[{"DOAJ_listed":"1","external_id":{"isi":["001187580500013"],"pmid":["38457503"]},"pmid":1,"file":[{"checksum":"a19c43b260ea0bbaf895a29712e3153c","content_type":"application/pdf","file_size":1499302,"file_id":"15185","access_level":"open_access","relation":"main_file","success":1,"date_updated":"2024-03-25T09:42:10Z","date_created":"2024-03-25T09:42:10Z","creator":"dernst","file_name":"2024_ScienceAdv_Palkina.pdf"}],"author":[{"first_name":"Kseniia A.","last_name":"Palkina","full_name":"Palkina, Kseniia A."},{"first_name":"Tatiana A.","full_name":"Karataeva, Tatiana A.","last_name":"Karataeva"},{"last_name":"Perfilov","full_name":"Perfilov, Maxim M.","first_name":"Maxim M."},{"last_name":"Fakhranurova","full_name":"Fakhranurova, Liliia I.","first_name":"Liliia I."},{"first_name":"Nadezhda M.","last_name":"Markina","full_name":"Markina, Nadezhda M."},{"last_name":"Gonzalez Somermeyer","orcid":"0000-0001-9139-5383","full_name":"Gonzalez Somermeyer, Louisa","first_name":"Louisa","id":"4720D23C-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Elena","last_name":"Garcia-Perez","full_name":"Garcia-Perez, Elena"},{"full_name":"Vazquez-Vilar, Marta","last_name":"Vazquez-Vilar","first_name":"Marta"},{"full_name":"Rodriguez-Rodriguez, Marta","last_name":"Rodriguez-Rodriguez","first_name":"Marta"},{"full_name":"Vazquez-Vilriales, Victor","last_name":"Vazquez-Vilriales","first_name":"Victor"},{"first_name":"Ekaterina S.","last_name":"Shakhova","full_name":"Shakhova, Ekaterina S."},{"full_name":"Mitiouchkina, Tatiana","last_name":"Mitiouchkina","first_name":"Tatiana"},{"first_name":"Olga A.","full_name":"Belozerova, Olga A.","last_name":"Belozerova"},{"first_name":"Sergey I.","full_name":"Kovalchuk, Sergey I.","last_name":"Kovalchuk"},{"first_name":"Anna","last_name":"Alekberova","full_name":"Alekberova, Anna"},{"last_name":"Malyshevskaia","full_name":"Malyshevskaia, Alena K.","first_name":"Alena K."},{"first_name":"Evgenia N.","last_name":"Bugaeva","full_name":"Bugaeva, Evgenia N."},{"first_name":"Elena B.","full_name":"Guglya, Elena B.","last_name":"Guglya"},{"full_name":"Balakireva, Anastasia","last_name":"Balakireva","first_name":"Anastasia"},{"full_name":"Sytov, Nikita","last_name":"Sytov","first_name":"Nikita"},{"full_name":"Bezlikhotnova, Anastasia","last_name":"Bezlikhotnova","first_name":"Anastasia"},{"first_name":"Daria I.","full_name":"Boldyreva, Daria I.","last_name":"Boldyreva"},{"first_name":"Vladislav V.","full_name":"Babenko, Vladislav V.","last_name":"Babenko"},{"orcid":"0000-0001-8243-4694","last_name":"Kondrashov","full_name":"Kondrashov, Fyodor","first_name":"Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Vladimir V.","full_name":"Choob, Vladimir V.","last_name":"Choob"},{"last_name":"Orzaez","full_name":"Orzaez, Diego","first_name":"Diego"},{"first_name":"Ilia V.","full_name":"Yampolsky, Ilia V.","last_name":"Yampolsky"},{"last_name":"Mishin","full_name":"Mishin, Alexander S.","first_name":"Alexander S."},{"full_name":"Sarkisyan, Karen S.","last_name":"Sarkisyan","first_name":"Karen S."}],"doi":"10.1126/sciadv.adk1992","oa_version":"Published Version","issue":"10","article_number":"adk1992","publication_status":"published","intvolume":"        10","article_processing_charge":"Yes","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"gold","title":"A hybrid pathway for self-sustained luminescence","citation":{"short":"K.A. Palkina, T.A. Karataeva, M.M. Perfilov, L.I. Fakhranurova, N.M. Markina, L. Gonzalez Somermeyer, E. Garcia-Perez, M. Vazquez-Vilar, M. Rodriguez-Rodriguez, V. Vazquez-Vilriales, E.S. Shakhova, T. Mitiouchkina, O.A. Belozerova, S.I. Kovalchuk, A. Alekberova, A.K. Malyshevskaia, E.N. Bugaeva, E.B. Guglya, A. Balakireva, N. Sytov, A. Bezlikhotnova, D.I. Boldyreva, V.V. Babenko, F. Kondrashov, V.V. Choob, D. Orzaez, I.V. Yampolsky, A.S. Mishin, K.S. Sarkisyan, Science Advances 10 (2024).","mla":"Palkina, Kseniia A., et al. “A Hybrid Pathway for Self-Sustained Luminescence.” <i>Science Advances</i>, vol. 10, no. 10, adk1992, American Association for the Advancement of Science, 2024, doi:<a href=\"https://doi.org/10.1126/sciadv.adk1992\">10.1126/sciadv.adk1992</a>.","ista":"Palkina KA, Karataeva TA, Perfilov MM, Fakhranurova LI, Markina NM, Gonzalez Somermeyer L, Garcia-Perez E, Vazquez-Vilar M, Rodriguez-Rodriguez M, Vazquez-Vilriales V, Shakhova ES, Mitiouchkina T, Belozerova OA, Kovalchuk SI, Alekberova A, Malyshevskaia AK, Bugaeva EN, Guglya EB, Balakireva A, Sytov N, Bezlikhotnova A, Boldyreva DI, Babenko VV, Kondrashov F, Choob VV, Orzaez D, Yampolsky IV, Mishin AS, Sarkisyan KS. 2024. A hybrid pathway for self-sustained luminescence. Science Advances. 10(10), adk1992.","chicago":"Palkina, Kseniia A., Tatiana A. Karataeva, Maxim M. Perfilov, Liliia I. Fakhranurova, Nadezhda M. Markina, Louisa Gonzalez Somermeyer, Elena Garcia-Perez, et al. “A Hybrid Pathway for Self-Sustained Luminescence.” <i>Science Advances</i>. American Association for the Advancement of Science, 2024. <a href=\"https://doi.org/10.1126/sciadv.adk1992\">https://doi.org/10.1126/sciadv.adk1992</a>.","ieee":"K. A. Palkina <i>et al.</i>, “A hybrid pathway for self-sustained luminescence,” <i>Science Advances</i>, vol. 10, no. 10. American Association for the Advancement of Science, 2024.","apa":"Palkina, K. A., Karataeva, T. A., Perfilov, M. M., Fakhranurova, L. I., Markina, N. M., Gonzalez Somermeyer, L., … Sarkisyan, K. S. (2024). A hybrid pathway for self-sustained luminescence. <i>Science Advances</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/sciadv.adk1992\">https://doi.org/10.1126/sciadv.adk1992</a>","ama":"Palkina KA, Karataeva TA, Perfilov MM, et al. A hybrid pathway for self-sustained luminescence. <i>Science Advances</i>. 2024;10(10). doi:<a href=\"https://doi.org/10.1126/sciadv.adk1992\">10.1126/sciadv.adk1992</a>"},"volume":10,"file_date_updated":"2024-03-25T09:42:10Z","date_updated":"2025-09-04T13:16:05Z","day":"01","year":"2024","publication_identifier":{"eissn":["2375-2548"]},"type":"journal_article","date_published":"2024-03-01T00:00:00Z","language":[{"iso":"eng"}],"department":[{"_id":"FyKo"}],"has_accepted_license":"1","publication":"Science Advances","month":"03","status":"public","oa":1,"isi":1,"quality_controlled":"1","ddc":["580"],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"_id":"15179","OA_place":"publisher","date_created":"2024-03-25T08:54:33Z","scopus_import":"1","publisher":"American Association for the Advancement of Science","abstract":[{"text":"The fungal bioluminescence pathway can be reconstituted in other organisms allowing luminescence imaging without exogenously supplied substrate. The pathway starts from hispidin biosynthesis—a step catalyzed by a large fungal polyketide synthase that requires a posttranslational modification for activity. Here, we report identification of alternative compact hispidin synthases encoded by a phylogenetically diverse group of plants. A hybrid bioluminescence pathway that combines plant and fungal genes is more compact, not dependent on availability of machinery for posttranslational modifications, and confers autonomous bioluminescence in yeast, mammalian, and plant hosts. The compact size of plant hispidin synthases enables additional modes of delivery of autoluminescence, such as delivery with viral vectors.","lang":"eng"}],"article_type":"original","acknowledgement":"We thank Milaboratory (milaboratory.com) for the access to computing and storage infrastructure. We thank J. Petrasek for providing the BY-2 cell culture line. We thank Konstantin Lukyanov laboratory and Sergey Deyev laboratory for assistance with experiments.\r\nThis study was partially funded by Light Bio and Planta. The Synthetic biology Group is funded by the MRC London Institute of Medical Sciences (UKRI MC-A658-5QEA0). Cloning and luminescent assays performed in BY-2 were partially supported by RSF, project number 22-14-00400, https://rscf.ru/project/22-14-00400/. Plant transformations were funded by RFBR and MOST, project number 21-54-52004. Plant imaging experiments were funded by RSF, project number 22-74-00124, https://rscf.ru/project/22-74-00124/. Viral delivery experiments were funded by the grant PID2019-108203RB-I00 Plan Nacional I + D from the Ministerio de Ciencia e Innovación (Spain) through the Agencia Estatal de Investigación (cofinanced by the European Regional Development Fund)."},{"doi":"10.1103/physrevresearch.6.013257","author":[{"last_name":"Becker","full_name":"Becker, A.","first_name":"A."},{"first_name":"Georgios","id":"d7b23d3a-9e21-11ec-b482-f76739596b95","last_name":"Koutentakis","full_name":"Koutentakis, Georgios"},{"full_name":"Schmelcher, P.","last_name":"Schmelcher","first_name":"P."}],"file":[{"checksum":"4e0e58d1f58386fb016284c84db2a300","content_type":"application/pdf","file_size":2207067,"file_id":"15183","access_level":"open_access","relation":"main_file","date_created":"2024-03-25T09:24:55Z","date_updated":"2024-03-25T09:24:55Z","success":1,"file_name":"2024_PhysicalReviewResearch_Becker.pdf","creator":"dernst"}],"oa_version":"Published Version","external_id":{"arxiv":["2310.17995"]},"DOAJ_listed":"1","arxiv":1,"issue":"1","article_number":"013257","publication_status":"published","intvolume":"         6","year":"2024","publication_identifier":{"eissn":["2643-1564"]},"type":"journal_article","file_date_updated":"2024-03-25T09:24:55Z","date_updated":"2025-05-14T09:32:03Z","day":"01","has_accepted_license":"1","department":[{"_id":"MiLe"}],"date_published":"2024-03-01T00:00:00Z","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes","project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"volume":6,"title":"Synthetic dimension-induced pseudo Jahn-Teller effect in one-dimensional confined fermions","citation":{"mla":"Becker, A., et al. “Synthetic Dimension-Induced Pseudo Jahn-Teller Effect in One-Dimensional Confined Fermions.” <i>Physical Review Research</i>, vol. 6, no. 1, 013257, American Physical Society, 2024, doi:<a href=\"https://doi.org/10.1103/physrevresearch.6.013257\">10.1103/physrevresearch.6.013257</a>.","ista":"Becker A, Koutentakis G, Schmelcher P. 2024. Synthetic dimension-induced pseudo Jahn-Teller effect in one-dimensional confined fermions. Physical Review Research. 6(1), 013257.","short":"A. Becker, G. Koutentakis, P. Schmelcher, Physical Review Research 6 (2024).","apa":"Becker, A., Koutentakis, G., &#38; Schmelcher, P. (2024). Synthetic dimension-induced pseudo Jahn-Teller effect in one-dimensional confined fermions. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevresearch.6.013257\">https://doi.org/10.1103/physrevresearch.6.013257</a>","ieee":"A. Becker, G. Koutentakis, and P. Schmelcher, “Synthetic dimension-induced pseudo Jahn-Teller effect in one-dimensional confined fermions,” <i>Physical Review Research</i>, vol. 6, no. 1. American Physical Society, 2024.","ama":"Becker A, Koutentakis G, Schmelcher P. Synthetic dimension-induced pseudo Jahn-Teller effect in one-dimensional confined fermions. <i>Physical Review Research</i>. 2024;6(1). doi:<a href=\"https://doi.org/10.1103/physrevresearch.6.013257\">10.1103/physrevresearch.6.013257</a>","chicago":"Becker, A., Georgios Koutentakis, and P. Schmelcher. “Synthetic Dimension-Induced Pseudo Jahn-Teller Effect in One-Dimensional Confined Fermions.” <i>Physical Review Research</i>. American Physical Society, 2024. <a href=\"https://doi.org/10.1103/physrevresearch.6.013257\">https://doi.org/10.1103/physrevresearch.6.013257</a>."},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"_id":"15181","date_created":"2024-03-25T08:57:07Z","scopus_import":"1","ec_funded":1,"acknowledgement":"This work has been funded by the Cluster of Excellence “Advanced Imaging of Matter” of the Deutsche Forschungsgemeinschaft (DFG) - EXC 2056 - Project ID 390715994.\r\nG.M.K. gratefully acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413.","article_type":"original","abstract":[{"lang":"eng","text":"We demonstrate the failure of the adiabatic Born-Oppenheimer approximation to describe the ground state of a quantum impurity within an ultracold Fermi gas despite substantial mass differences between the bath and impurity species. Increasing repulsion leads to the appearance of nonadiabatic couplings between the fast bath and slow impurity degrees of freedom, which reduce the parity symmetry of the latter according to the pseudo Jahn-Teller effect. The presence of this mechanism is associated to a conical intersection involving the impurity position and the inverse of the interaction strength, which acts as a synthetic dimension. We elucidate the presence of these effects via a detailed ground-state analysis involving the comparison of ab initio fully correlated simulations with effective models. Our study suggests ultracold atomic ensembles as potent emulators of complex molecular phenomena."}],"publisher":"American Physical Society","publication":"Physical Review Research","month":"03","oa":1,"status":"public","quality_controlled":"1","ddc":["530"]},{"intvolume":"        51","issue":"6","article_number":" e2023GL106523","publication_status":"published","oa_version":"Published Version","file":[{"access_level":"open_access","relation":"main_file","file_id":"15187","file_size":1280108,"content_type":"application/pdf","checksum":"eacb011091a503b9e7b748fef639ba4c","creator":"dernst","file_name":"2024_GeophysResLetters_Hwong.pdf","date_created":"2024-03-25T11:28:25Z","date_updated":"2024-03-25T11:28:25Z","success":1}],"author":[{"full_name":"Hwong, Yi-Ling","orcid":"0000-0001-9281-3479","last_name":"Hwong","id":"1217aa61-4dd1-11ec-9ac3-f2ba3f17ee22","first_name":"Yi-Ling"},{"id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","first_name":"Caroline J","full_name":"Muller, Caroline J","orcid":"0000-0001-5836-5350","last_name":"Muller"}],"doi":"10.1029/2023gl106523","related_material":{"record":[{"status":"public","relation":"research_data","id":"19307"}]},"APC_amount":"2940 EUR","DOAJ_listed":"1","external_id":{"isi":["001187002300001"]},"publisher":"Wiley","ec_funded":1,"article_type":"original","abstract":[{"lang":"eng","text":"The elimination of rain evaporation in the planetary boundary layer (PBL) has been found to lead to convective self‐aggregation (CSA) even without radiative feedback, but the precise mechanisms underlying this phenomenon remain unclear. We conducted cloud‐resolving simulations with two domain sizes and progressively reduced rain evaporation in the PBL. Surprisingly, CSA only occurred when rain evaporation was almost completely removed. The additional convective heating resulting from the reduction of evaporative cooling in the moist patch was found to be the trigger, thereafter a dry subsidence intrusion into the PBL in the dry patch takes over and sets CSA in motion. Temperature and moisture anomalies oppose each other in their buoyancy effects, hence explaining the need for almost total rain evaporation removal. We also found radiative cooling and not cold pools to be the leading cause for the comparative ease of CSA to take place in the larger domain."}],"acknowledgement":"YLH is supported by funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant 101034413. CM gratefully acknowledges funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant 805041). The authors warmly thank Steven Sherwood, Jiawei Bao, Bidyut Goswami, and Martin Janssens for stimulating and helpful discussions. They also thank Christopher Holloway and an anonymous reviewer for providing helpful feedback that greatly improved this manuscript.\r\n","tmp":{"short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"OA_place":"publisher","_id":"15186","date_created":"2024-03-25T10:27:30Z","scopus_import":"1","keyword":["General Earth and Planetary Sciences","Geophysics"],"ddc":["550"],"quality_controlled":"1","publication":"Geophysical Research Letters","month":"03","status":"public","oa":1,"corr_author":"1","isi":1,"language":[{"iso":"eng"}],"date_published":"2024-03-19T00:00:00Z","department":[{"_id":"CaMu"}],"has_accepted_license":"1","file_date_updated":"2024-03-25T11:28:25Z","day":"19","date_updated":"2025-09-04T13:16:39Z","publication_identifier":{"issn":["0094-8276"],"eissn":["1944-8007"]},"year":"2024","type":"journal_article","title":"The unreasonable efficiency of total rain evaporation removal in triggering convective self‐aggregation","citation":{"apa":"Hwong, Y.-L., &#38; Muller, C. J. (2024). The unreasonable efficiency of total rain evaporation removal in triggering convective self‐aggregation. <i>Geophysical Research Letters</i>. Wiley. <a href=\"https://doi.org/10.1029/2023gl106523\">https://doi.org/10.1029/2023gl106523</a>","ama":"Hwong Y-L, Muller CJ. The unreasonable efficiency of total rain evaporation removal in triggering convective self‐aggregation. <i>Geophysical Research Letters</i>. 2024;51(6). doi:<a href=\"https://doi.org/10.1029/2023gl106523\">10.1029/2023gl106523</a>","ieee":"Y.-L. Hwong and C. J. Muller, “The unreasonable efficiency of total rain evaporation removal in triggering convective self‐aggregation,” <i>Geophysical Research Letters</i>, vol. 51, no. 6. Wiley, 2024.","chicago":"Hwong, Yi-Ling, and Caroline J Muller. “The Unreasonable Efficiency of Total Rain Evaporation Removal in Triggering Convective Self‐aggregation.” <i>Geophysical Research Letters</i>. Wiley, 2024. <a href=\"https://doi.org/10.1029/2023gl106523\">https://doi.org/10.1029/2023gl106523</a>.","mla":"Hwong, Yi-Ling, and Caroline J. Muller. “The Unreasonable Efficiency of Total Rain Evaporation Removal in Triggering Convective Self‐aggregation.” <i>Geophysical Research Letters</i>, vol. 51, no. 6, e2023GL106523, Wiley, 2024, doi:<a href=\"https://doi.org/10.1029/2023gl106523\">10.1029/2023gl106523</a>.","ista":"Hwong Y-L, Muller CJ. 2024. The unreasonable efficiency of total rain evaporation removal in triggering convective self‐aggregation. Geophysical Research Letters. 51(6), e2023GL106523.","short":"Y.-L. Hwong, C.J. Muller, Geophysical Research Letters 51 (2024)."},"project":[{"call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413"},{"grant_number":"805041","name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","_id":"629205d8-2b32-11ec-9570-e1356ff73576","call_identifier":"H2020"}],"volume":51,"article_processing_charge":"Yes","OA_type":"gold","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"file":[{"checksum":"ffc29d65e712849f0d31009271e06a63","relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_size":366029,"file_id":"18791","date_updated":"2025-01-09T08:37:20Z","success":1,"date_created":"2025-01-09T08:37:20Z","creator":"dernst","file_name":"2024_JourCombiTheoryA_Frankl.pdf"}],"author":[{"last_name":"Frankl","full_name":"Frankl, Peter","first_name":"Peter"},{"full_name":"Pach, János","last_name":"Pach","id":"E62E3130-B088-11EA-B919-BF823C25FEA4","first_name":"János"},{"last_name":"Pálvölgyi","full_name":"Pálvölgyi, Dömötör","first_name":"Dömötör"}],"doi":"10.1016/j.jcta.2024.105889","oa_version":"Published Version","external_id":{"isi":["001217739200001"],"arxiv":["2310.16701"]},"arxiv":1,"issue":"8","publication_status":"published","article_number":"105889","intvolume":"       206","file_date_updated":"2025-01-09T08:37:20Z","day":"01","date_updated":"2025-09-04T13:20:39Z","year":"2024","type":"journal_article","publication_identifier":{"eissn":["1096-0899"],"issn":["0097-3165"]},"date_published":"2024-08-01T00:00:00Z","language":[{"iso":"eng"}],"has_accepted_license":"1","department":[{"_id":"HeEd"}],"article_processing_charge":"No","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"hybrid","title":"Odd-sunflowers","citation":{"mla":"Frankl, Peter, et al. “Odd-Sunflowers.” <i>Journal of Combinatorial Theory, Series A</i>, vol. 206, no. 8, 105889, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.jcta.2024.105889\">10.1016/j.jcta.2024.105889</a>.","ista":"Frankl P, Pach J, Pálvölgyi D. 2024. Odd-sunflowers. Journal of Combinatorial Theory, Series A. 206(8), 105889.","short":"P. Frankl, J. Pach, D. Pálvölgyi, Journal of Combinatorial Theory, Series A 206 (2024).","apa":"Frankl, P., Pach, J., &#38; Pálvölgyi, D. (2024). Odd-sunflowers. <i>Journal of Combinatorial Theory, Series A</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcta.2024.105889\">https://doi.org/10.1016/j.jcta.2024.105889</a>","ieee":"P. Frankl, J. Pach, and D. Pálvölgyi, “Odd-sunflowers,” <i>Journal of Combinatorial Theory, Series A</i>, vol. 206, no. 8. Elsevier, 2024.","chicago":"Frankl, Peter, János Pach, and Dömötör Pálvölgyi. “Odd-Sunflowers.” <i>Journal of Combinatorial Theory, Series A</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.jcta.2024.105889\">https://doi.org/10.1016/j.jcta.2024.105889</a>.","ama":"Frankl P, Pach J, Pálvölgyi D. Odd-sunflowers. <i>Journal of Combinatorial Theory, Series A</i>. 2024;206(8). doi:<a href=\"https://doi.org/10.1016/j.jcta.2024.105889\">10.1016/j.jcta.2024.105889</a>"},"volume":206,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png"},"_id":"15247","OA_place":"publisher","scopus_import":"1","date_created":"2024-03-31T22:01:11Z","publisher":"Elsevier","acknowledgement":"We are grateful to Balázs Keszegh, and to the members of the Miklós Schweitzer Competition committee of 2022 for valuable discussions, and Shira Zerbib for pointing out several important mathematical typos.","article_type":"original","abstract":[{"lang":"eng","text":"Extending the notion of sunflowers, we call a family of at least two sets an odd-sunflower if every element of the underlying set is contained in an odd number of sets or in none of them. It follows from the Erdős–Szemerédi conjecture, recently proved by Naslund and Sawin, that there is a constant <2 such that every family of subsets of an n-element set that contains no odd-sunflower consists of at most n sets. We construct such families of size at least 1.5021n. We also characterize minimal odd-sunflowers of triples."}],"publication":"Journal of Combinatorial Theory, Series A","month":"08","oa":1,"status":"public","corr_author":"1","isi":1,"ddc":["510"],"quality_controlled":"1"},{"file":[{"file_name":"2024_AdvancesMath_Shen.pdf","creator":"dernst","date_created":"2024-07-22T12:10:03Z","date_updated":"2024-07-22T12:10:03Z","success":1,"checksum":"68f2f08136ccf547891a16a2c0621e97","file_size":702889,"file_id":"17315","content_type":"application/pdf","access_level":"open_access","relation":"main_file"}],"author":[{"full_name":"Shen, Shiyu","last_name":"Shen","orcid":"0000-0002-4444-8718","id":"544cccd3-9005-11ec-87bc-94aef1c5b814","first_name":"Shiyu"}],"doi":"10.1016/j.aim.2024.109616","oa_version":"Published Version","external_id":{"isi":["001216128200001"],"arxiv":["2302.02817"]},"arxiv":1,"publication_status":"published","article_number":"109616","issue":"5","intvolume":"       443","date_updated":"2025-09-04T13:21:18Z","day":"01","file_date_updated":"2024-07-22T12:10:03Z","type":"journal_article","publication_identifier":{"eissn":["1090-2082"],"issn":["0001-8708"]},"year":"2024","date_published":"2024-05-01T00:00:00Z","language":[{"iso":"eng"}],"department":[{"_id":"TaHa"}],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"hybrid","citation":{"chicago":"Shen, Shiyu. “Mirror Symmetry for Parabolic Higgs Bundles via P-Adic Integration.” <i>Advances in Mathematics</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.aim.2024.109616\">https://doi.org/10.1016/j.aim.2024.109616</a>.","apa":"Shen, S. (2024). Mirror symmetry for parabolic Higgs bundles via p-adic integration. <i>Advances in Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.aim.2024.109616\">https://doi.org/10.1016/j.aim.2024.109616</a>","ama":"Shen S. Mirror symmetry for parabolic Higgs bundles via p-adic integration. <i>Advances in Mathematics</i>. 2024;443(5). doi:<a href=\"https://doi.org/10.1016/j.aim.2024.109616\">10.1016/j.aim.2024.109616</a>","ieee":"S. Shen, “Mirror symmetry for parabolic Higgs bundles via p-adic integration,” <i>Advances in Mathematics</i>, vol. 443, no. 5. Elsevier, 2024.","short":"S. Shen, Advances in Mathematics 443 (2024).","ista":"Shen S. 2024. Mirror symmetry for parabolic Higgs bundles via p-adic integration. Advances in Mathematics. 443(5), 109616.","mla":"Shen, Shiyu. “Mirror Symmetry for Parabolic Higgs Bundles via P-Adic Integration.” <i>Advances in Mathematics</i>, vol. 443, no. 5, 109616, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.aim.2024.109616\">10.1016/j.aim.2024.109616</a>."},"title":"Mirror symmetry for parabolic Higgs bundles via p-adic integration","volume":443,"project":[{"call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413"}],"scopus_import":"1","date_created":"2024-03-31T22:01:11Z","OA_place":"publisher","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"_id":"15248","publisher":"Elsevier","article_type":"original","abstract":[{"text":"Applying the technique of p-adic integration, we prove the topological mirror symmetry conjecture of Hausel-Thaddeus for the moduli spaces of (strongly) parabolic Higgs bundles for the structure groups SLn and PGLn, building on previous work of Groechenig-Wyss-Ziegler on the non-parabolic case. We also prove the E-polynomial of the smooth moduli space of parabolic GLn-Higgs bundles is independent of the degree of the underlying vector bundles.","lang":"eng"}],"acknowledgement":"Shiyu Shen has received funding from the European Union's Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No. 101034413.","ec_funded":1,"oa":1,"status":"public","month":"05","publication":"Advances in Mathematics","isi":1,"corr_author":"1","ddc":["510"],"quality_controlled":"1"},{"ddc":["520"],"quality_controlled":"1","isi":1,"corr_author":"1","status":"public","oa":1,"publication":"Monthly Notices of the Royal Astronomical Society","month":"04","article_type":"original","abstract":[{"text":"Observationally mapping the relation between galaxies and the intergalactic medium (IGM) is of key interest for studies of cosmic reionization. Diffuse hydrogen gas has typically been observed in H I Lyman-α (Lyα) absorption in the spectra of bright background quasars. However, it is important to extend these measurements to background galaxies as quasars become increasingly rare at high redshift and rarely probe closely separated sight lines. Here, we use deep integral field spectroscopy in the MUSE eXtremely Deep Field to demonstrate the measurement of the Lyα transmission at z ≈ 4 in absorption to a background galaxy at z = 4.77. The H I transmission is consistent with independent quasar sight lines at similar redshifts. Exploiting the high number of spectroscopic redshifts of faint galaxies (500 between z = 4.0–4.7 within a radius of 8 arcmin) that are tracers of the density field, we show that Lyα transmission is inversely correlated with galaxy density, i.e. transparent regions in the Lyα forest mark underdense regions at z ≈ 4. Due to large-scale clustering, galaxies are surrounded by excess H I absorption over the cosmic mean out to 4 cMpc/h70. We also find that redshifts from the peak of the Lyα line are typically offset from the systemic redshift by +170 km s−1. This work extends results from z ≈ 2–3 to higher redshifts and demonstrates the power of deep integral field spectroscopy to simultaneously measure the ionization structure of the IGM and the large-scale density field in the early Universe.","lang":"eng"}],"acknowledgement":"We thank the referee for constructive comments that helped improving the paper. Based on observations collected at the European Southern Observatory under ESO programme 1101.A-0127. Funded by the European Union (ERC, AGENTS, 101076224). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. GP acknowledges support from the Netherlands Research School for Astronomy (Nederlandse Onderzoekschool Voor Astronomie, NOVA). JB acknowledges financial support from the Fundação para a Ciência e a Tecnologia (FCT) through national funds PTDC/FIS-AST/4862/2020, work contract 2020.03379.CEECIND, and research grants UIDB/04434/2020 and UIDP/04434/2020. TU and LW acknowledge funding by the European Research Council through ERC-AdG SPECMAP-CGM, GA 101020943. TG is supported by the ERC Starting grant 757258 ‘TRIPLE’.","publisher":"Oxford University Press","page":"2794-2806","scopus_import":"1","date_created":"2024-03-31T22:01:12Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"_id":"15249","OA_place":"publisher","volume":529,"project":[{"_id":"bd9b2118-d553-11ed-ba76-db24564edfea","grant_number":"101076224","name":"Young galaxies as tracers and agents of cosmic reionization"}],"citation":{"apa":"Matthee, J. J., Golling, C., Mackenzie, R., Pezzulli, G., Lilly, S., Schaye, J., … Wisotzki, L. (2024). Large-scale excess H I absorption around z ≈ 4 galaxies detected in a background galaxy spectrum in the MUSE eXtremely deep field. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/mnras/stae673\">https://doi.org/10.1093/mnras/stae673</a>","chicago":"Matthee, Jorryt J, Christopher Golling, Ruari Mackenzie, Gabriele Pezzulli, Simon Lilly, Joop Schaye, Roland Bacon, et al. “Large-Scale Excess H I Absorption around z ≈ 4 Galaxies Detected in a Background Galaxy Spectrum in the MUSE EXtremely Deep Field.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press, 2024. <a href=\"https://doi.org/10.1093/mnras/stae673\">https://doi.org/10.1093/mnras/stae673</a>.","ama":"Matthee JJ, Golling C, Mackenzie R, et al. Large-scale excess H I absorption around z ≈ 4 galaxies detected in a background galaxy spectrum in the MUSE eXtremely deep field. <i>Monthly Notices of the Royal Astronomical Society</i>. 2024;529(3):2794-2806. doi:<a href=\"https://doi.org/10.1093/mnras/stae673\">10.1093/mnras/stae673</a>","ieee":"J. J. Matthee <i>et al.</i>, “Large-scale excess H I absorption around z ≈ 4 galaxies detected in a background galaxy spectrum in the MUSE eXtremely deep field,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 529, no. 3. Oxford University Press, pp. 2794–2806, 2024.","mla":"Matthee, Jorryt J., et al. “Large-Scale Excess H I Absorption around z ≈ 4 Galaxies Detected in a Background Galaxy Spectrum in the MUSE EXtremely Deep Field.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 529, no. 3, Oxford University Press, 2024, pp. 2794–806, doi:<a href=\"https://doi.org/10.1093/mnras/stae673\">10.1093/mnras/stae673</a>.","ista":"Matthee JJ, Golling C, Mackenzie R, Pezzulli G, Lilly S, Schaye J, Bacon R, Kusakabe H, Urrutia T, Boogaard L, Brinchmann J, Maseda MV, Garel T, Bouché NF, Wisotzki L. 2024. Large-scale excess H I absorption around z ≈ 4 galaxies detected in a background galaxy spectrum in the MUSE eXtremely deep field. Monthly Notices of the Royal Astronomical Society. 529(3), 2794–2806.","short":"J.J. Matthee, C. Golling, R. Mackenzie, G. Pezzulli, S. Lilly, J. Schaye, R. Bacon, H. Kusakabe, T. Urrutia, L. Boogaard, J. Brinchmann, M.V. Maseda, T. Garel, N.F. Bouché, L. Wisotzki, Monthly Notices of the Royal Astronomical Society 529 (2024) 2794–2806."},"title":"Large-scale excess H I absorption around z ≈ 4 galaxies detected in a background galaxy spectrum in the MUSE eXtremely deep field","OA_type":"gold","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_processing_charge":"Yes","has_accepted_license":"1","department":[{"_id":"JoMa"}],"date_published":"2024-04-01T00:00:00Z","language":[{"iso":"eng"}],"year":"2024","publication_identifier":{"eissn":["1365-2966"],"issn":["0035-8711"]},"type":"journal_article","date_updated":"2025-09-04T13:18:02Z","day":"01","file_date_updated":"2024-04-02T08:42:17Z","intvolume":"       529","publication_status":"published","issue":"3","arxiv":1,"external_id":{"arxiv":["2305.15346"],"isi":["001188770300019"]},"DOAJ_listed":"1","oa_version":"Published Version","doi":"10.1093/mnras/stae673","file":[{"checksum":"1e65c40a71e565eebdc4c5ff11822ba2","content_type":"application/pdf","file_size":2626735,"file_id":"15255","relation":"main_file","access_level":"open_access","creator":"dernst","file_name":"2024_MonthlyNRoyalAstronSoc_Matthee.pdf","date_created":"2024-04-02T08:42:17Z","date_updated":"2024-04-02T08:42:17Z","success":1}],"author":[{"first_name":"Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720","orcid":"0000-0003-2871-127X","last_name":"Matthee","full_name":"Matthee, Jorryt J"},{"last_name":"Golling","full_name":"Golling, Christopher","first_name":"Christopher"},{"full_name":"Mackenzie, Ruari","last_name":"Mackenzie","first_name":"Ruari"},{"first_name":"Gabriele","full_name":"Pezzulli, Gabriele","last_name":"Pezzulli"},{"first_name":"Simon","last_name":"Lilly","full_name":"Lilly, Simon"},{"last_name":"Schaye","full_name":"Schaye, Joop","first_name":"Joop"},{"last_name":"Bacon","full_name":"Bacon, Roland","first_name":"Roland"},{"full_name":"Kusakabe, Haruka","last_name":"Kusakabe","first_name":"Haruka"},{"full_name":"Urrutia, Tanya","last_name":"Urrutia","first_name":"Tanya"},{"full_name":"Boogaard, Leindert","last_name":"Boogaard","first_name":"Leindert"},{"last_name":"Brinchmann","full_name":"Brinchmann, Jarle","first_name":"Jarle"},{"full_name":"Maseda, Michael V.","last_name":"Maseda","first_name":"Michael V."},{"first_name":"Thibault","full_name":"Garel, Thibault","last_name":"Garel"},{"first_name":"Nicolas F.","last_name":"Bouché","full_name":"Bouché, Nicolas F."},{"first_name":"Lutz","full_name":"Wisotzki, Lutz","last_name":"Wisotzki"}]},{"scopus_import":"1","date_created":"2024-03-31T22:01:12Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"_id":"15250","abstract":[{"lang":"eng","text":"Orphan solute carrier (SLC) represents a group of membrane transporters whose exact functions and substrate specificities are not known. Elucidating the function and regulation of orphan SLC transporters is not only crucial for advancing our knowledge of cellular and molecular biology but can potentially lead to the development of new therapeutic strategies. Here, we provide evidence for the biological function of a ubiquitous orphan lysosomal SLC, the Major Facilitator Superfamily Domain-containing Protein 1 (MFSD1), which has remained phylogenetically unassigned. Targeted metabolomics revealed that dipeptides containing either lysine or arginine residues accumulate in lysosomes of cells lacking MFSD1. Whole-cell patch-clamp electrophysiological recordings of HEK293-cells expressing MFSD1 on the cell surface displayed transport affinities for positively charged dipeptides in the lower mM range, while dipeptides that carry a negative net charge were not transported. This was also true for single amino acids and tripeptides, which MFSD1 failed to transport. Our results identify MFSD1 as a highly selective lysosomal lysine/arginine/histidine-containing dipeptide exporter, which functions as a uniporter."}],"article_type":"original","acknowledgement":"We thank the Metabolomics Facility at Vienna BioCenter Core Facilities, which is a member of the Vienna BioCenter and funded by the City of Vienna through the Vienna Business Agency (shared research facility), for the LC–MS/MS analysis; and the BioImaging Facility at IST Austria for technical support and assistance. The authors want to thank N. Kastner for help with the live  cell  imaging  and  A.  Korošec  for  help  with  flow  cytometry.  This  work  was  supported by the Austrian Science Fund (FWF), grant P 36621- B (to M.R.), grant P 36667 (to W.S.), and core funding from IST Austria (to D.S.).","publisher":"National Academy of Sciences","isi":1,"corr_author":"1","oa":1,"status":"public","publication":"Proceedings of the National Academy of Sciences of the United States of America","month":"03","ddc":["570"],"quality_controlled":"1","acknowledged_ssus":[{"_id":"Bio"}],"year":"2024","type":"journal_article","publication_identifier":{"eissn":["1091-6490"]},"date_updated":"2025-09-04T13:19:02Z","day":"26","file_date_updated":"2024-04-02T08:54:28Z","has_accepted_license":"1","department":[{"_id":"DaSi"}],"language":[{"iso":"eng"}],"date_published":"2024-03-26T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_processing_charge":"Yes (in subscription journal)","volume":121,"citation":{"chicago":"Boytsov, Danila, Gregor M. Madej, Georg Horn, Nadine Blaha, Thomas Köcher, Harald H. Sitte, Daria E Siekhaus, Christine Ziegler, Walter Sandtner, and Marko Roblek. “Orphan Lysosomal Solute Carrier MFSD1 Facilitates Highly Selective Dipeptide Transport.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences, 2024. <a href=\"https://doi.org/10.1073/pnas.2319686121\">https://doi.org/10.1073/pnas.2319686121</a>.","apa":"Boytsov, D., Madej, G. M., Horn, G., Blaha, N., Köcher, T., Sitte, H. H., … Roblek, M. (2024). Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide transport. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2319686121\">https://doi.org/10.1073/pnas.2319686121</a>","ieee":"D. Boytsov <i>et al.</i>, “Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide transport,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 121, no. 13. National Academy of Sciences, 2024.","ama":"Boytsov D, Madej GM, Horn G, et al. Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide transport. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2024;121(13). doi:<a href=\"https://doi.org/10.1073/pnas.2319686121\">10.1073/pnas.2319686121</a>","short":"D. Boytsov, G.M. Madej, G. Horn, N. Blaha, T. Köcher, H.H. Sitte, D.E. Siekhaus, C. Ziegler, W. Sandtner, M. Roblek, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).","mla":"Boytsov, Danila, et al. “Orphan Lysosomal Solute Carrier MFSD1 Facilitates Highly Selective Dipeptide Transport.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 121, no. 13, e2319686121, National Academy of Sciences, 2024, doi:<a href=\"https://doi.org/10.1073/pnas.2319686121\">10.1073/pnas.2319686121</a>.","ista":"Boytsov D, Madej GM, Horn G, Blaha N, Köcher T, Sitte HH, Siekhaus DE, Ziegler C, Sandtner W, Roblek M. 2024. Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide transport. Proceedings of the National Academy of Sciences of the United States of America. 121(13), e2319686121."},"title":"Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide transport","article_number":"e2319686121","publication_status":"published","issue":"13","intvolume":"       121","doi":"10.1073/pnas.2319686121","author":[{"last_name":"Boytsov","full_name":"Boytsov, Danila","first_name":"Danila"},{"first_name":"Gregor M.","full_name":"Madej, Gregor M.","last_name":"Madej"},{"first_name":"Georg","last_name":"Horn","full_name":"Horn, Georg"},{"last_name":"Blaha","full_name":"Blaha, Nadine","first_name":"Nadine"},{"full_name":"Köcher, Thomas","last_name":"Köcher","first_name":"Thomas"},{"last_name":"Sitte","full_name":"Sitte, Harald H.","first_name":"Harald H."},{"id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","first_name":"Daria E","full_name":"Siekhaus, Daria E","last_name":"Siekhaus","orcid":"0000-0001-8323-8353"},{"first_name":"Christine","last_name":"Ziegler","full_name":"Ziegler, Christine"},{"first_name":"Walter","full_name":"Sandtner, Walter","last_name":"Sandtner"},{"first_name":"Marko","id":"3047D808-F248-11E8-B48F-1D18A9856A87","last_name":"Roblek","orcid":"0000-0001-9588-1389","full_name":"Roblek, Marko"}],"file":[{"success":1,"date_created":"2024-04-02T08:54:28Z","date_updated":"2024-04-02T08:54:28Z","creator":"dernst","file_name":"2024_PNAS_Boytsov.pdf","access_level":"open_access","relation":"main_file","content_type":"application/pdf","file_id":"15256","file_size":2483787,"checksum":"06f9e60b1146a685d58bf33999422fa8"}],"oa_version":"Published Version","external_id":{"pmid":["38507452"],"isi":["001206419000003"]},"pmid":1},{"title":"Structure and function of the Arabidopsis ABC transporter ABCB19 in brassinosteroid export","citation":{"ama":"Ying W, Wang Y, Wei H, et al. Structure and function of the Arabidopsis ABC transporter ABCB19 in brassinosteroid export. <i>Science</i>. 2024;383(6689):eadj4591. doi:<a href=\"https://doi.org/10.1126/science.adj4591\">10.1126/science.adj4591</a>","chicago":"Ying, Wei, Yaowei Wang, Hong Wei, Yongming Luo, Qian Ma, Heyuan Zhu, Hilde Janssens, et al. “Structure and Function of the Arabidopsis ABC Transporter ABCB19 in Brassinosteroid Export.” <i>Science</i>. American Association for the Advancement of Science, 2024. <a href=\"https://doi.org/10.1126/science.adj4591\">https://doi.org/10.1126/science.adj4591</a>.","apa":"Ying, W., Wang, Y., Wei, H., Luo, Y., Ma, Q., Zhu, H., … Sun, L. (2024). Structure and function of the Arabidopsis ABC transporter ABCB19 in brassinosteroid export. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.adj4591\">https://doi.org/10.1126/science.adj4591</a>","ieee":"W. Ying <i>et al.</i>, “Structure and function of the Arabidopsis ABC transporter ABCB19 in brassinosteroid export,” <i>Science</i>, vol. 383, no. 6689. American Association for the Advancement of Science, p. eadj4591, 2024.","short":"W. Ying, Y. Wang, H. Wei, Y. Luo, Q. Ma, H. Zhu, H. Janssens, N. Vukašinović, M. Kvasnica, J.M. Winne, Y. Gao, S. Tan, J. Friml, X. Liu, E. Russinova, L. Sun, Science 383 (2024) eadj4591.","mla":"Ying, Wei, et al. “Structure and Function of the Arabidopsis ABC Transporter ABCB19 in Brassinosteroid Export.” <i>Science</i>, vol. 383, no. 6689, American Association for the Advancement of Science, 2024, p. eadj4591, doi:<a href=\"https://doi.org/10.1126/science.adj4591\">10.1126/science.adj4591</a>.","ista":"Ying W, Wang Y, Wei H, Luo Y, Ma Q, Zhu H, Janssens H, Vukašinović N, Kvasnica M, Winne JM, Gao Y, Tan S, Friml J, Liu X, Russinova E, Sun L. 2024. Structure and function of the Arabidopsis ABC transporter ABCB19 in brassinosteroid export. Science. 383(6689), eadj4591."},"volume":383,"article_processing_charge":"No","main_file_link":[{"url":"http://hdl.handle.net/1854/LU-01HTMBK3P3PPNB73YFCMFXP3ZZ","open_access":"1"}],"OA_type":"green","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_published":"2024-03-22T00:00:00Z","language":[{"iso":"eng"}],"department":[{"_id":"JiFr"}],"day":"22","date_updated":"2025-09-04T13:19:48Z","year":"2024","publication_identifier":{"eissn":["1095-9203"]},"type":"journal_article","quality_controlled":"1","month":"03","publication":"Science","oa":1,"status":"public","isi":1,"publisher":"American Association for the Advancement of Science","article_type":"original","acknowledgement":"We thank the Cryo-EM Center of the University of Science and Technology of China for the EM facility support, Y. Yin (Iowa State University, Ames, IA, USA) for providing the anti-BES1 antibody, Y. Gao and all other staff members for their technical support on cryo-EM data collection, S. Vanneste (VIB, Ghent University, Ghent, Belgium) for useful discussions, and M. De Cock for help in preparing the manuscript.\r\nThis work was supported by the National Natural Science Foundation of China (grants 31870732 and 32322041 to L.S., grant 31900885 to X.L., and grant 32321001 to L.S.); the Strategic Priority Research Program of the Chinese Academy of Sciences (grant XDB37020103 to L.S.); the Natural Science Foundation of Anhui Province (grant 2008085MC90 to X.L. and grant 2008085J15 to L.S.); Fundamental Research Funds for the Central Universities (grant WK9100000031 to L.S.); USTC Research Funds of the Double First-Class Initiative (grant YD9100002004 to L.S. and grant YD9100002020 to X.L.); Research Foundation-Flanders (grant G002121N to E.R. and postdoctoral fellowships 12R7822N and 12R7819N to N.V.); and Chinese Scholarship Council predoctoral fellowships (Y.W. and H.Z.). L.S. is supported by an Outstanding Young Scholar Award from the Qiu Shi Science and Technologies Foundation and a Young Scholar Award from the Cyrus Tang Foundation.","abstract":[{"lang":"eng","text":"Brassinosteroids are steroidal phytohormones that regulate plant development and physiology, including adaptation to environmental stresses. Brassinosteroids are synthesized in the cell interior but bind receptors at the cell surface, necessitating a yet to be identified export mechanism. Here, we show that a member of the ATP-binding cassette (ABC) transporter superfamily, ABCB19, functions as a brassinosteroid exporter. We present its structure in both the substrate-unbound and the brassinosteroid-bound states. Bioactive brassinosteroids are potent activators of ABCB19 ATP hydrolysis activity, and transport assays showed that ABCB19 transports brassinosteroids. In Arabidopsis thaliana, ABCB19 and its close homolog, ABCB1, positively regulate brassinosteroid responses. Our results uncover an elusive export mechanism for bioactive brassinosteroids that is tightly coordinated with brassinosteroid signaling."}],"_id":"15251","OA_place":"repository","date_created":"2024-03-31T22:01:12Z","page":"eadj4591","scopus_import":"1","pmid":1,"external_id":{"pmid":["38513023"],"isi":["001252955200028"]},"oa_version":"Submitted Version","author":[{"full_name":"Ying, Wei","last_name":"Ying","first_name":"Wei"},{"full_name":"Wang, Yaowei","last_name":"Wang","first_name":"Yaowei"},{"last_name":"Wei","full_name":"Wei, Hong","first_name":"Hong"},{"last_name":"Luo","full_name":"Luo, Yongming","first_name":"Yongming"},{"last_name":"Ma","full_name":"Ma, Qian","first_name":"Qian"},{"first_name":"Heyuan","full_name":"Zhu, Heyuan","last_name":"Zhu"},{"full_name":"Janssens, Hilde","last_name":"Janssens","first_name":"Hilde"},{"first_name":"Nemanja","full_name":"Vukašinović, Nemanja","last_name":"Vukašinović"},{"first_name":"Miroslav","last_name":"Kvasnica","full_name":"Kvasnica, Miroslav"},{"full_name":"Winne, Johan M.","last_name":"Winne","first_name":"Johan M."},{"full_name":"Gao, Yongxiang","last_name":"Gao","first_name":"Yongxiang"},{"full_name":"Tan, Shutang","orcid":"0000-0002-0471-8285","last_name":"Tan","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","first_name":"Shutang"},{"full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří"},{"first_name":"Xin","last_name":"Liu","full_name":"Liu, Xin"},{"full_name":"Russinova, Eugenia","last_name":"Russinova","first_name":"Eugenia"},{"last_name":"Sun","full_name":"Sun, Linfeng","first_name":"Linfeng"}],"doi":"10.1126/science.adj4591","intvolume":"       383","issue":"6689","publication_status":"published"},{"type":"journal_article","year":"2024","publication_identifier":{"eissn":["1848-8013"],"issn":["1331-0623"]},"date_updated":"2025-04-14T12:59:08Z","day":"01","department":[{"_id":"JaMa"}],"date_published":"2024-01-01T00:00:00Z","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2304.11348"}],"article_processing_charge":"No","project":[{"grant_number":"E208","name":"Configuration Spaces over Non-Smooth Spaces","_id":"34dbf174-11ca-11ed-8bc3-afe9d43d4b9c"}],"volume":29,"title":"A characterization of maps of bounded compression","citation":{"ista":"Dello Schiavo L. 2024. A characterization of maps of bounded compression. Mathematical Communications. 29(1), 137–142.","mla":"Dello Schiavo, Lorenzo. “A Characterization of Maps of Bounded Compression.” <i>Mathematical Communications</i>, vol. 29, no. 1, Udruga Matematicara Osijek, 2024, pp. 137–42.","short":"L. Dello Schiavo, Mathematical Communications 29 (2024) 137–142.","apa":"Dello Schiavo, L. (2024). A characterization of maps of bounded compression. <i>Mathematical Communications</i>. Udruga Matematicara Osijek.","chicago":"Dello Schiavo, Lorenzo. “A Characterization of Maps of Bounded Compression.” <i>Mathematical Communications</i>. Udruga Matematicara Osijek, 2024.","ama":"Dello Schiavo L. A characterization of maps of bounded compression. <i>Mathematical Communications</i>. 2024;29(1):137-142.","ieee":"L. Dello Schiavo, “A characterization of maps of bounded compression,” <i>Mathematical Communications</i>, vol. 29, no. 1. Udruga Matematicara Osijek, pp. 137–142, 2024."},"_id":"15252","scopus_import":"1","page":"137-142","date_created":"2024-03-31T22:01:12Z","abstract":[{"text":"A measurable map between measure spaces is shown to have bounded compression if and only if its image via the measure-algebra functor is Lipschitz-continuous w.r.t. the measure-algebra distances. This provides a natural interpretation of maps of bounded compression/deformation by means of the measure-algebra functor and corrobo-rates the assertion that maps of bounded deformation are a natural class of morphisms for the category of complete and separable metric measure spaces.","lang":"eng"}],"article_type":"original","acknowledgement":"The author gratefully acknowledges funding of his current position by the Austrian Science\r\nFund (FWF), grant ESPRIT208. He is grateful to Enrico Pasqualetto for pointing out some\r\nreferences on maps of bounded compression.","publisher":"Udruga Matematicara Osijek","corr_author":"1","publication":"Mathematical Communications","month":"01","oa":1,"status":"public","quality_controlled":"1","author":[{"first_name":"Lorenzo","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","last_name":"Dello Schiavo","orcid":"0000-0002-9881-6870","full_name":"Dello Schiavo, Lorenzo"}],"oa_version":"Preprint","external_id":{"arxiv":["2304.11348"]},"arxiv":1,"issue":"1","publication_status":"published","intvolume":"        29"},{"author":[{"id":"540c9bbd-f2de-11ec-812d-d04a5be85630","first_name":"Monika H","full_name":"Henzinger, Monika H","last_name":"Henzinger","orcid":"0000-0002-5008-6530"},{"full_name":"Upadhyay, Jalaj","last_name":"Upadhyay","first_name":"Jalaj"},{"first_name":"Sarvagya","last_name":"Upadhyay","full_name":"Upadhyay, Sarvagya"}],"doi":"10.1137/1.9781611977912.38","oa_version":"Preprint","external_id":{"arxiv":["2307.08970"]},"arxiv":1,"publication_status":"published","intvolume":"      2024","day":"04","date_updated":"2025-04-14T13:50:49Z","type":"conference","year":"2024","publication_identifier":{"eisbn":["9781611977912"]},"date_published":"2024-01-04T00:00:00Z","language":[{"iso":"eng"}],"department":[{"_id":"MoHe"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2307.08970","open_access":"1"}],"article_processing_charge":"No","conference":{"location":"Alexandria, VA, United States","end_date":"2024-01-10","name":"SODA: Symposium on Discrete Algorithms","start_date":"2024-01-07"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"A unifying framework for differentially private sums under continual observation","citation":{"short":"M. Henzinger, J. Upadhyay, S. Upadhyay, in:, Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2024, pp. 995–1018.","mla":"Henzinger, Monika, et al. “A Unifying Framework for Differentially Private Sums under Continual Observation.” <i>Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms</i>, vol. 2024, Society for Industrial and Applied Mathematics, 2024, pp. 995–1018, doi:<a href=\"https://doi.org/10.1137/1.9781611977912.38\">10.1137/1.9781611977912.38</a>.","ista":"Henzinger M, Upadhyay J, Upadhyay S. 2024. A unifying framework for differentially private sums under continual observation. Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms vol. 2024, 995–1018.","apa":"Henzinger, M., Upadhyay, J., &#38; Upadhyay, S. (2024). A unifying framework for differentially private sums under continual observation. In <i>Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms</i> (Vol. 2024, pp. 995–1018). Alexandria, VA, United States: Society for Industrial and Applied Mathematics. <a href=\"https://doi.org/10.1137/1.9781611977912.38\">https://doi.org/10.1137/1.9781611977912.38</a>","ama":"Henzinger M, Upadhyay J, Upadhyay S. A unifying framework for differentially private sums under continual observation. In: <i>Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms</i>. Vol 2024. Society for Industrial and Applied Mathematics; 2024:995-1018. doi:<a href=\"https://doi.org/10.1137/1.9781611977912.38\">10.1137/1.9781611977912.38</a>","ieee":"M. Henzinger, J. Upadhyay, and S. Upadhyay, “A unifying framework for differentially private sums under continual observation,” in <i>Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms</i>, Alexandria, VA, United States, 2024, vol. 2024, pp. 995–1018.","chicago":"Henzinger, Monika, Jalaj Upadhyay, and Sarvagya Upadhyay. “A Unifying Framework for Differentially Private Sums under Continual Observation.” In <i>Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms</i>, 2024:995–1018. Society for Industrial and Applied Mathematics, 2024. <a href=\"https://doi.org/10.1137/1.9781611977912.38\">https://doi.org/10.1137/1.9781611977912.38</a>."},"project":[{"grant_number":"101019564","name":"The design and evaluation of modern fully dynamic data structures","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","call_identifier":"H2020"},{"_id":"34def286-11ca-11ed-8bc3-da5948e1613c","grant_number":"Z00422","name":"Efficient algorithms"},{"grant_number":"I05982","name":"Static and Dynamic Hierarchical Graph Decompositions","_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103"},{"_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe","name":"Fast Algorithms for a Reactive Network Layer","grant_number":"P33775"}],"volume":2024,"_id":"15253","page":"995-1018","date_created":"2024-03-31T22:01:13Z","scopus_import":"1","publisher":"Society for Industrial and Applied Mathematics","ec_funded":1,"abstract":[{"text":"We study the problem of maintaining a differentially private decaying sum under continual observation. We give a unifying framework and an efficient algorithm for this problem for any sufficiently smooth function. Our algorithm is the first differentially private algorithm that does not have a multiplicative error for polynomially decaying weights. Our algorithm improves on all prior works on differentially private decaying sums under continual observation and recovers exactly the additive error for the special case of continual counting from Henzinger et al. (SODA 2023) as a corollary.\r\nOur algorithm is a variant of the matrix mechanism whose error depends on the γ2 and γF norm of the underlying matrix. We give a constructive proof for an almost exact upper bound on the γ2 and γF norm and an almost tight lower bound on the γ2 norm for a large class of lower-triangular matrices. This is the first non-trivial lower bound for lower-triangular matrices whose non-zero entries are not all the same. It includes matrices for all continual decaying sums problems, resulting in an upper bound on the additive error of any differentially private decaying sums algorithm under continual observation.\r\nWe also explore some implications of our result in discrepancy theory and operator algebra. Given the importance of the γ2 norm in computer science and the extensive work in mathematics, we believe our result will have further applications.","lang":"eng"}],"acknowledgement":"This  project  has  received  funding  from  the  European  Research  Council  (ERC)under the European Union’s Horizon 2020 research and innovation programme (Grant agreement No.101019564 “The Design of Modern Fully Dynamic Data Structures (MoDynStruct)” and the AustrianScience Fund (FWF) project Z 422-N, project “Static and Dynamic Hierarchical Graph Decompositions”, I 5982-N, andproject “Fast Algorithms for a Reactive Network Layer (ReactNet)”, P 33775-N, with additional funding from the netideeSCIENCE  Stiftung,  2020–2024.   JU’s  research  was  funded  by  the  Decanal  Research  Grant.   We  thank  the  anonymousreviewers for their useful feedback and pointing us to the results in Matousek et al","month":"01","publication":"Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms","oa":1,"status":"public","corr_author":"1","quality_controlled":"1"},{"publication_identifier":{"issn":["2050-084X"]},"type":"journal_article","year":"2024","date_updated":"2025-04-23T07:45:02Z","day":"05","file_date_updated":"2024-04-03T13:18:00Z","department":[{"_id":"JiFr"}],"has_accepted_license":"1","language":[{"iso":"eng"}],"date_published":"2024-03-05T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes","volume":12,"project":[{"name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985","call_identifier":"H2020","_id":"261099A6-B435-11E9-9278-68D0E5697425"},{"_id":"26538374-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"I03630","name":"Molecular mechanisms of endocytic cargo recognition in plants"}],"citation":{"ieee":"I. Kulich, J. Schmid, A. Teplova, L. Qi, and J. Friml, “Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism,” <i>eLife</i>, vol. 12. eLife Sciences Publications, 2024.","chicago":"Kulich, Ivan, Julia Schmid, Anastasiia Teplova, Linlin Qi, and Jiří Friml. “Rapid Translocation of NGR Proteins Driving Polarization of PIN-Activating D6 Protein Kinase during Root Gravitropism.” <i>ELife</i>. eLife Sciences Publications, 2024. <a href=\"https://doi.org/10.7554/elife.91523\">https://doi.org/10.7554/elife.91523</a>.","ama":"Kulich I, Schmid J, Teplova A, Qi L, Friml J. Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism. <i>eLife</i>. 2024;12. doi:<a href=\"https://doi.org/10.7554/elife.91523\">10.7554/elife.91523</a>","apa":"Kulich, I., Schmid, J., Teplova, A., Qi, L., &#38; Friml, J. (2024). Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.91523\">https://doi.org/10.7554/elife.91523</a>","mla":"Kulich, Ivan, et al. “Rapid Translocation of NGR Proteins Driving Polarization of PIN-Activating D6 Protein Kinase during Root Gravitropism.” <i>ELife</i>, vol. 12, 91523, eLife Sciences Publications, 2024, doi:<a href=\"https://doi.org/10.7554/elife.91523\">10.7554/elife.91523</a>.","ista":"Kulich I, Schmid J, Teplova A, Qi L, Friml J. 2024. Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism. eLife. 12, 91523.","short":"I. Kulich, J. Schmid, A. Teplova, L. Qi, J. Friml, ELife 12 (2024)."},"title":"Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism","keyword":["General Immunology and Microbiology","General Biochemistry","Genetics and Molecular Biology","General Medicine","General Neuroscience"],"scopus_import":"1","date_created":"2024-04-02T11:35:58Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"_id":"15257","article_type":"original","acknowledgement":"The research leading to these results has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme grant agreement No 742985 and Austrian Science Fund (FWF): I3630-775 B25 to J.F. This research was also supported by the Lab Support Facility (LSF) and the Imaging and Optics Facility (IOF) of IST Austria, namely Tereza Bělinová for her help with the imaging. JS was supported by FemTECH fellowship.","abstract":[{"lang":"eng","text":"Root gravitropic bending represents a fundamental aspect of terrestrial plant physiology. Gravity is perceived by sedimentation of starch-rich plastids (statoliths) to the bottom of the central root cap cells. Following gravity perception, intercellular auxin transport is redirected downwards leading to an asymmetric auxin accumulation at the lower root side causing inhibition of cell expansion, ultimately resulting in downwards bending. How gravity-induced statoliths repositioning is translated into asymmetric auxin distribution remains unclear despite PIN auxin efflux carriers and the Negative Gravitropic Response of roots (NGR) proteins polarize along statolith sedimentation, thus providing a plausible mechanism for auxin flow redirection. In this study, using a functional NGR1-GFP construct, we visualized the NGR1 localization on the statolith surface and plasma membrane (PM) domains in close proximity to the statoliths, correlating with their movements. We determined that NGR1 binding to these PM domains is indispensable for NGR1 functionality and relies on cysteine acylation and adjacent polybasic regions as well as on lipid and sterol PM composition. Detailed timing of the early events following graviperception suggested that both NGR1 repolarization and initial auxin asymmetry precede the visible PIN3 polarization. This discrepancy motivated us to unveil a rapid, NGR-dependent translocation of PIN-activating AGCVIII kinase D6PK towards lower PMs of gravity-perceiving cells, thus providing an attractive model for rapid redirection of auxin fluxes following gravistimulation."}],"ec_funded":1,"publisher":"eLife Sciences Publications","corr_author":"1","oa":1,"status":"public","publication":"eLife","month":"03","quality_controlled":"1","ddc":["580"],"acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"Bio"}],"doi":"10.7554/elife.91523","author":[{"first_name":"Ivan","id":"57a1567c-8314-11eb-9063-c9ddc3451a54","last_name":"Kulich","full_name":"Kulich, Ivan"},{"id":"07cf4637-baaf-11ee-9227-e1de57d1d69b","first_name":"Julia","full_name":"Schmid, Julia","last_name":"Schmid"},{"first_name":"Anastasiia","id":"e3736151-106c-11ec-b916-c2558e2762c6","last_name":"Teplova","full_name":"Teplova, Anastasiia"},{"orcid":"0000-0001-5187-8401","last_name":"Qi","full_name":"Qi, Linlin","first_name":"Linlin","id":"44B04502-A9ED-11E9-B6FC-583AE6697425"},{"full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří"}],"file":[{"file_name":"2024_eLife_Kulich.pdf","creator":"dernst","date_updated":"2024-04-03T13:18:00Z","date_created":"2024-04-03T13:18:00Z","success":1,"checksum":"a73a84d3bf97a6d09d24308ca6dd0a0c","content_type":"application/pdf","file_size":11451904,"file_id":"15288","access_level":"open_access","relation":"main_file"}],"oa_version":"Published Version","external_id":{"pmid":["38441122"]},"DOAJ_listed":"1","pmid":1,"related_material":{"link":[{"description":"News on ISTA website","relation":"press_release","url":"https://ista.ac.at/en/news/beneath-the-surface/"}]},"article_number":"91523","publication_status":"published","intvolume":"        12"},{"has_accepted_license":"1","department":[{"_id":"TiVo"}],"language":[{"iso":"eng"}],"date_published":"2024-03-01T00:00:00Z","type":"journal_article","year":"2024","publication_identifier":{"issn":["1553-7358"]},"day":"01","date_updated":"2025-09-04T13:24:19Z","file_date_updated":"2024-04-03T13:29:36Z","volume":20,"citation":{"ama":"Hall SM, Kochin D, Carne C, et al. Ten simple rules for pushing boundaries of inclusion at academic events. <i>PLOS Computational Biology</i>. 2024;20(3). doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1011797\">10.1371/journal.pcbi.1011797</a>","apa":"Hall, S. M., Kochin, D., Carne, C., Herterich, P., Lewers, K. L., Abdelhack, M., … Sharan, M. (2024). Ten simple rules for pushing boundaries of inclusion at academic events. <i>PLOS Computational Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1011797\">https://doi.org/10.1371/journal.pcbi.1011797</a>","ieee":"S. M. Hall <i>et al.</i>, “Ten simple rules for pushing boundaries of inclusion at academic events,” <i>PLOS Computational Biology</i>, vol. 20, no. 3. Public Library of Science, 2024.","chicago":"Hall, Siobhan Mackenzie, Daniel Kochin, Carmel Carne, Patricia Herterich, Kristen Lenay Lewers, Mohamed Abdelhack, Arun Ramasubramanian, et al. “Ten Simple Rules for Pushing Boundaries of Inclusion at Academic Events.” <i>PLOS Computational Biology</i>. Public Library of Science, 2024. <a href=\"https://doi.org/10.1371/journal.pcbi.1011797\">https://doi.org/10.1371/journal.pcbi.1011797</a>.","short":"S.M. Hall, D. Kochin, C. Carne, P. Herterich, K.L. Lewers, M. Abdelhack, A. Ramasubramanian, J.F. Michael Alphonse, V. Ung, S. El-Gebali, C. Currin, E. Plomp, R. Thompson, M. Sharan, PLOS Computational Biology 20 (2024).","mla":"Hall, Siobhan Mackenzie, et al. “Ten Simple Rules for Pushing Boundaries of Inclusion at Academic Events.” <i>PLOS Computational Biology</i>, vol. 20, no. 3, e1011797, Public Library of Science, 2024, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1011797\">10.1371/journal.pcbi.1011797</a>.","ista":"Hall SM, Kochin D, Carne C, Herterich P, Lewers KL, Abdelhack M, Ramasubramanian A, Michael Alphonse JF, Ung V, El-Gebali S, Currin C, Plomp E, Thompson R, Sharan M. 2024. Ten simple rules for pushing boundaries of inclusion at academic events. PLOS Computational Biology. 20(3), e1011797."},"title":"Ten simple rules for pushing boundaries of inclusion at academic events","OA_type":"gold","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_processing_charge":"Yes","acknowledgement":"We would like to recognise the feedback and ideas shared with us by all attendees during the\r\nfocus groups that contributed to the development of this paper. Acknowledgements are given\r\nto Elisee Jafsia, Umar Farouk Ahmad, Zohra Slim, Mizanur Rahman, Rev. Katie Tupling,\r\nChristopher Emmanuel, Abdalrhman Mostafa, Pradeep Eranti, Toby Hodges, Avishkar\r\nBhoopchand, and Carolyn Dickson. We would like to thank our community members and\r\nacknowledge their bravery for sharing their stories that shaped the narrative of these Ten Simple\r\nRules. The stories shared with us formed the case studies, and while they are anonymous\r\nfor privacy and protection reasons, it is these stories that were on our mind during the entire\r\nprocess and kept us going. We acknowledge the efforts of the organisers that contribute to the\r\nhighly successful events that are the inspiration for the ideas presented here: the Deep\r\nLearning Indaba, Neuromatch Academy, the IBRO Simons Computational Neuroscience\r\nImbizo, and OLS. OLS also supported this project through their mentorship programme,\r\nOpen Seeds.","abstract":[{"text":"Inclusion at academic events is facing increased scrutiny as the communities these events serve raise their expectations for who can practically attend. Active efforts in recent years to bring more diversity to academic events have brought progress and created momentum. However, we must reflect on these efforts and determine which underrepresented groups are being disadvantaged. Inclusion at academic events is important to ensure diversity of discourse and opinion, to help build networks, and to avoid academic siloing. All of these contribute to the development of a robust and resilient academic field. We have developed these Ten Simple Rules both to amplify the voices that have been speaking out and to celebrate the progress of many Equity, Diversity, and Inclusivity practices that continue to drive the organisation of academic events. The Rules aim to raise awareness as well as provide actionable suggestions and tools to support these initiatives further. This aims to support academic organisations such as the Deep Learning Indaba, Neuromatch Academy, the IBRO-Simons Computational Neuroscience Imbizo, Biodiversity Information Standards (TDWG), Arabs in Neuroscience, FAIRPoints, and OLS (formerly Open Life Science). This article is a call to action for organisers to reevaluate the impact and reach of their inclusive practices.","lang":"eng"}],"article_type":"original","publisher":"Public Library of Science","date_created":"2024-04-02T11:37:32Z","scopus_import":"1","OA_place":"publisher","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"_id":"15258","ddc":["000"],"quality_controlled":"1","isi":1,"oa":1,"status":"public","publication":"PLOS Computational Biology","month":"03","oa_version":"Published Version","doi":"10.1371/journal.pcbi.1011797","author":[{"first_name":"Siobhan Mackenzie","last_name":"Hall","full_name":"Hall, Siobhan Mackenzie"},{"first_name":"Daniel","full_name":"Kochin, Daniel","last_name":"Kochin"},{"first_name":"Carmel","full_name":"Carne, Carmel","last_name":"Carne"},{"last_name":"Herterich","full_name":"Herterich, Patricia","first_name":"Patricia"},{"full_name":"Lewers, Kristen Lenay","last_name":"Lewers","first_name":"Kristen Lenay"},{"first_name":"Mohamed","last_name":"Abdelhack","full_name":"Abdelhack, Mohamed"},{"first_name":"Arun","full_name":"Ramasubramanian, Arun","last_name":"Ramasubramanian"},{"last_name":"Michael Alphonse","full_name":"Michael Alphonse, Juno Felecia","first_name":"Juno Felecia"},{"last_name":"Ung","full_name":"Ung, Visotheary","first_name":"Visotheary"},{"full_name":"El-Gebali, Sara","last_name":"El-Gebali","first_name":"Sara"},{"orcid":"0000-0002-4809-5059","last_name":"Currin","full_name":"Currin, Christopher","first_name":"Christopher","id":"e8321fc5-3091-11eb-8a53-83f309a11ac9"},{"first_name":"Esther","full_name":"Plomp, Esther","last_name":"Plomp"},{"last_name":"Thompson","full_name":"Thompson, Rachel","first_name":"Rachel"},{"first_name":"Malvika","full_name":"Sharan, Malvika","last_name":"Sharan"}],"file":[{"file_size":858521,"file_id":"15289","content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"1f0f837c5b4341f54f6347370ed8c1b7","creator":"dernst","file_name":"2024_PloS_Hall.pdf","success":1,"date_created":"2024-04-03T13:29:36Z","date_updated":"2024-04-03T13:29:36Z"}],"pmid":1,"external_id":{"pmid":["38427633"],"isi":["001181690200005"]},"DOAJ_listed":"1","intvolume":"        20","publication_status":"published","article_number":"e1011797","issue":"3"},{"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"gold","article_processing_charge":"Yes","volume":132,"title":"Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder","citation":{"chicago":"Beyer, Chad, Christopher Currin, Taryn Williams, and Dan J. Stein. “Meta-Analysis of the Comparative Efficacy of Benzodiazepines and Antidepressants for Psychic versus Somatic Symptoms of Generalized Anxiety Disorder.” <i>Comprehensive Psychiatry</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.comppsych.2024.152479\">https://doi.org/10.1016/j.comppsych.2024.152479</a>.","ama":"Beyer C, Currin C, Williams T, Stein DJ. Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder. <i>Comprehensive Psychiatry</i>. 2024;132. doi:<a href=\"https://doi.org/10.1016/j.comppsych.2024.152479\">10.1016/j.comppsych.2024.152479</a>","ieee":"C. Beyer, C. Currin, T. Williams, and D. J. Stein, “Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder,” <i>Comprehensive Psychiatry</i>, vol. 132. Elsevier, 2024.","apa":"Beyer, C., Currin, C., Williams, T., &#38; Stein, D. J. (2024). Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder. <i>Comprehensive Psychiatry</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.comppsych.2024.152479\">https://doi.org/10.1016/j.comppsych.2024.152479</a>","mla":"Beyer, Chad, et al. “Meta-Analysis of the Comparative Efficacy of Benzodiazepines and Antidepressants for Psychic versus Somatic Symptoms of Generalized Anxiety Disorder.” <i>Comprehensive Psychiatry</i>, vol. 132, 152479, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.comppsych.2024.152479\">10.1016/j.comppsych.2024.152479</a>.","ista":"Beyer C, Currin C, Williams T, Stein DJ. 2024. Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms of generalized anxiety disorder. Comprehensive Psychiatry. 132, 152479.","short":"C. Beyer, C. Currin, T. Williams, D.J. Stein, Comprehensive Psychiatry 132 (2024)."},"year":"2024","type":"journal_article","publication_identifier":{"issn":["0010-440X"],"eissn":["1532-8384"]},"file_date_updated":"2025-01-13T10:47:20Z","date_updated":"2025-09-04T13:30:08Z","day":"01","has_accepted_license":"1","department":[{"_id":"TiVo"}],"language":[{"iso":"eng"}],"date_published":"2024-07-01T00:00:00Z","isi":1,"month":"07","publication":"Comprehensive Psychiatry","status":"public","oa":1,"quality_controlled":"1","ddc":["570"],"tmp":{"short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"_id":"15295","scopus_import":"1","date_created":"2024-04-07T22:00:55Z","article_type":"original","abstract":[{"lang":"eng","text":"Background: Benzodiazepines and antidepressants are effective agents for the treatment of generalized anxiety disorder (GAD), with the HAM-A frequently used as a primary outcome measure. The GAD literature is inconsistent regarding which medications are more effective for somatic versus psychic symptoms of GAD, and treatment guidelines do not advocate for prescribing based on subtype. This meta-analysis aimed to determine whether benzodiazepines and antidepressants have a differential impact on the somatic versus psychic subscales of the HAM-A in GAD.\r\n\r\nMethods: An electronic search was undertaken for randomized controlled trials of either benzodiazepines or antidepressants for GAD that reported treatment response using the HAM-A subscales. Data were extracted by independent reviewers. A random effects assessment of weighted mean difference with 95% confidence intervals and subgroup difference was applied. All analysis was done on SPSS 26. An assessment of bias, and of quality of evidence was performed.\r\n\r\nResults: 24 randomized controlled trials met the inclusion criteria: 18 antidepressant trials, 5 benzodiazepine trials and 1 of both. 14 studies were assessed as having between some and high risk of bias, while 10 were assessed as having low risk of bias. Benzodiazepines (WMD of 1.81 [CI 1.03, 2.58]) were significantly more effective than antidepressants (WMD of 0.83 [CI 0.64, 1.02]) for reducing somatic symptoms of GAD (Chi2 = 5.81, p = 0.02), and were also more effective (WMD of 2.46 [CI 1.83, 3.09]) in reducing psychic symptoms than antidepressants (WMD of 1.83 [CI 1.55, 2.10]), although this comparison did not reach statistical significance (Chi2 = 3.31, p = 0.07).\r\n\r\nConclusion: The finding that benzodiazepines were significantly more effective than antidepressants for somatic symptoms needs to be weighed up against potential benefits of antidepressants over benzodiazepines. It may be useful for future treatment guidelines for GAD to explicitly consider symptom subtype."}],"publisher":"Elsevier","external_id":{"pmid":["38564872"],"isi":["001221136000001"]},"DOAJ_listed":"1","pmid":1,"doi":"10.1016/j.comppsych.2024.152479","author":[{"full_name":"Beyer, Chad","last_name":"Beyer","first_name":"Chad"},{"full_name":"Currin, Christopher","last_name":"Currin","orcid":"0000-0002-4809-5059","id":"e8321fc5-3091-11eb-8a53-83f309a11ac9","first_name":"Christopher"},{"last_name":"Williams","full_name":"Williams, Taryn","first_name":"Taryn"},{"first_name":"Dan J.","last_name":"Stein","full_name":"Stein, Dan J."}],"file":[{"checksum":"aadb57448b5f170761ed72cbcc31ba16","content_type":"application/pdf","file_size":2874425,"file_id":"18839","access_level":"open_access","relation":"main_file","date_created":"2025-01-13T10:47:20Z","success":1,"date_updated":"2025-01-13T10:47:20Z","file_name":"2024_ComprehensivePsychiatry_Beyer.pdf","creator":"dernst"}],"oa_version":"Published Version","publication_status":"published","article_number":"152479","intvolume":"       132"},{"scopus_import":"1","date_created":"2024-04-07T22:00:55Z","_id":"15296","abstract":[{"text":"In this paper we build a constructive algorithm that returns a rectifiable curve that connects two points in a weakly convex set in a Hilbert space. We have proven that this algorithm converges and obtained an estimate on the curve’s length and compare the length of the curve obtained to known results.","lang":"eng"}],"publisher":"AIP Publishing","publication_status":"published","article_number":"080002","issue":"1","status":"public","publication":"AIP Conference Proceedings","month":"03","quality_controlled":"1","intvolume":"      3030","year":"2024","publication_identifier":{"issn":["0094-243X"],"eissn":["1551-7616"]},"type":"conference","doi":"10.1063/5.0195908","author":[{"first_name":"Mariana","last_name":"Lopushanski","full_name":"Lopushanski, Mariana"},{"id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E","first_name":"Grigory","full_name":"Ivanov, Grigory","last_name":"Ivanov"}],"date_updated":"2024-04-08T07:40:53Z","day":"14","department":[{"_id":"UlWa"}],"date_published":"2024-03-14T00:00:00Z","language":[{"iso":"eng"}],"oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"start_date":"2022-10-26","name":"ICCMSE: International Conference of Computational Methods in Sciences and Engiineering","end_date":"2022-10-29","location":"Virtual"},"article_processing_charge":"No","volume":3030,"citation":{"ista":"Lopushanski M, Ivanov G. 2024. A constructive algorithm for building rectifiable curves in weakly convex sets. AIP Conference Proceedings. ICCMSE: International Conference of Computational Methods in Sciences and Engiineering vol. 3030, 080002.","mla":"Lopushanski, Mariana, and Grigory Ivanov. “A Constructive Algorithm for Building Rectifiable Curves in Weakly Convex Sets.” <i>AIP Conference Proceedings</i>, vol. 3030, no. 1, 080002, AIP Publishing, 2024, doi:<a href=\"https://doi.org/10.1063/5.0195908\">10.1063/5.0195908</a>.","short":"M. Lopushanski, G. Ivanov, in:, AIP Conference Proceedings, AIP Publishing, 2024.","ieee":"M. Lopushanski and G. Ivanov, “A constructive algorithm for building rectifiable curves in weakly convex sets,” in <i>AIP Conference Proceedings</i>, Virtual, 2024, vol. 3030, no. 1.","apa":"Lopushanski, M., &#38; Ivanov, G. (2024). A constructive algorithm for building rectifiable curves in weakly convex sets. In <i>AIP Conference Proceedings</i> (Vol. 3030). Virtual: AIP Publishing. <a href=\"https://doi.org/10.1063/5.0195908\">https://doi.org/10.1063/5.0195908</a>","ama":"Lopushanski M, Ivanov G. A constructive algorithm for building rectifiable curves in weakly convex sets. In: <i>AIP Conference Proceedings</i>. Vol 3030. AIP Publishing; 2024. doi:<a href=\"https://doi.org/10.1063/5.0195908\">10.1063/5.0195908</a>","chicago":"Lopushanski, Mariana, and Grigory Ivanov. “A Constructive Algorithm for Building Rectifiable Curves in Weakly Convex Sets.” In <i>AIP Conference Proceedings</i>, Vol. 3030. AIP Publishing, 2024. <a href=\"https://doi.org/10.1063/5.0195908\">https://doi.org/10.1063/5.0195908</a>."},"title":"A constructive algorithm for building rectifiable curves in weakly convex sets"},{"issue":"10","publication_status":"published","intvolume":"        59","author":[{"last_name":"Hörmayer","orcid":"0000-0001-8295-2926","full_name":"Hörmayer, Lukas","first_name":"Lukas","id":"2EEE7A2A-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Juan C","id":"310A8E3E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9179-6099","last_name":"Montesinos López","full_name":"Montesinos López, Juan C"},{"first_name":"N","full_name":"Trozzi, N","last_name":"Trozzi"},{"last_name":"Spona","full_name":"Spona, Leonhard","first_name":"Leonhard","id":"b52391fb-f636-11ee-939c-8a8c47552e8a"},{"last_name":"Yoshida","full_name":"Yoshida, Saiko","first_name":"Saiko","id":"2E46069C-F248-11E8-B48F-1D18A9856A87"},{"id":"44E59624-F248-11E8-B48F-1D18A9856A87","first_name":"Petra","full_name":"Marhavá, Petra","last_name":"Marhavá"},{"full_name":"Caballero Mancebo, Silvia","orcid":"0000-0002-5223-3346","last_name":"Caballero Mancebo","id":"2F1E1758-F248-11E8-B48F-1D18A9856A87","first_name":"Silvia"},{"id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","full_name":"Benková, Eva","last_name":"Benková","orcid":"0000-0002-8510-9739"},{"first_name":"Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0912-4566","last_name":"Heisenberg","full_name":"Heisenberg, Carl-Philipp J"},{"last_name":"Dagdas","full_name":"Dagdas, Y","first_name":"Y"},{"last_name":"Majda","full_name":"Majda, M","first_name":"M"},{"orcid":"0000-0002-8302-7596","last_name":"Friml","full_name":"Friml, Jiří","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"file":[{"creator":"dernst","file_name":"2024_DevelopmentalCell_Hoermayer.pdf","success":1,"date_updated":"2024-08-20T11:22:16Z","date_created":"2024-08-20T11:22:16Z","checksum":"22b374fb50a40d380b7686c84258d271","access_level":"open_access","relation":"main_file","file_size":5195262,"file_id":"17452","content_type":"application/pdf"}],"doi":"10.1016/j.devcel.2024.03.009","oa_version":"Published Version","external_id":{"pmid":["38579717"],"isi":["001301584600001"]},"related_material":{"link":[{"description":"News on ISTA website","relation":"press_release","url":"https://ista.ac.at/en/news/how-plants-heal-wounds/"}]},"pmid":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"_id":"15301","date_created":"2024-04-08T12:07:57Z","page":"1333-1344.e4","scopus_import":"1","publisher":"Elsevier","ec_funded":1,"abstract":[{"text":"Plant morphogenesis relies exclusively on oriented cell expansion and division. Nonetheless, the mechanism(s) determining division plane orientation remain elusive. Here, we studied tissue healing after laser-assisted wounding in roots of Arabidopsis thaliana and uncovered how mechanical forces stabilize and reorient the microtubule cytoskeleton for the orientation of cell division. We identified that root tissue functions as an interconnected cell matrix, with a radial gradient of tissue extendibility causing predictable tissue deformation after wounding. This deformation causes instant redirection of expansion in the surrounding cells and reorientation of microtubule arrays, ultimately predicting cell division orientation. Microtubules are destabilized under low tension, whereas stretching of cells, either through wounding or external aspiration, immediately induces their polymerization. The higher microtubule abundance in the stretched cell parts leads to the reorientation of microtubule arrays and, ultimately, informs cell division planes. This provides a long-sought mechanism for flexible re-arrangement of cell divisions by mechanical forces for tissue reconstruction and plant architecture.","lang":"eng"}],"acknowledgement":"We are thankful to Simon Gilroy, Alexander Jones, and Lieven De Veylder for sharing published material. We thank the Imaging & Optics and Life Science Facilities at IST Austria, the Biooptics facility at GMI, and the Cellular Imaging Facility at DBMV UNIL for providing invaluable assistance. The research leading to these results has received funding from the European Research Council under the European Union's Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement no. 742985, from the FWF under the stand-alone grant P29988, and from EMBO (ALTF 253-2023).","article_type":"original","publication":"Developmental Cell","month":"05","status":"public","oa":1,"corr_author":"1","isi":1,"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"quality_controlled":"1","ddc":["570"],"file_date_updated":"2024-08-20T11:22:16Z","day":"20","date_updated":"2025-09-04T13:32:08Z","type":"journal_article","year":"2024","publication_identifier":{"eissn":["1878-1551"],"issn":["1534-5807"]},"language":[{"iso":"eng"}],"date_published":"2024-05-20T00:00:00Z","department":[{"_id":"JiFr"},{"_id":"EvBe"},{"_id":"CaHe"}],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization","citation":{"ista":"Hörmayer L, Montesinos López JC, Trozzi N, Spona L, Yoshida S, Marhavá P, Caballero Mancebo S, Benková E, Heisenberg C-PJ, Dagdas Y, Majda M, Friml J. 2024. Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization. Developmental Cell. 59(10), 1333–1344.e4.","mla":"Hörmayer, Lukas, et al. “Mechanical Forces in Plant Tissue Matrix Orient Cell Divisions via Microtubule Stabilization.” <i>Developmental Cell</i>, vol. 59, no. 10, Elsevier, 2024, p. 1333–1344.e4, doi:<a href=\"https://doi.org/10.1016/j.devcel.2024.03.009\">10.1016/j.devcel.2024.03.009</a>.","short":"L. Hörmayer, J.C. Montesinos López, N. Trozzi, L. Spona, S. Yoshida, P. Marhavá, S. Caballero Mancebo, E. Benková, C.-P.J. Heisenberg, Y. Dagdas, M. Majda, J. Friml, Developmental Cell 59 (2024) 1333–1344.e4.","apa":"Hörmayer, L., Montesinos López, J. C., Trozzi, N., Spona, L., Yoshida, S., Marhavá, P., … Friml, J. (2024). Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2024.03.009\">https://doi.org/10.1016/j.devcel.2024.03.009</a>","chicago":"Hörmayer, Lukas, Juan C Montesinos López, N Trozzi, Leonhard Spona, Saiko Yoshida, Petra Marhavá, Silvia Caballero Mancebo, et al. “Mechanical Forces in Plant Tissue Matrix Orient Cell Divisions via Microtubule Stabilization.” <i>Developmental Cell</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.devcel.2024.03.009\">https://doi.org/10.1016/j.devcel.2024.03.009</a>.","ieee":"L. Hörmayer <i>et al.</i>, “Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization,” <i>Developmental Cell</i>, vol. 59, no. 10. Elsevier, p. 1333–1344.e4, 2024.","ama":"Hörmayer L, Montesinos López JC, Trozzi N, et al. Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization. <i>Developmental Cell</i>. 2024;59(10):1333-1344.e4. doi:<a href=\"https://doi.org/10.1016/j.devcel.2024.03.009\">10.1016/j.devcel.2024.03.009</a>"},"project":[{"call_identifier":"H2020","_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985"},{"call_identifier":"FWF","_id":"262EF96E-B435-11E9-9278-68D0E5697425","name":"RNA-directed DNA methylation in plant development","grant_number":"P29988"}],"volume":59},{"publication_status":"published","article_number":"108011","intvolume":"       134","arxiv":1,"external_id":{"arxiv":["2311.04114"],"isi":["001238294600001"]},"doi":"10.1016/j.cnsns.2024.108011","author":[{"first_name":"Lokahith N","id":"cd100965-0804-11ed-9c55-f4878ff4e877","last_name":"Agasthya","full_name":"Agasthya, Lokahith N"},{"full_name":"Muller, Caroline J","last_name":"Muller","orcid":"0000-0001-5836-5350","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","first_name":"Caroline J"}],"file":[{"checksum":"9b7c2b8281d0b7bc7f08e0468168324c","access_level":"open_access","relation":"main_file","file_size":1257925,"file_id":"18795","content_type":"application/pdf","file_name":"2024_CommNonlinear_Agasthya.pdf","creator":"dernst","date_updated":"2025-01-09T09:05:31Z","date_created":"2025-01-09T09:05:31Z","success":1}],"oa_version":"Published Version","corr_author":"1","isi":1,"publication":"Communications in Nonlinear Science and Numerical Simulation","month":"07","status":"public","oa":1,"ddc":["550"],"quality_controlled":"1","acknowledged_ssus":[{"_id":"ScienComp"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"OA_place":"publisher","_id":"15313","date_created":"2024-04-14T22:01:01Z","scopus_import":"1","ec_funded":1,"abstract":[{"text":"Our goal is to investigate fundamental properties of the system of internally cooled convection. The system consists of an upward thermal flux at the lower boundary, a mean temperature lapse-rate and a constant cooling term in the bulk with the bulk cooling in thermal equilibrium with the input heat flux. This simple model represents idealised dry convection in the atmospheric boundary layer, where the cooling mimics the radiative cooling to space notably through longwave radiation. We perform linear stability analysis of the model for different values of the mean stratification to derive the critical forcing above which the fluid is convectively unstable to small perturbations. The dynamic behavior of the fluid system is described and the scaling of various important measured quantities such as the total vertical convective heat flux and the upward mass flux is measured. We introduce a lapse-rate dependent dimensionless Rayleigh-number Ray that determines the behavior of the system, finding that the convective heat-flux and mass-flux scale approximately as Ray0.5 and Ray0.7 respectively. The area-fraction of the domain that is occupied by upward and downward moving fluid and the skewness of the vertical velocity are studied to understand the asymmetry inherent in the system. We conclude with a short discussion on the relevance to atmospheric convection and the scope for further investigations of atmospheric convection using similar simplified approaches.","lang":"eng"}],"article_type":"original","acknowledgement":"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska–Curie grant agreement No. 101034413. CM gratefully acknowledges funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041). This research was supported by the Scientific Service Units (SSU) of IST Austria through resources provided by Scientific Computing (SciComp).","publisher":"Elsevier","OA_type":"hybrid","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_processing_charge":"Yes (via OA deal)","project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program"},{"grant_number":"805041","name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","_id":"629205d8-2b32-11ec-9570-e1356ff73576","call_identifier":"H2020"}],"volume":134,"title":"Dynamics and scaling of internally cooled convection","citation":{"apa":"Agasthya, L. N., &#38; Muller, C. J. (2024). Dynamics and scaling of internally cooled convection. <i>Communications in Nonlinear Science and Numerical Simulation</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cnsns.2024.108011\">https://doi.org/10.1016/j.cnsns.2024.108011</a>","chicago":"Agasthya, Lokahith N, and Caroline J Muller. “Dynamics and Scaling of Internally Cooled Convection.” <i>Communications in Nonlinear Science and Numerical Simulation</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.cnsns.2024.108011\">https://doi.org/10.1016/j.cnsns.2024.108011</a>.","ieee":"L. N. Agasthya and C. J. Muller, “Dynamics and scaling of internally cooled convection,” <i>Communications in Nonlinear Science and Numerical Simulation</i>, vol. 134. Elsevier, 2024.","ama":"Agasthya LN, Muller CJ. Dynamics and scaling of internally cooled convection. <i>Communications in Nonlinear Science and Numerical Simulation</i>. 2024;134. doi:<a href=\"https://doi.org/10.1016/j.cnsns.2024.108011\">10.1016/j.cnsns.2024.108011</a>","mla":"Agasthya, Lokahith N., and Caroline J. Muller. “Dynamics and Scaling of Internally Cooled Convection.” <i>Communications in Nonlinear Science and Numerical Simulation</i>, vol. 134, 108011, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.cnsns.2024.108011\">10.1016/j.cnsns.2024.108011</a>.","ista":"Agasthya LN, Muller CJ. 2024. Dynamics and scaling of internally cooled convection. Communications in Nonlinear Science and Numerical Simulation. 134, 108011.","short":"L.N. Agasthya, C.J. Muller, Communications in Nonlinear Science and Numerical Simulation 134 (2024)."},"publication_identifier":{"issn":["1007-5704"]},"year":"2024","type":"journal_article","file_date_updated":"2025-01-09T09:05:31Z","day":"01","date_updated":"2025-09-04T13:37:48Z","department":[{"_id":"CaMu"}],"has_accepted_license":"1","language":[{"iso":"eng"}],"date_published":"2024-07-01T00:00:00Z"},{"intvolume":"        88","article_number":"111464","publication_status":"published","external_id":{"isi":["001287584100001"]},"oa_version":"None","author":[{"first_name":"Neelima","full_name":"Mahato, Neelima","last_name":"Mahato"},{"id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","first_name":"Saurabh","full_name":"Singh, Saurabh","orcid":"0000-0003-2209-5269","last_name":"Singh"},{"last_name":"Sreekanth","full_name":"Sreekanth, T. V.M.","first_name":"T. V.M."},{"last_name":"Yoo","full_name":"Yoo, Kisoo","first_name":"Kisoo"},{"first_name":"Jonghoon","last_name":"Kim","full_name":"Kim, Jonghoon"}],"doi":"10.1016/j.est.2024.111464","quality_controlled":"1","status":"public","month":"05","publication":"Journal of Energy Storage","isi":1,"publisher":"Elsevier","article_type":"original","acknowledgement":"This work was supported by Korea Institute of Energy Technology Evaluation and Planning (KETEP); and Ministry of Trade, Industry & Energy (MOTIE), Republic of Korea (Grant No. \r\n20210501010020).","abstract":[{"text":"Development of electroactive materials exhibiting high performance with superior stability is crucial in the field of supercapacitors and battery research. We report on synthesis of highly stable composite of semi-polycrystalline polyaniline and graphene (SPani-graphene) and its application in supercapacitor electrodes. The electrochemical behavior and device performance of the electrodes were investigated through cyclic voltammetry (CV), galvanostatic charge-discharge GCD) and electrochemical impedance spectroscopy (EIS) in a 3-electrode and a 2-electrode (device) cell configurations, repectively. The cell specific capacitance (Cell Csp) achieved from the 2-electrode symmetric cell configuration was 525.5 F g−1 at 0.1 A g−1 using polymer gel electrolyte (PGE). The PGE in this work is xanthan gum jellied in 1 M aq. Na2SO4. The maximum energy density and power density achieved from the device was 46.7 Wh kg−1 and 16.16 kW kg−1, respectively, at 0.4 A g−1. Furthermore, the device exhibits an excellent retention of cell specific capacitance and coulombic efficiency of 97 % and 94 %, respectively, over 10,000 continuous GCD cycles, indicating an excellent rate capability as well as a promising power management. To investigate the material's electrochemical durability, a detailed EIS study has been carried out using both, 3-electrode, and 2-electrode cell configurations, before and after long cycling test (over 10,000 continuous GCD cycles). Our thorough experimentation delivers satisfactory results and has been explained in detail in the manuscript. Hereby, we propose that the EIS technique can be adopted for investigating materials' electrochemical stability, in addition to long CV and GCD cycles in the field of supercapacitors and battery research.","lang":"eng"}],"scopus_import":"1","date_created":"2024-04-14T22:01:01Z","_id":"15314","citation":{"ama":"Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material’s stability. <i>Journal of Energy Storage</i>. 2024;88. doi:<a href=\"https://doi.org/10.1016/j.est.2024.111464\">10.1016/j.est.2024.111464</a>","chicago":"Mahato, Neelima, Saurabh Singh, T. V.M. Sreekanth, Kisoo Yoo, and Jonghoon Kim. “Polycrystalline Phases Engineered In-Situ in Polyaniline-Graphene Composite Evoluting an Exceptional Stability and High Charge Storage Capacity: An EIS Investigative Approach to Evaluate Material’s Stability.” <i>Journal of Energy Storage</i>. Elsevier, 2024. <a href=\"https://doi.org/10.1016/j.est.2024.111464\">https://doi.org/10.1016/j.est.2024.111464</a>.","ieee":"N. Mahato, S. Singh, T. V. M. Sreekanth, K. Yoo, and J. Kim, “Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material’s stability,” <i>Journal of Energy Storage</i>, vol. 88. Elsevier, 2024.","apa":"Mahato, N., Singh, S., Sreekanth, T. V. M., Yoo, K., &#38; Kim, J. (2024). Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material’s stability. <i>Journal of Energy Storage</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.est.2024.111464\">https://doi.org/10.1016/j.est.2024.111464</a>","ista":"Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. 2024. Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material’s stability. Journal of Energy Storage. 88, 111464.","mla":"Mahato, Neelima, et al. “Polycrystalline Phases Engineered In-Situ in Polyaniline-Graphene Composite Evoluting an Exceptional Stability and High Charge Storage Capacity: An EIS Investigative Approach to Evaluate Material’s Stability.” <i>Journal of Energy Storage</i>, vol. 88, 111464, Elsevier, 2024, doi:<a href=\"https://doi.org/10.1016/j.est.2024.111464\">10.1016/j.est.2024.111464</a>.","short":"N. Mahato, S. Singh, T.V.M. Sreekanth, K. Yoo, J. Kim, Journal of Energy Storage 88 (2024)."},"title":"Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional stability and high charge storage capacity: An EIS investigative approach to evaluate material's stability","volume":88,"article_processing_charge":"No","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","language":[{"iso":"eng"}],"date_published":"2024-05-30T00:00:00Z","department":[{"_id":"MaIb"}],"day":"30","date_updated":"2025-09-04T13:38:27Z","publication_identifier":{"eissn":["2352-152X"]},"year":"2024","type":"journal_article"},{"project":[{"grant_number":"ALTF 343-2022","name":"A mechano-chemical theory for stem cell fate decisions in organoid development","_id":"34e2a5b5-11ca-11ed-8bc3-b2265616ef0b"}],"volume":87,"title":"Learning dynamical models of single and collective cell migration: a review","citation":{"ista":"Brückner D, Broedersz CP. 2024. Learning dynamical models of single and collective cell migration: a review. Reports on Progress in Physics. 87(5), 056601.","mla":"Brückner, David, and Chase P. Broedersz. “Learning Dynamical Models of Single and Collective Cell Migration: A Review.” <i>Reports on Progress in Physics</i>, vol. 87, no. 5, 056601, IOP Publishing, 2024, doi:<a href=\"https://doi.org/10.1088/1361-6633/ad36d2\">10.1088/1361-6633/ad36d2</a>.","short":"D. Brückner, C.P. Broedersz, Reports on Progress in Physics 87 (2024).","ama":"Brückner D, Broedersz CP. Learning dynamical models of single and collective cell migration: a review. <i>Reports on Progress in Physics</i>. 2024;87(5). doi:<a href=\"https://doi.org/10.1088/1361-6633/ad36d2\">10.1088/1361-6633/ad36d2</a>","chicago":"Brückner, David, and Chase P. Broedersz. “Learning Dynamical Models of Single and Collective Cell Migration: A Review.” <i>Reports on Progress in Physics</i>. IOP Publishing, 2024. <a href=\"https://doi.org/10.1088/1361-6633/ad36d2\">https://doi.org/10.1088/1361-6633/ad36d2</a>.","ieee":"D. Brückner and C. P. Broedersz, “Learning dynamical models of single and collective cell migration: a review,” <i>Reports on Progress in Physics</i>, vol. 87, no. 5. IOP Publishing, 2024.","apa":"Brückner, D., &#38; Broedersz, C. P. (2024). Learning dynamical models of single and collective cell migration: a review. <i>Reports on Progress in Physics</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1361-6633/ad36d2\">https://doi.org/10.1088/1361-6633/ad36d2</a>"},"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_processing_charge":"Yes (in subscription journal)","department":[{"_id":"EdHa"}],"has_accepted_license":"1","language":[{"iso":"eng"}],"date_published":"2024-04-04T00:00:00Z","publication_identifier":{"issn":["0034-4885"],"eissn":["1361-6633"]},"type":"journal_article","year":"2024","file_date_updated":"2024-08-20T11:00:03Z","day":"04","date_updated":"2025-09-04T13:39:07Z","quality_controlled":"1","ddc":["530"],"corr_author":"1","isi":1,"month":"04","publication":"Reports on Progress in Physics","status":"public","oa":1,"acknowledgement":"This work was supported by the Deutsche Forschungsgemeinschaft (German Research Foundation)—Project-ID 201269156—SFB 1032 (Project B12). D B B was supported by an NOMIS Fellowship and an EMBO Fellowship (ALTF 343-2022). We thank Joachim Rädler, Alexandra Fink, Erwin Frey, Pierre Ronceray, Ricard Alert, Edouard Hannezo, Henrik Flyvbjerg, Ulrich Schwarz, Joshua Shaevitz, Greg Stephens, Andrea Cavagna, Grzegorz Gradziuk, Fridtjof Brauns, Nikolas Claussen, Tom Brandstätter, Johannes Flommersfeld, Christoph Schreiber, Nicolas Arlt, Matthew Schmitt, Joris Messelink, Federico Gnesotto, Federica Mura, Bram Hoogland, Manon Wigbers, Isabella Graf, Jessica Lober, and many others for inspiring discussions. We also thank Claudia Flandoli for the artwork in figures 1, 5, 8 and 9.","abstract":[{"lang":"eng","text":"Single and collective cell migration are fundamental processes critical for physiological phenomena ranging from embryonic development and immune response to wound healing and cancer metastasis. To understand cell migration from a physical perspective, a broad variety of models for the underlying physical mechanisms that govern cell motility have been developed. A key challenge in the development of such models is how to connect them to experimental observations, which often exhibit complex stochastic behaviours. In this review, we discuss recent advances in data-driven theoretical approaches that directly connect with experimental data to infer dynamical models of stochastic cell migration. Leveraging advances in nanofabrication, image analysis, and tracking technology, experimental studies now provide unprecedented large datasets on cellular dynamics. In parallel, theoretical efforts have been directed towards integrating such datasets into physical models from the single cell to the tissue scale with the aim of conceptualising the emergent behaviour of cells. We first review how this inference problem has been addressed in both freely migrating and confined cells. Next, we discuss why these dynamics typically take the form of underdamped stochastic equations of motion, and how such equations can be inferred from data. We then review applications of data-driven inference and machine learning approaches to heterogeneity in cell behaviour, subcellular degrees of freedom, and to the collective dynamics of multicellular systems. Across these applications, we emphasise how data-driven methods can be integrated with physical active matter models of migrating cells, and help reveal how underlying molecular mechanisms control cell behaviour. Together, these data-driven approaches are a promising avenue for building physical models of cell migration directly from experimental data, and for providing conceptual links between different length-scales of description."}],"article_type":"review","publisher":"IOP Publishing","_id":"15315","tmp":{"short":"CC BY (3.0)","name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode"},"date_created":"2024-04-14T22:01:01Z","scopus_import":"1","pmid":1,"external_id":{"isi":["001196692400001"],"pmid":["38518358"],"arxiv":["2309.00545"]},"oa_version":"Published Version","doi":"10.1088/1361-6633/ad36d2","author":[{"first_name":"David","id":"e1e86031-6537-11eb-953a-f7ab92be508d","orcid":"0000-0001-7205-2975","last_name":"Brückner","full_name":"Brückner, David"},{"full_name":"Broedersz, Chase P.","last_name":"Broedersz","first_name":"Chase P."}],"file":[{"file_name":"2024_ReportPhysics_Brueckner.pdf","creator":"dernst","success":1,"date_created":"2024-08-20T11:00:03Z","date_updated":"2024-08-20T11:00:03Z","checksum":"c5910078230ade20f4dd83592e862a72","access_level":"open_access","relation":"main_file","file_size":4376898,"file_id":"17451","content_type":"application/pdf"}],"intvolume":"        87","issue":"5","publication_status":"published","article_number":"056601","arxiv":1},{"pmid":1,"related_material":{"link":[{"description":"News on ISTA website","url":"https://ista.ac.at/en/news/nerve-cells-old-at-heart/","relation":"press_release"}]},"external_id":{"pmid":["38574132"],"isi":["001253335100031"]},"oa_version":"Submitted Version","doi":"10.1126/science.adf3481","author":[{"first_name":"Sara","full_name":"Zocher, Sara","last_name":"Zocher"},{"first_name":"Asako","last_name":"Mccloskey","full_name":"Mccloskey, Asako"},{"full_name":"Karasinsky, Anne","last_name":"Karasinsky","first_name":"Anne"},{"full_name":"Schulte, Roberta","last_name":"Schulte","first_name":"Roberta"},{"first_name":"Ulrike","last_name":"Friedrich","full_name":"Friedrich, Ulrike"},{"first_name":"Mathias","last_name":"Lesche","full_name":"Lesche, Mathias"},{"first_name":"Nicole","last_name":"Rund","full_name":"Rund, Nicole"},{"full_name":"Gage, Fred H.","last_name":"Gage","first_name":"Fred H."},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W","full_name":"Hetzer, Martin W","last_name":"Hetzer","orcid":"0000-0002-2111-992X"},{"full_name":"Toda, Tomohisa","last_name":"Toda","first_name":"Tomohisa"}],"intvolume":"       384","publication_status":"published","issue":"6691","volume":384,"citation":{"short":"S. Zocher, A. Mccloskey, A. Karasinsky, R. Schulte, U. Friedrich, M. Lesche, N. Rund, F.H. Gage, M. Hetzer, T. Toda, Science 384 (2024) 53–59.","mla":"Zocher, Sara, et al. “Lifelong Persistence of Nuclear RNAs in the Mouse Brain.” <i>Science</i>, vol. 384, no. 6691, AAAS, 2024, pp. 53–59, doi:<a href=\"https://doi.org/10.1126/science.adf3481\">10.1126/science.adf3481</a>.","ista":"Zocher S, Mccloskey A, Karasinsky A, Schulte R, Friedrich U, Lesche M, Rund N, Gage FH, Hetzer M, Toda T. 2024. Lifelong persistence of nuclear RNAs in the mouse brain. Science. 384(6691), 53–59.","ama":"Zocher S, Mccloskey A, Karasinsky A, et al. Lifelong persistence of nuclear RNAs in the mouse brain. <i>Science</i>. 2024;384(6691):53-59. doi:<a href=\"https://doi.org/10.1126/science.adf3481\">10.1126/science.adf3481</a>","ieee":"S. Zocher <i>et al.</i>, “Lifelong persistence of nuclear RNAs in the mouse brain,” <i>Science</i>, vol. 384, no. 6691. AAAS, pp. 53–59, 2024.","apa":"Zocher, S., Mccloskey, A., Karasinsky, A., Schulte, R., Friedrich, U., Lesche, M., … Toda, T. (2024). Lifelong persistence of nuclear RNAs in the mouse brain. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.adf3481\">https://doi.org/10.1126/science.adf3481</a>","chicago":"Zocher, Sara, Asako Mccloskey, Anne Karasinsky, Roberta Schulte, Ulrike Friedrich, Mathias Lesche, Nicole Rund, Fred H. Gage, Martin Hetzer, and Tomohisa Toda. “Lifelong Persistence of Nuclear RNAs in the Mouse Brain.” <i>Science</i>. AAAS, 2024. <a href=\"https://doi.org/10.1126/science.adf3481\">https://doi.org/10.1126/science.adf3481</a>."},"title":"Lifelong persistence of nuclear RNAs in the mouse brain","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","OA_type":"green","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7615865","open_access":"1"}],"article_processing_charge":"No","department":[{"_id":"MaHe"}],"language":[{"iso":"eng"}],"date_published":"2024-04-04T00:00:00Z","publication_identifier":{"issn":["0036-8075"],"eissn":["1095-9203"]},"type":"journal_article","year":"2024","day":"04","date_updated":"2025-09-04T13:39:58Z","quality_controlled":"1","isi":1,"corr_author":"1","status":"public","oa":1,"month":"04","publication":"Science","article_type":"original","acknowledgement":"European Research Council: ERC-2018-STG, 804468 EAGER; European Research Council: ERC-2023-COG, 101125034 NEUTIME; Deutsche Forschungsgemeinschaft: TO1347/4-1; Boehringer Ingelheim Stiftung; Deutsches Zentrum für Neurodegenerative Erkrankungen","abstract":[{"lang":"eng","text":"Genomic DNA that resides in the nuclei of mammalian neurons can be as old as the organism itself. The life span of nuclear RNAs, which are critical for proper chromatin architecture and transcription regulation, has not been determined in adult tissues. In this work, we identified and characterized nuclear RNAs that do not turn over for at least 2 years in a subset of postnatally born cells in the mouse brain. These long-lived RNAs were stably retained in nuclei in a neural cell type–specific manner and were required for the maintenance of heterochromatin. Thus, the life span of neural cells may depend on both the molecular longevity of DNA for the storage of genetic information and also the extreme stability of RNA for the functional organization of chromatin."}],"publisher":"AAAS","scopus_import":"1","page":"53-59","date_created":"2024-04-14T22:01:01Z","_id":"15316","OA_place":"repository"},{"type":"journal_article","year":"2024","publication_identifier":{"issn":["1050-5164"]},"day":"01","date_updated":"2025-09-04T13:36:00Z","department":[{"_id":"JaMa"}],"language":[{"iso":"eng"}],"date_published":"2024-04-01T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2112.14196"}],"volume":34,"project":[{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems"},{"_id":"256E75B8-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"716117","name":"Optimal Transport and Stochastic Dynamics"},{"grant_number":"M03211","name":"Reaching consensus in heterogeneous random opinion dynamics","_id":"3490b268-11ca-11ed-8bc3-e0ad03f48839"},{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"},{"name":"Configuration Spaces over Non-Smooth Spaces","grant_number":"E208","_id":"34dbf174-11ca-11ed-8bc3-afe9d43d4b9c"},{"call_identifier":"FWF","_id":"260788DE-B435-11E9-9278-68D0E5697425","name":"Dissipation and dispersion in nonlinear partial differential equations","grant_number":"W1245"}],"citation":{"apa":"Dello Schiavo, L., Portinale, L., &#38; Sau, F. (2024). Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains. <i>Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/23-AAP2007\">https://doi.org/10.1214/23-AAP2007</a>","ieee":"L. Dello Schiavo, L. Portinale, and F. Sau, “Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains,” <i>Annals of Applied Probability</i>, vol. 34, no. 2. Institute of Mathematical Statistics, pp. 1789–1845, 2024.","ama":"Dello Schiavo L, Portinale L, Sau F. Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains. <i>Annals of Applied Probability</i>. 2024;34(2):1789-1845. doi:<a href=\"https://doi.org/10.1214/23-AAP2007\">10.1214/23-AAP2007</a>","chicago":"Dello Schiavo, Lorenzo, Lorenzo Portinale, and Federico Sau. “Scaling Limits of Random Walks, Harmonic Profiles, and Stationary Nonequilibrium States in Lipschitz Domains.” <i>Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2024. <a href=\"https://doi.org/10.1214/23-AAP2007\">https://doi.org/10.1214/23-AAP2007</a>.","mla":"Dello Schiavo, Lorenzo, et al. “Scaling Limits of Random Walks, Harmonic Profiles, and Stationary Nonequilibrium States in Lipschitz Domains.” <i>Annals of Applied Probability</i>, vol. 34, no. 2, Institute of Mathematical Statistics, 2024, pp. 1789–845, doi:<a href=\"https://doi.org/10.1214/23-AAP2007\">10.1214/23-AAP2007</a>.","ista":"Dello Schiavo L, Portinale L, Sau F. 2024. Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains. Annals of Applied Probability. 34(2), 1789–1845.","short":"L. Dello Schiavo, L. Portinale, F. Sau, Annals of Applied Probability 34 (2024) 1789–1845."},"title":"Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains","scopus_import":"1","page":"1789-1845","date_created":"2024-04-14T22:01:02Z","_id":"15317","abstract":[{"lang":"eng","text":"We consider the open symmetric exclusion (SEP) and inclusion (SIP) processes on a bounded Lipschitz domain Ω, with both fast and slow boundary. For the random walks on Ω dual to SEP/SIP we establish: a functional-CLT-type convergence to the Brownian motion on Ω with either Neumann (slow boundary), Dirichlet (fast boundary), or Robin (at criticality) boundary conditions; the discrete-to-continuum convergence of the corresponding harmonic profiles. As a consequence, we rigorously derive the hydrodynamic and hydrostatic limits for SEP/SIP on Ω, and analyze their stationary nonequilibrium fluctuations. All scaling limit results for SEP/SIP concern finite-dimensional distribution convergence only, as our duality techniques do not require to establish tightness for the fields associated to the particle systems."}],"acknowledgement":"The first author gratefully acknowledges funding by the Austrian Science Fund (FWF) grant F65, by the European Research Council (ERC, grant agreement No 716117, awarded to Prof. Dr. Jan Maas). He also gratefully acknowledges funding of his current position by the Austrian Science Fund (FWF) grant ESPRIT 208.\r\nThe second author gratefully acknowledges funding by the Hausdorff Center for Mathematics at the University of Bonn. Part of this work was completed while this author was a member of the Institute of Science and Technology Austria. He gratefully acknowledges funding of his position at that time by the Austrian Science Fund (FWF) grants F65 and W1245.\r\nThe third author gratefully acknowledges funding by the Lise Meitner fellowship, Austrian Science Fund (FWF): M3211. Part of this work was completed while funded by the European Union’s Horizon 2020 research and innovation programme under the Marie-Skłodowska-Curie grant agreement No. 754411.","article_type":"original","ec_funded":1,"publisher":"Institute of Mathematical Statistics","isi":1,"corr_author":"1","oa":1,"status":"public","publication":"Annals of Applied Probability","month":"04","quality_controlled":"1","doi":"10.1214/23-AAP2007","author":[{"full_name":"Dello Schiavo, Lorenzo","last_name":"Dello Schiavo","orcid":"0000-0002-9881-6870","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","first_name":"Lorenzo"},{"id":"30AD2CBC-F248-11E8-B48F-1D18A9856A87","first_name":"Lorenzo","full_name":"Portinale, Lorenzo","last_name":"Portinale"},{"full_name":"Sau, Federico","last_name":"Sau","id":"E1836206-9F16-11E9-8814-AEFDE5697425","first_name":"Federico"}],"oa_version":"Preprint","external_id":{"arxiv":["2112.14196"],"isi":["001198623200016"]},"arxiv":1,"publication_status":"published","issue":"2","intvolume":"        34"}]