Prediction of functional sites by analysis of sequence and structure conservation
A. Panchenko, F. Kondrashov, S. Bryant, Protein Science 13 (2004) 884–892.
LibreCat: https://research-explorer.ista.ac.at/record/864
DOI: 10.1110/ps.03465504

Bioinformatical assay of human gene morbidity
F. Kondrashov, A. Ogurtsov, A. Kondrashov, Nucleic Acids Research 32 (2004) 1731–1737.
LibreCat: https://research-explorer.ista.ac.at/record/870
DOI: 10.1093/nar/gkh330

A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications
F. Kondrashov, E. Koonin, Trends in Genetics 20 (2004) 287–291.
LibreCat: https://research-explorer.ista.ac.at/record/875
DOI: 10.1016/j.tig.2004.05.001

Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs
A. Kern, F. Kondrashov, Nature Genetics 36 (2004) 1207–1212.
LibreCat: https://research-explorer.ista.ac.at/record/889
DOI: 10.1038/ng1451

Role of Arabidopsis ARGONAUT in RNA-directed DNA methylation triggered by inverted repeats
D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
LibreCat: https://research-explorer.ista.ac.at/record/9493
DOI: 10.1016/j.cub.2004.06.055
PMID: 15242620 

Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
LibreCat: https://research-explorer.ista.ac.at/record/9517
DOI: 10.1371/journal.pbio.0020104
PMID: 15024409

Silencing of transposons in plant genomes: kick them when they're down
D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
LibreCat: https://research-explorer.ista.ac.at/record/9511
DOI: 10.1186/gb-2004-5-12-249
PMID: 15575975

A limit shape theorem for periodic stochastic dispersion
D. Dolgopyat, V. Kaloshin, L. Koralov, Communications on Pure and Applied Mathematics 57 (2004) 1127–1158.
LibreCat: https://research-explorer.ista.ac.at/record/8517
DOI: 10.1002/cpa.20032

Sample path properties of the stochastic flows
L. Koralov, V. Kaloshin, D. Dolgopyat, The Annals of Probability 32 (2004) 1–27.
LibreCat: https://research-explorer.ista.ac.at/record/8518
DOI: 10.1214/aop/1078415827

Positive selection at sites of multiple amino acid replacements since rat-mouse divergence
G. Bazykin, F. Kondrashov, A. Ogurtsov, S. Sunyaev, A. Kondrashov, Nature 429 (2004) 558–562.
LibreCat: https://research-explorer.ista.ac.at/record/898
DOI: 10.1038/nature02601

The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
C. Castillo Davis, F. Kondrashov, D. Hartl, R. Kulathinal, Genome Research 14 (2004) 802–811.
LibreCat: https://research-explorer.ista.ac.at/record/902
DOI: 10.1101/gr.2195604

RNA silencing genes control de novo DNA methylation
S.W.-L. Chan, D. Zilberman,  Zhixin Xie,  Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
LibreCat: https://research-explorer.ista.ac.at/record/9454
DOI: 10.1126/science.1095989
PMID: 14988555

A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides
Z. Liao, M. Chen, Y. Gong, L. Guo, Q. Tan, X. Feng, X. Sun, F. Tan, K. Tang, DNA Sequence 15 (2004) 153–158.
LibreCat: https://research-explorer.ista.ac.at/record/12203
DOI: 10.1080/10425170410001667348
PMID: 15352294

Multicolour micropatterning of thin films of dry gels
R. Klajn, M. Fialkowski, I.T. Bensemann, A. Bitner, C.J. Campbell, K. Bishop, S. Smoukov, B.A. Grzybowski, Nature Materials 3 (2004) 729–735.
LibreCat: https://research-explorer.ista.ac.at/record/13435
DOI: 10.1038/nmat1231
PMID: 15378052

Color micro- and nanopatterning with counter-propagating reaction-diffusion fronts
C.J. Campbell, M. Fialkowski, R. Klajn, I.T. Bensemann, B.A. Grzybowski, Advanced Materials 16 (2004) 1912–1917.
LibreCat: https://research-explorer.ista.ac.at/record/13434
DOI: 10.1002/adma.200400383

Stress-dependent regulation of FOXO transcription factors by the SIR deacetylase
A. Brunet, L.B. Sweeney, J.F. Sturgill, K. Chua, P. Greer, Y. Lin, H. Tran, S. Ross, R. Mostoslavsky, H. Cohen, L. Hu, H.-L. Chen, M. Jedrychowski, S. Gygi, D. Sinclair, F. Alt, M. Greenberg, Science 303 (2004) 2011–2015.
LibreCat: https://research-explorer.ista.ac.at/record/7706
DOI: 10.1126/science.1094637

The conserved Nu7-160 complex is critical for nuclear pore complex assembly
T.C. Walther, A. Alves, H. Pickersgill, I. Loodice, M. Hetzer, V. Galy, B.B. Hülsmann, T. Köcher, M. Wilm, T. Allen, I.W. Mattaj, V. Doye, Cell 113 (2003) 195–206.
LibreCat: https://research-explorer.ista.ac.at/record/11122
DOI: 10.1016/s0092-8674(03)00235-6
PMID: 12705868

RanGTP mediates nuclear pore complex assembly
T.C. Walther, P. Askjaer, M. Gentzel, A. Habermann, G. Griffiths, M. Wilm, I.W. Mattaj, M. Hetzer, Nature 424 (2003) 689–694.
LibreCat: https://research-explorer.ista.ac.at/record/11121
DOI: 10.1038/nature01898
PMID: 12894213

Scheduling multicasts on unit-capacity trees and meshes
M.H. Henzinger, S. Leonardi, Journal of Computer and System Sciences 66 (2003) 567–611.
LibreCat: https://research-explorer.ista.ac.at/record/11766
DOI: 10.1016/s0022-0000(03)00043-6

Scheduling data transfers in a network and the set scheduling problem
A. Goel, M.H. Henzinger, S. Plotkin, E. Tardos, Journal of Algorithms 48 (2003) 314–332.
LibreCat: https://research-explorer.ista.ac.at/record/11764
DOI: 10.1016/s0196-6774(03)00054-3