Complex stability of single proteins explored by forced unfolding experiments
H.L. Janovjak, T. Sapra, D. Mueller, Biophysical Journal 88 (2005) 37–39.

Hydrodynamic effects in fast AFM single molecule force measurements
H.L. Janovjak, J. Struckmeier, D. Mueller, European Biophysics Journal 34 (2005) 91–96.

Posterior mapping and posterior predictive distributions
J.P. Bollback, in:, R. Nielsen (Ed.), Statistical Methods in Molecular Evolution, Springer, 2005, pp. 439–462.

Methods, apparatus and computer program products for modeling three-dimensional colored objects
S. Williams, H. Edelsbrunner, P. Fu, (2005).

Extraction and simplification of iso-surfaces in tandem
D. Attali, D. Cohen Steiner, H. Edelsbrunner, in:, ACM, 2005, pp. 139–148.

The geometry of biomolecular solvation
H. Edelsbrunner, P. Koehl, in:, Combinatorial and Computational Geometry, Cambridge University Press, 2005, pp. 243–275.

Speciation and gene flow between snails of opposing chirality
A. Davison, S. Chiba, N.H. Barton, B. Clarke, PLoS Biology 3 (2005).

Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes
B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.

Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns
M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571.

Boundary regularity of admissible operators
C. Lampert, Publicacions Matemàtiques 49 (2005) 179–195.

Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins
H.L. Janovjak, D. Mueller, A. Humphris, Biophysical Journal 88 (2005) 1423–1431.

Information-based clustering
N. Slonim, G. Atwal, G. Tkadik, W. Bialek, PNAS 102 (2005) 18297–18302.

Estimating mutual information and multi-information in large networks
N. Slonim, G. Atwal, G. Tkadik, W. Bialek, ArXiv (2005) 1–11.

Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons
D. Engel, P.M. Jonas, Neuron 45 (2005) 405–17.

Games with secure equilibria
K. Chatterjee, T.A. Henzinger, M. Jurdziski, in:, Springer, 2005, pp. 141–161.

The drawback of mobility: invasive species in a globalised world
S. Cremer, J. Boomsma, in:, Elsevier, 2005.

The conduit system transports soluble antigens from the afferent lymph to resident dendritic cells in the T cell area of the lymph node
M.K. Sixt, N. Kanazawa, M. Selg, T. Samson, G. Roos, D. Reinhardt, R. Pabst, M. Lutz, L. Sorokin, Immunity 22 (2005) 19–29.

Experimental validation of the docking orientation of Cd with its Cdk2-CycA protein substrate
J. Sohn, J. Parks, G. Buhrman, P. Brown, K. Kristjánsdóttir, A. Safi, H. Edelsbrunner, W. Yang, J. Rudolph, Biochemistry 44 (2005) 16563–16573.

Coarse and reliable geometric alignment for protein docking
Y. Wang, P. Agarwal, P. Brown, H. Edelsbrunner, J. Rudolph, in:, World Scientific Publishing, 2005, pp. 64–75.

Wn functions in gastrulation by controlling cell cohesion through Rac and E-cadherin
F. Ulrich, M. Krieg, E. Schötz, V. Link, I. Castanon, V. Schnabel, A. Taubenberger, D. Müller, P. Puech, C.-P.J. Heisenberg, Developmental Cell 9 (2005) 555–564.

The limitations of adaptive dynamics as a model of evolution
N.H. Barton, J. Polechova, Journal of Evolutionary Biology 18 (2005) 1186–1190.

Measuring cell adhesion forces of primary gastrulating cells from zebrafish using atomic force microscopy
P. Puech, A. Taubenberger, F. Ulrich, M. Krieg, D. Mueller, C.-P.J. Heisenberg, Journal of Cell Science 118 (2005) 4199–4206.

Shield formation at the onset of zebrafish gastrulation
J. Montero, L. Carvalho, M. Wilsch Bräuninger, B. Kilian, C. Mustafa, C.-P.J. Heisenberg, Development 132 (2005) 1187–1198.

Speciation through competition: A critical review
J. Polechova, N.H. Barton, Evolution; International Journal of Organic Evolution 59 (2005) 1194–1210.

Evolution of recombination due to random drift
N.H. Barton, S. Otto, Genetics 169 (2005) 2353–2370.

Theoretical models of selection and mutationon quantitative traits
T. Johnson, N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360 (2005) 1411–1425.

Synthesis of interface specifications for Java classes
R. Alur, P. Cerny, P. Madhusudan, W. Nam, in:, ACM, 2005, pp. 98–109.

Trading end-to-end latency for composability
S. Matic, T.A. Henzinger, in:, IEEE, 2005, pp. 99–110.

A programmable microkernel for real-time systems
C. Kirsch, M. Sanvido, T.A. Henzinger, in:, ACM, 2005, pp. 35–45.

A classification of symbolic transition systems
T.A. Henzinger, R. Majumdar, J. Raskin, ACM Transactions on Computational Logic (TOCL) 6 (2005) 1–32.

Quantifying similarities between timed systems
T.A. Henzinger, R. Majumdar, V. Prabhu, in:, Springer, 2005, pp. 226–241.

Permissive interfaces
T.A. Henzinger, R. Jhala, R. Majumdar, in:, ACM, 2005, pp. 31–40.

Composable code generation for distributed Giotto
T.A. Henzinger, C. Kirsch, S. Matic, in:, ACM, 2005, pp. 21–30.

Automatic rectangular refinement of affine hybrid systems
L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2005, pp. 144–161.

Semiperfect-information games
K. Chatterjee, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 1–18.

The complexity of stochastic Rabin and Streett games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 878–890.

Mean-payoff parity games
K. Chatterjee, T.A. Henzinger, M. Jurdziski, in:, IEEE, 2005, pp. 178–187.

Verifying quantitative properties using bound functions
A. Chakrabarti, K. Chatterjee, T.A. Henzinger, O. Kupferman, R. Majumdar, in:, Springer, 2005, pp. 50–64.

Counterexample-guided planning
K. Chatterjee, T.A. Henzinger, R. Jhala, R. Majumdar, in:, AUAI Press, 2005, pp. 104–111.

Checking memory safety with BLAST
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer, 2005, pp. 2–18.

Web service interfaces
D. Beyer, A. Chakrabarti, T.A. Henzinger, in:, ACM, 2005, pp. 148–159.

Model checking discounted temporal properties
L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, Theoretical Computer Science 345 (2005) 139–170.

Interface-based design
L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 83–104.

Counterfactual quantum computation
O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, in:, IEEE, 2005, pp. 365–367.

Neuronal substrates of complex behaviors in C. elegans
M. de Bono, A. Villu Maricq, Annual Review of Neuroscience 28 (2005) 451–501.

Experience-dependent modulation of C. elegans behavior by ambient oxygen
B.H.H. Cheung, M. Cohen, C. Rogers, O. Albayram, M. de Bono, Current Biology 15 (2005) 905–917.

Signal propagation and logic gating in networks of integrate-and-fire neurons
T.P. Vogels, L.F. Abbott, Journal of Neuroscience 25 (2005) 10786–10795.

Neural network dynamics
T.P. Vogels, K. Rajan, L.F. Abbott, Annual Review of Neuroscience 28 (2005) 357–376.

DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).

Distribution of the strength of selection against amino acid replacements in human proteins
L. Yampolsky, F. Kondrashov, A. Kondrashov, Human Molecular Genetics 14 (2005) 3191–3201.

SOFAST-HMQC experiments for recording two-dimensional deteronuclear correlation spectra of proteins within a few seconds
P. Schanda, . Kupde, B. Brutscher, Journal of Biomolecular NMR 33 (2005) 199–211.

Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds
P. Schanda, B. Brutscher, Journal of the American Chemical Society 127 (2005) 8014–8015.

On diffusion in high-dimensional Hamiltonian systems
J. Bourgain, V. Kaloshin, Journal of Functional Analysis 229 (2005) 1–61.

The analysis of monomer sequences in protein and tRNA and the manifestation of the compensation of pathogenic deviations in their evolution
F. Kondrashov, Biofizika 50 (2005) 389–395.

In search of the limits of evolution
F. Kondrashov, Nature Genetics 37 (2005) 9–10.

Prediction of pathogenic mutations in mitochondrially encoded human tRNAs
F. Kondrashov, Human Molecular Genetics 14 (2005) 2415–2419.

The convergent evolution of the secondary structure of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus
F. Kondrashov, Biofizika 50 (2005) 396–403.

A universal trend of amino acid gain and loss in protein evolution
I. Jordan, F. Kondrashov, I. Adzhube0, Y. Wolf, E. Koonin, A. Kondrashov, S. Sunyaev, Nature 433 (2005) 633–638.

Epigenetic inheritance in Arabidopsis: Selective silence
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.

Cutting into solids with micropatterned gels
S.K. Smoukov, K.J.M. Bishop, R. Klajn, C.J. Campbell, B.A. Grzybowski, Advanced Materials 17 (2005) 1361–1365.

Applications, properties and synthesis of w-functionalized n-alkanethiols and disulfides - the building blocks of self-assembled monolayers
D. Witt, R. Klajn, P. Barski, B. Grzybowski, Current Organic Chemistry 8 (2005) 1763–1797.

One-step multilevel microfabrication by reactiondiffusion
C.J. Campbell, R. Klajn, M. Fialkowski, B.A. Grzybowski, Langmuir 21 (2005) 418–423.

Algorithmic challenges in web search engines
M.H. Henzinger, Internet Mathematics 1 (2004) 115–123.

Algorithmic aspects of web search engines
M.H. Henzinger, in:, 2th Annual European Symposium on Algorithms, Springer Nature, 2004, p. 3.

The past, present, and future of web search engines
M.H. Henzinger, in:, 31st International Colloquium on Automata, Languages and Programming, Springer Nature, 2004, p. 3.

The past, present, and future of web information retrieval
M.H. Henzinger, in:, SPIE Proceedings, Society of Photo-Optical Instrumentation Engineers, 2004, pp. 23–26.

Extracting knowledge from the World Wide Web
M.H. Henzinger, S. Lawrence, Proceedings of the National Academy of Sciences 101 (2004) 5186–5191.

Spatial and temporal variability of meteorological variables at Haut Glacier d'Arolla (Switzerland) during the ablation season 2001: Measurements and simulations
U. Strasser, J. Corripio, F. Pellicciotti, P. Burlando, B. Brock, M. Funk, Journal of Geophysical Research: Atmospheres 109 (2004).

Hodge cohomology of gravitational instantons
T. Hausel, E. Hunsicker, R. Mazzeo, Duke Mathematical Journal 122 (2004) 485–548.

Generators for the cohomology ring of the moduli space of rank 2 higgs bundles
T. Hausel, M. Thaddeus, Proceedings of the London Mathematical Society 88 (2004) 632–658.

Substrate-induced conformational change in bacterial complex I
A. Mamedova, P. Holt, J. Carroll, L.A. Sazanov, Journal of Biological Chemistry 279 (2004) 23830–23836.

Equal sums of three powers
T.D. Browning, R. Heath Brown, Inventiones Mathematicae 157 (2004) 553–573.

Involvement of the intracellular ion channel CLI in microglia-mediated ;2-amyloid-induced neurotoxicity
G. Novarino, C. Fabrizi, R. Tonini, M. Denti, A. Malchiodi, G. Lauro, B. Sacchetti, S. Paradisi, A. Ferroni, P. Curmi, S. Breit, M. Mazzanti, Journal of Neuroscience 24 (2004) 5322–5330.

One-dimensional behavior of dilute, trapped Bose gases
É. Lieb, R. Seiringer, J. Yngvason, Communications in Mathematical Physics 244 (2004) 347–393.

 Equivalent forms of the Bessis-Moussa-Villani conjecture
É. Lieb, R. Seiringer, Journal of Statistical Physics 115 (2004) 185–190.

Bose-Einstein quantum phase transition in an optical lattice model
M. Aizenman, É. Lieb, R. Seiringer, J. Solovej, J. Yngvason, Physical Review A - Atomic, Molecular, and Optical Physics 70 (2004) 023612-1-0236121-2.

Convex quadrilaterals and k-sets 
L. Lovász, K. Vesztergombi, U. Wagner, E. Welzl, in:, J. Pach (Ed.), Towards a Theory of Geometric Graphs, American Mathematical Society, 2004, pp. 139–148.

Shape dimension and intrinsic metric from samples of manifolds
J. Giesen, U. Wagner, Discrete &; Computational Geometry 32 (2004) 245–267.

New constructions of weak ;5-nets
J. Matousek, U. Wagner, Discrete &; Computational Geometry 32 (2004) 195–206.

The Matryoshka dolls of plant polarity
M. Sauer, J. Friml, Development 131 (2004) 5774–5775.

Immunolocalization of metabotropic glutamate receptor 1;1 (mGlu;1) in distinct classes of interneuron in the C region of the rat hippocampus
F. Ferraguti, P. Cobden, M. Pollard, D. Cope, R. Shigemoto, M. Watanabe, P. Somogyi, Hippocampus 14 (2004) 193–215.

GABAergic basket cells expressing cholecystokinin contain vesicular glutamate transporter type 3 (VGLU) in their synaptic terminals in hippocampus and isocortex of the rat
J. Somogyi, A. Baude, Y. Omori, H. Shimizu, S. El Mestikawy, M. Fukaya, R. Shigemoto, M. Watanabe, P. Somogyi, European Journal of Neuroscience 19 (2004) 552–569.

Localization of the GABAB receptor 1a/b subunit relative to glutamatergic synapses in the dorsal cochlear nucleus of the rat
R. Luján, R. Shigemoto, Á. Kulik, J. Juíz, Journal of Comparative Neurology 475 (2004) 36–46.

Immunocytochemical localization of the ;11A subunit of the P/Q-type calcium channel in the rat cerebellum
Á. Kulik, K. Nakadate, A. Hagiwara, Y. Fukazawa, R. Luján, H. Saito, N. Suzuki, A. Futatsugi, K. Mikoshiba, M. Frotscher, R. Shigemoto, European Journal of Neuroscience 19 (2004) 2169–2178.

Immunohistochemical localization of Ih channel subunits, HCN1-4, in the rat brain
T. Notomi, R. Shigemoto, Journal of Comparative Neurology 471 (2004) 241–276.

Bidirectional interactions between H-channels and Na+-K + pumps in mesencephalic trigeminal neurons
Y. Kang, T. Notomi, M. Saito, W. Zhang, R. Shigemoto, Journal of Neuroscience 24 (2004) 3694–3702.

Function and distribution of glutamate receptors in the central synapses
A. Momiyama, R. Shigemoto, Tanpakushitsu Kakusan Koso Protein Nucleic Acid Enzyme 49 (2004) 287–294.

HCN2 and HCN1 channels govern the regularity of autonomous pacemaking and synaptic resetting in globus pallidus neurons
S. Chan, R. Shigemoto, J. Mercer, J. Surmeier, Journal of Neuroscience 24 (2004) 9921–9932.

Depression of GABAergic input to identified hippocampal neurons by group III metabotropic glutamate receptors in the rat
N. Kogo, Y. Dalezios, M. Capogna, F. Ferraguti, R. Shigemoto, P. Somogyi, European Journal of Neuroscience 19 (2004) 2727–2740.

 Distribution of metabotropic GABA receptor subunits GABAa/b and GABA in the rat hippocampus during prenatal and postnatal development
G. López Bendito, R. Shigemoto, Á. Kulik, I. Vida, A. Fairén, R. Luján, Hippocampus 14 (2004) 836–848.

Magnetic Lieb-Thirring inequalities with optimal dependence on the field strength
L. Erdös, J. Solovej, Journal of Statistical Physics 116 (2004) 475–506.

On the quantum Boltzmann equation
L. Erdös, M. Salmhofer, H. Yau, Journal of Statistical Physics 116 (2004) 367–380.

Uniform Lieb-Thirring inequality for the three-dimensional Pauli operator with a strong non-homogeneous magnetic field
L. Erdös, J. Solovej, Annales Henri Poincare 5 (2004) 671–741.

Nonlinear Hartree equation as the mean field limit of weakly coupled fermions
A. Elgart, L. Erdös, B. Schlein, H. Yau, Journal de Mathématiques Pures et Appliquées 83 (2004) 1241–1273.

On the onset of oscillatory convection in molten gallium
B. Hof, A. Juel, L. Zhao, D. Henry, H. Ben Hadid, T. Mullin, Journal of Fluid Mechanics 515 (2004) 391–413.

Experimental observation of nonlinear traveling waves in turbulent pipe flow
B. Hof, C. Van Doorne, J. Westerweel, F. Nieuwstadt, H. Faisst, B. Eckhardt, H. Wedin, R. Kersweli, F. Waleffe, Science 305 (2004) 1594–1598.

The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome
M. Duroux, A. Houben, K. Rfeidka, J. Friml, K. Grasser, Plant Journal 40 (2004) 660–671.

A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux
J. Friml, X. Yang, M. Michniewicz, D. Weijers, A. Quint, O. Tietz, R. Benjamins, P. Ouwerkerk, K. Ljung, G. Sandberg, P. Hooykaas, K. Palme, R. Offringa, Science 306 (2004) 862–865.

In vitro culture of Arabidopsis embryos within their ovules
M. Sauer, J. Friml, Plant Journal 40 (2004) 835–843.