In search of the limits of evolution
F. Kondrashov, Nature Genetics 37 (2005) 9–10.

The convergent evolution of the secondary structure of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus
F. Kondrashov, Biofizika 50 (2005) 396–403.

Prediction of pathogenic mutations in mitochondrially encoded human tRNAs
F. Kondrashov, Human Molecular Genetics 14 (2005) 2415–2419.

A universal trend of amino acid gain and loss in protein evolution
I. Jordan, F. Kondrashov, I. Adzhube0, Y. Wolf, E. Koonin, A. Kondrashov, S. Sunyaev, Nature 433 (2005) 633–638.

DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).

Epigenetic inheritance in Arabidopsis: Selective silence
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.

Interface-based design
L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 83–104.

Model checking discounted temporal properties
L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, Theoretical Computer Science 345 (2005) 139–170.

Counterfactual quantum computation
O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, in:, IEEE, 2005, pp. 365–367.

Neuronal substrates of complex behaviors in C. elegans
M. de Bono, A. Villu Maricq, Annual Review of Neuroscience 28 (2005) 451–501.

Experience-dependent modulation of C. elegans behavior by ambient oxygen
B.H.H. Cheung, M. Cohen, C. Rogers, O. Albayram, M. de Bono, Current Biology 15 (2005) 905–917.

Robust formation of morphogen gradients
M.T. Bollenbach, K. Kruse, P. Pantazis, M. González Gaitán, F. Jülicher, Physical Review Letters 94 (2005).

Posterior mapping and posterior predictive distributions
J.P. Bollback, in:, R. Nielsen (Ed.), Statistical Methods in Molecular Evolution, Springer, 2005, pp. 439–462.

Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations
T. Klausberger, L. Marton, J. O’Neill, J. Huck, Y. Dalezios, P. Fuentealba, W. Suen, E. Papp, T. Kaneko, M. Watanabe, J.L. Csicsvari, P. Somogyi, Journal of Neuroscience 25 (2005) 9782–9793.

Methods, apparatus and computer program products for modeling three-dimensional colored objects
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Surface tiling with differential topology
H. Edelsbrunner, in:, ACM, 2005, pp. 9–11.

Extraction and simplification of iso-surfaces in tandem
D. Attali, D. Cohen Steiner, H. Edelsbrunner, in:, ACM, 2005, pp. 139–148.

The geometry of biomolecular solvation
H. Edelsbrunner, P. Koehl, in:, Combinatorial and Computational Geometry, Cambridge University Press, 2005, pp. 243–275.

Cell migration during zebrafish gastrulation
I. Castanon Ortega, C.-P.J. Heisenberg, in:, D. Wedlich (Ed.), Cell Migration in Development and Disease, Wiley-VCH, 2005, pp. 71–105.