MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
M. Lukacisin, (2017).

Brittle fracture simulation with boundary elements for computer graphics
D. Hahn, Brittle Fracture Simulation with Boundary Elements for Computer Graphics, Institute of Science and Technology Austria, 2017.

The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W
C. Fraisse, M.A.L. Picard, B. Vicoso, Nature Communications 8 (2017).

Fastq files for "Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection"
M. Steinrück, C.C. Guet, (2017).

Source codes: Brittle fracture simulation with boundary elements for computer graphics
D. Hahn, (2017).

Supplementary Files for "The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W"
C. Fraisse, (2017).

Forward migration indexes
R. Hauschild, (2017).

Immunological synapse DC-Tcells
A.F. Leithner, (2017).

Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity
T. Bergmiller, A.M. Andersson, K. Tomasek, E. Balleza, D. Kiviet, R. Hauschild, G. Tkadik, C.C. Guet, (2017).

Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity
T. Bergmiller, A.M. Andersson, K. Tomasek, E. Balleza, D. Kiviet, R. Hauschild, G. Tkadik, C.C. Guet, Science 356 (2017) 311–315.

Data for "The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology"
B. Vicoso, (2017).

Strong amplifiers of natural selection
A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak , (2017).

Code for "The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology"
B. Vicoso, (2017).

Live tracking of moving samples in confocal microscopy for vertically grown roots
D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, J. Friml, ELife 6 (2017).

Light sheet fluorescence microscopy of plant roots growing on the surface of a gel
D. von Wangenheim, R. Hauschild, J. Friml, Journal of Visualized Experiments JoVE 2017 (2017).

Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel
D. von Wangenheim, R. Hauschild, J. Friml, (2017).

Live tracking of moving samples in confocal microscopy for vertically grown roots
R. Hauschild, (2017).

Bounding helly numbers via betti numbers
X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, M. Loebl, J. Nesetil, R. Thomas (Eds.), A Journey through Discrete Mathematics: A Tribute to Jiri Matousek, Springer, 2017, pp. 407–447.

Transient behavior between multi-cell flow states in ferrofluidic Taylor-Couette flow
S. Altmeyer, Y. Do, S. Ryu, Chaos 27 (2017).

Strongly aligned molecules inside helium droplets in the near-adiabatic regime
B. Shepperson, A. Chatterley, A. Søndergaard, L. Christiansen, M. Lemeshko, H. Stapelfeldt, The Journal of Chemical Physics 147 (2017).

A lower bound for the BCS functional with boundary conditions at infinity
A. Deuchert,  Journal of Mathematical Physics 58 (2017).

Rational curves on smooth hypersurfaces of low degree
T.D. Browning, P. Vishe, Geometric Methods in Algebra and Number Theory 11 (2017) 1657–1675.

Forms in many variables and differing degrees
T.D. Browning, R. Heath Brown, Journal of the European Mathematical Society 19 (2017) 357–394.

Tuning branching in ceria nanocrystals
T. Berestok, P. Guardia, J. Blanco, R. Nafria, P. Torruella, L. López Conesa, S. Estradé, M. Ibáñez, J. De Roo, Z. Luo, D. Cadavid, J. Martins, M. Kovalenko, F. Peiró, A. Cabot, Chemistry of Materials 29 (2017) 4418–4424.

Compound copper chalcogenide nanocrystals
C. Coughlan, M. Ibáñez, O. Dobrozhan, A. Singh, A. Cabot, K. Ryan, Chemical Reviews 117 (2017) 5865–6109.

Power-free values of polynomials on symmetric varieties
T.D. Browning, A. Gorodnik, Proceedings of the London Mathematical Society 114 (2017) 1044–1080.

A transference approach to a Roth-type theorem in the squares
T.D. Browning, S. Prendiville, International Mathematics Research Notices 2017 (2017) 2219–2248.

Norm forms for arbitrary number fields as products of linear polynomials
T.D. Browning, L. Matthiesen, Annales Scientifiques de l’Ecole Normale Superieure 50 (2017) 1383–1446.

Improvements in Birch's theorem on forms in many variables
T.D. Browning, S. Prendiville, Journal Fur Die Reine Und Angewandte Mathematik 2017 (2017) 122.

Many cubic surfaces contain rational points
T.D. Browning, Mathematika 63 (2017) 818–839.

Varieties with too many rational points
T.D. Browning, D. Loughran, Mathematische Zeitschrift 285 (2017) 1249–1267.

Bottom up engineering of thermoelectric nanomaterials and devices from solution processed nanoparticle building blocks
S. Ortega, M. Ibáñez, Y. Liu, Y. Zhang, M. Kovalenko, D. Cadavid, A. Cabot, Chemical Society Reviews 46 (2017) 3510–3528.

Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CR
A.K. Michael, J.L. Fribourgh, Y. Chelliah, C.R. Sandate, G.L. Hura, D. Schneidman-Duhovny, S.M. Tripathi, J.S. Takahashi, C.L. Partch, Proceedings of the National Academy of Sciences 114 (2017) 1560–1565.

Animal cryptochromes: Divergent roles in light perception, circadian timekeeping and beyond
A.K. Michael, J.L. Fribourgh, R.N. Van Gelder, C.L. Partch, Photochemistry and Photobiology 93 (2017) 128–140.

Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms
J.C. Fong, A. Rogers, A.K. Michael, N.C. Parsley, W.-C. Cornell, Y.-C. Lin, P.K. Singh, R. Hartmann, K. Drescher, E. Vinogradov, L.E. Dietrich, C.L. Partch, F.H. Yildiz, ELife 6 (2017).

A slow conformational switch in the BMAL1 transactivation domain modulates circadian rhythms
C.L. Gustafson, N.C. Parsley, H. Asimgil, H.-W. Lee, C. Ahlbach, A.K. Michael, H. Xu, O.L. Williams, T.L. Davis, A.C. Liu, C.L. Partch, Molecular Cell 66 (2017) 447–457.e7.

Structural basis of the day-night transition in a bacterial circadian clock
R. Tseng, N.F. Goularte, A. Chavan, J. Luu, S.E. Cohen, Y.-G. Chang, J. Heisler, S. Li, A.K. Michael, S. Tripathi, S.S. Golden, A. LiWang, C.L. Partch, Science 355 (2017) 1174–1180.

Deep HST imaging in 47 Tucanae: A global dynamical model
J. Heyl, I. Caiazzo, H. Richer, J. Anderson, J. Kalirai, J. Parada, The Astrophysical Journal 850 (2017).

The onset of convective coupling and freezing in the white dwarfs of 47 Tucanae
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Magnetar giant flare high-energy emission
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Polluting white dwarfs with perturbed exo-comets
I. Caiazzo, J.S. Heyl, Monthly Notices of the Royal Astronomical Society 469 (2017) 2750–2759.

Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast
M. Lukacisin, M. Landon, R. Jajoo, PLoS One 12 (2017).

The dynamic cytokine niche
F.P. Assen, M.K. Sixt, Immunity 46 (2017) 519–520.

PirB regulates asymmetries in hippocampal circuitry
H. Ukai, A. Kawahara, K. Hirayama, M.J. Case, S. Aino, M. Miyabe, K. Wakita, R. Oogi, M. Kasayuki, S. Kawashima, S. Sugimoto, K. Chikamatsu, N. Nitta, T. Koga, R. Shigemoto, T. Takai, I. Ito, PLoS One 12 (2017).

Green-light-induced inactivation of receptor signaling using cobalamin-binding domains
S. Kainrath, M. Stadler, E. Gschaider-Reichhart, M. Distel, H.L. Janovjak, Angewandte Chemie - International Edition 56 (2017) 4608–4611.

Methodological advances in auxin and cytokinin biology
A. Hurny, E. Benková, Auxins and Cytokinins in Plant Biology 1569 (2017) 1–29.

The RNA-binding protein tristetraprolin schedules apoptosis of pathogen-engaged neutrophils during bacterial infection
F. Ebner, V. Sedlyarov, S. Tasciyan, M. Ivin, F. Kratochvill, N. Gratz, L. Kenner, A. Villunger, M.K. Sixt, P. Kovarik, The Journal of Clinical Investigation 127 (2017) 2051–2065.

Interstitial fluid osmolarity modulates the action of differential tissue surface tension in progenitor cell segregation during gastrulation
G. Krens, J. Veldhuis, V. Barone, D. Capek, J.-L. Maître, W. Brodland, C.-P.J. Heisenberg, Development 144 (2017) 1798–1806.

Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection
M. Steinrück, C.C. Guet, ELife 6 (2017).

Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes
M. Lukacisinova, S. Novak, T. Paixao, PLoS Computational Biology 13 (2017).

Toward a quantitative understanding of antibiotic resistance evolution
M. Lukacisinova, M.T. Bollenbach, Current Opinion in Biotechnology 46 (2017) 90–97.

Non-polynomial worst case analysis of recursive programs
K. Chatterjee, H. Fu, A.K. Goharshady, in:, R. Majumdar, V. Kundak (Eds.), Springer, 2017, pp. 41–63.

JTDec: A tool for tree decompositions in soot
K. Chatterjee, A.K. Goharshady, A. Pavlogiannis, in:, D. D’Souza (Ed.), Springer, 2017, pp. 59–66.

Friction forces position the neural anlage
M. Smutny, Z. Ákos, S. Grigolon, S. Shamipour, V. Ruprecht, D. Capek, M. Behrndt, E. Papusheva, M. Tada, B. Hof, T. Vicsek, G. Salbreux, C.-P.J. Heisenberg, Nature Cell Biology 19 (2017) 306–317.

An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate
V. Barone, M. Lang, G. Krens, S. Pradhan, S. Shamipour, K. Sako, M.K. Sikora, C.C. Guet, C.-P.J. Heisenberg, Developmental Cell 43 (2017) 198–211.

Cell polarity in cerebral cortex development - cellular architecture shaped by biochemical networks
A.H. Hansen, C.F. Düllberg, C. Mieck, M. Loose, S. Hippenmeyer, Frontiers in Cellular Neuroscience 11 (2017).

Milestones toward Majorana-based quantum computing
D. Aasen, M. Hell, R. Mishmash, A.P. Higginbotham, J. Danon, M. Leijnse, T. Jespersen, J. Folk, C. Marcs, K. Flensberg, J. Alicea, Physical Review X 6 (2016).

An orthogonal permease–inducer–repressor feedback loop shows bistability
R. Gnügge, L. Dharmarajan, M. Lang, J. Stelling, ACS Synthetic Biology 5 (2016) 1098–1107.

Exponential protection of zero modes in Majorana islands
S.M. Albrecht, A.P. Higginbotham, T. Jespersen, M. Madsen, F. Kuemmeth, J. Nygård, P. Krogstrup, C. Marcus, Nature 531 (2016) 206–209.

Approaching a topological phase transition in Majorana nanowires
R. Mishmash, D. Aasen, A.P. Higginbotham, J. Alicea, Physical Review B 93 (2016).

Lipid membrane-mediated attraction between curvature inducing objects
C. van der Wel, A. Vahid, A. Sari, T. Idema, D. Heinrich, D.J. Kraft, Scientific Reports 6 (2016).

Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation
A. Sari, T.C.T. Michaels, A. Zaccone, T.P.J. Knowles, D. Frenkel, The Journal of Chemical Physics 145 (2016).

Non-equilibrium simulations of thermally induced electric fields in water
P. Wirnsberger, D. Fijan, A. Sari, M. Neumann, C. Dellago, D. Frenkel, The Journal of Chemical Physics 144 (2016).

Melting transition in lipid vesicles functionalised by mobile DNA linkers
S.J. Bachmann, J. Kotar, L. Parolini, A. Sari, P. Cicuta, L. Di Michele, B.M. Mognetti, Soft Matter 12 (2016) 7804–7817.

Physical determinants of the self-replication of protein fibrils
A. Sari, A.K. Buell, G. Meisl, T.C.T. Michaels, C.M. Dobson, S. Linse, T.P.J. Knowles, D. Frenkel, Nature Physics 12 (2016) 874–880.

Coordinate-targeted fluorescence nanoscopy with multiple off states
J.G. Danzl, S. Sidenstein, C. Gregor, N. Urban, P. Ilgen, S. Jakobs, S. Hell, Nature Photonics 10 (2016) 122–128.

Fluorescent rhodamines and fluorogenic carbopyronines for super-resolution STED microscopy in living cells
A. Butkevich, G. Mitronova, S. Sidenstein, J. Klocke, D. Kamin, D. Meineke, E. D’Este, P. Kraemer, J.G. Danzl, V. Belov, S. Hell, Angewandte Chemie - International Edition 55 (2016) 3290–3294.

Multicolour multilevel STED nanoscopy of actin/spectrin organization at synapses
S. Sidenstein, E. D’Este, M. Böhm, J.G. Danzl, V. Belov, S. Hell, Scientific Reports 6 (2016) 1–8.

Conditionally optimal algorithms for generalized Büchi Games
K. Chatterjee, W. Dvorák, M.H. Henzinger, V. Loitzenbauer, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.

On the skolem problem for continuous linear dynamical systems
V.K. Chonev, J. Ouaknine, J. Worrell, in:, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik, 2016.

Computation tree logic for synchronization properties
K. Chatterjee, L. Doyen, in:, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik, 2016.

Study of vortex states and dynamics in mesoscopic superconducting samples with MFM
H. Polshyn, T. Naibert, V. Chua, R. Budakian, in:, APS March Meeting 2016, American Physical Society, 2016.

Stochastic resonance magnetic force microscopy imaging of Josephson arrays
T. Naibert, H. Polshyn, B. Wolin, M. Durkin, R. Garrido Menacho, I.M. Shem, V. Chua, T. Hughes, N. Mason, R. Budakian, in:, APS March Meeting 2016, American Physical Society, 2016.

Cellular mechanisms for cargo delivery and polarity maintenance at different polar domains in plant cells
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SCP-ECG .0: An enhanced standard communication protocol for computer-assisted electrocardiography
P. Rubel, D. Pani, A. Schlögl, J. Fayn, F. Badilini, P. Macfarlane, A. Varri, in:, 2016 Computing in Cardiology Conference, Computing in Cardiology, 2016, pp. 309–312.

Relevant sparse codes with variational information bottleneck
M.J. Chalk, O. Marre, G. Tkadik, in:, Neural Information Processing Systems, 2016, pp. 1965–1973.

KCT auxiliary proteins modulate kinetics of GABAB receptor-mediated inhibition in Cholecystokinin-containing interneurons
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Geometric control and modeling of genome reprogramming
C. Uhler, G.V. Shivashankar, BioArchitecture 6 (2016) 76–84.

Nested weighted limit-average automata of bounded width
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Local linearizability for concurrent container-type data structures
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Computational multicopter design
T. Du, A. Schulz, B. Zhu, B. Bickel, W. Matusik, in:, ACM, 2016.

Lifelong learning with weighted majority votes
A. Pentina, R. Urner, in:, Neural Information Processing Systems, 2016, pp. 3619–3627.

FlexMolds: Automatic design of flexible shells for molding
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Improving weakly-supervised object localization by micro-annotation
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Parallel reachability analysis for hybrid systems
A. Gurung, A. Deka, E. Bartocci, S. Bogomolov, R. Grosu, R. Ray, in:, IEEE, 2016.

Estimating nonlinear neural response functions using GP priors and Kronecker methods
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0-catenin prevents multinucleation through control of MKL-dependent RhoA activity during cytokinesis
R.A.H. van de Ven, J.S. de Groot, D. Park, R. van Domselaar, D. de Jong, K. Szuhai, E. van der Wall, O.M. Rueda, H.R. Ali, C. Caldas, P.J. van Diest, M. Hetzer, E. Sahai, P.W.B. Derksen, Nature Communications 7 (2016).

Evolution of a transcriptional regulator from a transmembrane nucleoporin
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Nuclear envelope rupture is induced by actin-based nucleus confinement
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Nucleoporin-mediated regulation of cell identity genes
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Efficient single sideband microwave to optical conversion using a LiNbO WGM-resonator
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Synthesizing time triggered schedules for switched networks with faulty links
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Tutorial: Software tools for hybrid systems verification transformation and synthesis  HyST and TuLiP
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Space-time sculpting of liquid animation
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RASGR deficiency causes immunodeficiency with impaired cytoskeletal dynamics
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Quantitative automata under probabilistic semantics
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Proceedings of the 31st Annual ACM/IEEE Symposium, IEEE, 2016, pp. 76–85.

Model and objective separation with conditional lower bounds: disjunction is harder than conjunction
K. Chatterjee, W. Dvoák, M.H. Henzinger, V. Loitzenbauer, in:, Proceedings of the 31st Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2016, pp. 197–206.

Microtubule aging probed by microfluidics assisted tubulin washout
C.F. Düllberg, N. Cade, T. Surrey, Molecular Biology and Evolution 27 (2016) 3563–3573.

Heme drives hemolysis-induced susceptibility to infection via disruption of phagocyte functions
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Hierarchic genetic strategy with maturing as a generic tool for multiobjective optimization
R. azarz, M. Idzik, K. Gdek, E.P. Gajda-Zagorska, Journal of Computational Science 17 (2016) 249–260.