Blaschko M, Lampert C, Bartels A. Semi-Supervised Analysis of Human FMRI Data. Berlin Institute of Technology; 2009.

Blaschko M, Lampert C. Object localization with global and local context kernels. In: BMVA Press; 2009:1-11. doi:10.5244/C.23.63

Lampert C, Nickisch H, Harmeling S. Learning to detect unseen object classes by between-class attribute transfer. In: IEEE; 2009:951-958. doi:10.1109/CVPR.2009.5206594

Lampert C, Peters J. Active structured learning for high-speed object detection. In: Vol 5748. Springer; 2009:221-231. doi:10.1007/978-3-642-03798-6_23

Lampert C, Peters J. A High-Speed Object Tracker from off-the-Shelf Components. IEEE; 2009.

Tkadik G, Walczak A, Bialek W. Optimizing information flow in small genetic networks. Physical Review E Statistical Nonlinear and Soft Matter Physics. 2009;80(3). doi:10.1103/PhysRevE.80.031920

Kryazhimskiy S, Tkadik G, Plotkin J. The dynamics of adaptation on correlated fitness landscapes. PNAS. 2009;106(44):18638-18643. doi:10.1073/pnas.0905497106

Tkadik G, Schneidman E, Berry M, Bialek W. Spin glass models for a network of real neurons. ArXiv. 2009;q-NC.

Tkadik G, Bialek W. Cell Biology: Networks, regulation, pathways. In: Meyers R, ed. Encyclopedia of Complexity and Systems Science. Springer; 2009:719-741. doi:10.1007/978-0-387-30440-3_48

Wojtan C, Thürey N, Gross M, Turk G. Deforming meshes that split and merge. ACM Transactions on Graphics. 2009;28(3). doi:10.1145/1531326.1531382

Kupczok A, Von Haeseler A. Comment on “A congruence index for testing topological similarity between trees”. Bioinformatics. 2009;25(1):147-149. doi:4199

Davison A, Barton NH, Clarke B. The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails. Journal of Evolutionary Biology. 2009;22(8):1624-1635. doi:10.1111/j.1420-9101.2009.01770.x

Schwenk J, Harmel N, Zolles G, et al. Functional proteomics identify cornichon proteins as auxiliary subunits of AMPA receptors. Science. 2009;323(5919):1313-1319. doi:10.1126/science.1167852

Didier F, Henzinger TA, Mateescu M, Wolf V. Fast adaptive uniformization of the chemical master equation. In: Vol 4. IEEE; 2009:118-127. doi:10.1109/HiBi.2009.23

Henzinger TA, Jobstmann B, Wolf V. Formalisms for specifying Markovian population models. In: Vol 5797. Springer; 2009:3-23. doi:10.1007/978-3-642-04420-5_2

Henzinger TA, Kirsch C, Marques E, Sokolova A. Distributed, modular HTL. In: IEEE; 2009:171-180. doi:10.1109/RTSS.2009.9

Chatterjee K, Doyen L, Henzinger TA. Probabilistic weighted automata. In: Vol 5710. Springer; 2009:244-258. doi:10.1007/978-3-642-04081-8_17

Chatterjee K, Henzinger TA, Horn F. Finitary winning in omega-regular games. ACM Transactions on Computational Logic (TOCL). 2009;11(1). doi:10.1145/1614431.1614432

Chatterjee K, De Alfaro L, Faella M, Legay A. Qualitative logics and equivalences for probabilistic systems. Logical Methods in Computer Science. 2009;5(2). doi:10.2168/LMCS-5(2:7)2009

Cremer S, Sixt MK. Analogies in the evolution of individual and social immunity. Philosophical Transactions of the Royal Society of London Series B, Biological Sciences. 2009;364(1513):129-142. doi:10.1098/rstb.2008.0166

Lämmermann T, Renkawitz J, Wu X, Hirsch K, Brakebusch C, Sixt MK. Cd-dependent leading edge coordination is essential for interstitial dendritic cell migration (Plenary Paper). Blood. 2009;113(23):5703-5710. doi:10.1182/blood-2008-11-191882

Bauer M, Brakebusch C, Coisne C, et al. ;21 integrins differentially control extravasation of inflammatory cell subsets into the CNS during autoimmunity. PNAS. 2009;106(6):1920-1925. doi:10.1073/pnas.0808909106

Quast T, Tappertzhofen B, Schild C, et al. Cytohesin-1 controls the activation of RhoA and modulates integrin-dependent adhesion and migration of dendritic cells. Blood. 2009;113(23):5801-5810. doi:10.1182/blood-2008-08-176123

Polechova J, Barton NH, Marion G. Species’ range: Adaptation in space and time. American Naturalist. 2009;174(5):6-4. doi:10.1086/605958

Soete G, Heisenberg C-PJ. The role of the extracellular matrix in Kupffer’s vesicle formation in zebrafish. Mechanisms of Development. 2009;126:8-8. doi:10.1016/j.mod.2009.06.391

Oates A, Gorfinkiel N, Gonzalez Gaitan M, Heisenberg C-PJ. Quantitative approaches in developmental biology. Nature Reviews Genetics. 2009;10(8):517-530. doi:10.1038/nrg2548

Kai M, Buchan N, Heisenberg C-PJ, Tada M. Regulation of planar cell polarity signalling by the prenylation pathway. Mechanisms of Development. 2009;126(Supplement 1):2-2. doi:10.1016/j.mod.2009.06.269

Swoboda J, Meredith T, Campbell J, et al. Discovery of a Small Molecule that Blocks Wall Teichoic Acid Biosynthesis in Staphylococcus aureus. ACS Chemical Biology. 2009;4(10):875-883. doi:10.1021/cb900151k

Bollenbach T, Quan S, Chait RP, Kishony R. Nonoptimal Microbial Response to Antibiotics Underlies Suppressive Drug Interactions. Cell. 2009;139(4):707-718. doi:10.1016/j.cell.2009.10.025

Barton NH, De Cara M. The evolution of strong reproductive isolation. Evolution; International Journal of Organic Evolution. 2009;63(5):1171-1190. doi:10.1111/j.1558-5646.2009.00622.x

Seghir M, Podelski A, Wies T. Abstraction Refinement for Quantified Array Assertions. In: Springer; 2009:3-18. doi:1556

Titapiwatanakun B, Blakeslee J, Bandyopadhyay A, et al. ABC PG stabilises PIN1 in membrane microdomains in Arabidopsis. Plant Journal. 2009;57(1):27-44. doi:10.1111/j.1365-313X.2008.03668.x

Pernisová M, Klíma P, Horák J, et al. Cytokinins modulate auxin induced organogenesis in plants via regulation of the auxin efflux. PNAS. 2009;106(9):3609-3614. doi:10.1073/pnas.0811539106

Rfeidka K, Simásková M, Duclercq J, et al. Cytokinin regulates root meristem activity via modulation of the polar auxin transport. PNAS. 2009;106(11):4284-4289. doi:10.1073/pnas.0900060106

Tanaka H, Kitakura S, De Rycke R, De Groodt R, Friml J. Fluorescence imaging based screen identifies ARF GEF component of early endosomal trafficking. Current Biology. 2009;19(5):391-397. doi:10.1016/j.cub.2009.01.057

Robert H, Friml J. Auxin and other signals on the move in plants. Nature Chemical Biology. 2009;5(5):325-332. doi:10.1038/nchembio.170

Vanneste S, Friml J. Auxin: A trigger for change in plant development. Cell. 2009;136(6):1005-1016. doi:10.1016/j.cell.2009.03.001

Weijers D, Friml J. SnapShot: Auxin signaling and transport. Cell. 2009;136(6):1172-1172. doi:10.1016/j.cell.2009.03.009

Benková E, Ivanchenko M, Friml J, Shishkova S, Dubrovsky J. A morphogenetic trigger: Is there an emerging concept in plant developmental biology? Trends in Plant Science. 2009;14(4):189-193. doi:10.1016/j.tplants.2009.01.006

Kumar MP, Kolmogorov V, Torr P. An analysis of convex relaxations for MAP estimation of discrete MRFs. Journal of Machine Learning Research. 2009;10:71-106.

Vicente S, Kolmogorov V, Rother C. Joint optimization of segmentation and appearance models. In: IEEE; 2009:755-762. doi:10.1109/ICCV.2009.5459287

Kolmogorov V, Shioura A. New algorithms for convex cost tension problem with application to computer vision. Discrete Optimization. 2009;6(4):378-393. doi:10.1016/j.disopt.2009.04.006

Engel J, Schmalhorst PS, Dörk Bousset T, Ferrières V, Routier F. A single UDP galactofuranose transporter is required for galactofuranosylation in Aspergillus fumigatus. Journal of Biological Chemistry. 2009;284(49):33859-33868. doi:10.1074/jbc.M109.070219 

Chakraborty Tuhin S, Goswami S, Siddiqi O. Sensory correlates of imaginal conditioning in Drosophila melanogaster. Journal of Neurogenetics. 2009;23(1-2):210-219. doi:10.1080/01677060802491559 

Uhler C. Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard. Journal of Agricultural Biological and Environmental Statistics. 2009;14(1):79-98. doi:10.1198/jabes.2009.0005

Schmalhorst PS. Biosynthesis of Galactofuranose Containing Glycans and Their Relevance for the Pathogenic Fungus Aspergillus fumigatus. 2009:1-72.

Bollenbach MT, Kishony R. Quiet gene circuit more fragile than its noisy peer. Cell. 2009;139(3):460-461. doi:10.1016/j.cell.2009.10.005

Remy S, Csicsvari JL, Beck H. Activity-dependent control of neuronal output by local and global dendritic spike attenuation. Neuron. 2009;61(6):906-916. doi:10.1016/j.neuron.2009.01.032

Attali D, Boissonnat J, Edelsbrunner H. Stability and computation of medial axes: a state-of-the-art report. In: Mathematical Foundations of Scientific Visualization, Computer Graphics, and Massive Data Exploration. Springer; 2009:109-125. doi:10.1007/b106657_6

Barton NH. Why sex and recombination? . In: Cold Spring Harbor Symposia on Quantitative Biology. Vol 74. Cold Spring Harbor Laboratory Press; 2009:187-195. doi:10.1101/sqb.2009.74.030

Lampert C, Blaschko M. Structured prediction by joint kernel support estimation. Machine Learning. 2009;77(2-3):249-269. doi:10.1007/s10994-009-5111-0

Dhillon P, Nowozin S, Lampert C. Combining appearance and motion for human action classification in videos. In: IEEE; 2009:22-29. doi:10.1109/CVPRW.2009.5204237

Lampert C, Blaschko M, Hofmann T. Efficient subwindow search: A branch and bound framework for object localization. IEEE Transactions on Pattern Analysis and Machine Intelligence. 2009;31(12):2129-2142. doi:10.1109/TPAMI.2009.144

Dhillon P, Nowozin S, Lampert C. Combining appearance and motion for human action classification in videos. In: IEEE; 2009:22-29. doi:10.1109/CVPRW.2009.5204237

Lampert C. Kernel Methods in Computer Vision. Vol 4. now publishers; 2009. doi:10.1561/0600000027

Nowozin S, Lampert C. Global connectivity potentials for random field models. In: IEEE; 2009:818-825. doi:10.1109/CVPR.2009.5206567

Lampert C. Detecting objects in large image collections and videos by efficient subimage retrieval. In: IEEE; 2009:987-994. doi:10.1109/ICCV.2009.5459359

Tkadik G, Bialek W. Diffusion, dimensionality, and noise in transcriptional regulation. Physical Review E Statistical Nonlinear and Soft Matter Physics. 2009;79(5). doi:10.1103/PhysRevE.79.051901

Barton NH, Coe J. On the application of statistical physics to evolutionary biology. Journal of Theoretical Biology. 2009;259(2):317-324. doi:10.1016/j.jtbi.2009.03.019

Tripakis S, Lickly B, Henzinger TA, Lee E. On relational interfaces. In: EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software. ACM; 2009:67-76. doi:10.1145/1629335.1629346

Bloem R, Greimel K, Henzinger TA, Jobstmann B. Synthesizing robust systems. In: Springer; 2009:85-92. doi:10.1109/FMCAD.2009.5351139

Renkawitz J, Schumann K, Weber M, et al. Adaptive force transmission in amoeboid cell migration. Nature Cell Biology. 2009;11(12):1438-1443. doi:10.1038/ncb1992

Schymeinsky J, Gerstl R, Mannigel I, et al. A fundamental role of mAb in neutrophils: impact on ;2(2) integrin-mediated phagocytosis and adhesion in vivo. Blood. 2009;114(19):4209-4220. doi:10.1182/blood-2009-02-206169

Wolf A, Eller K, Zeiser R, et al. The sphingosine 1-phosphate receptor agonist F potently inhibits regulatory T cell proliferation in vitro and in vivo. Journal of Immunology. 2009;183(6):3751-3760. doi:10.4049/jimmunol.0901011

Pflicke H, Sixt MK. Preformed portals facilitate dendritic cell entry into afferent lymphatic vessels. The Journal of Experimental Medicine. 2009;206(13):2925-2935. doi:10.1084/jem.20091739

Moser M, Bauer M, Schmid S, et al. Kindlin-3 is required for ;22 integrin-mediated leukocyte adhesion to endothelial cells. Nature Medicine. 2009;15(3):300-305. doi:10.1038/nm.1921

Lämmermann T, Sixt MK. Mechanical modes of “amoeboid”10.1016/j.ceb.2009.05.003__cell migration. Current Opinion in Cell Biology. 2009;21(5):636-644. doi:10.1016/j.ceb.2009.05.003

Edelsbrunner H, Harer J. The persistent Morse complex segmentation of a 3-manifold. In: Vol 5903. Springer; 2009:36-50. doi:10.1007/978-3-642-10470-1_4

Cohen Steiner D, Edelsbrunner H, Harer J. Extending persistence using Poincare and Lefschetz duality. Foundations of Computational Mathematics. 2009;9(1):79-103. doi:10.1007/s10208-008-9027-z

Cohen Steiner D, Edelsbrunner H, Harer J, Morozov D. Persistent homology for kernels, images, and cokernels. In: SIAM; 2009:1011-1020.

Ulrich F, Heisenberg C-PJ. Trafficking and cell migration. Traffic. 2009;10(7):811-818. doi:10.1111/j.1600-0854.2009.00929.x

Oteíza P, Lemus C, Köppen M, et al. Linking organ formation to left-right patterning in the embryonic zebrafish. Mechanisms of Development. 2009;126(Supplement 1):-. doi:10.1016/j.mod.2009.06.970

Oteíza P, Köppen M, Krieg M, et al. Wnt11/Pk1a-mediated planar cell polarity signalling orchestrates epithelial organ morphogenesis by regulating N-cadherin dependent cell adhesion forces. Mechanisms of Development. 2009;126(Supplement 1):-. doi:10.1016/j.mod.2009.06.098

Paluch E, Heisenberg C-PJ. Biology and physics of cell shape changes in development. Current Biology. 2009;19(17):0-9. doi:10.1016/j.cub.2009.07.029

Paluch E, Heisenberg C-PJ. Chaos begets order: Asynchronous cell contractions drive epithelial morphogenesis. Developmental Cell. 2009;16(1):4-6. doi:10.1016/j.devcel.2008.12.011

Heisenberg C-PJ. Dorsal closure in Drosophila: cells cannot get out of the tight spot. Bioessaysf: News and Reviews in Molecular, Cellular and Developmental Biology. 2009;31(12):1284-1287. doi:10.1002/bies.200900109

Carvalho L, Stuehmer J, Bois J, Kalaidzidis Y, Lecaudey V, Heisenberg C-PJ. Control of convergent yolk syncytial layer nuclear movement in zebrafish. Development. 2009;136(8):1305-1315. doi:10.1242/dev.026922

Barton NH, De Vladar H. Statistical mechanics and the evolution of polygenic quantitative traits. Genetics. 2009;181(3):997-1011. doi:10.1534/genetics.108.099309

de Vladar H. Stochasticity and Variability in the dynamics and genetics of populations. 2009. doi:3811

Bollback JP, Huelsenbeck J. Parallel genetic evolution within and between bacteriophage species of varying degrees of divergence. Genetics. 2009;181(1):225-234. doi:10.1534/genetics.107.085225

Wies T, Piskac R, Kuncak V. Combining Theories with Shared Set Operations. In: Springer; 2009:366-382. doi:1558

Singh V. Formalizing and Verifying Transactional Memories. Formalizing and Verifying Transactional Memories. 2009.

Lahiri S, Qadeer S, Galeotti J, Voung J, Wies T. Intra-module Inference. In: Springer; 2009:493-508. doi:1555

Hoenicke J, Leino KR, Podelski A, Schäf M, Wies T. It’s Doomed; We Can Prove It. In: Springer; 2009:338-353. doi:1557

Guerraoui R, Henzinger TA, Singh V. Software transactional memory on relaxed memory models. In: Vol 5643. Springer; 2009:321-336. doi:10.1007/978-3-642-02658-4_26

Dragojevic A, Guerraoui R, Singh A, Singh V. Preventing versus curing: avoiding conflicts in transactional memories. In: ACM; 2009:7-16. doi:1533

Lublinerman R, Chaudhuri S, Cerny P. Parallel programming with object assemblies. In: ACM; 2009:61-80. doi:1546

Cerny P, Alur R. Automated Analysis of Java Methods for Confidentiality. In: Springer; 2009:173-187. doi:1548

Alur R, Cerny P, Weinstein S. Algorithmic analysis of array-accessing programs. In: Vol 5771. Springer; 2009:86-101. doi:10.1007/978-3-642-04027-6_9

Henzinger TA, Mateescu M, Wolf V. Sliding-window abstraction for infinite Markov chains. In: Vol 5643. Springer; 2009:337-352. doi:10.1007/978-3-642-02658-4_27

Didier F, Henzinger TA, Mateescu M, Wolf V. Approximation of event probabilities in noisy cellular processes. In: Vol 5688. Springer; 2009:173-188. doi:10.1007/978-3-642-03845-7_12

Chatterjee K, Doyen L, Henzinger TA. Alternating weighted automata. In: Vol 5699. Springer; 2009:3-13. doi:10.1007/978-3-642-03409-1_2

Chatterjee K, Doyen L, Henzinger TA. A survey of stochastic games with limsup and liminf objectives. In: Vol 5556. Springer; 2009:1-15. doi:10.1007/978-3-642-02930-1_1

Chatterjee K, Henzinger TA, Horn F. Stochastic games with finitary objectives. In: Vol 5734. Springer; 2009:34-54. doi:10.1007/978-3-642-03816-7_4

Chatterjee K, De Alfaro L, Henzinger TA. Termination criteria for solving concurrent safety and reachability games. In: SIAM; 2009:197-206. doi:10.1137/1.9781611973068.23

Chatterjee K, Doyen L, Henzinger TA. Expressiveness and closure properties for quantitative languages. In: IEEE; 2009:199-208. doi:10.1109/LICS.2009.16

Bloem R, Chatterjee K, Henzinger TA, Jobstmann B. Better quality in synthesis through quantitative objectives. In: Vol 5643. Springer; 2009:140-156. doi:10.1007/978-3-642-02658-4_14

Berwanger D, Chatterjee K, De Wulf M, Doyen L, Henzinger TA. Alpaga: A tool for solving parity games with imperfect information. In: Vol 5505. Springer; 2009:58-61. doi:10.1007/978-3-642-00768-2_7

Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. Gist: A Solver for Probabilistic Games. IST Austria; 2009. doi:10.15479/AT:IST-2009-0003

Chatterjee K, Henzinger TA, Horn F. Improved Lower Bounds for Request-Response and Finitary Streett Games. IST Austria; 2009. doi:10.15479/AT:IST-2009-0002