, T. Wies, in:, Springer, 2005, pp. 267–282.
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A developmental switch in the response of DRG neurons to ETS transcription factor signaling
S. Hippenmeyer, E. Vrieseling, M. Sigrist, T. Portmann, C. Laengle, D. Ladle, S. Arber, PLoS Biology 3 (2005) 0878–0890.
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Conformational changes in the Ar 3 complex leading to actin nucleation
A. Rodal, O. Sokolova, D. Robins, K. Daugherty, S. Hippenmeyer, H. Riezman, N. Grigorieff, B. Goode, Nature Structural and Molecular Biology 12 (2005) 26–31.
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Digital tapestry
C. Rother, S. Kumar, V. Kolmogorov, A. Blake, in:, IEEE, 2005, pp. 589–596.
LibreCat: https://research-explorer.ista.ac.at/record/3175
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Bi-layer segmentation of binocular stereo video
V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, C. Rother, in:, IEEE, 2005, pp. 1186–1186.
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Bi-layer segmentation of binocular stereo video
V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, C. Rother, in:, IEEE, 2005, pp. 407–414.
LibreCat: https://research-explorer.ista.ac.at/record/3183
DOI: 10.1109/CVPR.2005.91

What metrics can be approximated by geo cuts or global optimization of length area and flux
V. Kolmogorov, Y. Boykov, in:, IEEE, 2005, pp. 564–571.
LibreCat: https://research-explorer.ista.ac.at/record/3182
DOI: 10.1109/ICCV.2005.252

On the optimality of tree reweighted max product message passing
V. Kolmogorov, M. Wainwright, in:, AUAI Press, 2005, pp. 316–323.
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Automated alignment and pattern recognition of single-molecule force spectroscopy data
M. Kuhn, H.L. Janovjak, M. Hubain, D. Mueller, Journal of Microscopy 218 (2005) 125–132.
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DOI: 10.1111/j.1365-2818.2005.01478.x

Complex stability of single proteins explored by forced unfolding experiments
H.L. Janovjak, T. Sapra, D. Mueller, Biophysical Journal 88 (2005) 37–39.
LibreCat: https://research-explorer.ista.ac.at/record/3416
DOI: 10.1529/biophysj.105.059774

Hydrodynamic effects in fast AFM single molecule force measurements
H.L. Janovjak, J. Struckmeier, D. Mueller, European Biophysics Journal 34 (2005) 91–96.
LibreCat: https://research-explorer.ista.ac.at/record/3418
DOI: 10.1007/s00249-004-0430-3

Posterior mapping and posterior predictive distributions
J.P. Bollback, in:, R. Nielsen (Ed.), Statistical Methods in Molecular Evolution, Springer, 2005, pp. 439–462.
LibreCat: https://research-explorer.ista.ac.at/record/3433
DOI: 10.1007/0-387-27733-1

Methods, apparatus and computer program products for modeling three-dimensional colored objects
S. Williams, H. Edelsbrunner, P. Fu, (2005).
LibreCat: https://research-explorer.ista.ac.at/record/3509

Extraction and simplification of iso-surfaces in tandem
D. Attali, D. Cohen Steiner, H. Edelsbrunner, in:, ACM, 2005, pp. 139–148.
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The geometry of biomolecular solvation
H. Edelsbrunner, P. Koehl, in:, Combinatorial and Computational Geometry, Cambridge University Press, 2005, pp. 243–275.
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Speciation and gene flow between snails of opposing chirality
A. Davison, S. Chiba, N.H. Barton, B. Clarke, PLoS Biology 3 (2005).
LibreCat: https://research-explorer.ista.ac.at/record/3612
DOI: 10.1371/journal.pbio.0030282

Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes
B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.
LibreCat: https://research-explorer.ista.ac.at/record/3611
DOI: 10.1038/sj.hdy.6800607

Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns
M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571.
LibreCat: https://research-explorer.ista.ac.at/record/3613
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Boundary regularity of admissible operators
C. Lampert, Publicacions Matemàtiques 49 (2005) 179–195.
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Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins
H.L. Janovjak, D. Mueller, A. Humphris, Biophysical Journal 88 (2005) 1423–1431.
LibreCat: https://research-explorer.ista.ac.at/record/3721
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Information-based clustering
N. Slonim, G. Atwal, G. Tkadik, W. Bialek, PNAS 102 (2005) 18297–18302.
LibreCat: https://research-explorer.ista.ac.at/record/3741
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Estimating mutual information and multi-information in large networks
N. Slonim, G. Atwal, G. Tkadik, W. Bialek, ArXiv (2005) 1–11.
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Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons
D. Engel, P.M. Jonas, Neuron 45 (2005) 405–17.
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DOI: 10.1016/j.neuron.2004.12.048 

Games with secure equilibria
K. Chatterjee, T.A. Henzinger, M. Jurdziski, in:, Springer, 2005, pp. 141–161.
LibreCat: https://research-explorer.ista.ac.at/record/3892
DOI: 10.1007/11561163_7

The drawback of mobility: invasive species in a globalised world
S. Cremer, J. Boomsma, in:, Elsevier, 2005.
LibreCat: https://research-explorer.ista.ac.at/record/3902

The conduit system transports soluble antigens from the afferent lymph to resident dendritic cells in the T cell area of the lymph node
M.K. Sixt, N. Kanazawa, M. Selg, T. Samson, G. Roos, D. Reinhardt, R. Pabst, M. Lutz, L. Sorokin, Immunity 22 (2005) 19–29.
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Experimental validation of the docking orientation of Cd with its Cdk2-CycA protein substrate
J. Sohn, J. Parks, G. Buhrman, P. Brown, K. Kristjánsdóttir, A. Safi, H. Edelsbrunner, W. Yang, J. Rudolph, Biochemistry 44 (2005) 16563–16573.
LibreCat: https://research-explorer.ista.ac.at/record/3983
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Coarse and reliable geometric alignment for protein docking
Y. Wang, P. Agarwal, P. Brown, H. Edelsbrunner, J. Rudolph, in:, World Scientific Publishing, 2005, pp. 64–75.
LibreCat: https://research-explorer.ista.ac.at/record/3982
DOI: 10.1142/9789812702456_0007

Wn functions in gastrulation by controlling cell cohesion through Rac and E-cadherin
F. Ulrich, M. Krieg, E. Schötz, V. Link, I. Castanon, V. Schnabel, A. Taubenberger, D. Müller, P. Puech, C.-P.J. Heisenberg, Developmental Cell 9 (2005) 555–564.
LibreCat: https://research-explorer.ista.ac.at/record/4144
DOI: 10.1016/j.devcel.2005.08.011

The limitations of adaptive dynamics as a model of evolution
N.H. Barton, J. Polechova, Journal of Evolutionary Biology 18 (2005) 1186–1190.
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DOI: 10.1111/j.1420-9101.2005.00943.x

Measuring cell adhesion forces of primary gastrulating cells from zebrafish using atomic force microscopy
P. Puech, A. Taubenberger, F. Ulrich, M. Krieg, D. Mueller, C.-P.J. Heisenberg, Journal of Cell Science 118 (2005) 4199–4206.
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Shield formation at the onset of zebrafish gastrulation
J. Montero, L. Carvalho, M. Wilsch Bräuninger, B. Kilian, C. Mustafa, C.-P.J. Heisenberg, Development 132 (2005) 1187–1198.
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Speciation through competition: A critical review
J. Polechova, N.H. Barton, Evolution; International Journal of Organic Evolution 59 (2005) 1194–1210.
LibreCat: https://research-explorer.ista.ac.at/record/4249
DOI: 10.1111/j.0014-3820.2005.tb01771.x

Evolution of recombination due to random drift
N.H. Barton, S. Otto, Genetics 169 (2005) 2353–2370.
LibreCat: https://research-explorer.ista.ac.at/record/4251
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Theoretical models of selection and mutationon quantitative traits
T. Johnson, N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360 (2005) 1411–1425.
LibreCat: https://research-explorer.ista.ac.at/record/4252
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Synthesis of interface specifications for Java classes
R. Alur, P. Cerny, P. Madhusudan, W. Nam, in:, ACM, 2005, pp. 98–109.
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Trading end-to-end latency for composability
S. Matic, T.A. Henzinger, in:, IEEE, 2005, pp. 99–110.
LibreCat: https://research-explorer.ista.ac.at/record/4412
DOI: 10.1109/RTSS.2005.43

A programmable microkernel for real-time systems
C. Kirsch, M. Sanvido, T.A. Henzinger, in:, ACM, 2005, pp. 35–45.
LibreCat: https://research-explorer.ista.ac.at/record/4418
DOI: 10.1145/1064979.1064986

A classification of symbolic transition systems
T.A. Henzinger, R. Majumdar, J. Raskin, ACM Transactions on Computational Logic (TOCL) 6 (2005) 1–32.
LibreCat: https://research-explorer.ista.ac.at/record/4454
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Quantifying similarities between timed systems
T.A. Henzinger, R. Majumdar, V. Prabhu, in:, Springer, 2005, pp. 226–241.
LibreCat: https://research-explorer.ista.ac.at/record/4455
DOI: 10.1007/11603009_18

Permissive interfaces
T.A. Henzinger, R. Jhala, R. Majumdar, in:, ACM, 2005, pp. 31–40.
LibreCat: https://research-explorer.ista.ac.at/record/4456
DOI: 10.1145/1081706.1081713

Composable code generation for distributed Giotto
T.A. Henzinger, C. Kirsch, S. Matic, in:, ACM, 2005, pp. 21–30.
LibreCat: https://research-explorer.ista.ac.at/record/4457
DOI: 10.1145/1065910.1065914

Automatic rectangular refinement of affine hybrid systems
L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2005, pp. 144–161.
LibreCat: https://research-explorer.ista.ac.at/record/4536
DOI: DOI: 10.1007/11603009_13

Semiperfect-information games
K. Chatterjee, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 1–18.
LibreCat: https://research-explorer.ista.ac.at/record/4541
DOI: 10.1007/11590156_1

The complexity of stochastic Rabin and Streett games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 878–890.
LibreCat: https://research-explorer.ista.ac.at/record/4553
DOI: 10.1007/11523468_71

Mean-payoff parity games
K. Chatterjee, T.A. Henzinger, M. Jurdziski, in:, IEEE, 2005, pp. 178–187.
LibreCat: https://research-explorer.ista.ac.at/record/4554
DOI: 10.1109/LICS.2005.26

Verifying quantitative properties using bound functions
A. Chakrabarti, K. Chatterjee, T.A. Henzinger, O. Kupferman, R. Majumdar, in:, Springer, 2005, pp. 50–64.
LibreCat: https://research-explorer.ista.ac.at/record/4560
DOI: 10.1007/11560548_7

Counterexample-guided planning
K. Chatterjee, T.A. Henzinger, R. Jhala, R. Majumdar, in:, AUAI Press, 2005, pp. 104–111.
LibreCat: https://research-explorer.ista.ac.at/record/4557

Checking memory safety with BLAST
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer, 2005, pp. 2–18.
LibreCat: https://research-explorer.ista.ac.at/record/4579
DOI: 10.1007/978-3-540-31984-9_2

Web service interfaces
D. Beyer, A. Chakrabarti, T.A. Henzinger, in:, ACM, 2005, pp. 148–159.
LibreCat: https://research-explorer.ista.ac.at/record/4576
DOI: 10.1145/1060745.1060770

Model checking discounted temporal properties
L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, Theoretical Computer Science 345 (2005) 139–170.
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Interface-based design
L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 83–104.
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DOI: 10.1007/1-4020-3532-2_3

Counterfactual quantum computation
O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, in:, IEEE, 2005, pp. 365–367.
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Neuronal substrates of complex behaviors in C. elegans
M. de Bono, A. Villu Maricq, Annual Review of Neuroscience 28 (2005) 451–501.
LibreCat: https://research-explorer.ista.ac.at/record/6153
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PMID: 16022603

Experience-dependent modulation of C. elegans behavior by ambient oxygen
B.H.H. Cheung, M. Cohen, C. Rogers, O. Albayram, M. de Bono, Current Biology 15 (2005) 905–917.
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Signal propagation and logic gating in networks of integrate-and-fire neurons
T.P. Vogels, L.F. Abbott, Journal of Neuroscience 25 (2005) 10786–10795.
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Neural network dynamics
T.P. Vogels, K. Rajan, L.F. Abbott, Annual Review of Neuroscience 28 (2005) 357–376.
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DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
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Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
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Distribution of the strength of selection against amino acid replacements in human proteins
L. Yampolsky, F. Kondrashov, A. Kondrashov, Human Molecular Genetics 14 (2005) 3191–3201.
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SOFAST-HMQC experiments for recording two-dimensional deteronuclear correlation spectra of proteins within a few seconds
P. Schanda, . Kupde, B. Brutscher, Journal of Biomolecular NMR 33 (2005) 199–211.
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Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds
P. Schanda, B. Brutscher, Journal of the American Chemical Society 127 (2005) 8014–8015.
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On diffusion in high-dimensional Hamiltonian systems
J. Bourgain, V. Kaloshin, Journal of Functional Analysis 229 (2005) 1–61.
LibreCat: https://research-explorer.ista.ac.at/record/8516
DOI: 10.1016/j.jfa.2004.09.006

The analysis of monomer sequences in protein and tRNA and the manifestation of the compensation of pathogenic deviations in their evolution
F. Kondrashov, Biofizika 50 (2005) 389–395.
LibreCat: https://research-explorer.ista.ac.at/record/877
PMID: 15977826

In search of the limits of evolution
F. Kondrashov, Nature Genetics 37 (2005) 9–10.
LibreCat: https://research-explorer.ista.ac.at/record/878
DOI: 10.1038/ng0105-9

Prediction of pathogenic mutations in mitochondrially encoded human tRNAs
F. Kondrashov, Human Molecular Genetics 14 (2005) 2415–2419.
LibreCat: https://research-explorer.ista.ac.at/record/882
DOI: 10.1093/hmg/ddi243

The convergent evolution of the secondary structure of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus
F. Kondrashov, Biofizika 50 (2005) 396–403.
LibreCat: https://research-explorer.ista.ac.at/record/880
PMID: 15977827

A universal trend of amino acid gain and loss in protein evolution
I. Jordan, F. Kondrashov, I. Adzhube0, Y. Wolf, E. Koonin, A. Kondrashov, S. Sunyaev, Nature 433 (2005) 633–638.
LibreCat: https://research-explorer.ista.ac.at/record/893
DOI: 10.1038/nature03306

Epigenetic inheritance in Arabidopsis: Selective silence
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
LibreCat: https://research-explorer.ista.ac.at/record/9529
DOI: 10.1016/j.gde.2005.07.002
PMID: 16085410

Cutting into solids with micropatterned gels
S.K. Smoukov, K.J.M. Bishop, R. Klajn, C.J. Campbell, B.A. Grzybowski, Advanced Materials 17 (2005) 1361–1365.
LibreCat: https://research-explorer.ista.ac.at/record/13431
DOI: 10.1002/adma.200402086
PMID: 34412440

Applications, properties and synthesis of w-functionalized n-alkanethiols and disulfides - the building blocks of self-assembled monolayers
D. Witt, R. Klajn, P. Barski, B. Grzybowski, Current Organic Chemistry 8 (2005) 1763–1797.
LibreCat: https://research-explorer.ista.ac.at/record/13433
DOI: 10.2174/1385272043369421

One-step multilevel microfabrication by reactiondiffusion
C.J. Campbell, R. Klajn, M. Fialkowski, B.A. Grzybowski, Langmuir 21 (2005) 418–423.
LibreCat: https://research-explorer.ista.ac.at/record/13432
DOI: 10.1021/la0487747
PMID: 15620333