[{"day":"01","project":[{"call_identifier":"H2020","_id":"268A44D6-B435-11E9-9278-68D0E5697425","grant_number":"805223","name":"Elastic Coordination for Scalable Machine Learning"}],"doi":"10.1109/TPDS.2020.3040606","department":[{"_id":"DaAl"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication_status":"published","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2005.00124"}],"oa":1,"issue":"7","intvolume":"        32","external_id":{"isi":["000621405200019"],"arxiv":["2005.00124"]},"scopus_import":"1","article_number":"9271898","abstract":[{"lang":"eng","text":"Deep learning at scale is dominated by communication time. Distributing samples across nodes usually yields the best performance, but poses scaling challenges due to global information dissemination and load imbalance across uneven sample lengths. State-of-the-art decentralized optimizers mitigate the problem, but require more iterations to achieve the same accuracy as their globally-communicating counterparts. We present Wait-Avoiding Group Model Averaging (WAGMA) SGD, a wait-avoiding stochastic optimizer that reduces global communication via subgroup weight exchange. The key insight is a combination of algorithmic changes to the averaging scheme and the use of a group allreduce operation. We prove the convergence of WAGMA-SGD, and empirically show that it retains convergence rates similar to Allreduce-SGD. For evaluation, we train ResNet-50 on ImageNet; Transformer for machine translation; and deep reinforcement learning for navigation at scale. Compared with state-of-the-art decentralized SGD variants, WAGMA-SGD significantly improves training throughput (e.g., 2.1× on 1,024 GPUs for reinforcement learning), and achieves the fastest time-to-solution (e.g., the highest score using the shortest training time for Transformer)."}],"volume":32,"date_created":"2020-11-05T15:25:43Z","article_type":"original","oa_version":"Preprint","month":"07","_id":"8723","date_updated":"2025-07-10T12:01:23Z","citation":{"ista":"Li S, Tal Ben-Nun TB-N, Nadiradze G, Girolamo SD, Dryden N, Alistarh D-A, Hoefler T. 2021. Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging. IEEE Transactions on Parallel and Distributed Systems. 32(7), 9271898.","short":"S. Li, T.B.-N. Tal Ben-Nun, G. Nadiradze, S.D. Girolamo, N. Dryden, D.-A. Alistarh, T. Hoefler, IEEE Transactions on Parallel and Distributed Systems 32 (2021).","apa":"Li, S., Tal Ben-Nun, T. B.-N., Nadiradze, G., Girolamo, S. D., Dryden, N., Alistarh, D.-A., &#38; Hoefler, T. (2021). Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging. <i>IEEE Transactions on Parallel and Distributed Systems</i>. IEEE. <a href=\"https://doi.org/10.1109/TPDS.2020.3040606\">https://doi.org/10.1109/TPDS.2020.3040606</a>","ieee":"S. Li <i>et al.</i>, “Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging,” <i>IEEE Transactions on Parallel and Distributed Systems</i>, vol. 32, no. 7. IEEE, 2021.","mla":"Li, Shigang, et al. “Breaking (Global) Barriers in Parallel Stochastic Optimization with Wait-Avoiding Group Averaging.” <i>IEEE Transactions on Parallel and Distributed Systems</i>, vol. 32, no. 7, 9271898, IEEE, 2021, doi:<a href=\"https://doi.org/10.1109/TPDS.2020.3040606\">10.1109/TPDS.2020.3040606</a>.","ama":"Li S, Tal Ben-Nun TB-N, Nadiradze G, et al. Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging. <i>IEEE Transactions on Parallel and Distributed Systems</i>. 2021;32(7). doi:<a href=\"https://doi.org/10.1109/TPDS.2020.3040606\">10.1109/TPDS.2020.3040606</a>","chicago":"Li, Shigang, Tal Ben-Nun Tal Ben-Nun, Giorgi Nadiradze, Salvatore Di Girolamo, Nikoli Dryden, Dan-Adrian Alistarh, and Torsten Hoefler. “Breaking (Global) Barriers in Parallel Stochastic Optimization with Wait-Avoiding Group Averaging.” <i>IEEE Transactions on Parallel and Distributed Systems</i>. IEEE, 2021. <a href=\"https://doi.org/10.1109/TPDS.2020.3040606\">https://doi.org/10.1109/TPDS.2020.3040606</a>."},"publisher":"IEEE","language":[{"iso":"eng"}],"year":"2021","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Hori-\r\nzon 2020 programme under Grant DAPP, Grant 678880; EPi-GRAM-HS, Grant 801039; and ERC Starting Grant ScaleML, Grant 805223. The work of Tal Ben-Nun is supported by the Swiss National Science Foundation (Ambizione Project No. 185778). The work of Nikoli Dryden is supported by the ETH Postdoctoral Fellowship. The authors would like to thank the Swiss National Supercomputing Center for providing the computing resources and technical support.","publication_identifier":{"issn":["1045-9219"]},"quality_controlled":"1","article_processing_charge":"No","publication":"IEEE Transactions on Parallel and Distributed Systems","type":"journal_article","date_published":"2021-07-01T00:00:00Z","title":"Breaking (global) barriers in parallel stochastic optimization with wait-avoiding group averaging","author":[{"last_name":"Li","first_name":"Shigang","full_name":"Li, Shigang"},{"last_name":"Tal Ben-Nun","first_name":"Tal Ben-Nun","full_name":"Tal Ben-Nun, Tal Ben-Nun"},{"orcid":"0000-0001-5634-0731","first_name":"Giorgi","id":"3279A00C-F248-11E8-B48F-1D18A9856A87","last_name":"Nadiradze","full_name":"Nadiradze, Giorgi"},{"full_name":"Girolamo, Salvatore Di","last_name":"Girolamo","first_name":"Salvatore Di"},{"first_name":"Nikoli","last_name":"Dryden","full_name":"Dryden, Nikoli"},{"full_name":"Alistarh, Dan-Adrian","first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","last_name":"Alistarh","orcid":"0000-0003-3650-940X"},{"last_name":"Hoefler","first_name":"Torsten","full_name":"Hoefler, Torsten"}],"isi":1,"arxiv":1,"ec_funded":1},{"year":"2021","publisher":"De Gruyter","language":[{"iso":"eng"}],"month":"01","page":"147-165","_id":"8742","citation":{"chicago":"Browning, Timothy D, and Roger Heath-Brown. “The Geometric Sieve for Quadrics.” <i>Forum Mathematicum</i>. De Gruyter, 2021. <a href=\"https://doi.org/10.1515/forum-2020-0074\">https://doi.org/10.1515/forum-2020-0074</a>.","short":"T.D. Browning, R. Heath-Brown, Forum Mathematicum 33 (2021) 147–165.","apa":"Browning, T. D., &#38; Heath-Brown, R. (2021). The geometric sieve for quadrics. <i>Forum Mathematicum</i>. De Gruyter. <a href=\"https://doi.org/10.1515/forum-2020-0074\">https://doi.org/10.1515/forum-2020-0074</a>","ista":"Browning TD, Heath-Brown R. 2021. The geometric sieve for quadrics. Forum Mathematicum. 33(1), 147–165.","mla":"Browning, Timothy D., and Roger Heath-Brown. “The Geometric Sieve for Quadrics.” <i>Forum Mathematicum</i>, vol. 33, no. 1, De Gruyter, 2021, pp. 147–65, doi:<a href=\"https://doi.org/10.1515/forum-2020-0074\">10.1515/forum-2020-0074</a>.","ama":"Browning TD, Heath-Brown R. The geometric sieve for quadrics. <i>Forum Mathematicum</i>. 2021;33(1):147-165. doi:<a href=\"https://doi.org/10.1515/forum-2020-0074\">10.1515/forum-2020-0074</a>","ieee":"T. D. Browning and R. Heath-Brown, “The geometric sieve for quadrics,” <i>Forum Mathematicum</i>, vol. 33, no. 1. De Gruyter, pp. 147–165, 2021."},"date_updated":"2025-04-15T07:39:01Z","date_published":"2021-01-01T00:00:00Z","type":"journal_article","isi":1,"arxiv":1,"title":"The geometric sieve for quadrics","author":[{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","first_name":"Timothy D","last_name":"Browning","full_name":"Browning, Timothy D","orcid":"0000-0002-8314-0177"},{"full_name":"Heath-Brown, Roger","first_name":"Roger","last_name":"Heath-Brown"}],"article_processing_charge":"No","publication_identifier":{"issn":["0933-7741"],"eissn":["1435-5337"]},"quality_controlled":"1","publication":"Forum Mathematicum","oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/2003.09593","open_access":"1"}],"issue":"1","doi":"10.1515/forum-2020-0074","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"TiBr"}],"project":[{"name":"New frontiers of the Manin conjecture","call_identifier":"FWF","grant_number":"P32428","_id":"26AEDAB2-B435-11E9-9278-68D0E5697425"}],"day":"01","publication_status":"published","status":"public","date_created":"2020-11-08T23:01:25Z","volume":33,"article_type":"original","abstract":[{"text":"We develop a version of Ekedahl’s geometric sieve for integral quadratic forms of rank at least five. As one ranges over the zeros of such quadratic forms, we use the sieve to compute the density of coprime values of polynomials, and furthermore, to address a question about local solubility in families of varieties parameterised by the zeros.","lang":"eng"}],"oa_version":"Preprint","intvolume":"        33","scopus_import":"1","external_id":{"isi":["000604750900008"],"arxiv":["2003.09593"]}},{"day":"01","doi":"10.1111/evo.14111","department":[{"_id":"NiBa"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","publication_status":"published","main_file_link":[{"open_access":"1","url":"http://hdl.handle.net/10261/223937"}],"oa":1,"issue":"2","intvolume":"        75","external_id":{"isi":["000583190600001"],"pmid":["33078844"]},"scopus_import":"1","related_material":{"link":[{"url":"https://doi.org/10.1111/evo.14225","relation":"erratum"}]},"abstract":[{"text":"Montane cloud forests are areas of high endemism, and are one of the more vulnerable terrestrial ecosystems to climate change. Thus, understanding how they both contribute to the generation of biodiversity, and will respond to ongoing climate change, are important and related challenges. The widely accepted model for montane cloud forest dynamics involves upslope forcing of their range limits with global climate warming. However, limited climate data provides some support for an alternative model, where range limits are forced downslope with climate warming. Testing between these two models is challenging, due to the inherent limitations of climate and pollen records. We overcome this with an alternative source of historical information, testing between competing model predictions using genomic data and demographic analyses for a species of beetle tightly associated to an oceanic island cloud forest. Results unequivocally support the alternative model: populations that were isolated at higher elevation peaks during the Last Glacial Maximum are now in contact and hybridizing at lower elevations. Our results suggest that genomic data are a rich source of information to further understand how montane cloud forest biodiversity originates, and how it is likely to be impacted by ongoing climate change.","lang":"eng"}],"volume":75,"date_created":"2020-11-08T23:01:26Z","article_type":"original","pmid":1,"oa_version":"Submitted Version","month":"02","_id":"8743","citation":{"chicago":"Salces-Castellano, Antonia, Sean Stankowski, Paula Arribas, Jairo Patino, Dirk N.  Karger, Roger Butlin, and Brent C. Emerson. “Long-Term Cloud Forest Response to Climate Warming Revealed by Insect Speciation History.” <i>Evolution</i>. Wiley, 2021. <a href=\"https://doi.org/10.1111/evo.14111\">https://doi.org/10.1111/evo.14111</a>.","apa":"Salces-Castellano, A., Stankowski, S., Arribas, P., Patino, J., Karger, D. N., Butlin, R., &#38; Emerson, B. C. (2021). Long-term cloud forest response to climate warming revealed by insect speciation history. <i>Evolution</i>. Wiley. <a href=\"https://doi.org/10.1111/evo.14111\">https://doi.org/10.1111/evo.14111</a>","short":"A. Salces-Castellano, S. Stankowski, P. Arribas, J. Patino, D.N. Karger, R. Butlin, B.C. Emerson, Evolution 75 (2021) 231–244.","ista":"Salces-Castellano A, Stankowski S, Arribas P, Patino J, Karger DN, Butlin R, Emerson BC. 2021. Long-term cloud forest response to climate warming revealed by insect speciation history. Evolution. 75(2), 231–244.","mla":"Salces-Castellano, Antonia, et al. “Long-Term Cloud Forest Response to Climate Warming Revealed by Insect Speciation History.” <i>Evolution</i>, vol. 75, no. 2, Wiley, 2021, pp. 231–44, doi:<a href=\"https://doi.org/10.1111/evo.14111\">10.1111/evo.14111</a>.","ama":"Salces-Castellano A, Stankowski S, Arribas P, et al. Long-term cloud forest response to climate warming revealed by insect speciation history. <i>Evolution</i>. 2021;75(2):231-244. doi:<a href=\"https://doi.org/10.1111/evo.14111\">10.1111/evo.14111</a>","ieee":"A. Salces-Castellano <i>et al.</i>, “Long-term cloud forest response to climate warming revealed by insect speciation history,” <i>Evolution</i>, vol. 75, no. 2. Wiley, pp. 231–244, 2021."},"page":"231-244","date_updated":"2023-08-04T11:09:49Z","publisher":"Wiley","language":[{"iso":"eng"}],"year":"2021","acknowledgement":"This work was financed by the Spanish Agencia Estatal de Investigación (CGL2017‐85718‐P), awarded to BCE, and co‐financed by FEDER. It was also supported by the Spanish Ministerio de Ciencia, Innovación y Universidades (EQC2018‐004418‐P), awarded to BCE. AS‐C was funded by the Spanish Ministerio de Ciencia, Innovación y Universidades through an FPU PhD fellowship (FPU014/02948). The authors thank Instituto Tecnológico y de Energías Renovables (ITER), S.A for providing access to the Teide High‐Performance Computing facility (Teide‐HPC). Fieldwork was supported by collecting permit AFF 107/17 (sigma number 2017‐00572) kindly provided by the Cabildo of Tenerife. The authors wish to thank the following for field work and sample sorting and identification: A. J. Pérez‐Delgado, H. López, and C. Andújar. We also thank V. García‐Olivares for assistance with laboratory and bioinformatic work.","publication_identifier":{"eissn":["1558-5646"],"issn":["0014-3820"]},"quality_controlled":"1","article_processing_charge":"No","publication":"Evolution","type":"journal_article","date_published":"2021-02-01T00:00:00Z","title":"Long-term cloud forest response to climate warming revealed by insect speciation history","author":[{"full_name":"Salces-Castellano, Antonia","last_name":"Salces-Castellano","first_name":"Antonia"},{"full_name":"Stankowski, Sean","first_name":"Sean","id":"43161670-5719-11EA-8025-FABC3DDC885E","last_name":"Stankowski"},{"full_name":"Arribas, Paula","last_name":"Arribas","first_name":"Paula"},{"full_name":"Patino, Jairo","first_name":"Jairo","last_name":"Patino"},{"last_name":"Karger","first_name":"Dirk N. ","full_name":"Karger, Dirk N. "},{"first_name":"Roger","last_name":"Butlin","full_name":"Butlin, Roger"},{"full_name":"Emerson, Brent C.","first_name":"Brent C.","last_name":"Emerson"}],"isi":1},{"day":"01","doi":"10.1038/s41583-020-00408-6","department":[{"_id":"TiVo"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication_status":"published","file_date_updated":"2021-02-04T10:34:22Z","oa":1,"issue":"1","intvolume":"        22","external_id":{"isi":["000588256300001"],"pmid":["33173190"]},"scopus_import":"1","abstract":[{"lang":"eng","text":"Traditional scientific conferences and seminar events have been hugely disrupted by the COVID-19 pandemic, paving the way for virtual forms of scientific communication to take hold and be put to the test."}],"date_created":"2020-11-15T23:01:18Z","volume":22,"article_type":"letter_note","pmid":1,"oa_version":"Published Version","file":[{"content_type":"application/pdf","relation":"main_file","access_level":"open_access","date_updated":"2021-02-04T10:34:22Z","success":1,"file_name":"2021_NatureNeuroScience_Bozelos.pdf","date_created":"2021-02-04T10:34:22Z","file_size":683634,"checksum":"7985d7dff94c086e35b94a911d78d9ad","file_id":"9088","creator":"dernst"}],"month":"01","date_updated":"2025-07-10T12:01:24Z","_id":"8757","citation":{"ieee":"P. Bozelos and T. P. Vogels, “Talking science, online,” <i>Nature Reviews Neuroscience</i>, vol. 22, no. 1. Springer Nature, pp. 1–2, 2021.","mla":"Bozelos, Panagiotis, and Tim P. Vogels. “Talking Science, Online.” <i>Nature Reviews Neuroscience</i>, vol. 22, no. 1, Springer Nature, 2021, pp. 1–2, doi:<a href=\"https://doi.org/10.1038/s41583-020-00408-6\">10.1038/s41583-020-00408-6</a>.","ama":"Bozelos P, Vogels TP. Talking science, online. <i>Nature Reviews Neuroscience</i>. 2021;22(1):1-2. doi:<a href=\"https://doi.org/10.1038/s41583-020-00408-6\">10.1038/s41583-020-00408-6</a>","ista":"Bozelos P, Vogels TP. 2021. Talking science, online. Nature Reviews Neuroscience. 22(1), 1–2.","apa":"Bozelos, P., &#38; Vogels, T. P. (2021). Talking science, online. <i>Nature Reviews Neuroscience</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41583-020-00408-6\">https://doi.org/10.1038/s41583-020-00408-6</a>","short":"P. Bozelos, T.P. Vogels, Nature Reviews Neuroscience 22 (2021) 1–2.","chicago":"Bozelos, Panagiotis, and Tim P Vogels. “Talking Science, Online.” <i>Nature Reviews Neuroscience</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1038/s41583-020-00408-6\">https://doi.org/10.1038/s41583-020-00408-6</a>."},"page":"1-2","publisher":"Springer Nature","language":[{"iso":"eng"}],"year":"2021","publication_identifier":{"issn":["1471-003X"],"eissn":["1471-0048"]},"quality_controlled":"1","article_processing_charge":"No","ddc":["570"],"publication":"Nature Reviews Neuroscience","has_accepted_license":"1","type":"journal_article","date_published":"2021-01-01T00:00:00Z","title":"Talking science, online","author":[{"full_name":"Bozelos, Panagiotis","first_name":"Panagiotis","id":"52e9c652-2982-11eb-81d4-b43d94c63700","last_name":"Bozelos"},{"orcid":"0000-0003-3295-6181","first_name":"Tim P","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","last_name":"Vogels","full_name":"Vogels, Tim P"}],"isi":1},{"isi":1,"arxiv":1,"ec_funded":1,"title":"Contravariant forms on Whittaker modules","author":[{"full_name":"Brown, Adam","last_name":"Brown","first_name":"Adam","id":"70B7FDF6-608D-11E9-9333-8535E6697425"},{"full_name":"Romanov, Anna","first_name":"Anna","last_name":"Romanov"}],"date_published":"2021-01-01T00:00:00Z","type":"journal_article","publication":"Proceedings of the American Mathematical Society","article_processing_charge":"No","publication_identifier":{"issn":["0002-9939"],"eissn":["1088-6826"]},"quality_controlled":"1","acknowledgement":"We would like to thank Peter Trapa for useful discussions, and Dragan Milicic and Arun Ram for valuable feedback on the structure of the paper. The first author acknowledges the support of the European Unions Horizon 2020 research and innovation programme under the Marie Skodowska-Curie Grant Agreement No. 754411. The second author is\r\nsupported by the National Science Foundation Award No. 1803059.","year":"2021","publisher":"American Mathematical Society","language":[{"iso":"eng"}],"month":"01","_id":"8773","page":"37-52","date_updated":"2025-04-14T07:43:50Z","citation":{"ieee":"A. Brown and A. Romanov, “Contravariant forms on Whittaker modules,” <i>Proceedings of the American Mathematical Society</i>, vol. 149, no. 1. American Mathematical Society, pp. 37–52, 2021.","mla":"Brown, Adam, and Anna Romanov. “Contravariant Forms on Whittaker Modules.” <i>Proceedings of the American Mathematical Society</i>, vol. 149, no. 1, American Mathematical Society, 2021, pp. 37–52, doi:<a href=\"https://doi.org/10.1090/proc/15205\">10.1090/proc/15205</a>.","ama":"Brown A, Romanov A. Contravariant forms on Whittaker modules. <i>Proceedings of the American Mathematical Society</i>. 2021;149(1):37-52. doi:<a href=\"https://doi.org/10.1090/proc/15205\">10.1090/proc/15205</a>","ista":"Brown A, Romanov A. 2021. Contravariant forms on Whittaker modules. Proceedings of the American Mathematical Society. 149(1), 37–52.","apa":"Brown, A., &#38; Romanov, A. (2021). Contravariant forms on Whittaker modules. <i>Proceedings of the American Mathematical Society</i>. American Mathematical Society. <a href=\"https://doi.org/10.1090/proc/15205\">https://doi.org/10.1090/proc/15205</a>","short":"A. Brown, A. Romanov, Proceedings of the American Mathematical Society 149 (2021) 37–52.","chicago":"Brown, Adam, and Anna Romanov. “Contravariant Forms on Whittaker Modules.” <i>Proceedings of the American Mathematical Society</i>. American Mathematical Society, 2021. <a href=\"https://doi.org/10.1090/proc/15205\">https://doi.org/10.1090/proc/15205</a>."},"oa_version":"Preprint","date_created":"2020-11-19T10:17:40Z","volume":149,"article_type":"original","abstract":[{"text":"Let g be a complex semisimple Lie algebra. We give a classification of contravariant forms on the nondegenerate Whittaker g-modules Y(χ,η) introduced by Kostant. We prove that the set of all contravariant forms on Y(χ,η) forms a vector space whose dimension is given by the cardinality of the Weyl group of g. We also describe a procedure for parabolically inducing contravariant forms. As a corollary, we deduce the existence of the Shapovalov form on a Verma module, and provide a formula for the dimension of the space of contravariant forms on the degenerate Whittaker modules M(χ,η) introduced by McDowell.","lang":"eng"}],"scopus_import":"1","external_id":{"arxiv":["1910.08286"],"isi":["000600416300004"]},"intvolume":"       149","issue":"1","keyword":["Applied Mathematics","General Mathematics"],"oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1910.08286"}],"publication_status":"published","status":"public","doi":"10.1090/proc/15205","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"HeEd"}],"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships"}],"day":"01"},{"status":"public","publication_status":"published","day":"15","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"JuFi"}],"doi":"10.1016/j.jde.2020.10.030","issue":"2","oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2004.02618"}],"external_id":{"isi":["000600845300023"],"arxiv":["2004.02618"]},"scopus_import":"1","intvolume":"       274","oa_version":"Preprint","abstract":[{"text":"This paper is concerned with a non-isothermal Cahn-Hilliard model based on a microforce balance. The model was derived by A. Miranville and G. Schimperna starting from the two fundamental laws of Thermodynamics, following M. Gurtin's two-scale approach. The main working assumptions are made on the behaviour of the heat flux as the absolute temperature tends to zero and to infinity. A suitable Ginzburg-Landau free energy is considered. Global-in-time existence for the initial-boundary value problem associated to the entropy formulation and, in a subcase, also to the weak formulation of the model is proved by deriving suitable a priori estimates and by showing weak sequential stability of families of approximating solutions. At last, some highlights are given regarding a possible approximation scheme compatible with the a-priori estimates available for the system.","lang":"eng"}],"article_type":"original","date_created":"2020-11-22T23:01:26Z","volume":274,"page":"924-970","_id":"8792","date_updated":"2025-07-10T12:01:25Z","citation":{"mla":"Marveggio, Alice, and Giulio Schimperna. “On a Non-Isothermal Cahn-Hilliard Model Based on a Microforce Balance.” <i>Journal of Differential Equations</i>, vol. 274, no. 2, Elsevier, 2021, pp. 924–70, doi:<a href=\"https://doi.org/10.1016/j.jde.2020.10.030\">10.1016/j.jde.2020.10.030</a>.","ama":"Marveggio A, Schimperna G. On a non-isothermal Cahn-Hilliard model based on a microforce balance. <i>Journal of Differential Equations</i>. 2021;274(2):924-970. doi:<a href=\"https://doi.org/10.1016/j.jde.2020.10.030\">10.1016/j.jde.2020.10.030</a>","ieee":"A. Marveggio and G. Schimperna, “On a non-isothermal Cahn-Hilliard model based on a microforce balance,” <i>Journal of Differential Equations</i>, vol. 274, no. 2. Elsevier, pp. 924–970, 2021.","short":"A. Marveggio, G. Schimperna, Journal of Differential Equations 274 (2021) 924–970.","apa":"Marveggio, A., &#38; Schimperna, G. (2021). On a non-isothermal Cahn-Hilliard model based on a microforce balance. <i>Journal of Differential Equations</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jde.2020.10.030\">https://doi.org/10.1016/j.jde.2020.10.030</a>","ista":"Marveggio A, Schimperna G. 2021. On a non-isothermal Cahn-Hilliard model based on a microforce balance. Journal of Differential Equations. 274(2), 924–970.","chicago":"Marveggio, Alice, and Giulio Schimperna. “On a Non-Isothermal Cahn-Hilliard Model Based on a Microforce Balance.” <i>Journal of Differential Equations</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.jde.2020.10.030\">https://doi.org/10.1016/j.jde.2020.10.030</a>."},"month":"02","language":[{"iso":"eng"}],"publisher":"Elsevier","acknowledgement":"G. Schimperna has been partially supported by GNAMPA (Gruppo Nazionale per l'Analisi Matematica, la Probabilità e le loro Applicazioni) of INdAM (Istituto Nazionale di Alta Matematica).","year":"2021","publication":"Journal of Differential Equations","quality_controlled":"1","publication_identifier":{"issn":["0022-0396"],"eissn":["1090-2732"]},"article_processing_charge":"No","author":[{"first_name":"Alice","id":"25647992-AA84-11E9-9D75-8427E6697425","last_name":"Marveggio","full_name":"Marveggio, Alice"},{"last_name":"Schimperna","first_name":"Giulio","full_name":"Schimperna, Giulio"}],"title":"On a non-isothermal Cahn-Hilliard model based on a microforce balance","arxiv":1,"isi":1,"type":"journal_article","date_published":"2021-02-15T00:00:00Z"},{"language":[{"iso":"eng"}],"publisher":"Springer Nature","date_updated":"2025-07-10T12:01:25Z","_id":"8816","citation":{"chicago":"Runkel, Ingo, and Lorant Szegedy. “Area-Dependent Quantum Field Theory.” <i>Communications in Mathematical Physics</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s00220-020-03902-1\">https://doi.org/10.1007/s00220-020-03902-1</a>.","ieee":"I. Runkel and L. Szegedy, “Area-dependent quantum field theory,” <i>Communications in Mathematical Physics</i>, vol. 381, no. 1. Springer Nature, pp. 83–117, 2021.","mla":"Runkel, Ingo, and Lorant Szegedy. “Area-Dependent Quantum Field Theory.” <i>Communications in Mathematical Physics</i>, vol. 381, no. 1, Springer Nature, 2021, pp. 83–117, doi:<a href=\"https://doi.org/10.1007/s00220-020-03902-1\">10.1007/s00220-020-03902-1</a>.","ama":"Runkel I, Szegedy L. Area-dependent quantum field theory. <i>Communications in Mathematical Physics</i>. 2021;381(1):83–117. doi:<a href=\"https://doi.org/10.1007/s00220-020-03902-1\">10.1007/s00220-020-03902-1</a>","ista":"Runkel I, Szegedy L. 2021. Area-dependent quantum field theory. Communications in Mathematical Physics. 381(1), 83–117.","apa":"Runkel, I., &#38; Szegedy, L. (2021). Area-dependent quantum field theory. <i>Communications in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00220-020-03902-1\">https://doi.org/10.1007/s00220-020-03902-1</a>","short":"I. Runkel, L. Szegedy, Communications in Mathematical Physics 381 (2021) 83–117."},"page":"83–117","month":"01","file":[{"file_name":"2021_CommMathPhys_Runkel.pdf","checksum":"6f451f9c2b74bedbc30cf884a3e02670","file_size":790526,"date_created":"2021-02-03T15:00:30Z","file_id":"9081","creator":"dernst","content_type":"application/pdf","relation":"main_file","date_updated":"2021-02-03T15:00:30Z","access_level":"open_access","success":1}],"acknowledgement":"The authors thank Yuki Arano, Nils Carqueville, Alexei Davydov, Reiner Lauterbach, Pau Enrique Moliner, Chris Heunen, André Henriques, Ehud Meir, Catherine Meusburger, Gregor Schaumann, Richard Szabo and Stefan Wagner for helpful discussions and comments. We also thank the referees for their detailed comments which significantly improved the exposition of this paper. LS is supported by the DFG Research Training Group 1670 “Mathematics Inspired by String Theory and Quantum Field Theory”. Open access funding provided by Institute of Science and Technology (IST Austria).","year":"2021","publication":"Communications in Mathematical Physics","ddc":["510"],"article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"isi":1,"author":[{"last_name":"Runkel","first_name":"Ingo","full_name":"Runkel, Ingo"},{"full_name":"Szegedy, Lorant","id":"7943226E-220E-11EA-94C7-D59F3DDC885E","first_name":"Lorant","last_name":"Szegedy","orcid":"0000-0003-2834-5054"}],"title":"Area-dependent quantum field theory","date_published":"2021-01-01T00:00:00Z","has_accepted_license":"1","type":"journal_article","publication_status":"published","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"MiLe"}],"doi":"10.1007/s00220-020-03902-1","day":"01","project":[{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"issue":"1","oa":1,"file_date_updated":"2021-02-03T15:00:30Z","scopus_import":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"isi":["000591139000001"]},"intvolume":"       381","oa_version":"Published Version","article_type":"original","date_created":"2020-11-29T23:01:17Z","volume":381,"abstract":[{"text":"Area-dependent quantum field theory is a modification of two-dimensional topological quantum field theory, where one equips each connected component of a bordism with a positive real number—interpreted as area—which behaves additively under glueing. As opposed to topological theories, in area-dependent theories the state spaces can be infinite-dimensional. We introduce the notion of regularised Frobenius algebras in Hilbert spaces and show that area-dependent theories are in one-to-one correspondence to commutative regularised Frobenius algebras. We also provide a state sum construction for area-dependent theories. Our main example is two-dimensional Yang–Mills theory with compact gauge group, which we treat in detail.","lang":"eng"}]},{"issue":"2","day":"01","project":[{"name":"Discrete Optimization in Computer Vision: Theory and Practice","call_identifier":"FP7","_id":"25FBA906-B435-11E9-9278-68D0E5697425","grant_number":"616160"}],"department":[{"_id":"VlKo"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1007/s00186-020-00730-w","status":"public","publication_status":"published","abstract":[{"lang":"eng","text":"The paper introduces an inertial extragradient subgradient method with self-adaptive step sizes for solving equilibrium problems in real Hilbert spaces. Weak convergence of the proposed method is obtained under the condition that the bifunction is pseudomonotone and Lipchitz continuous. Linear convergence is also given when the bifunction is strongly pseudomonotone and Lipchitz continuous. Numerical implementations and comparisons with other related inertial methods are given using test problems including a real-world application to Nash–Cournot oligopolistic electricity market equilibrium model."}],"article_type":"original","date_created":"2020-11-29T23:01:18Z","volume":93,"oa_version":"None","intvolume":"        93","external_id":{"isi":["000590497300001"]},"scopus_import":"1","year":"2021","acknowledgement":"The authors are grateful to the two referees and the Associate Editor for their comments and suggestions which have improved the earlier version of the paper greatly. The project of Yekini Shehu has received funding from the European Research Council (ERC) under the European Union’s Seventh Framework Program (FP7 - 2007-2013) (Grant agreement No. 616160).","_id":"8817","citation":{"chicago":"Shehu, Yekini, Olaniyi S. Iyiola, Duong Viet Thong, and Nguyen Thi Cam Van. “An Inertial Subgradient Extragradient Algorithm Extended to Pseudomonotone Equilibrium Problems.” <i>Mathematical Methods of Operations Research</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s00186-020-00730-w\">https://doi.org/10.1007/s00186-020-00730-w</a>.","ama":"Shehu Y, Iyiola OS, Thong DV, Van NTC. An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems. <i>Mathematical Methods of Operations Research</i>. 2021;93(2):213-242. doi:<a href=\"https://doi.org/10.1007/s00186-020-00730-w\">10.1007/s00186-020-00730-w</a>","mla":"Shehu, Yekini, et al. “An Inertial Subgradient Extragradient Algorithm Extended to Pseudomonotone Equilibrium Problems.” <i>Mathematical Methods of Operations Research</i>, vol. 93, no. 2, Springer Nature, 2021, pp. 213–42, doi:<a href=\"https://doi.org/10.1007/s00186-020-00730-w\">10.1007/s00186-020-00730-w</a>.","ieee":"Y. Shehu, O. S. Iyiola, D. V. Thong, and N. T. C. Van, “An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems,” <i>Mathematical Methods of Operations Research</i>, vol. 93, no. 2. Springer Nature, pp. 213–242, 2021.","apa":"Shehu, Y., Iyiola, O. S., Thong, D. V., &#38; Van, N. T. C. (2021). An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems. <i>Mathematical Methods of Operations Research</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00186-020-00730-w\">https://doi.org/10.1007/s00186-020-00730-w</a>","short":"Y. Shehu, O.S. Iyiola, D.V. Thong, N.T.C. Van, Mathematical Methods of Operations Research 93 (2021) 213–242.","ista":"Shehu Y, Iyiola OS, Thong DV, Van NTC. 2021. An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems. Mathematical Methods of Operations Research. 93(2), 213–242."},"date_updated":"2024-11-04T13:52:33Z","page":"213-242","month":"04","language":[{"iso":"eng"}],"publisher":"Springer Nature","type":"journal_article","date_published":"2021-04-01T00:00:00Z","author":[{"first_name":"Yekini","id":"3FC7CB58-F248-11E8-B48F-1D18A9856A87","last_name":"Shehu","full_name":"Shehu, Yekini","orcid":"0000-0001-9224-7139"},{"first_name":"Olaniyi S.","last_name":"Iyiola","full_name":"Iyiola, Olaniyi S."},{"full_name":"Thong, Duong Viet","last_name":"Thong","first_name":"Duong Viet"},{"full_name":"Van, Nguyen Thi Cam","last_name":"Van","first_name":"Nguyen Thi Cam"}],"title":"An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems","ec_funded":1,"isi":1,"quality_controlled":"1","publication_identifier":{"eissn":["1432-5217"],"issn":["1432-2994"]},"article_processing_charge":"No","publication":"Mathematical Methods of Operations Research"},{"related_material":{"link":[{"url":"https://doi.org/10.1038/s41586-020-03068-9","relation":"erratum"}]},"abstract":[{"text":"The hippocampus has a major role in encoding and consolidating long-term memories, and undergoes plastic changes during sleep1. These changes require precise homeostatic control by subcortical neuromodulatory structures2. The underlying mechanisms of this phenomenon, however, remain unknown. Here, using multi-structure recordings in macaque monkeys, we show that the brainstem transiently modulates hippocampal network events through phasic pontine waves known as pontogeniculooccipital waves (PGO waves). Two physiologically distinct types of PGO wave appear to occur sequentially, selectively influencing high-frequency ripples and low-frequency theta events, respectively. The two types of PGO wave are associated with opposite hippocampal spike-field coupling, prompting periods of high neural synchrony of neural populations during periods of ripple and theta instances. The coupling between PGO waves and ripples, classically associated with distinct sleep stages, supports the notion that a global coordination mechanism of hippocampal sleep dynamics by cholinergic pontine transients may promote systems and synaptic memory consolidation as well as synaptic homeostasis.","lang":"eng"}],"date_created":"2020-11-29T23:01:19Z","volume":589,"article_type":"original","pmid":1,"oa_version":"None","intvolume":"       589","external_id":{"pmid":["33208951"],"isi":["000591047800005"]},"scopus_import":"1","issue":"7840","day":"07","doi":"10.1038/s41586-020-2914-4","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"JoCs"}],"status":"public","publication_status":"published","type":"journal_article","date_published":"2021-01-07T00:00:00Z","title":"Coupling of hippocampal theta and ripples with pontogeniculooccipital waves","author":[{"full_name":"Ramirez Villegas, Juan F","id":"44B06F76-F248-11E8-B48F-1D18A9856A87","first_name":"Juan F","last_name":"Ramirez Villegas"},{"first_name":"Michel","last_name":"Besserve","full_name":"Besserve, Michel"},{"first_name":"Yusuke","last_name":"Murayama","full_name":"Murayama, Yusuke"},{"first_name":"Henry C.","last_name":"Evrard","full_name":"Evrard, Henry C."},{"full_name":"Oeltermann, Axel","first_name":"Axel","last_name":"Oeltermann"},{"first_name":"Nikos K.","last_name":"Logothetis","full_name":"Logothetis, Nikos K."}],"isi":1,"publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"quality_controlled":"1","article_processing_charge":"No","publication":"Nature","year":"2021","acknowledgement":"We thank O. Eschenko and M. Constantinou for providing feedback on earlier versions of this work, and J. Werner and M. Schnabel for technical support during the development of this study. This research was supported by the Max Planck Society.","month":"01","date_updated":"2025-07-10T12:01:26Z","_id":"8818","citation":{"chicago":"Ramirez Villegas, Juan F, Michel Besserve, Yusuke Murayama, Henry C. Evrard, Axel Oeltermann, and Nikos K. Logothetis. “Coupling of Hippocampal Theta and Ripples with Pontogeniculooccipital Waves.” <i>Nature</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1038/s41586-020-2914-4\">https://doi.org/10.1038/s41586-020-2914-4</a>.","mla":"Ramirez Villegas, Juan F., et al. “Coupling of Hippocampal Theta and Ripples with Pontogeniculooccipital Waves.” <i>Nature</i>, vol. 589, no. 7840, Springer Nature, 2021, pp. 96–102, doi:<a href=\"https://doi.org/10.1038/s41586-020-2914-4\">10.1038/s41586-020-2914-4</a>.","ama":"Ramirez Villegas JF, Besserve M, Murayama Y, Evrard HC, Oeltermann A, Logothetis NK. Coupling of hippocampal theta and ripples with pontogeniculooccipital waves. <i>Nature</i>. 2021;589(7840):96-102. doi:<a href=\"https://doi.org/10.1038/s41586-020-2914-4\">10.1038/s41586-020-2914-4</a>","ieee":"J. F. Ramirez Villegas, M. Besserve, Y. Murayama, H. C. Evrard, A. Oeltermann, and N. K. Logothetis, “Coupling of hippocampal theta and ripples with pontogeniculooccipital waves,” <i>Nature</i>, vol. 589, no. 7840. Springer Nature, pp. 96–102, 2021.","apa":"Ramirez Villegas, J. F., Besserve, M., Murayama, Y., Evrard, H. C., Oeltermann, A., &#38; Logothetis, N. K. (2021). Coupling of hippocampal theta and ripples with pontogeniculooccipital waves. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-020-2914-4\">https://doi.org/10.1038/s41586-020-2914-4</a>","short":"J.F. Ramirez Villegas, M. Besserve, Y. Murayama, H.C. Evrard, A. Oeltermann, N.K. Logothetis, Nature 589 (2021) 96–102.","ista":"Ramirez Villegas JF, Besserve M, Murayama Y, Evrard HC, Oeltermann A, Logothetis NK. 2021. Coupling of hippocampal theta and ripples with pontogeniculooccipital waves. Nature. 589(7840), 96–102."},"page":"96-102","publisher":"Springer Nature","language":[{"iso":"eng"}]},{"abstract":[{"text":"Plants are able to orient their growth according to gravity, which ultimately controls both shoot and root architecture.1 Gravitropism is a dynamic process whereby gravistimulation induces the asymmetric distribution of the plant hormone auxin, leading to asymmetric growth, organ bending, and subsequent reset of auxin distribution back to the original pre-gravistimulation situation.1,  2,  3 Differential auxin accumulation during the gravitropic response depends on the activity of polarly localized PIN-FORMED (PIN) auxin-efflux carriers.1,  2,  3,  4 In particular, the timing of this dynamic response is regulated by PIN2,5,6 but the underlying molecular mechanisms are poorly understood. Here, we show that MEMBRANE ASSOCIATED KINASE REGULATOR2 (MAKR2) controls the pace of the root gravitropic response. We found that MAKR2 is required for the PIN2 asymmetry during gravitropism by acting as a negative regulator of the cell-surface signaling mediated by the receptor-like kinase TRANSMEMBRANE KINASE1 (TMK1).2,7,  8,  9,  10 Furthermore, we show that the MAKR2 inhibitory effect on TMK1 signaling is antagonized by auxin itself, which triggers rapid MAKR2 membrane dissociation in a TMK1-dependent manner. Our findings suggest that the timing of the root gravitropic response is orchestrated by the reversible inhibition of the TMK1 signaling pathway at the cell surface.","lang":"eng"}],"volume":31,"date_created":"2020-12-01T13:39:46Z","article_type":"original","pmid":1,"oa_version":"Published Version","intvolume":"        31","external_id":{"isi":["000614361000039"],"pmid":["33157019"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","oa":1,"file_date_updated":"2021-02-04T11:37:50Z","issue":"1","day":"11","doi":"10.1016/j.cub.2020.10.011","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"JiFr"}],"status":"public","publication_status":"published","has_accepted_license":"1","type":"journal_article","date_published":"2021-01-11T00:00:00Z","title":"Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism","author":[{"full_name":"Marquès-Bueno, MM","first_name":"MM","last_name":"Marquès-Bueno"},{"last_name":"Armengot","first_name":"L","full_name":"Armengot, L"},{"full_name":"Noack, LC","first_name":"LC","last_name":"Noack"},{"full_name":"Bareille, J","first_name":"J","last_name":"Bareille"},{"last_name":"Rodriguez Solovey","id":"3922B506-F248-11E8-B48F-1D18A9856A87","first_name":"Lesia","full_name":"Rodriguez Solovey, Lesia","orcid":"0000-0002-7244-7237"},{"first_name":"MP","last_name":"Platre","full_name":"Platre, MP"},{"full_name":"Bayle, V","last_name":"Bayle","first_name":"V"},{"full_name":"Liu, M","last_name":"Liu","first_name":"M"},{"last_name":"Opdenacker","first_name":"D","full_name":"Opdenacker, D"},{"full_name":"Vanneste, S","last_name":"Vanneste","first_name":"S"},{"full_name":"Möller, BK","first_name":"BK","last_name":"Möller"},{"full_name":"Nimchuk, ZL","first_name":"ZL","last_name":"Nimchuk"},{"full_name":"Beeckman, T","first_name":"T","last_name":"Beeckman"},{"last_name":"Caño-Delgado","first_name":"AI","full_name":"Caño-Delgado, AI"},{"last_name":"Friml","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596"},{"last_name":"Jaillais","first_name":"Y","full_name":"Jaillais, Y"}],"isi":1,"publication_identifier":{"issn":["0960-9822"],"eissn":["1879-0445"]},"quality_controlled":"1","article_processing_charge":"Yes (via OA deal)","ddc":["570"],"publication":"Current Biology","year":"2021","acknowledgement":"We thank the SiCE group for discussions and comments; S. Yalovsky, B. Scheres, and the NASC/ABRC collection for providing transgenic Arabidopsis lines and plasmids; L. Kalmbach and M. Barberon for the gift of pLOK180_pFR7m34GW; A. Lacroix, J. Berger, and P. Bolland for plant care; and M. Fendrych for help with microfluidics in the J.F. lab. We acknowledge\r\nthe contribution of the SFR Biosciences (UMS3444/CNRS, US8/Inser m, ENS de Lyon, UCBL) facilities: C. Lionet, E. Chatre, and J. Brocard at LBIPLATIM-MICROSCOPY for assistance with imaging, and V. GuegenChaignon and A. Page at the Protein Science Facility (PSF) for assistance with protein purification and mass spectrometry. Y.J. was funded by ERC\r\ngrant 3363360-APPL under FP/2007–2013. Y.J. and Z.L.N. were funded by an ANR- and NSF-supported ERA-CAPS project (SICOPID: ANR-17-CAPS0003-01/NSF PGRP IOS-1841917). A.I.C.-D. is funded by an ERC consolidator grant (ERC-2015-CoG–683163) and BIO2016-78955 grant from the Spanish Ministry of Economy and Competitiveness. Exchanges between the Y.J. and T.B. laboratories were funded by Tournesol grant 35656NB. B.K.M. was\r\nfunded by the Omics@vib Marie Curie COFUND and Research Foundation Flanders for a postdoctoral fellowship.","file":[{"file_name":"2021_CurrentBiology_MarquesBueno.pdf","file_size":3458646,"checksum":"30b3393d841fb2b1e2b22fb42b5c8fff","date_created":"2021-02-04T11:37:50Z","file_id":"9090","creator":"dernst","content_type":"application/pdf","relation":"main_file","access_level":"open_access","date_updated":"2021-02-04T11:37:50Z","success":1}],"month":"01","_id":"8824","citation":{"ista":"Marquès-Bueno M, Armengot L, Noack L, Bareille J, Rodriguez Solovey L, Platre M, Bayle V, Liu M, Opdenacker D, Vanneste S, Möller B, Nimchuk Z, Beeckman T, Caño-Delgado A, Friml J, Jaillais Y. 2021. Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. Current Biology. 31(1).","apa":"Marquès-Bueno, M., Armengot, L., Noack, L., Bareille, J., Rodriguez Solovey, L., Platre, M., … Jaillais, Y. (2021). Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2020.10.011\">https://doi.org/10.1016/j.cub.2020.10.011</a>","short":"M. Marquès-Bueno, L. Armengot, L. Noack, J. Bareille, L. Rodriguez Solovey, M. Platre, V. Bayle, M. Liu, D. Opdenacker, S. Vanneste, B. Möller, Z. Nimchuk, T. Beeckman, A. Caño-Delgado, J. Friml, Y. Jaillais, Current Biology 31 (2021).","ieee":"M. Marquès-Bueno <i>et al.</i>, “Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism,” <i>Current Biology</i>, vol. 31, no. 1. Elsevier, 2021.","ama":"Marquès-Bueno M, Armengot L, Noack L, et al. Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. <i>Current Biology</i>. 2021;31(1). doi:<a href=\"https://doi.org/10.1016/j.cub.2020.10.011\">10.1016/j.cub.2020.10.011</a>","mla":"Marquès-Bueno, MM, et al. “Auxin-Regulated Reversible Inhibition of TMK1 Signaling by MAKR2 Modulates the Dynamics of Root Gravitropism.” <i>Current Biology</i>, vol. 31, no. 1, Elsevier, 2021, doi:<a href=\"https://doi.org/10.1016/j.cub.2020.10.011\">10.1016/j.cub.2020.10.011</a>.","chicago":"Marquès-Bueno, MM, L Armengot, LC Noack, J Bareille, Lesia Rodriguez Solovey, MP Platre, V Bayle, et al. “Auxin-Regulated Reversible Inhibition of TMK1 Signaling by MAKR2 Modulates the Dynamics of Root Gravitropism.” <i>Current Biology</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.cub.2020.10.011\">https://doi.org/10.1016/j.cub.2020.10.011</a>."},"date_updated":"2024-10-21T06:02:09Z","publisher":"Elsevier","language":[{"iso":"eng"}]},{"month":"10","page":"926–943 ","_id":"8911","date_updated":"2024-10-22T09:41:03Z","citation":{"ama":"Scappucci G, Kloeffel C, Zwanenburg FA, et al. The germanium quantum information route. <i>Nature Reviews Materials</i>. 2021;6:926–943. doi:<a href=\"https://doi.org/10.1038/s41578-020-00262-z\">10.1038/s41578-020-00262-z</a>","mla":"Scappucci, Giordano, et al. “The Germanium Quantum Information Route.” <i>Nature Reviews Materials</i>, vol. 6, Springer Nature, 2021, pp. 926–943, doi:<a href=\"https://doi.org/10.1038/s41578-020-00262-z\">10.1038/s41578-020-00262-z</a>.","ieee":"G. Scappucci <i>et al.</i>, “The germanium quantum information route,” <i>Nature Reviews Materials</i>, vol. 6. Springer Nature, pp. 926–943, 2021.","short":"G. Scappucci, C. Kloeffel, F.A. Zwanenburg, D. Loss, M. Myronov, J.-J. Zhang, S.D. Franceschi, G. Katsaros, M. Veldhorst, Nature Reviews Materials 6 (2021) 926–943.","apa":"Scappucci, G., Kloeffel, C., Zwanenburg, F. A., Loss, D., Myronov, M., Zhang, J.-J., … Veldhorst, M. (2021). The germanium quantum information route. <i>Nature Reviews Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41578-020-00262-z\">https://doi.org/10.1038/s41578-020-00262-z</a>","ista":"Scappucci G, Kloeffel C, Zwanenburg FA, Loss D, Myronov M, Zhang J-J, Franceschi SD, Katsaros G, Veldhorst M. 2021. The germanium quantum information route. Nature Reviews Materials. 6, 926–943.","chicago":"Scappucci, Giordano, Christoph Kloeffel, Floris A. Zwanenburg, Daniel Loss, Maksym Myronov, Jian-Jun Zhang, Silvano De Franceschi, Georgios Katsaros, and Menno Veldhorst. “The Germanium Quantum Information Route.” <i>Nature Reviews Materials</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1038/s41578-020-00262-z\">https://doi.org/10.1038/s41578-020-00262-z</a>."},"publisher":"Springer Nature","language":[{"iso":"eng"}],"year":"2021","acknowledgement":"G.S., M.W.,F.A.Z acknowledge financial support from The Netherlands Organization for Scientific Research (NWO). F.Z., D.L., G.K. acknowledge funding from the European Union’s Horizon 2020 research and innovation programme under Grand Agreement Nr. 862046. G.K. acknowledges funding from FP7 ERC Starting Grant 335497, FWF Y 715-N30, FWF P-30207. S.D. acknowledges support from the European Union’s Horizon 2020 program under Grant\r\nAgreement No. 81050 and from the Agence Nationale de la Recherche through the TOPONANO and CMOSQSPIN projects. J.Z. acknowledges support from the National Key R&D Program of China (Grant No. 2016YFA0301701) and Strategic Priority Research Program of CAS (Grant No. XDB30000000). D.L. and C.K. acknowledge the Swiss National Science Foundation and NCCR QSIT.","publication_identifier":{"eissn":["2058-8437"]},"quality_controlled":"1","article_processing_charge":"No","publication":"Nature Reviews Materials","type":"journal_article","date_published":"2021-10-01T00:00:00Z","title":"The germanium quantum information route","author":[{"full_name":"Scappucci, Giordano","first_name":"Giordano","last_name":"Scappucci"},{"full_name":"Kloeffel, Christoph","last_name":"Kloeffel","first_name":"Christoph"},{"last_name":"Zwanenburg","first_name":"Floris A.","full_name":"Zwanenburg, Floris A."},{"first_name":"Daniel","last_name":"Loss","full_name":"Loss, Daniel"},{"full_name":"Myronov, Maksym","first_name":"Maksym","last_name":"Myronov"},{"full_name":"Zhang, Jian-Jun","first_name":"Jian-Jun","last_name":"Zhang"},{"last_name":"Franceschi","first_name":"Silvano De","full_name":"Franceschi, Silvano De"},{"orcid":"0000-0001-8342-202X","full_name":"Katsaros, Georgios","first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros"},{"first_name":"Menno","last_name":"Veldhorst","full_name":"Veldhorst, Menno"}],"isi":1,"arxiv":1,"ec_funded":1,"project":[{"call_identifier":"FP7","grant_number":"335497","_id":"25517E86-B435-11E9-9278-68D0E5697425","name":"Towards Spin qubits and Majorana fermions in Germanium self assembled hut-wires"},{"name":"Loch Spin-Qubits und Majorana-Fermionen in Germanium","grant_number":"Y00715","_id":"2552F888-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"name":"Hole spin orbit qubits in Ge quantum wells","_id":"2641CE5E-B435-11E9-9278-68D0E5697425","grant_number":"P30207","call_identifier":"FWF"}],"day":"01","doi":"10.1038/s41578-020-00262-z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"GeKa"}],"status":"public","publication_status":"published","oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/2004.08133","open_access":"1"}],"intvolume":"         6","external_id":{"arxiv":["2004.08133"],"isi":["000600826100003"]},"scopus_import":"1","abstract":[{"text":"In the worldwide endeavor for disruptive quantum technologies, germanium is emerging as a versatile material to realize devices capable of encoding, processing, or transmitting quantum information. These devices leverage special properties of the germanium valence-band states, commonly known as holes, such as their inherently strong spin-orbit coupling and the ability to host superconducting pairing correlations. In this Review, we initially introduce the physics of holes in low-dimensional germanium structures with key insights from a theoretical perspective. We then examine the material science progress underpinning germanium-based planar heterostructures and nanowires. We review the most significant experimental results demonstrating key building blocks for quantum technology, such as an electrically driven universal quantum gate set with spin qubits in quantum dots and superconductor-semiconductor devices for hybrid quantum systems. We conclude by identifying the most promising prospects\r\ntoward scalable quantum information processing. ","lang":"eng"}],"date_created":"2020-12-02T10:52:51Z","volume":6,"article_type":"original","oa_version":"Preprint"},{"file":[{"file_id":"9091","creator":"dernst","file_name":"2021_Liver_Nardo.pdf","date_created":"2021-02-04T12:01:45Z","file_size":930414,"checksum":"6e4f21b77ef22c854e016240974fc473","date_updated":"2021-02-04T12:01:45Z","access_level":"open_access","success":1,"content_type":"application/pdf","relation":"main_file"}],"publisher":"Wiley","language":[{"iso":"eng"}],"month":"01","_id":"8927","page":"20-32","date_updated":"2025-06-12T06:33:00Z","citation":{"chicago":"Nardo, Alexander D., Mathias Schneeweiss-Gleixner, May M Bakail, Emmanuel D. Dixon, Sigurd F. Lax, and Michael Trauner. “Pathophysiological Mechanisms of Liver Injury in COVID-19.” <i>Liver International</i>. Wiley, 2021. <a href=\"https://doi.org/10.1111/liv.14730\">https://doi.org/10.1111/liv.14730</a>.","apa":"Nardo, A. D., Schneeweiss-Gleixner, M., Bakail, M. M., Dixon, E. D., Lax, S. F., &#38; Trauner, M. (2021). Pathophysiological mechanisms of liver injury in COVID-19. <i>Liver International</i>. Wiley. <a href=\"https://doi.org/10.1111/liv.14730\">https://doi.org/10.1111/liv.14730</a>","short":"A.D. Nardo, M. Schneeweiss-Gleixner, M.M. Bakail, E.D. Dixon, S.F. Lax, M. Trauner, Liver International 41 (2021) 20–32.","ista":"Nardo AD, Schneeweiss-Gleixner M, Bakail MM, Dixon ED, Lax SF, Trauner M. 2021. Pathophysiological mechanisms of liver injury in COVID-19. Liver International. 41(1), 20–32.","mla":"Nardo, Alexander D., et al. “Pathophysiological Mechanisms of Liver Injury in COVID-19.” <i>Liver International</i>, vol. 41, no. 1, Wiley, 2021, pp. 20–32, doi:<a href=\"https://doi.org/10.1111/liv.14730\">10.1111/liv.14730</a>.","ama":"Nardo AD, Schneeweiss-Gleixner M, Bakail MM, Dixon ED, Lax SF, Trauner M. Pathophysiological mechanisms of liver injury in COVID-19. <i>Liver International</i>. 2021;41(1):20-32. doi:<a href=\"https://doi.org/10.1111/liv.14730\">10.1111/liv.14730</a>","ieee":"A. D. Nardo, M. Schneeweiss-Gleixner, M. M. Bakail, E. D. Dixon, S. F. Lax, and M. Trauner, “Pathophysiological mechanisms of liver injury in COVID-19,” <i>Liver International</i>, vol. 41, no. 1. Wiley, pp. 20–32, 2021."},"year":"2021","acknowledgement":"This work was supported by grant F7310‐B21 from the Austrian Science Foundation (to MT). We thank Jelena Remetic, Claudia D. Fuchs, Veronika Mlitz and Daniel Steinacher, for their valuable input and discussion. Figure 1 and Figure 2 have been created with BioRender.com.","article_processing_charge":"No","publication_identifier":{"issn":["1478-3223"],"eissn":["1478-3231"]},"quality_controlled":"1","publication":"Liver International","ddc":["570"],"date_published":"2021-01-01T00:00:00Z","type":"journal_article","has_accepted_license":"1","isi":1,"title":"Pathophysiological mechanisms of liver injury in COVID-19","author":[{"last_name":"Nardo","first_name":"Alexander D.","full_name":"Nardo, Alexander D."},{"last_name":"Schneeweiss-Gleixner","first_name":"Mathias","full_name":"Schneeweiss-Gleixner, Mathias"},{"orcid":"0000-0002-9592-1587","last_name":"Bakail","first_name":"May M","id":"FB3C3F8E-522F-11EA-B186-22963DDC885E","full_name":"Bakail, May M"},{"first_name":"Emmanuel D.","last_name":"Dixon","full_name":"Dixon, Emmanuel D."},{"last_name":"Lax","first_name":"Sigurd F.","full_name":"Lax, Sigurd F."},{"full_name":"Trauner, Michael","first_name":"Michael","last_name":"Trauner"}],"doi":"10.1111/liv.14730","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"CampIT"}],"day":"01","publication_status":"published","status":"public","file_date_updated":"2021-02-04T12:01:45Z","oa":1,"issue":"1","intvolume":"        41","scopus_import":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"pmid":["33190346"],"isi":["000594239200001"]},"volume":41,"date_created":"2020-12-06T23:01:16Z","article_type":"original","abstract":[{"text":"The recent outbreak of coronavirus disease 2019 (COVID‐19), caused by the Severe Acute Respiratory Syndrome Coronavirus‐2 (SARS‐CoV‐2) has resulted in a world‐wide pandemic. Disseminated lung injury with the development of acute respiratory distress syndrome (ARDS) is the main cause of mortality in COVID‐19. Although liver failure does not seem to occur in the absence of pre‐existing liver disease, hepatic involvement in COVID‐19 may correlate with overall disease severity and serve as a prognostic factor for the development of ARDS. The spectrum of liver injury in COVID‐19 may range from direct infection by SARS‐CoV‐2, indirect involvement by systemic inflammation, hypoxic changes, iatrogenic causes such as drugs and ventilation to exacerbation of underlying liver disease. This concise review discusses the potential pathophysiological mechanisms for SARS‐CoV‐2 hepatic tropism as well as acute and possibly long‐term liver injury in COVID‐19.","lang":"eng"}],"pmid":1,"oa_version":"Published Version"},{"type":"journal_article","has_accepted_license":"1","date_published":"2021-07-01T00:00:00Z","author":[{"full_name":"Boissonnat, Jean-Daniel","first_name":"Jean-Daniel","last_name":"Boissonnat"},{"full_name":"Kachanovich, Siargey","last_name":"Kachanovich","first_name":"Siargey"},{"orcid":"0000-0002-7472-2220","first_name":"Mathijs","id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","last_name":"Wintraecken","full_name":"Wintraecken, Mathijs"}],"title":"Triangulating submanifolds: An elementary and quantified version of Whitney’s method","ec_funded":1,"isi":1,"quality_controlled":"1","publication_identifier":{"eissn":["1432-0444"],"issn":["0179-5376"]},"article_processing_charge":"Yes (via OA deal)","ddc":["516"],"publication":"Discrete & Computational Geometry","year":"2021","acknowledgement":"This work has been funded by the European Research Council under the European Union’s ERC Grant Agreement Number 339025 GUDHI (Algorithmic Foundations of Geometric Understanding in Higher Dimensions). The third author also received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. Open access funding provided by the Institute of Science and Technology (IST Austria).","file":[{"checksum":"c848986091e56699dc12de85adb1e39c","file_size":983307,"date_created":"2021-08-06T09:52:29Z","file_name":"2021_DescreteCompGeopmetry_Boissonnat.pdf","creator":"kschuh","file_id":"9795","relation":"main_file","content_type":"application/pdf","success":1,"date_updated":"2021-08-06T09:52:29Z","access_level":"open_access"}],"_id":"8940","page":"386-434","date_updated":"2025-04-14T07:43:50Z","citation":{"ieee":"J.-D. Boissonnat, S. Kachanovich, and M. Wintraecken, “Triangulating submanifolds: An elementary and quantified version of Whitney’s method,” <i>Discrete &#38; Computational Geometry</i>, vol. 66, no. 1. Springer Nature, pp. 386–434, 2021.","ama":"Boissonnat J-D, Kachanovich S, Wintraecken M. Triangulating submanifolds: An elementary and quantified version of Whitney’s method. <i>Discrete &#38; Computational Geometry</i>. 2021;66(1):386-434. doi:<a href=\"https://doi.org/10.1007/s00454-020-00250-8\">10.1007/s00454-020-00250-8</a>","mla":"Boissonnat, Jean-Daniel, et al. “Triangulating Submanifolds: An Elementary and Quantified Version of Whitney’s Method.” <i>Discrete &#38; Computational Geometry</i>, vol. 66, no. 1, Springer Nature, 2021, pp. 386–434, doi:<a href=\"https://doi.org/10.1007/s00454-020-00250-8\">10.1007/s00454-020-00250-8</a>.","ista":"Boissonnat J-D, Kachanovich S, Wintraecken M. 2021. Triangulating submanifolds: An elementary and quantified version of Whitney’s method. Discrete &#38; Computational Geometry. 66(1), 386–434.","short":"J.-D. Boissonnat, S. Kachanovich, M. Wintraecken, Discrete &#38; Computational Geometry 66 (2021) 386–434.","apa":"Boissonnat, J.-D., Kachanovich, S., &#38; Wintraecken, M. (2021). Triangulating submanifolds: An elementary and quantified version of Whitney’s method. <i>Discrete &#38; Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-020-00250-8\">https://doi.org/10.1007/s00454-020-00250-8</a>","chicago":"Boissonnat, Jean-Daniel, Siargey Kachanovich, and Mathijs Wintraecken. “Triangulating Submanifolds: An Elementary and Quantified Version of Whitney’s Method.” <i>Discrete &#38; Computational Geometry</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s00454-020-00250-8\">https://doi.org/10.1007/s00454-020-00250-8</a>."},"month":"07","language":[{"iso":"eng"}],"corr_author":"1","publisher":"Springer Nature","abstract":[{"lang":"eng","text":"We quantise Whitney’s construction to prove the existence of a triangulation for any C^2 manifold, so that we get an algorithm with explicit bounds. We also give a new elementary proof, which is completely geometric."}],"article_type":"original","date_created":"2020-12-12T11:07:02Z","volume":66,"oa_version":"Published Version","intvolume":"        66","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"isi":["000597770300001"]},"scopus_import":"1","file_date_updated":"2021-08-06T09:52:29Z","oa":1,"keyword":["Theoretical Computer Science","Computational Theory and Mathematics","Geometry and Topology","Discrete Mathematics and Combinatorics"],"issue":"1","project":[{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"day":"01","department":[{"_id":"HeEd"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","doi":"10.1007/s00454-020-00250-8","status":"public","publication_status":"published"},{"abstract":[{"lang":"eng","text":"The phytohormone auxin plays a central role in shaping plant growth and development. With decades of genetic and biochemical studies, numerous core molecular components and their networks, underlying auxin biosynthesis, transport, and signaling, have been identified. Notably, protein phosphorylation, catalyzed by kinases and oppositely hydrolyzed by phosphatases, has been emerging to be a crucial type of post-translational modification, regulating physiological and developmental auxin output at all levels. In this review, we comprehensively discuss earlier and recent advances in our understanding of genetics, biochemistry, and cell biology of the kinases and phosphatases participating in auxin action. We provide insights into the mechanisms by which reversible protein phosphorylation defines developmental auxin responses, discuss current challenges, and provide our perspectives on future directions involving the integration of the control of protein phosphorylation into the molecular auxin network."}],"article_type":"original","volume":14,"date_created":"2021-01-03T23:01:23Z","oa_version":"Published Version","pmid":1,"intvolume":"        14","external_id":{"pmid":["33186755"],"isi":["000605359400014"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","oa":1,"file_date_updated":"2021-01-07T14:03:53Z","issue":"1","project":[{"name":"Tracing Evolution of Auxin Transport and Polarity in Plants","_id":"261099A6-B435-11E9-9278-68D0E5697425","grant_number":"742985","call_identifier":"H2020"},{"name":"Molecular Mechanism underlying Salicylic Acid Regulation of Endocytic Trafficking in Arabidopsis","grant_number":"723-2015","_id":"256FEF10-B435-11E9-9278-68D0E5697425"}],"day":"04","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"JiFr"}],"doi":"10.1016/j.molp.2020.11.004","status":"public","publication_status":"published","type":"journal_article","has_accepted_license":"1","date_published":"2021-01-04T00:00:00Z","author":[{"full_name":"Tan, Shutang","last_name":"Tan","first_name":"Shutang","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0471-8285"},{"first_name":"Christian","last_name":"Luschnig","full_name":"Luschnig, Christian"},{"orcid":"0000-0002-8302-7596","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří","full_name":"Friml, Jiří"}],"title":"Pho-view of auxin: Reversible protein phosphorylation in auxin biosynthesis, transport and signaling","ec_funded":1,"isi":1,"quality_controlled":"1","publication_identifier":{"eissn":["1752-9867"],"issn":["1674-2052"]},"article_processing_charge":"No","ddc":["580"],"publication":"Molecular Plant","year":"2021","acknowledgement":"This work was supported by the European Union’s Horizon 2020 Program (ERC grant agreement no. 742985 to J.F.). S.T. was funded by a European Molecular Biology Organization (EMBO) long-term postdoctoral fellowship (ALTF 723-2015). C.L. is supported by the Austrian Science Fund (FWF; P 31493).","file":[{"file_name":"2020_MolecularPlant_Tan.pdf","file_size":871088,"checksum":"917e60e57092f22e16beac70b1775ea6","date_created":"2021-01-07T14:03:53Z","file_id":"8995","creator":"dernst","content_type":"application/pdf","relation":"main_file","access_level":"open_access","date_updated":"2021-01-07T14:03:53Z","success":1}],"_id":"8992","citation":{"chicago":"Tan, Shutang, Christian Luschnig, and Jiří Friml. “Pho-View of Auxin: Reversible Protein Phosphorylation in Auxin Biosynthesis, Transport and Signaling.” <i>Molecular Plant</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.molp.2020.11.004\">https://doi.org/10.1016/j.molp.2020.11.004</a>.","ieee":"S. Tan, C. Luschnig, and J. Friml, “Pho-view of auxin: Reversible protein phosphorylation in auxin biosynthesis, transport and signaling,” <i>Molecular Plant</i>, vol. 14, no. 1. Elsevier, pp. 151–165, 2021.","mla":"Tan, Shutang, et al. “Pho-View of Auxin: Reversible Protein Phosphorylation in Auxin Biosynthesis, Transport and Signaling.” <i>Molecular Plant</i>, vol. 14, no. 1, Elsevier, 2021, pp. 151–65, doi:<a href=\"https://doi.org/10.1016/j.molp.2020.11.004\">10.1016/j.molp.2020.11.004</a>.","ama":"Tan S, Luschnig C, Friml J. Pho-view of auxin: Reversible protein phosphorylation in auxin biosynthesis, transport and signaling. <i>Molecular Plant</i>. 2021;14(1):151-165. doi:<a href=\"https://doi.org/10.1016/j.molp.2020.11.004\">10.1016/j.molp.2020.11.004</a>","ista":"Tan S, Luschnig C, Friml J. 2021. Pho-view of auxin: Reversible protein phosphorylation in auxin biosynthesis, transport and signaling. Molecular Plant. 14(1), 151–165.","apa":"Tan, S., Luschnig, C., &#38; Friml, J. (2021). Pho-view of auxin: Reversible protein phosphorylation in auxin biosynthesis, transport and signaling. <i>Molecular Plant</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.molp.2020.11.004\">https://doi.org/10.1016/j.molp.2020.11.004</a>","short":"S. Tan, C. Luschnig, J. Friml, Molecular Plant 14 (2021) 151–165."},"page":"151-165","date_updated":"2025-07-10T12:01:28Z","month":"01","language":[{"iso":"eng"}],"publisher":"Elsevier"},{"year":"2021","acknowledgement":"This work was supported in part by Tum stipend of Knafelj foundation (to B.K.), Austrian Science Fund (FWF) standalone grants P 27201-B22 (to T.B.) and P 28844(to G.T.), HFSP program Grant RGP0042/2013 (to T.B.), German Research Foundation (DFG) individual grant BO 3502/2-1 (to T.B.), and German Research Foundation (DFG) Collaborative Research Centre (SFB) 1310 (to T.B.). ","file":[{"file_name":"2021_PlosComBio_Kavcic.pdf","file_size":3690053,"checksum":"e29f2b42651bef8e034781de8781ffac","date_created":"2021-02-04T12:30:48Z","file_id":"9092","creator":"dernst","content_type":"application/pdf","relation":"main_file","access_level":"open_access","date_updated":"2021-02-04T12:30:48Z","success":1}],"_id":"8997","citation":{"ama":"Kavcic B, Tkačik G, Bollenbach MT. Minimal biophysical model of combined antibiotic action. <i>PLOS Computational Biology</i>. 2021;17. doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1008529\">10.1371/journal.pcbi.1008529</a>","mla":"Kavcic, Bor, et al. “Minimal Biophysical Model of Combined Antibiotic Action.” <i>PLOS Computational Biology</i>, vol. 17, e1008529, Public Library of Science, 2021, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1008529\">10.1371/journal.pcbi.1008529</a>.","ieee":"B. Kavcic, G. Tkačik, and M. T. Bollenbach, “Minimal biophysical model of combined antibiotic action,” <i>PLOS Computational Biology</i>, vol. 17. Public Library of Science, 2021.","short":"B. Kavcic, G. Tkačik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).","apa":"Kavcic, B., Tkačik, G., &#38; Bollenbach, M. T. (2021). Minimal biophysical model of combined antibiotic action. <i>PLOS Computational Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1008529\">https://doi.org/10.1371/journal.pcbi.1008529</a>","ista":"Kavcic B, Tkačik G, Bollenbach MT. 2021. Minimal biophysical model of combined antibiotic action. PLOS Computational Biology. 17, e1008529.","chicago":"Kavcic, Bor, Gašper Tkačik, and Mark Tobias Bollenbach. “Minimal Biophysical Model of Combined Antibiotic Action.” <i>PLOS Computational Biology</i>. Public Library of Science, 2021. <a href=\"https://doi.org/10.1371/journal.pcbi.1008529\">https://doi.org/10.1371/journal.pcbi.1008529</a>."},"date_updated":"2025-06-12T06:33:18Z","month":"01","language":[{"iso":"eng"}],"publisher":"Public Library of Science","has_accepted_license":"1","type":"journal_article","date_published":"2021-01-07T00:00:00Z","author":[{"orcid":"0000-0001-6041-254X","last_name":"Kavcic","first_name":"Bor","id":"350F91D2-F248-11E8-B48F-1D18A9856A87","full_name":"Kavcic, Bor"},{"last_name":"Tkačik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gašper","full_name":"Tkačik, Gašper","orcid":"0000-0002-6699-1455"},{"full_name":"Bollenbach, Tobias","first_name":"Tobias","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","last_name":"Bollenbach","orcid":"0000-0003-4398-476X"}],"title":"Minimal biophysical model of combined antibiotic action","isi":1,"quality_controlled":"1","publication_identifier":{"issn":["1553-7358"]},"article_processing_charge":"Yes","ddc":["570"],"publication":"PLOS Computational Biology","oa":1,"file_date_updated":"2021-02-04T12:30:48Z","keyword":["Modelling and Simulation","Genetics","Molecular Biology","Antibiotics","Drug interactions"],"project":[{"name":"Revealing the mechanisms underlying drug interactions","grant_number":"P27201-B22","_id":"25E9AF9E-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"call_identifier":"FWF","grant_number":"P28844-B27","_id":"254E9036-B435-11E9-9278-68D0E5697425","name":"Biophysics of information processing in gene regulation"}],"day":"07","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"GaTk"}],"doi":"10.1371/journal.pcbi.1008529","status":"public","publication_status":"published","abstract":[{"text":"Phenomenological relations such as Ohm’s or Fourier’s law have a venerable history in physics but are still scarce in biology. This situation restrains predictive theory. Here, we build on bacterial “growth laws,” which capture physiological feedback between translation and cell growth, to construct a minimal biophysical model for the combined action of ribosome-targeting antibiotics. Our model predicts drug interactions like antagonism or synergy solely from responses to individual drugs. We provide analytical results for limiting cases, which agree well with numerical results. We systematically refine the model by including direct physical interactions of different antibiotics on the ribosome. In a limiting case, our model provides a mechanistic underpinning for recent predictions of higher-order interactions that were derived using entropy maximization. We further refine the model to include the effects of antibiotics that mimic starvation and the presence of resistance genes. We describe the impact of a starvation-mimicking antibiotic on drug interactions analytically and verify it experimentally. Our extended model suggests a change in the type of drug interaction that depends on the strength of resistance, which challenges established rescaling paradigms. We experimentally show that the presence of unregulated resistance genes can lead to altered drug interaction, which agrees with the prediction of the model. While minimal, the model is readily adaptable and opens the door to predicting interactions of second and higher-order in a broad range of biological systems.","lang":"eng"}],"article_number":"e1008529","related_material":{"record":[{"id":"8930","relation":"research_data","status":"public"},{"relation":"earlier_version","id":"7673","status":"public"}]},"article_type":"original","volume":17,"date_created":"2021-01-08T07:16:18Z","oa_version":"Published Version","pmid":1,"intvolume":"        17","external_id":{"pmid":["33411759"],"isi":["000608045000010"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1"},{"intvolume":"        23","scopus_import":"1","external_id":{"pmid":["33396499"],"isi":["000610135400001"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_type":"original","date_created":"2021-01-10T23:01:17Z","volume":23,"abstract":[{"text":"In many basic shear flows, such as pipe, Couette, and channel flow, turbulence does not\r\narise from an instability of the laminar state, and both dynamical states co-exist. With decreasing flow speed (i.e., decreasing Reynolds number) the fraction of fluid in laminar motion increases while turbulence recedes and eventually the entire flow relaminarizes. The first step towards understanding the nature of this transition is to determine if the phase change is of either first or second order. In the former case, the turbulent fraction would drop discontinuously to zero as the Reynolds number decreases while in the latter the process would be continuous. For Couette flow, the flow between two parallel plates, earlier studies suggest a discontinuous scenario. In the present study we realize a Couette flow between two concentric cylinders which allows studies to be carried out in large aspect ratios and for extensive observation times. The presented measurements show that the transition in this circular Couette geometry is continuous suggesting that former studies were limited by finite size effects. A further characterization of this transition, in particular its relation to the directed percolation universality class, requires even larger system sizes than presently available. ","lang":"eng"}],"article_number":"58","oa_version":"Published Version","pmid":1,"department":[{"_id":"BjHo"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.3390/e23010058","day":"01","publication_status":"published","status":"public","file_date_updated":"2021-01-11T07:50:32Z","oa":1,"issue":"1","article_processing_charge":"No","quality_controlled":"1","publication_identifier":{"eissn":["1099-4300"]},"publication":"Entropy","ddc":["530"],"date_published":"2021-01-01T00:00:00Z","type":"journal_article","has_accepted_license":"1","isi":1,"author":[{"full_name":"Avila, Kerstin","last_name":"Avila","id":"fcf74381-53e1-11eb-a6dc-b0e2acf78757","first_name":"Kerstin"},{"orcid":"0000-0003-2057-2754","full_name":"Hof, Björn","first_name":"Björn","id":"3A374330-F248-11E8-B48F-1D18A9856A87","last_name":"Hof"}],"title":"Second-order phase transition in counter-rotating taylor-couette flow experiment","file":[{"checksum":"3ba3dd8b7eecff713b72c5e9ba30d626","file_size":9456389,"date_created":"2021-01-11T07:50:32Z","file_name":"2021_Entropy_Avila.pdf","creator":"dernst","file_id":"9003","relation":"main_file","content_type":"application/pdf","success":1,"access_level":"open_access","date_updated":"2021-01-11T07:50:32Z"}],"language":[{"iso":"eng"}],"publisher":"MDPI","citation":{"short":"K. Avila, B. Hof, Entropy 23 (2021).","apa":"Avila, K., &#38; Hof, B. (2021). Second-order phase transition in counter-rotating taylor-couette flow experiment. <i>Entropy</i>. MDPI. <a href=\"https://doi.org/10.3390/e23010058\">https://doi.org/10.3390/e23010058</a>","ista":"Avila K, Hof B. 2021. Second-order phase transition in counter-rotating taylor-couette flow experiment. Entropy. 23(1), 58.","mla":"Avila, Kerstin, and Björn Hof. “Second-Order Phase Transition in Counter-Rotating Taylor-Couette Flow Experiment.” <i>Entropy</i>, vol. 23, no. 1, 58, MDPI, 2021, doi:<a href=\"https://doi.org/10.3390/e23010058\">10.3390/e23010058</a>.","ama":"Avila K, Hof B. Second-order phase transition in counter-rotating taylor-couette flow experiment. <i>Entropy</i>. 2021;23(1). doi:<a href=\"https://doi.org/10.3390/e23010058\">10.3390/e23010058</a>","ieee":"K. Avila and B. Hof, “Second-order phase transition in counter-rotating taylor-couette flow experiment,” <i>Entropy</i>, vol. 23, no. 1. MDPI, 2021.","chicago":"Avila, Kerstin, and Björn Hof. “Second-Order Phase Transition in Counter-Rotating Taylor-Couette Flow Experiment.” <i>Entropy</i>. MDPI, 2021. <a href=\"https://doi.org/10.3390/e23010058\">https://doi.org/10.3390/e23010058</a>."},"_id":"8999","date_updated":"2023-08-07T13:31:07Z","month":"01","year":"2021","acknowledgement":"This research was funded by the Central Research Development Fund of the University of\r\nBremen grant number ZF04B /2019/FB04 Avila_Kerstin (“Independent Project for Postdocs”). Shreyas Jalikop is acknowledged for recording some of the lifetime measurements\r\n"},{"doi":"10.1109/TIT.2020.3038806","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"MaMo"}],"day":"01","publication_status":"published","status":"public","oa":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1711.01339","open_access":"1"}],"issue":"9","intvolume":"        67","scopus_import":"1","external_id":{"isi":["000690440100007"],"arxiv":["1711.01339"]},"volume":67,"date_created":"2021-01-10T23:01:18Z","article_type":"original","related_material":{"record":[{"relation":"earlier_version","id":"6665","status":"public"}]},"abstract":[{"lang":"eng","text":" We prove that, for the binary erasure channel (BEC), the polar-coding paradigm gives rise to codes that not only approach the Shannon limit but do so under the best possible scaling of their block length as a function of the gap to capacity. This result exhibits the first known family of binary codes that attain both optimal scaling and quasi-linear complexity of encoding and decoding. Our proof is based on the construction and analysis of binary polar codes with large kernels. When communicating reliably at rates within ε>0 of capacity, the code length n often scales as O(1/εμ), where the constant μ is called the scaling exponent. It is known that the optimal scaling exponent is μ=2, and it is achieved by random linear codes. The scaling exponent of conventional polar codes (based on the 2×2 kernel) on the BEC is μ=3.63. This falls far short of the optimal scaling guaranteed by random codes. Our main contribution is a rigorous proof of the following result: for the BEC, there exist ℓ×ℓ binary kernels, such that polar codes constructed from these kernels achieve scaling exponent μ(ℓ) that tends to the optimal value of 2 as ℓ grows. We furthermore characterize precisely how large ℓ needs to be as a function of the gap between μ(ℓ) and 2. The resulting binary codes maintain the recursive structure of conventional polar codes, and thereby achieve construction complexity O(n) and encoding/decoding complexity O(nlogn)."}],"OA_type":"green","oa_version":"Preprint","publisher":"IEEE","language":[{"iso":"eng"}],"month":"09","page":"5693-5710","_id":"9002","citation":{"ieee":"A. Fazeli, H. Hassani, M. Mondelli, and A. Vardy, “Binary linear codes with optimal scaling: Polar codes with large kernels,” <i>IEEE Transactions on Information Theory</i>, vol. 67, no. 9. IEEE, pp. 5693–5710, 2021.","ama":"Fazeli A, Hassani H, Mondelli M, Vardy A. Binary linear codes with optimal scaling: Polar codes with large kernels. <i>IEEE Transactions on Information Theory</i>. 2021;67(9):5693-5710. doi:<a href=\"https://doi.org/10.1109/TIT.2020.3038806\">10.1109/TIT.2020.3038806</a>","mla":"Fazeli, Arman, et al. “Binary Linear Codes with Optimal Scaling: Polar Codes with Large Kernels.” <i>IEEE Transactions on Information Theory</i>, vol. 67, no. 9, IEEE, 2021, pp. 5693–710, doi:<a href=\"https://doi.org/10.1109/TIT.2020.3038806\">10.1109/TIT.2020.3038806</a>.","ista":"Fazeli A, Hassani H, Mondelli M, Vardy A. 2021. Binary linear codes with optimal scaling: Polar codes with large kernels. IEEE Transactions on Information Theory. 67(9), 5693–5710.","apa":"Fazeli, A., Hassani, H., Mondelli, M., &#38; Vardy, A. (2021). Binary linear codes with optimal scaling: Polar codes with large kernels. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/TIT.2020.3038806\">https://doi.org/10.1109/TIT.2020.3038806</a>","short":"A. Fazeli, H. Hassani, M. Mondelli, A. Vardy, IEEE Transactions on Information Theory 67 (2021) 5693–5710.","chicago":"Fazeli, Arman, Hamed Hassani, Marco Mondelli, and Alexander Vardy. “Binary Linear Codes with Optimal Scaling: Polar Codes with Large Kernels.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2021. <a href=\"https://doi.org/10.1109/TIT.2020.3038806\">https://doi.org/10.1109/TIT.2020.3038806</a>."},"date_updated":"2025-09-10T09:59:12Z","year":"2021","OA_place":"repository","article_processing_charge":"No","publication_identifier":{"issn":["0018-9448"],"eissn":["1557-9654"]},"quality_controlled":"1","publication":"IEEE Transactions on Information Theory","date_published":"2021-09-01T00:00:00Z","type":"journal_article","isi":1,"arxiv":1,"title":"Binary linear codes with optimal scaling: Polar codes with large kernels","author":[{"last_name":"Fazeli","first_name":"Arman","full_name":"Fazeli, Arman"},{"full_name":"Hassani, Hamed","last_name":"Hassani","first_name":"Hamed"},{"full_name":"Mondelli, Marco","last_name":"Mondelli","first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020"},{"full_name":"Vardy, Alexander","first_name":"Alexander","last_name":"Vardy"}]},{"month":"02","_id":"9009","citation":{"chicago":"Grosser, Joshua A., Margaret E Maes, and Robert W. Nickells. “Characteristics of Intracellular Propagation of Mitochondrial BAX Recruitment during Apoptosis.” <i>Apoptosis</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s10495-020-01654-w\">https://doi.org/10.1007/s10495-020-01654-w</a>.","ista":"Grosser JA, Maes ME, Nickells RW. 2021. Characteristics of intracellular propagation of mitochondrial BAX recruitment during apoptosis. Apoptosis. 26(2), 132–145.","apa":"Grosser, J. A., Maes, M. E., &#38; Nickells, R. W. (2021). Characteristics of intracellular propagation of mitochondrial BAX recruitment during apoptosis. <i>Apoptosis</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10495-020-01654-w\">https://doi.org/10.1007/s10495-020-01654-w</a>","short":"J.A. Grosser, M.E. Maes, R.W. Nickells, Apoptosis 26 (2021) 132–145.","ieee":"J. A. Grosser, M. E. Maes, and R. W. Nickells, “Characteristics of intracellular propagation of mitochondrial BAX recruitment during apoptosis,” <i>Apoptosis</i>, vol. 26, no. 2. Springer Nature, pp. 132–145, 2021.","mla":"Grosser, Joshua A., et al. “Characteristics of Intracellular Propagation of Mitochondrial BAX Recruitment during Apoptosis.” <i>Apoptosis</i>, vol. 26, no. 2, Springer Nature, 2021, pp. 132–45, doi:<a href=\"https://doi.org/10.1007/s10495-020-01654-w\">10.1007/s10495-020-01654-w</a>.","ama":"Grosser JA, Maes ME, Nickells RW. Characteristics of intracellular propagation of mitochondrial BAX recruitment during apoptosis. <i>Apoptosis</i>. 2021;26(2):132-145. doi:<a href=\"https://doi.org/10.1007/s10495-020-01654-w\">10.1007/s10495-020-01654-w</a>"},"date_updated":"2023-08-07T13:32:40Z","page":"132-145","publisher":"Springer Nature","language":[{"iso":"eng"}],"acknowledgement":"This work was supported by National Institute of Health grants R01 EY030123, P30 EY016665, and T32 GM081061, an unrestricted research grant from Research to Prevent Blindness, Inc., and the Frederick A. Davis Endowment from the Department of Ophthalmology and Visual Sciences at the University of Wisconsin-Madison.","year":"2021","publication":"Apoptosis","publication_identifier":{"issn":["1360-8185"],"eissn":["1573-675X"]},"quality_controlled":"1","article_processing_charge":"No","title":"Characteristics of intracellular propagation of mitochondrial BAX recruitment during apoptosis","author":[{"full_name":"Grosser, Joshua A.","first_name":"Joshua A.","last_name":"Grosser"},{"id":"3838F452-F248-11E8-B48F-1D18A9856A87","first_name":"Margaret E","last_name":"Maes","full_name":"Maes, Margaret E","orcid":"0000-0001-9642-1085"},{"full_name":"Nickells, Robert W.","first_name":"Robert W.","last_name":"Nickells"}],"isi":1,"type":"journal_article","date_published":"2021-02-01T00:00:00Z","status":"public","publication_status":"published","day":"01","doi":"10.1007/s10495-020-01654-w","department":[{"_id":"SaSi"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","issue":"2","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8082518/","open_access":"1"}],"oa":1,"external_id":{"pmid":["33426618"],"isi":["000606722600001"]},"scopus_import":"1","intvolume":"        26","pmid":1,"oa_version":"Submitted Version","abstract":[{"text":"Recent advancements in live cell imaging technologies have identified the phenomenon of intracellular propagation of late apoptotic events, such as cytochrome c release and caspase activation. The mechanism, prevalence, and speed of apoptosis propagation remain unclear. Additionally, no studies have demonstrated propagation of the pro-apoptotic protein, BAX. To evaluate the role of BAX in intracellular apoptotic propagation, we used high speed live-cell imaging to visualize fluorescently tagged-BAX recruitment to mitochondria in four immortalized cell lines. We show that propagation of mitochondrial BAX recruitment occurs in parallel to cytochrome c and SMAC/Diablo release and is affected by cellular morphology, such that cells with processes are more likely to exhibit propagation. The initiation of propagation events is most prevalent in the distal tips of processes, while the rate of propagation is influenced by the 2-dimensional width of the process. Propagation was rarely observed in the cell soma, which exhibited near synchronous recruitment of BAX. Propagation velocity is not affected by mitochondrial volume in segments of processes, but is negatively affected by mitochondrial density. There was no evidence of a propagating wave of increased levels of intracellular calcium ions. Alternatively, we did observe a uniform increase in superoxide build-up in cellular mitochondria, which was released as a propagating wave simultaneously with the propagating recruitment of BAX to the mitochondrial outer membrane.","lang":"eng"}],"volume":26,"date_created":"2021-01-17T23:01:11Z","article_type":"original"},{"file_date_updated":"2021-01-19T11:11:14Z","oa":1,"issue":"1","department":[{"_id":"MaSe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.3390/e23010125","project":[{"name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","call_identifier":"H2020"}],"day":"19","publication_status":"published","status":"public","article_type":"original","date_created":"2021-01-19T11:12:06Z","volume":23,"abstract":[{"text":"We study dynamics and thermodynamics of ion transport in narrow, water-filled channels, considered as effective 1D Coulomb systems. The long range nature of the inter-ion interactions comes about due to the dielectric constants mismatch between the water and the surrounding medium, confining the electric filed to stay mostly within the water-filled channel. Statistical mechanics of such Coulomb systems is dominated by entropic effects which may be accurately accounted for by mapping onto an effective quantum mechanics. In presence of multivalent ions the corresponding quantum mechanics appears to be non-Hermitian. In this review we discuss a framework for semiclassical calculations for the effective non-Hermitian Hamiltonians. Non-Hermiticity elevates WKB action integrals from the real line to closed cycles on a complex Riemann surfaces where direct calculations are not attainable. We circumvent this issue by applying tools from algebraic topology, such as the Picard-Fuchs equation. We discuss how its solutions relate to the thermodynamics and correlation functions of multivalent solutions within narrow, water-filled channels. ","lang":"eng"}],"article_number":"e23010125","oa_version":"Published Version","pmid":1,"intvolume":"        23","scopus_import":"1","external_id":{"isi":["000610122000001"],"arxiv":["2012.01390"],"pmid":["33477903"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2021","acknowledgement":"A.K. was supported by NSF grants DMR-2037654. T.G. acknowledges funding from the Institute of Science and Technology (IST) Austria, and from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 754411.\r\nWe are indebted to Boris Shklovskii for introducing us to the problem, and Alexander Gorsky and Peter Koroteev for introducing us to the Picard-Fuchs methods. A very special thanks goes to Michael Janas for several years of excellent collaboration on these topics. TG thanks Michael Kreshchuk for introduction to the exact WKB method and great collaboration on related projects. Figure 3 and Figure 4 are reproduced from Reference [25] with friendly permission by the Russian Academy of Sciences. Figure 2, Figure 4, Figure 5, Figure 6, and Figure 8 are reproduced from Reference [26] with friendly permission by IOP Publishing.","file":[{"creator":"tgulden","file_id":"9021","date_created":"2021-01-19T11:11:14Z","file_size":981285,"checksum":"6cd0e706156827c45c740534bd32c179","file_name":"Final published paper.pdf","access_level":"open_access","date_updated":"2021-01-19T11:11:14Z","relation":"main_file","content_type":"application/pdf"}],"language":[{"iso":"eng"}],"publisher":"MDPI","citation":{"ama":"Gulden T, Kamenev A. Dynamics of ion channels via non-hermitian quantum mechanics. <i>Entropy</i>. 2021;23(1). doi:<a href=\"https://doi.org/10.3390/e23010125\">10.3390/e23010125</a>","mla":"Gulden, Tobias, and Alex Kamenev. “Dynamics of Ion Channels via Non-Hermitian Quantum Mechanics.” <i>Entropy</i>, vol. 23, no. 1, e23010125, MDPI, 2021, doi:<a href=\"https://doi.org/10.3390/e23010125\">10.3390/e23010125</a>.","ieee":"T. Gulden and A. Kamenev, “Dynamics of ion channels via non-hermitian quantum mechanics,” <i>Entropy</i>, vol. 23, no. 1. MDPI, 2021.","apa":"Gulden, T., &#38; Kamenev, A. (2021). Dynamics of ion channels via non-hermitian quantum mechanics. <i>Entropy</i>. MDPI. <a href=\"https://doi.org/10.3390/e23010125\">https://doi.org/10.3390/e23010125</a>","short":"T. Gulden, A. Kamenev, Entropy 23 (2021).","ista":"Gulden T, Kamenev A. 2021. Dynamics of ion channels via non-hermitian quantum mechanics. Entropy. 23(1), e23010125.","chicago":"Gulden, Tobias, and Alex Kamenev. “Dynamics of Ion Channels via Non-Hermitian Quantum Mechanics.” <i>Entropy</i>. MDPI, 2021. <a href=\"https://doi.org/10.3390/e23010125\">https://doi.org/10.3390/e23010125</a>."},"_id":"9020","date_updated":"2025-06-12T06:33:38Z","month":"01","date_published":"2021-01-19T00:00:00Z","has_accepted_license":"1","type":"journal_article","arxiv":1,"ec_funded":1,"isi":1,"author":[{"orcid":"0000-0001-6814-7541","full_name":"Gulden, Tobias","last_name":"Gulden","first_name":"Tobias","id":"1083E038-9F73-11E9-A4B5-532AE6697425"},{"last_name":"Kamenev","first_name":"Alex","full_name":"Kamenev, Alex"}],"title":"Dynamics of ion channels via non-hermitian quantum mechanics","article_processing_charge":"Yes","quality_controlled":"1","publication_identifier":{"eissn":["1099-4300"]},"publication":"Entropy","ddc":["530"]},{"year":"2021","acknowledgement":"D. Virosztek was supported by the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 846294, and partially supported by the Hungarian National Research, Development and Innovation Office (NKFIH) via grants no. K124152, and no. KH129601.","month":"03","citation":{"ama":"Virosztek D. The metric property of the quantum Jensen-Shannon divergence. <i>Advances in Mathematics</i>. 2021;380(3). doi:<a href=\"https://doi.org/10.1016/j.aim.2021.107595\">10.1016/j.aim.2021.107595</a>","mla":"Virosztek, Daniel. “The Metric Property of the Quantum Jensen-Shannon Divergence.” <i>Advances in Mathematics</i>, vol. 380, no. 3, 107595, Elsevier, 2021, doi:<a href=\"https://doi.org/10.1016/j.aim.2021.107595\">10.1016/j.aim.2021.107595</a>.","ieee":"D. Virosztek, “The metric property of the quantum Jensen-Shannon divergence,” <i>Advances in Mathematics</i>, vol. 380, no. 3. Elsevier, 2021.","apa":"Virosztek, D. (2021). The metric property of the quantum Jensen-Shannon divergence. <i>Advances in Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.aim.2021.107595\">https://doi.org/10.1016/j.aim.2021.107595</a>","short":"D. Virosztek, Advances in Mathematics 380 (2021).","ista":"Virosztek D. 2021. The metric property of the quantum Jensen-Shannon divergence. Advances in Mathematics. 380(3), 107595.","chicago":"Virosztek, Daniel. “The Metric Property of the Quantum Jensen-Shannon Divergence.” <i>Advances in Mathematics</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.aim.2021.107595\">https://doi.org/10.1016/j.aim.2021.107595</a>."},"_id":"9036","date_updated":"2025-04-14T07:50:40Z","publisher":"Elsevier","language":[{"iso":"eng"}],"type":"journal_article","date_published":"2021-03-26T00:00:00Z","title":"The metric property of the quantum Jensen-Shannon divergence","author":[{"id":"48DB45DA-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel","last_name":"Virosztek","full_name":"Virosztek, Daniel","orcid":"0000-0003-1109-5511"}],"isi":1,"ec_funded":1,"arxiv":1,"publication_identifier":{"issn":["0001-8708"]},"quality_controlled":"1","article_processing_charge":"No","publication":"Advances in Mathematics","main_file_link":[{"url":"https://arxiv.org/abs/1910.10447","open_access":"1"}],"oa":1,"keyword":["General Mathematics"],"issue":"3","day":"26","project":[{"grant_number":"846294","_id":"26A455A6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Geometric study of Wasserstein spaces and free probability"}],"doi":"10.1016/j.aim.2021.107595","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"LaEr"}],"status":"public","publication_status":"published","article_number":"107595","abstract":[{"lang":"eng","text":"In this short note, we prove that the square root of the quantum Jensen-Shannon divergence is a true metric on the cone of positive matrices, and hence in particular on the quantum state space."}],"date_created":"2021-01-22T17:55:17Z","volume":380,"article_type":"original","oa_version":"Preprint","intvolume":"       380","external_id":{"arxiv":["1910.10447"],"isi":["000619676100035"]},"scopus_import":"1"}]