Clonal interference is alleviated by high mutation rates in large populations
J.P. Bollback, J. Huelsenbeck, Molecular Biology and Evolution 24 (2007) 1397–1406.

Genes under positive selection in Escherichia coli
L. Petersen, J.P. Bollback, M. Dimmic, M. Hubisz, R. Nielsen, Genome Research 17 (2007) 1336–1343.

Algorithms for interface synthesis
D. Beyer, T.A. Henzinger, V. Singh, in:, Springer, 2007, pp. 4–19.

Qualitative networks: A symbolic approach to analyze biological signaling networks
M. Schaub, T.A. Henzinger, J. Fisher, BMC Systems Biology 1 (2007).

Abstract counterexample-based refinement for powerset domains
R. Manevich, J. Field, T.A. Henzinger, G. Ramalingam, M. Sagiv, in:, Program Analysis and Compilation, Theory and Practice: Essays Dedicated to Reinhard Wilhelm on the Occasion of His 60th Birthday, Springer, 2007, pp. 273–292.

The embedded machine: Predictable, portable real-time code
T.A. Henzinger, C. Kirsch, ACM Transactions on Programming Languages and Systems (TOPLAS) 29 (2007).

Quantitative generalizations of languages
T.A. Henzinger, in:, Springer, 2007, pp. 20–22.

Games, time, and probability: Graph models for system design and analysis
T.A. Henzinger, in:, Springer, 2007, pp. 103–110.

Executable cell biology
J. Fisher, T.A. Henzinger, Nature Biotechnology 25 (2007) 1239–1249.

CSL: Computer Science Logic 
J. Duparc, T.A. Henzinger, CSL: Computer Science Logic , Springer, 2007.

Predictive modeling of signaling crosstalk during C. elegans vulval development
J. Fisher, N. Piterman, A. Hajnal, T.A. Henzinger, PLoS Computational Biology 3(5):e92 (2007).

Assume-guarantee synthesis
K. Chatterjee, T.A. Henzinger, in:, Springer, 2007, pp. 261–275.

Algorithms for omega-regular games with imperfect information
K. Chatterjee, L. Doyen, T.A. Henzinger, J. Raskin, Logical Methods in Computer Science 3 (2007) 1–23.

Stochastic <9-Regular Games
K. Chatterjee, Stochastic <9-Regular Games, University of California, Berkeley, 2007.

A framework for compositional design and analysis of systems
A. Chakrabarti, A Framework for Compositional Design and Analysis of Systems, University of California, Berkeley, 2007.

The software model checker BLAST: Applications to software engineering
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, International Journal on Software Tools for Technology Transfer 9 (2007) 505–525.

Minimum-time reachability in timed games
T. Brihaye, T.A. Henzinger, V. Prabhu, J. Raskin, in:, Springer, 2007, pp. 825–837.

Path invariants
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, ACM, 2007, pp. 300–309.

Invariant synthesis for combined theories
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, Springer, 2007, pp. 378–394.

Configurable software verification: Concretizing the convergence of model checking and program analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, in:, Springer, 2007, pp. 504–518.