SIMMAP: stochastic character mapping of discrete traits on phylogenies
J.P. Bollback, BMC Bioinformatics 7 (2006).

A comparative study of energy minimization methods for Markov random fields
R. Szeliski, R. Zabih, D. Scharstein, O. Veksler, V. Kolmogorov, A. Agarwala, M. Tappen, C. Rother, in:, Springer, 2006, pp. 16–29.

Comparison of energy minimization algorithms for highly connected graphs
V. Kolmogorov, C. Rother, in:, Springer, 2006, pp. 1–15.

Probabilistic fusion of stereo with color and contrast for bilayer segmentation
V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, C. Rother, IEEE Transactions on Pattern Analysis and Machine Intelligence 28 (2006) 1480–1492.

An integral solution to surface evolution PDEs via geo cuts
Y. Boykov, V. Kolmogorov, D. Cremers, A. Delong, in:, Springer, 2006, pp. 409–422.

Atomic force microscopy
H.L. Janovjak, R. Sawhney, M. Stark, D. Mueller, in:, Techniques in Microscopy for Biomedical Applications, World Scientific Publishing, 2006, pp. 213–284.

Bacteriorhodopsin folds into the membrane against an external force
M. Kessler, K. Gottschalk, H.L. Janovjak, D. Mueller, H. Gaub, Journal of Molecular Biology 357 (2006) 644–654.

Observing folding pathways and kinetics of a single sodium-proton antiporter from Escherichia coli
A. Kedrov, H.L. Janovjak, C. Ziegler, W. Kühlbrandt, D. Mueller, Journal of Molecular Biology 355 (2006) 2–8.

Imaging and detecting molecular interactions of single membrane proteins
H.L. Janovjak, A. Kedrov, D. Cisneros, T. Sapra, J. Struckmeier, D. Mueller, Neurobiology of Aging 27 (2006) 546–561.

Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution
A. Betancourt, J.P. Bollback, Current Opinion in Genetics &; Development 16 (2006) 618–623.

Ising models for networks of real neurons
G. Tkadik, E. Schneidman, M. Berry, W. Bialek, ArXiv (2006) 1–4.

Games for controls
K. Chatterjee, R. Jagadeesan, C. Pitcher, in:, IEEE, 2006, pp. 70–82.

Timing and efficacy of transmitter release at mossy fiber synapses in the hippocampal network. (Review)
J. Bischofberger, D. Engel, M. Frotscher, P.M. Jonas, Pflugers Archivf: European Journal of Physiology 453 (2006) 361–372.

Nash equilibrium for upward-closed objectives
K. Chatterjee, in:, Springer, 2006, pp. 271–286.

Algorithms for Büchi Games
K. Chatterjee, T.A. Henzinger, N. Piterman, in:, ACM, 2006.

Method, apparatus and computer program products for automatically generating NURBS models of triangulated surfaces using homeomorphism
H. Edelsbrunner, P. Fu, D. Nekhayev, M. Facello, S. Williams, (2006).

Manufacturing methods and systems for rapid production of hearing-aid shells
P. Fu, D. Nekhayev, H. Edelsbrunner, (2006).

Method, apparatus and computer products that reconstruct surfaces from data points
Y. Fletcher, T. Gloth, H. Edelsbrunner, P. Fu, (2006).

Changes in functional connectivity within the rat striatopallidal axis during global brain activation in vivo
P. Magill, A. Pogosyan, A. Sharott, J.L. Csicsvari, J. Bolam, P. Brown, Journal of Neuroscience 26 (2006) 6318–6329.

Vines and vineyards by updating persistence in linear time
D. Cohen Steiner, H. Edelsbrunner, D. Morozov, in:, ACM, 2006, pp. 119–126.