[{"year":"2021","doi":"10.3866/PKU.WHXB202108017","fulldoi":"https://doi.org/10.3866/PKU.WHXB202108017","day":"13","abstract":[{"text":"Research on two-dimensional (2D) materials has been explosively increasing in last seventeen years in varying subjects including condensed matter physics, electronic engineering, materials science, and chemistry since the mechanical exfoliation of graphene in 2004. Starting from graphene, 2D materials now have become a big family with numerous members and diverse categories. The unique structural features and physicochemical properties of 2D materials make them one class of the most appealing candidates for a wide range of potential applications. In particular, we have seen some major breakthroughs made in the field of 2D materials in last five years not only in developing novel synthetic methods and exploring new structures/properties but also in identifying innovative applications and pushing forward commercialisation. In this review, we provide a critical summary on the recent progress made in the field of 2D materials with a particular focus on last five years. After a brief background introduction, we first discuss the major synthetic methods for 2D materials, including the mechanical exfoliation, liquid exfoliation, vapor phase deposition, and wet-chemical synthesis as well as phase engineering of 2D materials belonging to the field of phase engineering of nanomaterials (PEN). We then introduce the superconducting/optical/magnetic properties and chirality of 2D materials along with newly emerging magic angle 2D superlattices. Following that, the promising applications of 2D materials in electronics, optoelectronics, catalysis, energy storage, solar cells, biomedicine, sensors, environments, etc. are described sequentially. Thereafter, we present the theoretic calculations and simulations of 2D materials. Finally, after concluding the current progress, we provide some personal discussions on the existing challenges and future outlooks in this rapidly developing field. ","lang":"eng"}],"volume":37,"main_file_link":[{"url":"https://doi.org/10.3866/PKU.WHXB202108017","open_access":"1"}],"external_id":{"isi":["000731879300002"]},"publication":"Acta Physico-Chimica Sinica","publisher":"Peking University","department":[{"_id":"MaIb"}],"oa":1,"publication_identifier":{"issn":["1001-4861"]},"_id":"14800","title":"Recent progress on two-dimensional materials","scopus_import":"1","article_number":"2108017","intvolume":"        37","date_published":"2021-10-13T00:00:00Z","article_type":"review","status":"public","issue":"12","isi":1,"language":[{"iso":"eng"}],"date_updated":"2025-09-10T10:12:25Z","date_created":"2024-01-14T23:00:58Z","article_processing_charge":"No","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"10","citation":{"apa":"Chang, C., Chen, W., Chen, Y., Chen, Y., Chen, Y., Ding, F., … Liu, Z. (2021). Recent progress on two-dimensional materials. <i>Acta Physico-Chimica Sinica</i>. Peking University. <a href=\"https://doi.org/10.3866/PKU.WHXB202108017\">https://doi.org/10.3866/PKU.WHXB202108017</a>","ieee":"C. Chang <i>et al.</i>, “Recent progress on two-dimensional materials,” <i>Acta Physico-Chimica Sinica</i>, vol. 37, no. 12. Peking University, 2021.","ama":"Chang C, Chen W, Chen Y, et al. Recent progress on two-dimensional materials. <i>Acta Physico-Chimica Sinica</i>. 2021;37(12). doi:<a href=\"https://doi.org/10.3866/PKU.WHXB202108017\">10.3866/PKU.WHXB202108017</a>","chicago":"Chang, Cheng, Wei Chen, Ye Chen, Yonghua Chen, Yu Chen, Feng Ding, Chunhai Fan, et al. “Recent Progress on Two-Dimensional Materials.” <i>Acta Physico-Chimica Sinica</i>. Peking University, 2021. <a href=\"https://doi.org/10.3866/PKU.WHXB202108017\">https://doi.org/10.3866/PKU.WHXB202108017</a>.","mla":"Chang, Cheng, et al. “Recent Progress on Two-Dimensional Materials.” <i>Acta Physico-Chimica Sinica</i>, vol. 37, no. 12, 2108017, Peking University, 2021, doi:<a href=\"https://doi.org/10.3866/PKU.WHXB202108017\">10.3866/PKU.WHXB202108017</a>.","short":"C. Chang, W. Chen, Y. Chen, Y. Chen, Y. Chen, F. Ding, C. Fan, H.J. Fan, Z. Fan, C. Gong, Y. Gong, Q. He, X. Hong, S. Hu, W. Hu, W. Huang, Y. Huang, W. Ji, D. Li, L.J. Li, Q. Li, L. Lin, C. Ling, M. Liu, N. Liu, Z. Liu, K.P. Loh, J. Ma, F. Miao, H. Peng, M. Shao, L. Song, S. Su, S. Sun, C. Tan, Z. Tang, D. Wang, H. Wang, J. Wang, X. Wang, X. Wang, A.T.S. Wee, Z. Wei, Y. Wu, Z.S. Wu, J. Xiong, Q. Xiong, W. Xu, P. Yin, H. Zeng, Z. Zeng, T. Zhai, H. Zhang, H. Zhang, Q. Zhang, T. Zhang, X. Zhang, L.D. Zhao, M. Zhao, W. Zhao, Y. Zhao, K.G. Zhou, X. Zhou, Y. Zhou, H. Zhu, H. Zhang, Z. Liu, Acta Physico-Chimica Sinica 37 (2021).","ista":"Chang C, Chen W, Chen Y, Chen Y, Chen Y, Ding F, Fan C, Fan HJ, Fan Z, Gong C, Gong Y, He Q, Hong X, Hu S, Hu W, Huang W, Huang Y, Ji W, Li D, Li LJ, Li Q, Lin L, Ling C, Liu M, Liu N, Liu Z, Loh KP, Ma J, Miao F, Peng H, Shao M, Song L, Su S, Sun S, Tan C, Tang Z, Wang D, Wang H, Wang J, Wang X, Wang X, Wee ATS, Wei Z, Wu Y, Wu ZS, Xiong J, Xiong Q, Xu W, Yin P, Zeng H, Zeng Z, Zhai T, Zhang H, Zhang H, Zhang Q, Zhang T, Zhang X, Zhao LD, Zhao M, Zhao W, Zhao Y, Zhou KG, Zhou X, Zhou Y, Zhu H, Zhang H, Liu Z. 2021. Recent progress on two-dimensional materials. Acta Physico-Chimica Sinica. 37(12), 2108017."},"oa_version":"Submitted Version","author":[{"full_name":"Chang, Cheng","first_name":"Cheng","last_name":"Chang","id":"9E331C2E-9F27-11E9-AE48-5033E6697425","orcid":"0000-0002-9515-4277"},{"first_name":"Wei","full_name":"Chen, Wei","last_name":"Chen"},{"full_name":"Chen, Ye","first_name":"Ye","last_name":"Chen"},{"last_name":"Chen","first_name":"Yonghua","full_name":"Chen, Yonghua"},{"full_name":"Chen, Yu","first_name":"Yu","last_name":"Chen"},{"full_name":"Ding, Feng","first_name":"Feng","last_name":"Ding"},{"last_name":"Fan","full_name":"Fan, Chunhai","first_name":"Chunhai"},{"first_name":"Hong Jin","full_name":"Fan, Hong Jin","last_name":"Fan"},{"first_name":"Zhanxi","full_name":"Fan, Zhanxi","last_name":"Fan"},{"first_name":"Cheng","full_name":"Gong, Cheng","last_name":"Gong"},{"first_name":"Yongji","full_name":"Gong, Yongji","last_name":"Gong"},{"last_name":"He","first_name":"Qiyuan","full_name":"He, Qiyuan"},{"last_name":"Hong","first_name":"Xun","full_name":"Hong, Xun"},{"last_name":"Hu","full_name":"Hu, Sheng","first_name":"Sheng"},{"last_name":"Hu","first_name":"Weida","full_name":"Hu, Weida"},{"full_name":"Huang, Wei","first_name":"Wei","last_name":"Huang"},{"last_name":"Huang","first_name":"Yuan","full_name":"Huang, Yuan"},{"last_name":"Ji","full_name":"Ji, Wei","first_name":"Wei"},{"last_name":"Li","full_name":"Li, Dehui","first_name":"Dehui"},{"last_name":"Li","first_name":"Lain Jong","full_name":"Li, Lain Jong"},{"last_name":"Li","first_name":"Qiang","full_name":"Li, Qiang"},{"full_name":"Lin, Li","first_name":"Li","last_name":"Lin"},{"full_name":"Ling, Chongyi","first_name":"Chongyi","last_name":"Ling"},{"last_name":"Liu","first_name":"Minghua","full_name":"Liu, Minghua"},{"last_name":"Liu","first_name":"Nan","full_name":"Liu, Nan"},{"last_name":"Liu","full_name":"Liu, Zhuang","first_name":"Zhuang"},{"last_name":"Loh","full_name":"Loh, Kian Ping","first_name":"Kian Ping"},{"first_name":"Jianmin","full_name":"Ma, Jianmin","last_name":"Ma"},{"first_name":"Feng","full_name":"Miao, Feng","last_name":"Miao"},{"first_name":"Hailin","full_name":"Peng, Hailin","last_name":"Peng"},{"full_name":"Shao, Mingfei","first_name":"Mingfei","last_name":"Shao"},{"last_name":"Song","first_name":"Li","full_name":"Song, Li"},{"last_name":"Su","first_name":"Shao","full_name":"Su, Shao"},{"last_name":"Sun","first_name":"Shuo","full_name":"Sun, Shuo"},{"full_name":"Tan, Chaoliang","first_name":"Chaoliang","last_name":"Tan"},{"last_name":"Tang","first_name":"Zhiyong","full_name":"Tang, Zhiyong"},{"first_name":"Dingsheng","full_name":"Wang, Dingsheng","last_name":"Wang"},{"full_name":"Wang, Huan","first_name":"Huan","last_name":"Wang"},{"first_name":"Jinlan","full_name":"Wang, Jinlan","last_name":"Wang"},{"full_name":"Wang, Xin","first_name":"Xin","last_name":"Wang"},{"full_name":"Wang, Xinran","first_name":"Xinran","last_name":"Wang"},{"last_name":"Wee","full_name":"Wee, Andrew T.S.","first_name":"Andrew T.S."},{"last_name":"Wei","full_name":"Wei, Zhongming","first_name":"Zhongming"},{"last_name":"Wu","full_name":"Wu, Yuen","first_name":"Yuen"},{"first_name":"Zhong Shuai","full_name":"Wu, Zhong Shuai","last_name":"Wu"},{"full_name":"Xiong, Jie","first_name":"Jie","last_name":"Xiong"},{"last_name":"Xiong","full_name":"Xiong, Qihua","first_name":"Qihua"},{"full_name":"Xu, Weigao","first_name":"Weigao","last_name":"Xu"},{"last_name":"Yin","first_name":"Peng","full_name":"Yin, Peng"},{"first_name":"Haibo","full_name":"Zeng, Haibo","last_name":"Zeng"},{"full_name":"Zeng, Zhiyuan","first_name":"Zhiyuan","last_name":"Zeng"},{"last_name":"Zhai","full_name":"Zhai, Tianyou","first_name":"Tianyou"},{"last_name":"Zhang","first_name":"Han","full_name":"Zhang, Han"},{"last_name":"Zhang","first_name":"Hui","full_name":"Zhang, Hui"},{"full_name":"Zhang, Qichun","first_name":"Qichun","last_name":"Zhang"},{"first_name":"Tierui","full_name":"Zhang, Tierui","last_name":"Zhang"},{"first_name":"Xiang","full_name":"Zhang, Xiang","last_name":"Zhang"},{"last_name":"Zhao","full_name":"Zhao, Li Dong","first_name":"Li Dong"},{"full_name":"Zhao, Meiting","first_name":"Meiting","last_name":"Zhao"},{"first_name":"Weijie","full_name":"Zhao, Weijie","last_name":"Zhao"},{"first_name":"Yunxuan","full_name":"Zhao, Yunxuan","last_name":"Zhao"},{"last_name":"Zhou","first_name":"Kai Ge","full_name":"Zhou, Kai Ge"},{"last_name":"Zhou","first_name":"Xing","full_name":"Zhou, Xing"},{"first_name":"Yu","full_name":"Zhou, Yu","last_name":"Zhou"},{"full_name":"Zhu, Hongwei","first_name":"Hongwei","last_name":"Zhu"},{"full_name":"Zhang, Hua","first_name":"Hua","last_name":"Zhang"},{"last_name":"Liu","first_name":"Zhongfan","full_name":"Liu, Zhongfan"}],"type":"journal_article","publication_status":"published","quality_controlled":"1"},{"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2005.02098"}],"arxiv":1,"publisher":"Mathematical Sciences Publishers","publication":"Pure and Applied Analysis","external_id":{"arxiv":["2005.02098"]},"page":"653-676","day":"01","acknowledgement":"Financial support by the European Union’s Horizon 2020 research and innovation programme\r\nunder the Marie Skłodowska-Curie grant agreement No. 754411 (S.R.) and the European\r\nResearch Council under grant agreement No. 694227 (N.L. and R.S.), as well as by the SNSF\r\nEccellenza project PCEFP2 181153 (N.L.), the NCCR SwissMAP (N.L. and B.S.) and by the\r\nDeutsche Forschungsgemeinschaft (DFG) through the Research Training Group 1838: Spectral\r\nTheory and Dynamics of Quantum Systems (D.M.) is gratefully acknowledged. B.S. gratefully\r\nacknowledges financial support from the Swiss National Science Foundation through the Grant\r\n“Dynamical and energetic properties of Bose-Einstein condensates” and from the European\r\nResearch Council through the ERC-AdG CLaQS (grant agreement No 834782). D.M. thanks\r\nMarcel Griesemer for helpful discussions.","fulldoi":"https://doi.org/10.2140/paa.2021.3.653","year":"2021","doi":"10.2140/paa.2021.3.653","project":[{"call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"call_identifier":"H2020","grant_number":"694227","name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"}],"volume":3,"abstract":[{"text":"We consider the Fröhlich Hamiltonian with large coupling constant α. For initial data of Pekar product form with coherent phonon field and with the electron minimizing the corresponding energy, we provide a norm approximation of the evolution, valid up to times of order α2. The approximation is given in terms of a Pekar product state, evolved through the Landau-Pekar equations, corrected by a Bogoliubov dynamics taking quantum fluctuations into account. This allows us to show that the Landau-Pekar equations approximately describe the evolution of the electron- and one-phonon reduced density matrices under the Fröhlich dynamics up to times of order α2.","lang":"eng"}],"ec_funded":1,"intvolume":"         3","title":"Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron","scopus_import":"1","article_type":"original","date_published":"2021-10-01T00:00:00Z","publication_identifier":{"issn":["2578-5893"],"eissn":["2578-5885"]},"corr_author":"1","oa":1,"department":[{"_id":"RoSe"}],"_id":"14889","date_created":"2024-01-28T23:01:43Z","date_updated":"2025-04-14T07:27:00Z","status":"public","language":[{"iso":"eng"}],"issue":"4","publication_status":"published","type":"journal_article","author":[{"orcid":"0000-0002-0495-6822","last_name":"Leopold","id":"4BC40BEC-F248-11E8-B48F-1D18A9856A87","full_name":"Leopold, Nikolai K","first_name":"Nikolai K"},{"id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d","last_name":"Mitrouskas","first_name":"David Johannes","full_name":"Mitrouskas, David Johannes"},{"first_name":"Simone Anna Elvira","full_name":"Rademacher, Simone Anna Elvira","id":"856966FE-A408-11E9-977E-802DE6697425","last_name":"Rademacher","orcid":"0000-0001-5059-4466"},{"last_name":"Schlein","full_name":"Schlein, Benjamin","first_name":"Benjamin"},{"orcid":"0000-0002-6781-0521","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert","first_name":"Robert"}],"quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","oa_version":"Preprint","citation":{"ista":"Leopold NK, Mitrouskas DJ, Rademacher SAE, Schlein B, Seiringer R. 2021. Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron. Pure and Applied Analysis. 3(4), 653–676.","short":"N.K. Leopold, D.J. Mitrouskas, S.A.E. Rademacher, B. Schlein, R. Seiringer, Pure and Applied Analysis 3 (2021) 653–676.","mla":"Leopold, Nikolai K., et al. “Landau–Pekar Equations and Quantum Fluctuations for the Dynamics of a Strongly Coupled Polaron.” <i>Pure and Applied Analysis</i>, vol. 3, no. 4, Mathematical Sciences Publishers, 2021, pp. 653–76, doi:<a href=\"https://doi.org/10.2140/paa.2021.3.653\">10.2140/paa.2021.3.653</a>.","chicago":"Leopold, Nikolai K, David Johannes Mitrouskas, Simone Anna Elvira Rademacher, Benjamin Schlein, and Robert Seiringer. “Landau–Pekar Equations and Quantum Fluctuations for the Dynamics of a Strongly Coupled Polaron.” <i>Pure and Applied Analysis</i>. Mathematical Sciences Publishers, 2021. <a href=\"https://doi.org/10.2140/paa.2021.3.653\">https://doi.org/10.2140/paa.2021.3.653</a>.","ieee":"N. K. Leopold, D. J. Mitrouskas, S. A. E. Rademacher, B. Schlein, and R. Seiringer, “Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron,” <i>Pure and Applied Analysis</i>, vol. 3, no. 4. Mathematical Sciences Publishers, pp. 653–676, 2021.","apa":"Leopold, N. K., Mitrouskas, D. J., Rademacher, S. A. E., Schlein, B., &#38; Seiringer, R. (2021). Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron. <i>Pure and Applied Analysis</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/paa.2021.3.653\">https://doi.org/10.2140/paa.2021.3.653</a>","ama":"Leopold NK, Mitrouskas DJ, Rademacher SAE, Schlein B, Seiringer R. Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron. <i>Pure and Applied Analysis</i>. 2021;3(4):653-676. doi:<a href=\"https://doi.org/10.2140/paa.2021.3.653\">10.2140/paa.2021.3.653</a>"},"month":"10"},{"oa_version":"Preprint","citation":{"chicago":"Bossmann, Lea, Sören P Petrat, Peter Pickl, and Avy Soffer. “Beyond Bogoliubov Dynamics.” <i>Pure and Applied Analysis</i>. Mathematical Sciences Publishers, 2021. <a href=\"https://doi.org/10.2140/paa.2021.3.677\">https://doi.org/10.2140/paa.2021.3.677</a>.","ama":"Bossmann L, Petrat SP, Pickl P, Soffer A. Beyond Bogoliubov dynamics. <i>Pure and Applied Analysis</i>. 2021;3(4):677-726. doi:<a href=\"https://doi.org/10.2140/paa.2021.3.677\">10.2140/paa.2021.3.677</a>","ieee":"L. Bossmann, S. P. Petrat, P. Pickl, and A. Soffer, “Beyond Bogoliubov dynamics,” <i>Pure and Applied Analysis</i>, vol. 3, no. 4. Mathematical Sciences Publishers, pp. 677–726, 2021.","apa":"Bossmann, L., Petrat, S. P., Pickl, P., &#38; Soffer, A. (2021). Beyond Bogoliubov dynamics. <i>Pure and Applied Analysis</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/paa.2021.3.677\">https://doi.org/10.2140/paa.2021.3.677</a>","short":"L. Bossmann, S.P. Petrat, P. Pickl, A. Soffer, Pure and Applied Analysis 3 (2021) 677–726.","ista":"Bossmann L, Petrat SP, Pickl P, Soffer A. 2021. Beyond Bogoliubov dynamics. Pure and Applied Analysis. 3(4), 677–726.","mla":"Bossmann, Lea, et al. “Beyond Bogoliubov Dynamics.” <i>Pure and Applied Analysis</i>, vol. 3, no. 4, Mathematical Sciences Publishers, 2021, pp. 677–726, doi:<a href=\"https://doi.org/10.2140/paa.2021.3.677\">10.2140/paa.2021.3.677</a>."},"month":"10","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","publication_status":"published","author":[{"id":"A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425","last_name":"Bossmann","orcid":"0000-0002-6854-1343","first_name":"Lea","full_name":"Bossmann, Lea"},{"orcid":"0000-0002-9166-5889","last_name":"Petrat","id":"40AC02DC-F248-11E8-B48F-1D18A9856A87","full_name":"Petrat, Sören P","first_name":"Sören P"},{"full_name":"Pickl, Peter","first_name":"Peter","last_name":"Pickl"},{"last_name":"Soffer","full_name":"Soffer, Avy","first_name":"Avy"}],"type":"journal_article","language":[{"iso":"eng"}],"issue":"4","status":"public","date_created":"2024-01-28T23:01:43Z","date_updated":"2025-04-14T07:44:02Z","_id":"14890","corr_author":"1","publication_identifier":{"eissn":["2578-5885"],"issn":["2578-5893"]},"oa":1,"department":[{"_id":"RoSe"}],"date_published":"2021-10-01T00:00:00Z","article_type":"original","title":"Beyond Bogoliubov dynamics","scopus_import":"1","intvolume":"         3","volume":3,"project":[{"grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"}],"ec_funded":1,"abstract":[{"text":"We consider a system of N interacting bosons in the mean-field scaling regime and construct corrections to the Bogoliubov dynamics that approximate the true N-body dynamics in norm to arbitrary precision. The N-independent corrections are given in terms of the solutions of the Bogoliubov and Hartree equations and satisfy a generalized form of Wick's theorem. We determine the n-point correlation functions of the excitations around the condensate, as well as the reduced densities of the N-body system, to arbitrary accuracy, given only the knowledge of the two-point functions of a quasi-free state and the solution of the Hartree equation. In this way, the complex problem of computing all n-point correlation functions for an interacting N-body system is essentially reduced to the problem of solving the Hartree equation and the PDEs for the Bogoliubov two-point functions.","lang":"eng"}],"fulldoi":"https://doi.org/10.2140/paa.2021.3.677","day":"01","acknowledgement":"We are grateful for the hospitality of Central China Normal University (CCNU),\r\nwhere parts of this work were done, and thank Phan Th`anh Nam, Simone\r\nRademacher, Robert Seiringer and Stefan Teufel for helpful discussions. L.B. gratefully acknowledges the support by the German Research Foundation (DFG) within the Research\r\nTraining Group 1838 “Spectral Theory and Dynamics of Quantum Systems”, and the funding\r\nfrom the European Union’s Horizon 2020 research and innovation programme under the Marie\r\nSk lodowska-Curie Grant Agreement No. 754411.","doi":"10.2140/paa.2021.3.677","year":"2021","page":"677-726","publication":"Pure and Applied Analysis","external_id":{"arxiv":["1912.11004"]},"publisher":"Mathematical Sciences Publishers","arxiv":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1912.11004","open_access":"1"}]},{"abstract":[{"lang":"eng","text":"Hybrid zones are narrow geographic regions where different populations, races or interbreeding species meet and mate, producing mixed ‘hybrid’ offspring. They are relatively common and can be found in a diverse range of organisms and environments. The study of hybrid zones has played an important role in our understanding of the origin of species, with hybrid zones having been described as ‘natural laboratories’. This is because they allow us to study,in situ, the conditions and evolutionary forces that enable divergent taxa to remain distinct despite some ongoing gene exchange between them."}],"language":[{"iso":"eng"}],"volume":2,"series_title":"eLS","year":"2021","doi":"10.1002/9780470015902.a0029355","status":"public","fulldoi":"https://doi.org/10.1002/9780470015902.a0029355","day":"28","date_created":"2024-02-14T12:05:50Z","date_updated":"2024-10-09T21:08:11Z","publication":"Encyclopedia of Life Sciences","publisher":"Wiley","_id":"14984","month":"05","oa_version":"None","citation":{"chicago":"Stankowski, Sean, Daria Shipilina, and Anja M Westram. “Hybrid Zones.” In <i>Encyclopedia of Life Sciences</i>, Vol. 2. ELS. Wiley, 2021. <a href=\"https://doi.org/10.1002/9780470015902.a0029355\">https://doi.org/10.1002/9780470015902.a0029355</a>.","ama":"Stankowski S, Shipilina D, Westram AM. Hybrid Zones. In: <i>Encyclopedia of Life Sciences</i>. Vol 2. eLS. Wiley; 2021. doi:<a href=\"https://doi.org/10.1002/9780470015902.a0029355\">10.1002/9780470015902.a0029355</a>","ieee":"S. Stankowski, D. Shipilina, and A. M. Westram, “Hybrid Zones,” in <i>Encyclopedia of Life Sciences</i>, vol. 2, Wiley, 2021.","apa":"Stankowski, S., Shipilina, D., &#38; Westram, A. M. (2021). Hybrid Zones. In <i>Encyclopedia of Life Sciences</i> (Vol. 2). Wiley. <a href=\"https://doi.org/10.1002/9780470015902.a0029355\">https://doi.org/10.1002/9780470015902.a0029355</a>","ista":"Stankowski S, Shipilina D, Westram AM. 2021.Hybrid Zones. In: Encyclopedia of Life Sciences. vol. 2.","short":"S. Stankowski, D. Shipilina, A.M. Westram, in:, Encyclopedia of Life Sciences, Wiley, 2021.","mla":"Stankowski, Sean, et al. “Hybrid Zones.” <i>Encyclopedia of Life Sciences</i>, vol. 2, Wiley, 2021, doi:<a href=\"https://doi.org/10.1002/9780470015902.a0029355\">10.1002/9780470015902.a0029355</a>."},"department":[{"_id":"NiBa"}],"article_processing_charge":"No","corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eisbn":["9780470015902"],"isbn":["9780470016176"]},"quality_controlled":"1","date_published":"2021-05-28T00:00:00Z","author":[{"full_name":"Stankowski, Sean","first_name":"Sean","last_name":"Stankowski","id":"43161670-5719-11EA-8025-FABC3DDC885E"},{"orcid":"0000-0002-1145-9226","id":"428A94B0-F248-11E8-B48F-1D18A9856A87","last_name":"Shipilina","first_name":"Daria","full_name":"Shipilina, Daria"},{"full_name":"Westram, Anja M","first_name":"Anja M","last_name":"Westram","id":"3C147470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1050-4969"}],"title":"Hybrid Zones","type":"book_chapter","intvolume":"         2","publication_status":"published"},{"doi":"10.1007/978-3-030-63416-2_874","year":"2021","fulldoi":"https://doi.org/10.1007/978-3-030-63416-2_874","day":"13","abstract":[{"text":"The goal of zero-shot learning is to construct a classifier that can identify object classes for which no training examples are available. When training data for some of the object classes is available but not for others, the name generalized zero-shot learning is commonly used.\r\nIn a wider sense, the phrase zero-shot is also used to describe other machine learning-based approaches that require no training data from the problem of interest, such as zero-shot action recognition or zero-shot machine translation.","lang":"eng"}],"place":"Cham","page":"1395-1397","publication":"Computer Vision","publisher":"Springer","department":[{"_id":"ChLa"}],"corr_author":"1","editor":[{"last_name":"Ikeuchi","full_name":"Ikeuchi, Katsushi","first_name":"Katsushi"}],"publication_identifier":{"eisbn":["9783030634162"],"isbn":["9783030634155"]},"_id":"14987","title":"Zero-Shot Learning","date_published":"2021-10-13T00:00:00Z","status":"public","language":[{"iso":"eng"}],"date_updated":"2024-10-09T21:08:12Z","date_created":"2024-02-14T14:05:32Z","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"10","edition":"2","oa_version":"None","citation":{"apa":"Lampert, C. (2021). Zero-Shot Learning. In K. Ikeuchi (Ed.), <i>Computer Vision</i> (2nd ed., pp. 1395–1397). Cham: Springer. <a href=\"https://doi.org/10.1007/978-3-030-63416-2_874\">https://doi.org/10.1007/978-3-030-63416-2_874</a>","ieee":"C. Lampert, “Zero-Shot Learning,” in <i>Computer Vision</i>, 2nd ed., K. Ikeuchi, Ed. Cham: Springer, 2021, pp. 1395–1397.","ama":"Lampert C. Zero-Shot Learning. In: Ikeuchi K, ed. <i>Computer Vision</i>. 2nd ed. Cham: Springer; 2021:1395-1397. doi:<a href=\"https://doi.org/10.1007/978-3-030-63416-2_874\">10.1007/978-3-030-63416-2_874</a>","chicago":"Lampert, Christoph. “Zero-Shot Learning.” In <i>Computer Vision</i>, edited by Katsushi Ikeuchi, 2nd ed., 1395–97. Cham: Springer, 2021. <a href=\"https://doi.org/10.1007/978-3-030-63416-2_874\">https://doi.org/10.1007/978-3-030-63416-2_874</a>.","mla":"Lampert, Christoph. “Zero-Shot Learning.” <i>Computer Vision</i>, edited by Katsushi Ikeuchi, 2nd ed., Springer, 2021, pp. 1395–97, doi:<a href=\"https://doi.org/10.1007/978-3-030-63416-2_874\">10.1007/978-3-030-63416-2_874</a>.","short":"C. Lampert, in:, K. Ikeuchi (Ed.), Computer Vision, 2nd ed., Springer, Cham, 2021, pp. 1395–1397.","ista":"Lampert C. 2021.Zero-Shot Learning. In: Computer Vision. , 1395–1397."},"author":[{"id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","last_name":"Lampert","orcid":"0000-0001-8622-7887","first_name":"Christoph","full_name":"Lampert, Christoph"}],"type":"book_chapter","publication_status":"published","quality_controlled":"1"},{"abstract":[{"text":"Raw data generated from the publication - The TPLATE complex mediates membrane bending during plant clathrin-mediated endocytosis by Johnson et al., 2021 In PNAS","lang":"eng"}],"ddc":["580"],"related_material":{"record":[{"id":"9887","relation":"used_in_publication","status":"public"}]},"status":"public","year":"2021","doi":"10.5281/ZENODO.5747100","has_accepted_license":"1","day":"01","fulldoi":"https://doi.org/10.5281/ZENODO.5747100","publisher":"Zenodo","date_created":"2024-02-14T14:13:48Z","date_updated":"2025-05-14T09:25:33Z","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.5747100","open_access":"1"}],"month":"12","_id":"14988","citation":{"apa":"Johnson, A. J. (2021). Raw data from Johnson et al, PNAS, 2021. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.5747100\">https://doi.org/10.5281/ZENODO.5747100</a>","ieee":"A. J. Johnson, “Raw data from Johnson et al, PNAS, 2021.” Zenodo, 2021.","ama":"Johnson AJ. Raw data from Johnson et al, PNAS, 2021. 2021. doi:<a href=\"https://doi.org/10.5281/ZENODO.5747100\">10.5281/ZENODO.5747100</a>","chicago":"Johnson, Alexander J. “Raw Data from Johnson et Al, PNAS, 2021.” Zenodo, 2021. <a href=\"https://doi.org/10.5281/ZENODO.5747100\">https://doi.org/10.5281/ZENODO.5747100</a>.","mla":"Johnson, Alexander J. <i>Raw Data from Johnson et Al, PNAS, 2021</i>. Zenodo, 2021, doi:<a href=\"https://doi.org/10.5281/ZENODO.5747100\">10.5281/ZENODO.5747100</a>.","ista":"Johnson AJ. 2021. Raw data from Johnson et al, PNAS, 2021, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.5747100\">10.5281/ZENODO.5747100</a>.","short":"A.J. Johnson, (2021)."},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa_version":"Published Version","oa":1,"department":[{"_id":"JiFr"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","article_processing_charge":"No","date_published":"2021-12-01T00:00:00Z","type":"research_data_reference","title":"Raw data from Johnson et al, PNAS, 2021","author":[{"id":"46A62C3A-F248-11E8-B48F-1D18A9856A87","last_name":"Johnson","orcid":"0000-0002-2739-8843","first_name":"Alexander J","full_name":"Johnson, Alexander J"}]},{"quality_controlled":"1","publication_status":"published","author":[{"first_name":"Johannes","full_name":"Alt, Johannes","id":"36D3D8B6-F248-11E8-B48F-1D18A9856A87","last_name":"Alt"},{"full_name":"Erdös, László","first_name":"László","orcid":"0000-0001-5366-9603","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Krüger, Torben H","first_name":"Torben H","orcid":"0000-0002-4821-3297","last_name":"Krüger","id":"3020C786-F248-11E8-B48F-1D18A9856A87"}],"type":"journal_article","citation":{"chicago":"Alt, Johannes, László Erdös, and Torben H Krüger. “Spectral Radius of Random Matrices with Independent Entries.” <i>Probability and Mathematical Physics</i>. Mathematical Sciences Publishers, 2021. <a href=\"https://doi.org/10.2140/pmp.2021.2.221\">https://doi.org/10.2140/pmp.2021.2.221</a>.","apa":"Alt, J., Erdös, L., &#38; Krüger, T. H. (2021). Spectral radius of random matrices with independent entries. <i>Probability and Mathematical Physics</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/pmp.2021.2.221\">https://doi.org/10.2140/pmp.2021.2.221</a>","ieee":"J. Alt, L. Erdös, and T. H. Krüger, “Spectral radius of random matrices with independent entries,” <i>Probability and Mathematical Physics</i>, vol. 2, no. 2. Mathematical Sciences Publishers, pp. 221–280, 2021.","ama":"Alt J, Erdös L, Krüger TH. Spectral radius of random matrices with independent entries. <i>Probability and Mathematical Physics</i>. 2021;2(2):221-280. doi:<a href=\"https://doi.org/10.2140/pmp.2021.2.221\">10.2140/pmp.2021.2.221</a>","short":"J. Alt, L. Erdös, T.H. Krüger, Probability and Mathematical Physics 2 (2021) 221–280.","ista":"Alt J, Erdös L, Krüger TH. 2021. Spectral radius of random matrices with independent entries. Probability and Mathematical Physics. 2(2), 221–280.","mla":"Alt, Johannes, et al. “Spectral Radius of Random Matrices with Independent Entries.” <i>Probability and Mathematical Physics</i>, vol. 2, no. 2, Mathematical Sciences Publishers, 2021, pp. 221–80, doi:<a href=\"https://doi.org/10.2140/pmp.2021.2.221\">10.2140/pmp.2021.2.221</a>."},"oa_version":"Preprint","month":"05","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-02-18T23:01:03Z","date_updated":"2025-04-15T08:05:02Z","language":[{"iso":"eng"}],"issue":"2","status":"public","date_published":"2021-05-21T00:00:00Z","article_type":"original","scopus_import":"1","title":"Spectral radius of random matrices with independent entries","intvolume":"         2","_id":"15013","corr_author":"1","publication_identifier":{"eissn":["2690-1005"],"issn":["2690-0998"]},"department":[{"_id":"LaEr"}],"oa":1,"external_id":{"arxiv":["1907.13631"]},"page":"221-280","publication":"Probability and Mathematical Physics","arxiv":1,"publisher":"Mathematical Sciences Publishers","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1907.13631","open_access":"1"}],"volume":2,"project":[{"grant_number":"338804","call_identifier":"FP7","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","name":"Random matrices, universality and disordered quantum systems"}],"abstract":[{"lang":"eng","text":"We consider random n×n matrices X with independent and centered entries and a general variance profile. We show that the spectral radius of X converges with very high probability to the square root of the spectral radius of the variance matrix of X when n tends to infinity. We also establish the optimal rate of convergence, that is a new result even for general i.i.d. matrices beyond the explicitly solvable Gaussian cases. The main ingredient is the proof of the local inhomogeneous circular law [arXiv:1612.07776] at the spectral edge."}],"ec_funded":1,"fulldoi":"https://doi.org/10.2140/pmp.2021.2.221","day":"21","acknowledgement":"Partially supported by ERC Starting Grant RandMat No. 715539 and the SwissMap grant of Swiss National Science Foundation. Partially supported by ERC Advanced Grant RanMat No. 338804. Partially supported by the Hausdorff Center for Mathematics in Bonn.","year":"2021","doi":"10.2140/pmp.2021.2.221"},{"_id":"15254","publication_identifier":{"eissn":["2641-8770"]},"oa":1,"department":[{"_id":"MaMo"}],"article_type":"original","date_published":"2021-12-01T00:00:00Z","intvolume":"         2","scopus_import":"1","title":"Network coding with myopic adversaries","volume":2,"abstract":[{"lang":"eng","text":"We consider the problem of reliable communication over a network containing a hidden myopic adversary who can eavesdrop on some zro links, jam some zwo links, and do both on some zrw links. We provide the first information-theoretically tight characterization of the optimal rate of communication possible under all possible settings of the tuple (zro,zwo,zrw) by providing a novel coding scheme/analysis for a subset of parameter regimes. In particular, our vanishing-error schemes bypass the Network Singleton Bound (which requires a zero-error recovery criteria) in a certain parameter regime where the capacity had been heretofore open. As a direct corollary we also obtain the capacity of the corresponding problem where information-theoretic secrecy against eavesdropping is required in addition to reliable communication."}],"acknowledgement":"The work of Rawad Bitar was supported in part by the Technical University of Munich—Institute for Advanced Studies, funded by the German Excellence Initiative and European Union Seventh Framework Programme under Grant 291763. The work of Sidharth Jaggi was supported by the Hong Kong UGC GRF under Grant 14304418, Grant 14300617, and Grant 14313116. The work of Yihan Zhang was supported by the European Union’s Horizon 2020 Research and Innovation Programme under Grant 682203-ERC-[Inf-Speed-Tradeoff]. Preliminary results were presented at IEEE International Symposium on information Theory (ISIT).","day":"01","fulldoi":"https://doi.org/10.1109/JSAIT.2021.3126474","doi":"10.1109/JSAIT.2021.3126474","year":"2021","publisher":"IEEE","arxiv":1,"publication":"IEEE Journal on Selected Areas in Information Theory","page":"1108-1119","external_id":{"arxiv":["2102.09885"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2102.09885"}],"oa_version":"Preprint","citation":{"apa":"Li, S., Bitar, R., Jaggi, S., &#38; Zhang, Y. (2021). Network coding with myopic adversaries. <i>IEEE Journal on Selected Areas in Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/JSAIT.2021.3126474\">https://doi.org/10.1109/JSAIT.2021.3126474</a>","ieee":"S. Li, R. Bitar, S. Jaggi, and Y. Zhang, “Network coding with myopic adversaries,” <i>IEEE Journal on Selected Areas in Information Theory</i>, vol. 2, no. 4. IEEE, pp. 1108–1119, 2021.","ama":"Li S, Bitar R, Jaggi S, Zhang Y. Network coding with myopic adversaries. <i>IEEE Journal on Selected Areas in Information Theory</i>. 2021;2(4):1108-1119. doi:<a href=\"https://doi.org/10.1109/JSAIT.2021.3126474\">10.1109/JSAIT.2021.3126474</a>","chicago":"Li, Sijie, Rawad Bitar, Sidharth Jaggi, and Yihan Zhang. “Network Coding with Myopic Adversaries.” <i>IEEE Journal on Selected Areas in Information Theory</i>. IEEE, 2021. <a href=\"https://doi.org/10.1109/JSAIT.2021.3126474\">https://doi.org/10.1109/JSAIT.2021.3126474</a>.","mla":"Li, Sijie, et al. “Network Coding with Myopic Adversaries.” <i>IEEE Journal on Selected Areas in Information Theory</i>, vol. 2, no. 4, IEEE, 2021, pp. 1108–19, doi:<a href=\"https://doi.org/10.1109/JSAIT.2021.3126474\">10.1109/JSAIT.2021.3126474</a>.","short":"S. Li, R. Bitar, S. Jaggi, Y. Zhang, IEEE Journal on Selected Areas in Information Theory 2 (2021) 1108–1119.","ista":"Li S, Bitar R, Jaggi S, Zhang Y. 2021. Network coding with myopic adversaries. IEEE Journal on Selected Areas in Information Theory. 2(4), 1108–1119."},"month":"12","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","quality_controlled":"1","publication_status":"published","type":"journal_article","author":[{"last_name":"Li","full_name":"Li, Sijie","first_name":"Sijie"},{"last_name":"Bitar","full_name":"Bitar, Rawad","first_name":"Rawad"},{"full_name":"Jaggi, Sidharth","first_name":"Sidharth","last_name":"Jaggi"},{"orcid":"0000-0002-6465-6258","last_name":"Zhang","id":"2ce5da42-b2ea-11eb-bba5-9f264e9d002c","full_name":"Zhang, Yihan","first_name":"Yihan"}],"language":[{"iso":"eng"}],"issue":"4","status":"public","date_updated":"2024-04-02T08:31:59Z","date_created":"2024-03-31T22:01:13Z"},{"external_id":{"isi":["000681349000008"],"arxiv":["1904.04312"]},"publication":"The Annals of Probability","page":"1886-1916","arxiv":1,"publisher":"Institute of Mathematical Statistics","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1904.04312","open_access":"1"}],"volume":49,"project":[{"call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"abstract":[{"text":"We consider words Gi1⋯Gim involving i.i.d. complex Ginibre matrices and study tracial expressions of their eigenvalues and singular values. We show that the limit distribution of the squared singular values of every word of length m is a Fuss–Catalan distribution with parameter \r\nm+1. This generalizes previous results concerning powers of a complex Ginibre matrix and products of independent Ginibre matrices. In addition, we find other combinatorial parameters of the word that determine the second-order limits of the spectral statistics. For instance, the so-called coperiod of a word characterizes the fluctuations of the eigenvalues. We extend these results to words of general non-Hermitian matrices with i.i.d. entries under moment-matching assumptions, band matrices, and sparse matrices.\r\nThese results rely on the moments method and genus expansion, relating Gaussian matrix integrals to the counting of compact orientable surfaces of a given genus. This allows us to derive a central limit theorem for the trace of any word of complex Ginibre matrices and their conjugate transposes, where all parameters are defined topologically.","lang":"eng"}],"ec_funded":1,"keyword":["Statistics","Probability and Uncertainty","Statistics and Probability"],"fulldoi":"https://doi.org/10.1214/20-aop1496","day":"01","acknowledgement":"The authors would like to thank Gernot Akemann, Benson Au, Paul Bourgade, Jesper Ipsen, Camille Male, Jamie Mingo, Doron Puder, Emily Redelmeier, Roland Speicher, Wojciech Tarnowski and Ofer Zeitouni for useful discussions, comments and references as well as the anonymous referee for a suggestion that greatly improved one of the theorems.\r\nG.D. gratefully acknowledges support from the grants NSF DMS-1812114 of P. Bourgade (PI) and NSF CAREER DMS-1653602 of L.-P. Arguin (PI), as well as the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411.","year":"2021","doi":"10.1214/20-aop1496","date_published":"2021-07-01T00:00:00Z","article_type":"original","title":"On words of non-Hermitian random matrices","scopus_import":"1","intvolume":"        49","_id":"15259","corr_author":"1","publication_identifier":{"issn":["0091-1798"]},"oa":1,"department":[{"_id":"LaEr"}],"date_updated":"2025-09-10T10:13:20Z","date_created":"2024-04-03T07:19:42Z","language":[{"iso":"eng"}],"isi":1,"issue":"4","status":"public","quality_controlled":"1","publication_status":"published","author":[{"full_name":"Dubach, Guillaume","first_name":"Guillaume","orcid":"0000-0001-6892-8137","last_name":"Dubach","id":"D5C6A458-10C4-11EA-ABF4-A4B43DDC885E"},{"last_name":"Peled","first_name":"Yuval","full_name":"Peled, Yuval"}],"type":"journal_article","citation":{"ieee":"G. Dubach and Y. Peled, “On words of non-Hermitian random matrices,” <i>The Annals of Probability</i>, vol. 49, no. 4. Institute of Mathematical Statistics, pp. 1886–1916, 2021.","apa":"Dubach, G., &#38; Peled, Y. (2021). On words of non-Hermitian random matrices. <i>The Annals of Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/20-aop1496\">https://doi.org/10.1214/20-aop1496</a>","ama":"Dubach G, Peled Y. On words of non-Hermitian random matrices. <i>The Annals of Probability</i>. 2021;49(4):1886-1916. doi:<a href=\"https://doi.org/10.1214/20-aop1496\">10.1214/20-aop1496</a>","chicago":"Dubach, Guillaume, and Yuval Peled. “On Words of Non-Hermitian Random Matrices.” <i>The Annals of Probability</i>. Institute of Mathematical Statistics, 2021. <a href=\"https://doi.org/10.1214/20-aop1496\">https://doi.org/10.1214/20-aop1496</a>.","mla":"Dubach, Guillaume, and Yuval Peled. “On Words of Non-Hermitian Random Matrices.” <i>The Annals of Probability</i>, vol. 49, no. 4, Institute of Mathematical Statistics, 2021, pp. 1886–916, doi:<a href=\"https://doi.org/10.1214/20-aop1496\">10.1214/20-aop1496</a>.","ista":"Dubach G, Peled Y. 2021. On words of non-Hermitian random matrices. The Annals of Probability. 49(4), 1886–1916.","short":"G. Dubach, Y. Peled, The Annals of Probability 49 (2021) 1886–1916."},"oa_version":"Preprint","month":"07","article_processing_charge":"No","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"date_created":"2024-04-03T07:23:30Z","date_updated":"2024-04-03T13:50:53Z","status":"public","language":[{"iso":"eng"}],"issue":"24","publication_status":"published","author":[{"last_name":"Cimada daSilva","full_name":"Cimada daSilva, Jessica","first_name":"Jessica"},{"first_name":"Daniel","full_name":"Balazs, Daniel","orcid":"0000-0001-7597-043X","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E","last_name":"Balazs"},{"last_name":"Dunbar","first_name":"Tyler A.","full_name":"Dunbar, Tyler A."},{"last_name":"Hanrath","first_name":"Tobias","full_name":"Hanrath, Tobias"}],"type":"journal_article","quality_controlled":"1","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Submitted Version","citation":{"short":"J. Cimada daSilva, D. Balazs, T.A. Dunbar, T. Hanrath, Chemistry of Materials 33 (2021) 9457–9472.","ista":"Cimada daSilva J, Balazs D, Dunbar TA, Hanrath T. 2021. Fundamental processes and practical considerations of lead chalcogenide mesocrystals formed via self-assembly and directed attachment of nanocrystals at a fluid interface. Chemistry of Materials. 33(24), 9457–9472.","mla":"Cimada daSilva, Jessica, et al. “Fundamental Processes and Practical Considerations of Lead Chalcogenide Mesocrystals Formed via Self-Assembly and Directed Attachment of Nanocrystals at a Fluid Interface.” <i>Chemistry of Materials</i>, vol. 33, no. 24, American Chemical Society, 2021, pp. 9457–72, doi:<a href=\"https://doi.org/10.1021/acs.chemmater.1c02910\">10.1021/acs.chemmater.1c02910</a>.","chicago":"Cimada daSilva, Jessica, Daniel Balazs, Tyler A. Dunbar, and Tobias Hanrath. “Fundamental Processes and Practical Considerations of Lead Chalcogenide Mesocrystals Formed via Self-Assembly and Directed Attachment of Nanocrystals at a Fluid Interface.” <i>Chemistry of Materials</i>. American Chemical Society, 2021. <a href=\"https://doi.org/10.1021/acs.chemmater.1c02910\">https://doi.org/10.1021/acs.chemmater.1c02910</a>.","apa":"Cimada daSilva, J., Balazs, D., Dunbar, T. A., &#38; Hanrath, T. (2021). Fundamental processes and practical considerations of lead chalcogenide mesocrystals formed via self-assembly and directed attachment of nanocrystals at a fluid interface. <i>Chemistry of Materials</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.chemmater.1c02910\">https://doi.org/10.1021/acs.chemmater.1c02910</a>","ieee":"J. Cimada daSilva, D. Balazs, T. A. Dunbar, and T. Hanrath, “Fundamental processes and practical considerations of lead chalcogenide mesocrystals formed via self-assembly and directed attachment of nanocrystals at a fluid interface,” <i>Chemistry of Materials</i>, vol. 33, no. 24. American Chemical Society, pp. 9457–9472, 2021.","ama":"Cimada daSilva J, Balazs D, Dunbar TA, Hanrath T. Fundamental processes and practical considerations of lead chalcogenide mesocrystals formed via self-assembly and directed attachment of nanocrystals at a fluid interface. <i>Chemistry of Materials</i>. 2021;33(24):9457-9472. doi:<a href=\"https://doi.org/10.1021/acs.chemmater.1c02910\">10.1021/acs.chemmater.1c02910</a>"},"month":"12","main_file_link":[{"open_access":"1","url":"https://www.osti.gov/servlets/purl/1836502"}],"publication":"Chemistry of Materials","page":"9457-9472","publisher":"American Chemical Society","keyword":["Materials Chemistry","General Chemical Engineering","General Chemistry"],"fulldoi":"https://doi.org/10.1021/acs.chemmater.1c02910","day":"16","doi":"10.1021/acs.chemmater.1c02910","year":"2021","volume":33,"abstract":[{"lang":"eng","text":"Significant advances in the synthesis and processing of colloidal nanocrystals have given scientists and engineers access to a vast library of building blocks with precisely defined size, shape, and composition. These materials have inspired exciting prospects to enable bottom-up fabrication of programmable materials with properties by design. Successfully assembling and connecting the building blocks into superstructures in which constituent nanocrystals can purposefully interact requires robust understanding of and control over a complex interplay of dynamic physicochemical processes. Fluid interfaces provide an advantageous experimental workbench to both probe and control these processes. Despite the ostensible simplicity of fabricating nanocrystal assemblies at a fluid interface, sensitivity to processing conditions and limited reproducibility have underscored the complexity of this process. In situ studies have provided mechanistic insights into the competing dynamics of key subprocesses including solvent spreading and evaporation, superlattice formation, ligand detachment kinetics, and nanocrystal attachment. Understanding how these subprocesses influence the complex choreography of self-assembly, structure transformation, and oriented attachment processes presents a rich research challenge. In this context, we present a detailed methodology for self-assembly and attachment of lead chalcogenide nanocrystals at a liquid–gas interface as a model system for the fabrication of mono- and multilayer cubic connected superlattices. We discuss key experimental parameters such as the characteristics of the building blocks and processing conditions and detailed steps from colloidal nanocrystal injection to superlattice transfer. We hope that this Methods/Protocols paper will provide guidance for future advances in the exciting path toward bringing the prospect of nanocrystal-based programmable materials to fruition."}],"scopus_import":"1","title":"Fundamental processes and practical considerations of lead chalcogenide mesocrystals formed via self-assembly and directed attachment of nanocrystals at a fluid interface","intvolume":"        33","date_published":"2021-12-16T00:00:00Z","article_type":"original","publication_identifier":{"eissn":["1520-5002"],"issn":["0897-4756"]},"oa":1,"department":[{"_id":"LifeSc"}],"_id":"15260"},{"oa":1,"department":[{"_id":"JaMa"}],"publication_identifier":{"issn":["0022-1236"],"eissn":["1096-0783"]},"corr_author":"1","_id":"15261","intvolume":"       280","article_number":"108848","scopus_import":"1","title":"Uniqueness of form extensions and domination of semigroups","article_type":"original","date_published":"2021-03-15T00:00:00Z","year":"2021","doi":"10.1016/j.jfa.2020.108848","day":"15","OA_type":"free access","fulldoi":"https://doi.org/10.1016/j.jfa.2020.108848","keyword":["Analysis"],"abstract":[{"lang":"eng","text":"In this article, we study uniqueness of form extensions in a rather general setting. The method is based on the theory of ordered Hilbert spaces and the concept of domination of semigroups. Our main abstract result transfers uniqueness of form extension of a dominating form to that of a dominated form. This result can be applied to a multitude of examples including various magnetic Schrödinger forms on graphs and on manifolds."}],"volume":280,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.jfa.2020.108848"}],"publisher":"Elsevier","publication":"Journal of Functional Analysis","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","month":"03","citation":{"ieee":"D. Lenz, M. Schmidt, and M. Wirth, “Uniqueness of form extensions and domination of semigroups,” <i>Journal of Functional Analysis</i>, vol. 280, no. 6. Elsevier, 2021.","apa":"Lenz, D., Schmidt, M., &#38; Wirth, M. (2021). Uniqueness of form extensions and domination of semigroups. <i>Journal of Functional Analysis</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jfa.2020.108848\">https://doi.org/10.1016/j.jfa.2020.108848</a>","ama":"Lenz D, Schmidt M, Wirth M. Uniqueness of form extensions and domination of semigroups. <i>Journal of Functional Analysis</i>. 2021;280(6). doi:<a href=\"https://doi.org/10.1016/j.jfa.2020.108848\">10.1016/j.jfa.2020.108848</a>","chicago":"Lenz, Daniel, Marcel Schmidt, and Melchior Wirth. “Uniqueness of Form Extensions and Domination of Semigroups.” <i>Journal of Functional Analysis</i>. Elsevier, 2021. <a href=\"https://doi.org/10.1016/j.jfa.2020.108848\">https://doi.org/10.1016/j.jfa.2020.108848</a>.","mla":"Lenz, Daniel, et al. “Uniqueness of Form Extensions and Domination of Semigroups.” <i>Journal of Functional Analysis</i>, vol. 280, no. 6, 108848, Elsevier, 2021, doi:<a href=\"https://doi.org/10.1016/j.jfa.2020.108848\">10.1016/j.jfa.2020.108848</a>.","short":"D. Lenz, M. Schmidt, M. Wirth, Journal of Functional Analysis 280 (2021).","ista":"Lenz D, Schmidt M, Wirth M. 2021. Uniqueness of form extensions and domination of semigroups. Journal of Functional Analysis. 280(6), 108848."},"oa_version":"Published Version","type":"journal_article","author":[{"full_name":"Lenz, Daniel","first_name":"Daniel","last_name":"Lenz"},{"full_name":"Schmidt, Marcel","first_name":"Marcel","last_name":"Schmidt"},{"full_name":"Wirth, Melchior","first_name":"Melchior","orcid":"0000-0002-0519-4241","last_name":"Wirth","id":"88644358-0A0E-11EA-8FA5-49A33DDC885E"}],"publication_status":"published","quality_controlled":"1","status":"public","issue":"6","OA_place":"publisher","language":[{"iso":"eng"}],"ddc":["500"],"date_created":"2024-04-03T07:24:57Z","date_updated":"2026-06-18T17:46:54Z"},{"date_updated":"2026-06-18T17:47:19Z","date_created":"2024-04-03T07:29:49Z","status":"public","language":[{"iso":"eng"}],"ddc":["000"],"publication_status":"published","alternative_title":["PMLR"],"author":[{"last_name":"Alimisis","id":"19430a34-05f6-11ef-890d-c079cfc60ae2","full_name":"Alimisis, Foivos","first_name":"Foivos"},{"first_name":"Antonio","full_name":"Orvieto, Antonio","last_name":"Orvieto"},{"last_name":"Becigneul","first_name":"Gary","full_name":"Becigneul, Gary"},{"last_name":"Lucchi","first_name":"Aurelien","full_name":"Lucchi, Aurelien"}],"type":"conference","quality_controlled":"1","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"name":"AISTATS: Conference on Artificial Intelligence and Statistics","start_date":"2021-04-13","end_date":"2021-04-15","location":"San Diego, CA, United States; Virtual"},"citation":{"short":"F. Alimisis, A. Orvieto, G. Becigneul, A. Lucchi, in:, Proceedings of the 24th International Conference on Artificial Intelligence and Statistics, ML Research Press, 2021, pp. 1351–1359.","ista":"Alimisis F, Orvieto A, Becigneul G, Lucchi A. 2021. Momentum improves optimization on Riemannian manifolds. Proceedings of the 24th International Conference on Artificial Intelligence and Statistics. AISTATS: Conference on Artificial Intelligence and Statistics, PMLR, vol. 130, 1351–1359.","mla":"Alimisis, Foivos, et al. “Momentum Improves Optimization on Riemannian Manifolds.” <i>Proceedings of the 24th International Conference on Artificial Intelligence and Statistics</i>, vol. 130, ML Research Press, 2021, pp. 1351–59.","chicago":"Alimisis, Foivos, Antonio Orvieto, Gary Becigneul, and Aurelien Lucchi. “Momentum Improves Optimization on Riemannian Manifolds.” In <i>Proceedings of the 24th International Conference on Artificial Intelligence and Statistics</i>, 130:1351–59. ML Research Press, 2021.","ama":"Alimisis F, Orvieto A, Becigneul G, Lucchi A. Momentum improves optimization on Riemannian manifolds. In: <i>Proceedings of the 24th International Conference on Artificial Intelligence and Statistics</i>. Vol 130. ML Research Press; 2021:1351-1359.","ieee":"F. Alimisis, A. Orvieto, G. Becigneul, and A. Lucchi, “Momentum improves optimization on Riemannian manifolds,” in <i>Proceedings of the 24th International Conference on Artificial Intelligence and Statistics</i>, San Diego, CA, United States; Virtual, 2021, vol. 130, pp. 1351–1359.","apa":"Alimisis, F., Orvieto, A., Becigneul, G., &#38; Lucchi, A. (2021). Momentum improves optimization on Riemannian manifolds. In <i>Proceedings of the 24th International Conference on Artificial Intelligence and Statistics</i> (Vol. 130, pp. 1351–1359). San Diego, CA, United States; Virtual: ML Research Press."},"oa_version":"Published Version","month":"04","main_file_link":[{"open_access":"1","url":"https://proceedings.mlr.press/v130/alimisis21a.html"}],"publication":"Proceedings of the 24th International Conference on Artificial Intelligence and Statistics","external_id":{"arxiv":["2002.04144"]},"page":"1351-1359","arxiv":1,"publisher":"ML Research Press","acknowledgement":"The authors would like to thank professors Nicolas Boumal and Suvrit Sra for helpful discussions on the content of this paper. Gary Bécigneul was funded by the Max Planck ETH Center for Learning Systems during the course of this work.","day":"15","year":"2021","volume":130,"abstract":[{"text":"We develop a new Riemannian descent algorithm that relies on momentum to improve over existing first-order methods for geodesically convex optimization. In contrast, accelerated convergence rates proved in prior work have only been shown to hold for geodesically strongly-convex objective functions. We further extend our algorithm to geodesically weakly-quasi-convex objectives. Our proofs of convergence rely on a novel estimate sequence that illustrates the dependency of the convergence rate on the curvature of the manifold. We validate our theoretical results empirically on several optimization problems defined on the sphere and on the manifold of positive definite matrices.","lang":"eng"}],"title":"Momentum improves optimization on Riemannian manifolds","intvolume":"       130","date_published":"2021-04-15T00:00:00Z","oa":1,"department":[{"_id":"DaAl"}],"_id":"15263"},{"date_updated":"2024-04-03T14:10:25Z","date_created":"2024-04-03T07:34:08Z","file":[{"file_id":"15291","access_level":"open_access","file_size":7430029,"date_created":"2024-04-03T14:08:05Z","date_updated":"2024-04-03T14:08:05Z","relation":"main_file","success":1,"creator":"dernst","file_name":"2021_Frontiers_Deretic.pdf","checksum":"f6330b5c6718d6780383c0300fd4ef12","content_type":"application/pdf"}],"language":[{"iso":"eng"}],"ddc":["570"],"has_accepted_license":"1","status":"public","file_date_updated":"2024-04-03T14:08:05Z","quality_controlled":"1","publication_status":"published","author":[{"last_name":"Deretic","first_name":"Nikola","full_name":"Deretic, Nikola"},{"full_name":"Bolger-Munro, Madison","first_name":"Madison","last_name":"Bolger-Munro","id":"516F03FA-93A3-11EA-A7C5-D6BE3DDC885E","orcid":"0000-0002-8176-4824"},{"full_name":"Choi, Kate","first_name":"Kate","last_name":"Choi"},{"full_name":"Abraham, Libin","first_name":"Libin","last_name":"Abraham"},{"last_name":"Gold","full_name":"Gold, Michael R.","first_name":"Michael R."}],"type":"journal_article","citation":{"chicago":"Deretic, Nikola, Madison Bolger-Munro, Kate Choi, Libin Abraham, and Michael R. Gold. “The Actin-Disassembly Protein Glia Maturation Factor γ Enhances Actin Remodeling and B Cell Antigen Receptor Signaling at the Immune Synapse.” <i>Frontiers in Cell and Developmental Biology</i>. Frontiers Media, 2021. <a href=\"https://doi.org/10.3389/fcell.2021.647063\">https://doi.org/10.3389/fcell.2021.647063</a>.","ama":"Deretic N, Bolger-Munro M, Choi K, Abraham L, Gold MR. The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse. <i>Frontiers in Cell and Developmental Biology</i>. 2021;9. doi:<a href=\"https://doi.org/10.3389/fcell.2021.647063\">10.3389/fcell.2021.647063</a>","ieee":"N. Deretic, M. Bolger-Munro, K. Choi, L. Abraham, and M. R. Gold, “The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse,” <i>Frontiers in Cell and Developmental Biology</i>, vol. 9. Frontiers Media, 2021.","apa":"Deretic, N., Bolger-Munro, M., Choi, K., Abraham, L., &#38; Gold, M. R. (2021). The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse. <i>Frontiers in Cell and Developmental Biology</i>. Frontiers Media. <a href=\"https://doi.org/10.3389/fcell.2021.647063\">https://doi.org/10.3389/fcell.2021.647063</a>","ista":"Deretic N, Bolger-Munro M, Choi K, Abraham L, Gold MR. 2021. The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse. Frontiers in Cell and Developmental Biology. 9, 647063.","short":"N. Deretic, M. Bolger-Munro, K. Choi, L. Abraham, M.R. Gold, Frontiers in Cell and Developmental Biology 9 (2021).","mla":"Deretic, Nikola, et al. “The Actin-Disassembly Protein Glia Maturation Factor γ Enhances Actin Remodeling and B Cell Antigen Receptor Signaling at the Immune Synapse.” <i>Frontiers in Cell and Developmental Biology</i>, vol. 9, 647063, Frontiers Media, 2021, doi:<a href=\"https://doi.org/10.3389/fcell.2021.647063\">10.3389/fcell.2021.647063</a>."},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa_version":"Published Version","month":"07","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"pmid":["34336818"]},"publication":"Frontiers in Cell and Developmental Biology","publisher":"Frontiers Media","pmid":1,"volume":9,"abstract":[{"lang":"eng","text":"Signaling by the B cell antigen receptor (BCR) initiates actin remodeling. The assembly of branched actin networks that are nucleated by the Arp2/3 complex exert outward force on the plasma membrane, allowing B cells to form membrane protrusions that can scan the surface of antigen-presenting cells (APCs). The resulting Arp2/3 complex-dependent actin retrograde flow promotes the centripetal movement and progressive coalescence of BCR microclusters, which amplifies BCR signaling. Glia maturation factor γ (GMFγ) is an actin disassembly-protein that releases Arp2/3 complex-nucleated actin filaments from actin networks. By doing so, GMFγ could either oppose the actions of the Arp2/3 complex or support Arp2/3 complex-nucleated actin polymerization by contributing to the recycling of actin monomers and Arp2/3 complexes. We now show that reducing the levels of GMFγ in human B cell lines via transfection with a specific siRNA impairs the ability of B cells to spread on antigen-coated surfaces, decreases the velocity of actin retrograde flow, diminishes the coalescence of BCR microclusters into a central cluster at the B cell-APC contact site, and decreases APC-induced BCR signaling. These effects of depleting GMFγ are similar to what occurs when the Arp2/3 complex is inhibited. This suggests that GMFγ cooperates with the Arp2/3 complex to support BCR-induced actin remodeling and amplify BCR signaling at the immune synapse."}],"fulldoi":"https://doi.org/10.3389/fcell.2021.647063","keyword":["Cell Biology","Developmental Biology"],"day":"01","year":"2021","doi":"10.3389/fcell.2021.647063","date_published":"2021-07-01T00:00:00Z","article_type":"original","scopus_import":"1","title":"The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse","intvolume":"         9","article_number":"647063","_id":"15264","publication_identifier":{"issn":["2296-634X"]},"oa":1,"department":[{"_id":"CaHe"}]},{"date_updated":"2024-04-29T06:56:57Z","date_created":"2024-04-03T07:36:10Z","issue":"8","language":[{"iso":"eng"}],"status":"public","quality_controlled":"1","author":[{"first_name":"Tanmoy","full_name":"Ghosh, Tanmoy","id":"a5fc9bc3-feff-11ea-93fe-e8015a3c7e9d","last_name":"Ghosh"},{"full_name":"Roychowdhury, Subhajit","first_name":"Subhajit","last_name":"Roychowdhury"},{"first_name":"Moinak","full_name":"Dutta, Moinak","last_name":"Dutta"},{"last_name":"Biswas","first_name":"Kanishka","full_name":"Biswas, Kanishka"}],"type":"journal_article","publication_status":"published","month":"07","citation":{"chicago":"Ghosh, Tanmoy, Subhajit Roychowdhury, Moinak Dutta, and Kanishka Biswas. “High-Performance Thermoelectric Energy Conversion: A Tale of Atomic Ordering in AgSbTe2.” <i>ACS Energy Letters</i>. American Chemical Society, 2021. <a href=\"https://doi.org/10.1021/acsenergylett.1c01184\">https://doi.org/10.1021/acsenergylett.1c01184</a>.","ama":"Ghosh T, Roychowdhury S, Dutta M, Biswas K. High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2. <i>ACS Energy Letters</i>. 2021;6(8):2825-2837. doi:<a href=\"https://doi.org/10.1021/acsenergylett.1c01184\">10.1021/acsenergylett.1c01184</a>","ieee":"T. Ghosh, S. Roychowdhury, M. Dutta, and K. Biswas, “High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2,” <i>ACS Energy Letters</i>, vol. 6, no. 8. American Chemical Society, pp. 2825–2837, 2021.","apa":"Ghosh, T., Roychowdhury, S., Dutta, M., &#38; Biswas, K. (2021). High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2. <i>ACS Energy Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsenergylett.1c01184\">https://doi.org/10.1021/acsenergylett.1c01184</a>","short":"T. Ghosh, S. Roychowdhury, M. Dutta, K. Biswas, ACS Energy Letters 6 (2021) 2825–2837.","ista":"Ghosh T, Roychowdhury S, Dutta M, Biswas K. 2021. High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2. ACS Energy Letters. 6(8), 2825–2837.","mla":"Ghosh, Tanmoy, et al. “High-Performance Thermoelectric Energy Conversion: A Tale of Atomic Ordering in AgSbTe2.” <i>ACS Energy Letters</i>, vol. 6, no. 8, American Chemical Society, 2021, pp. 2825–37, doi:<a href=\"https://doi.org/10.1021/acsenergylett.1c01184\">10.1021/acsenergylett.1c01184</a>."},"oa_version":"None","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"ACS Energy Letters","page":"2825-2837","publisher":"American Chemical Society","abstract":[{"lang":"eng","text":"The highly enhanced thermoelectric figure of merit, zT ≈ 2.6 at 573 K, obtained recently in Cd-doped polycrystalline AgSbTe2 by Roychowdhury et al. ( Science 2021, 371, 722) brings it to the forefront of thermoelectric and energy materials research. Ag/Sb cationic ordering in polycrystalline AgSbTe2 was a challenging issue for a long time: their ordered arrangement in the cationic sublattice in polycrystalline samples remained elusive despite multiple theoretical predictions and experimental studies. Recently, selective cation doping has been used to enhance the Ag/Sb ordering, and cation ordered nanoscale (2–4 nm) domains were observed in polycrystalline AgSbTe2, which reduce lattice thermal conductivity. The enhanced cation ordering also delocalizes disorder-induced localized electronic states, and consequently the electronic transport enhances. In this Focus Review, we provide the details of the rational design of a high-performance thermoelectric material using the recently developed atomic order–disorder optimization strategy with AgSbTe2 as an example. Atomic disorder is ubiquitous in most thermoelectric materials, and the atomic order–disorder optimization strategy applies to a large variety of thermoelectric materials."}],"volume":6,"doi":"10.1021/acsenergylett.1c01184","year":"2021","keyword":["Materials Chemistry","Energy Engineering and Power Technology","Fuel Technology","Renewable Energy","Sustainability and the Environment","Chemistry (miscellaneous)"],"fulldoi":"https://doi.org/10.1021/acsenergylett.1c01184","day":"21","date_published":"2021-07-21T00:00:00Z","article_type":"original","title":"High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2","intvolume":"         6","_id":"15265","department":[{"_id":"MaIb"}],"publication_identifier":{"issn":["2380-8195"]}},{"date_created":"2024-04-03T07:38:14Z","date_updated":"2024-04-29T06:53:15Z","file":[{"file_size":4738995,"access_level":"open_access","file_id":"15349","checksum":"25b7b329435af57db2c95571a8ef32fe","content_type":"application/pdf","date_updated":"2024-04-29T06:51:59Z","date_created":"2024-04-29T06:51:59Z","relation":"main_file","file_name":"2021_PlosOne_Overdijk.pdf","creator":"dernst","success":1}],"issue":"4","ddc":["580"],"language":[{"iso":"eng"}],"has_accepted_license":"1","status":"public","quality_controlled":"1","file_date_updated":"2024-04-29T06:51:59Z","author":[{"first_name":"Elysa J. R.","full_name":"Overdijk, Elysa J. R.","last_name":"Overdijk"},{"full_name":"Putker, Vera","first_name":"Vera","last_name":"Putker"},{"last_name":"Smits","first_name":"Joep","full_name":"Smits, Joep"},{"orcid":"0000-0001-6152-6637","last_name":"Tang","id":"19BDF720-25A0-11EA-AC6E-928F3DDC885E","full_name":"Tang, Han","first_name":"Han"},{"full_name":"Bouwmeester, Klaas","first_name":"Klaas","last_name":"Bouwmeester"},{"last_name":"Govers","full_name":"Govers, Francine","first_name":"Francine"},{"first_name":"Tijs","full_name":"Ketelaar, Tijs","last_name":"Ketelaar"}],"type":"journal_article","publication_status":"published","month":"04","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa_version":"Published Version","citation":{"ista":"Overdijk EJR, Putker V, Smits J, Tang H, Bouwmeester K, Govers F, Ketelaar T. 2021. Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization. PLoS One. 16(4), e0249637.","short":"E.J.R. Overdijk, V. Putker, J. Smits, H. Tang, K. Bouwmeester, F. Govers, T. Ketelaar, PLoS One 16 (2021).","mla":"Overdijk, Elysa J. R., et al. “Phytophthora Infestans RXLR Effector AVR1 Disturbs the Growth of Physcomitrium Patens without Affecting Sec5 Localization.” <i>PLoS One</i>, vol. 16, no. 4, e0249637, Public Library of Science, 2021, doi:<a href=\"https://doi.org/10.1371/journal.pone.0249637\">10.1371/journal.pone.0249637</a>.","chicago":"Overdijk, Elysa J. R., Vera Putker, Joep Smits, Han Tang, Klaas Bouwmeester, Francine Govers, and Tijs Ketelaar. “Phytophthora Infestans RXLR Effector AVR1 Disturbs the Growth of Physcomitrium Patens without Affecting Sec5 Localization.” <i>PLoS One</i>. Public Library of Science, 2021. <a href=\"https://doi.org/10.1371/journal.pone.0249637\">https://doi.org/10.1371/journal.pone.0249637</a>.","ama":"Overdijk EJR, Putker V, Smits J, et al. Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization. <i>PLoS One</i>. 2021;16(4). doi:<a href=\"https://doi.org/10.1371/journal.pone.0249637\">10.1371/journal.pone.0249637</a>","apa":"Overdijk, E. J. R., Putker, V., Smits, J., Tang, H., Bouwmeester, K., Govers, F., &#38; Ketelaar, T. (2021). Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0249637\">https://doi.org/10.1371/journal.pone.0249637</a>","ieee":"E. J. R. Overdijk <i>et al.</i>, “Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization,” <i>PLoS One</i>, vol. 16, no. 4. Public Library of Science, 2021."},"article_processing_charge":"Yes","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"external_id":{"pmid":["33831039"]},"publication":"PLoS One","publisher":"Public Library of Science","abstract":[{"lang":"eng","text":"Plant pathogens often exploit a whole range of effectors to facilitate infection. The RXLR effector AVR1 produced by the oomycete plant pathogen Phytophthora infestans suppresses host defense by targeting Sec5. Sec5 is a subunit of the exocyst, a protein complex that is important for mediating polarized exocytosis during plant development and defense against pathogens. The mechanism by which AVR1 manipulates Sec5 functioning is unknown. In this study, we analyzed the effect of AVR1 on Sec5 localization and functioning in the moss Physcomitrium patens. P. patens has four Sec5 homologs. Two (PpSec5b and PpSec5d) were found to interact with AVR1 in yeast-two-hybrid assays while none of the four showed a positive interaction with AVR1ΔT, a truncated version of AVR1. In P. patens lines carrying β-estradiol inducible AVR1 or AVR1ΔT transgenes, expression of AVR1 or AVR1ΔT caused defects in the development of caulonemal protonema cells and abnormal morphology of chloronema cells. Similar phenotypes were observed in Sec5- or Sec6-silenced P. patens lines, suggesting that both AVR1 and AVR1ΔT affect exocyst functioning in P. patens. With respect to Sec5 localization we found no differences between β-estradiol-treated and untreated transgenic AVR1 lines. Sec5 localizes at the plasma membrane in growing caulonema cells, also during pathogen attack, and its subcellular localization is the same, with or without AVR1 in the vicinity."}],"volume":16,"year":"2021","doi":"10.1371/journal.pone.0249637","keyword":["Multidisciplinary"],"fulldoi":"https://doi.org/10.1371/journal.pone.0249637","day":"08","date_published":"2021-04-08T00:00:00Z","article_type":"original","title":"Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization","intvolume":"        16","article_number":"e0249637","_id":"15266","department":[{"_id":"JiFr"}],"oa":1,"publication_identifier":{"issn":["1932-6203"]}},{"_id":"15269","publication_identifier":{"issn":["1029-8479"]},"corr_author":"1","department":[{"_id":"MaSe"}],"oa":1,"article_type":"original","date_published":"2021-03-08T00:00:00Z","article_number":"79","intvolume":"      2021","title":"Aspects of quantum information in finite density field theory","scopus_import":"1","volume":2021,"abstract":[{"lang":"eng","text":"We study different aspects of quantum field theory at finite density using methods from quantum information theory. For simplicity we focus on massive Dirac fermions with nonzero chemical potential, and work in 1 + 1 space-time dimensions. Using the entanglement entropy on an interval, we construct an entropic <jats:italic>c</jats:italic>-function that is finite. Unlike what happens in Lorentz-invariant theories, this <jats:italic>c</jats:italic>-function exhibits a strong violation of monotonicity; it also encodes the creation of long-range entanglement from the Fermi surface. Motivated by previous works on lattice models, we next calculate numerically the Renyi entropies and find Friedel-type oscillations; these are understood in terms of a defect operator product expansion. Furthermore, we consider the mutual information as a measure of correlation functions between different regions. Using a long-distance expansion previously developed by Cardy, we argue that the mutual information detects Fermi surface correlations already at leading order in the expansion. We also analyze the relative entropy and its Renyi generalizations in order to distinguish states with different charge and/or mass. In particular, we show that states in different superselection sectors give rise to a super-extensive behavior in the relative entropy. Finally, we discuss possible extensions to interacting theories, and argue for the relevance of some of these measures for probing non-Fermi liquids."}],"day":"08","acknowledgement":"We thank H. Casini for many interesting discussions and comments on the manuscript.\r\nLD is supported by CNEA and UNCuyo, Inst. Balseiro. RM is supported by IST Austria.\r\nMS is supported by CONICET and UNCuyo, Inst. Balseiro. GT is supported by CONICET\r\n(PIP grant 11220150100299), ANPCyT (PICT 2018-2517), CNEA, and UNCuyo,\r\nInst. Balseiro.","fulldoi":"https://doi.org/10.1007/jhep03(2021)079","keyword":["Nuclear and High Energy Physics"],"doi":"10.1007/jhep03(2021)079","year":"2021","publisher":"Springer Nature","arxiv":1,"publication":"Journal of High Energy Physics","external_id":{"arxiv":["2011.01252"],"isi":["000627376600004"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa_version":"Published Version","citation":{"ieee":"L. Daguerre, R. A. Medina Ramos, M. Solís, and G. Torroba, “Aspects of quantum information in finite density field theory,” <i>Journal of High Energy Physics</i>, vol. 2021, no. 3. Springer Nature, 2021.","apa":"Daguerre, L., Medina Ramos, R. A., Solís, M., &#38; Torroba, G. (2021). Aspects of quantum information in finite density field theory. <i>Journal of High Energy Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/jhep03(2021)079\">https://doi.org/10.1007/jhep03(2021)079</a>","ama":"Daguerre L, Medina Ramos RA, Solís M, Torroba G. Aspects of quantum information in finite density field theory. <i>Journal of High Energy Physics</i>. 2021;2021(3). doi:<a href=\"https://doi.org/10.1007/jhep03(2021)079\">10.1007/jhep03(2021)079</a>","chicago":"Daguerre, Lucas, Raimel A Medina Ramos, Mario Solís, and Gonzalo Torroba. “Aspects of Quantum Information in Finite Density Field Theory.” <i>Journal of High Energy Physics</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/jhep03(2021)079\">https://doi.org/10.1007/jhep03(2021)079</a>.","mla":"Daguerre, Lucas, et al. “Aspects of Quantum Information in Finite Density Field Theory.” <i>Journal of High Energy Physics</i>, vol. 2021, no. 3, 79, Springer Nature, 2021, doi:<a href=\"https://doi.org/10.1007/jhep03(2021)079\">10.1007/jhep03(2021)079</a>.","short":"L. Daguerre, R.A. Medina Ramos, M. Solís, G. Torroba, Journal of High Energy Physics 2021 (2021).","ista":"Daguerre L, Medina Ramos RA, Solís M, Torroba G. 2021. Aspects of quantum information in finite density field theory. Journal of High Energy Physics. 2021(3), 79."},"month":"03","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_processing_charge":"Yes","file_date_updated":"2024-04-10T09:18:38Z","quality_controlled":"1","publication_status":"published","type":"journal_article","author":[{"first_name":"Lucas","full_name":"Daguerre, Lucas","last_name":"Daguerre"},{"first_name":"Raimel A","full_name":"Medina Ramos, Raimel A","orcid":"0000-0002-5383-2869","id":"CE680B90-D85A-11E9-B684-C920E6697425","last_name":"Medina Ramos"},{"first_name":"Mario","full_name":"Solís, Mario","last_name":"Solís"},{"first_name":"Gonzalo","full_name":"Torroba, Gonzalo","last_name":"Torroba"}],"ddc":["530"],"language":[{"iso":"eng"}],"issue":"3","isi":1,"status":"public","has_accepted_license":"1","date_updated":"2025-09-10T10:15:02Z","date_created":"2024-04-03T07:51:06Z","file":[{"access_level":"open_access","file_size":5389195,"file_id":"15310","content_type":"application/pdf","checksum":"4f540e63988ee87173e02f51a19a6672","success":1,"creator":"dernst","file_name":"2021_JourHighEnergyPhysics_Daguerre.pdf","date_updated":"2024-04-10T09:18:38Z","relation":"main_file","date_created":"2024-04-10T09:18:38Z"}]},{"pmid":1,"external_id":{"pmid":["34253054"]},"publication":"mBio","publisher":"American Society for Microbiology","year":"2021","doi":"10.1128/mbio.00676-21","keyword":["Virology","Microbiology"],"fulldoi":"https://doi.org/10.1128/mbio.00676-21","day":"31","abstract":[{"text":"Various toxic compounds disrupt bacterial physiology. While bacteria harbor defense mechanisms to mitigate the toxicity, these mechanisms are often coupled to the physiological state of the cells and become ineffective when the physiology is severely disrupted.","lang":"eng"}],"volume":12,"title":"Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria","article_number":"676","intvolume":"        12","date_published":"2021-08-31T00:00:00Z","article_type":"original","oa":1,"department":[{"_id":"CaGu"}],"publication_identifier":{"issn":["2150-7511"]},"_id":"15270","file":[{"date_created":"2024-04-10T09:05:49Z","date_updated":"2024-04-10T09:05:49Z","relation":"main_file","creator":"dernst","file_name":"2021_mBio_Le.pdf","success":1,"checksum":"529e3f97ae5c5f5cc743c4fc130c9440","content_type":"application/pdf","file_id":"15309","file_size":1344204,"access_level":"open_access"}],"date_created":"2024-04-03T07:51:57Z","date_updated":"2024-04-10T09:13:59Z","has_accepted_license":"1","status":"public","issue":"4","language":[{"iso":"eng"}],"ddc":["570"],"author":[{"last_name":"Le","full_name":"Le, Dai","first_name":"Dai"},{"first_name":"Ekaterina","full_name":"Krasnopeeva, Ekaterina","id":"1F1EE44A-BF83-11EA-B3C1-BB9CC619BF3A","last_name":"Krasnopeeva"},{"last_name":"Sinjab","first_name":"Faris","full_name":"Sinjab, Faris"},{"last_name":"Pilizota","full_name":"Pilizota, Teuta","first_name":"Teuta"},{"last_name":"Kim","full_name":"Kim, Minsu","first_name":"Minsu"}],"type":"journal_article","publication_status":"published","quality_controlled":"1","file_date_updated":"2024-04-10T09:05:49Z","article_processing_charge":"Yes","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"08","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"citation":{"apa":"Le, D., Krasnopeeva, E., Sinjab, F., Pilizota, T., &#38; Kim, M. (2021). Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. <i>MBio</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/mbio.00676-21\">https://doi.org/10.1128/mbio.00676-21</a>","ieee":"D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, and M. Kim, “Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria,” <i>mBio</i>, vol. 12, no. 4. American Society for Microbiology, 2021.","ama":"Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. <i>mBio</i>. 2021;12(4). doi:<a href=\"https://doi.org/10.1128/mbio.00676-21\">10.1128/mbio.00676-21</a>","chicago":"Le, Dai, Ekaterina Krasnopeeva, Faris Sinjab, Teuta Pilizota, and Minsu Kim. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria.” <i>MBio</i>. American Society for Microbiology, 2021. <a href=\"https://doi.org/10.1128/mbio.00676-21\">https://doi.org/10.1128/mbio.00676-21</a>.","mla":"Le, Dai, et al. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria.” <i>MBio</i>, vol. 12, no. 4, 676, American Society for Microbiology, 2021, doi:<a href=\"https://doi.org/10.1128/mbio.00676-21\">10.1128/mbio.00676-21</a>.","short":"D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, M. Kim, MBio 12 (2021).","ista":"Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. 2021. Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. mBio. 12(4), 676."}},{"quality_controlled":"1","author":[{"last_name":"Czumaj","full_name":"Czumaj, Artur","first_name":"Artur"},{"last_name":"Davies","id":"11396234-BB50-11E9-B24C-90FCE5697425","orcid":"0000-0002-5646-9524","full_name":"Davies, Peter","first_name":"Peter"},{"last_name":"Parter","full_name":"Parter, Merav","first_name":"Merav"}],"type":"journal_article","publication_status":"published","month":"01","citation":{"ista":"Czumaj A, Davies P, Parter M. 2021. Simple, deterministic, constant-round coloring in congested clique and MPC. SIAM Journal on Computing. 50(5), 1603–1626.","short":"A. Czumaj, P. Davies, M. Parter, SIAM Journal on Computing 50 (2021) 1603–1626.","mla":"Czumaj, Artur, et al. “Simple, Deterministic, Constant-Round Coloring in Congested Clique and MPC.” <i>SIAM Journal on Computing</i>, vol. 50, no. 5, Society for Industrial and Applied Mathematics, 2021, pp. 1603–26, doi:<a href=\"https://doi.org/10.1137/20m1366502\">10.1137/20m1366502</a>.","chicago":"Czumaj, Artur, Peter Davies, and Merav Parter. “Simple, Deterministic, Constant-Round Coloring in Congested Clique and MPC.” <i>SIAM Journal on Computing</i>. Society for Industrial and Applied Mathematics, 2021. <a href=\"https://doi.org/10.1137/20m1366502\">https://doi.org/10.1137/20m1366502</a>.","apa":"Czumaj, A., Davies, P., &#38; Parter, M. (2021). Simple, deterministic, constant-round coloring in congested clique and MPC. <i>SIAM Journal on Computing</i>. Society for Industrial and Applied Mathematics. <a href=\"https://doi.org/10.1137/20m1366502\">https://doi.org/10.1137/20m1366502</a>","ieee":"A. Czumaj, P. Davies, and M. Parter, “Simple, deterministic, constant-round coloring in congested clique and MPC,” <i>SIAM Journal on Computing</i>, vol. 50, no. 5. Society for Industrial and Applied Mathematics, pp. 1603–1626, 2021.","ama":"Czumaj A, Davies P, Parter M. Simple, deterministic, constant-round coloring in congested clique and MPC. <i>SIAM Journal on Computing</i>. 2021;50(5):1603-1626. doi:<a href=\"https://doi.org/10.1137/20m1366502\">10.1137/20m1366502</a>"},"oa_version":"None","article_processing_charge":"No","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_created":"2024-04-03T07:53:22Z","date_updated":"2025-09-10T10:14:11Z","isi":1,"issue":"5","language":[{"iso":"eng"}],"status":"public","date_published":"2021-01-01T00:00:00Z","article_type":"original","title":"Simple, deterministic, constant-round coloring in congested clique and MPC","scopus_import":"1","intvolume":"        50","_id":"15271","department":[{"_id":"DaAl"}],"publication_identifier":{"issn":["0097-5397"],"eissn":["1095-7111"]},"publication":"SIAM Journal on Computing","page":"1603-1626","external_id":{"isi":["000713008600004"]},"publisher":"Society for Industrial and Applied Mathematics","ec_funded":1,"abstract":[{"text":"We settle the complexity of the (∆ + 1)-coloring and (∆ + 1)-list coloring problems intheCONGESTED CLIQUEmodel by presenting a simpledeterministicalgorithm for both problemsrunning in a constant number of rounds.  This matches the complexity of the recent breakthroughrandomizedconstant-round (∆ + 1)-list coloring algorithm due to Chang et al.  [Proceedings of the38th  ACM  Symposium  on  Principles  of  Distributed  Computing,  2019]  and  significantly  improvesupon the state-of-the-artO(log ∆)-round deterministic (∆ + 1)-coloring bound of Parter [Proceed-ings of the 45th Annual International Colloquium on Automata, Languages and Programming].  Aremarkable property of our algorithm is its simplicity.  Whereas the state-of-the-artrandomizedal-gorithms for this problem are based on the quite involved local coloring algorithm of Chang, Li, andPettie [Proceedings of the 50th Annual ACM SIGACT Symposium on Theory of Computing, 2018],our algorithm can be described in just a few lines.  At a high level, it applies a careful derandomiza-tion of a recursive procedure which partitions the nodes and their respective palettes into separatebins.  We show that afterO(1) recursion steps, the remaining uncolored subgraph within each bin haslinear size and thus can be solved locally by collecting it to a single node.  This algorithm can alsobe implemented in the massively parallel computation (MPC) model provided that each machine haslinear (inn, the number of nodes in the input graph) space.  We also show an extension of our algo-rithm to theMPCregime, in which machines havesublinearspace:  we present the first deterministic(∆ + 1)-list coloring algorithm designed for sublinear-spaceMPC, which runs inO(log ∆ + log logn)rounds.","lang":"eng"}],"volume":50,"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020"}],"year":"2021","doi":"10.1137/20m1366502","fulldoi":"https://doi.org/10.1137/20m1366502","keyword":["General Mathematics","General Computer Science"],"acknowledgement":"The  first  author  was  partially  supported  by  the  Centre  for  Discrete  Mathematics and its Applications, by the IBM Faculty Award, and by the EPSRC award EP/N011163/1.  The second author was partially supported by the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement 754411.  The first and third authors were partially supported by a Weizmann-UK Making Connections grant.","day":"01"},{"status":"public","has_accepted_license":"1","language":[{"iso":"eng"}],"ddc":["570"],"issue":"7","file":[{"content_type":"application/pdf","checksum":"7352b195e4db6d404f702fe6ad8b55ad","success":1,"creator":"dernst","file_name":"2021_PlosGenetics_Tang.pdf","date_created":"2024-04-10T08:53:43Z","date_updated":"2024-04-10T08:53:43Z","relation":"main_file","access_level":"open_access","file_size":4224934,"file_id":"15308"}],"date_created":"2024-04-03T07:57:12Z","date_updated":"2024-04-10T08:57:16Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa_version":"Published Version","citation":{"ama":"Tang LTH, Trivedi M, Freund J, et al. The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. <i>PLOS Genetics</i>. 2021;17(7). doi:<a href=\"https://doi.org/10.1371/journal.pgen.1009475\">10.1371/journal.pgen.1009475</a>","apa":"Tang, L. T. H., Trivedi, M., Freund, J., Salazar, C. J., Rahman, M., Ramirez, N., … Bülow, H. E. (2021). The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. <i>PLOS Genetics</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1009475\">https://doi.org/10.1371/journal.pgen.1009475</a>","ieee":"L. T. H. Tang <i>et al.</i>, “The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning,” <i>PLOS Genetics</i>, vol. 17, no. 7. Public Library of Science, 2021.","chicago":"Tang, Leo T. H., Meera Trivedi, Jenna Freund, Christopher J. Salazar, Maisha Rahman, Nelson Ramirez, Garrett Lee, Yu Wang, Barth D. Grant, and Hannes E. Bülow. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.” <i>PLOS Genetics</i>. Public Library of Science, 2021. <a href=\"https://doi.org/10.1371/journal.pgen.1009475\">https://doi.org/10.1371/journal.pgen.1009475</a>.","mla":"Tang, Leo T. H., et al. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.” <i>PLOS Genetics</i>, vol. 17, no. 7, e1009475, Public Library of Science, 2021, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1009475\">10.1371/journal.pgen.1009475</a>.","short":"L.T.H. Tang, M. Trivedi, J. Freund, C.J. Salazar, M. Rahman, N. Ramirez, G. Lee, Y. Wang, B.D. Grant, H.E. Bülow, PLOS Genetics 17 (2021).","ista":"Tang LTH, Trivedi M, Freund J, Salazar CJ, Rahman M, Ramirez N, Lee G, Wang Y, Grant BD, Bülow HE. 2021. The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. PLOS Genetics. 17(7), e1009475."},"month":"07","publication_status":"published","type":"journal_article","author":[{"last_name":"Tang","first_name":"Leo T. H.","full_name":"Tang, Leo T. H."},{"last_name":"Trivedi","first_name":"Meera","full_name":"Trivedi, Meera"},{"last_name":"Freund","full_name":"Freund, Jenna","first_name":"Jenna"},{"last_name":"Salazar","full_name":"Salazar, Christopher J.","first_name":"Christopher J."},{"first_name":"Maisha","full_name":"Rahman, Maisha","last_name":"Rahman"},{"last_name":"Ramirez","id":"39831956-E4FE-11E9-85DE-0DC7E5697425","full_name":"Ramirez, Nelson","first_name":"Nelson"},{"first_name":"Garrett","full_name":"Lee, Garrett","last_name":"Lee"},{"last_name":"Wang","full_name":"Wang, Yu","first_name":"Yu"},{"last_name":"Grant","full_name":"Grant, Barth D.","first_name":"Barth D."},{"last_name":"Bülow","full_name":"Bülow, Hannes E.","first_name":"Hannes E."}],"file_date_updated":"2024-04-10T08:53:43Z","quality_controlled":"1","day":"01","keyword":["Cancer Research","Genetics (clinical)","Genetics","Molecular Biology","Ecology","Evolution","Behavior and Systematics"],"fulldoi":"https://doi.org/10.1371/journal.pgen.1009475","year":"2021","doi":"10.1371/journal.pgen.1009475","volume":17,"abstract":[{"text":"The assembly of neuronal circuits involves the migrations of neurons from their place of birth to their final location in the nervous system, as well as the coordinated growth and patterning of axons and dendrites. In screens for genes required for patterning of the nervous system, we identified the <jats:italic>catp-8/P5A-ATPase</jats:italic> as an important regulator of neural patterning. P5A-ATPases are part of the P-type ATPases, a family of proteins known to serve a conserved function as transporters of ions, lipids and polyamines in unicellular eukaryotes, plants, and humans. While the function of many P-type ATPases is relatively well understood, the function of P5A-ATPases in metazoans remained elusive. We show here, that the <jats:italic>Caenorhabditis elegans</jats:italic> ortholog <jats:italic>catp-8/P5A-ATPase</jats:italic> is required for defined aspects of nervous system development. Specifically, the <jats:italic>catp-8/P5A-ATPase</jats:italic> serves functions in shaping the elaborately sculpted dendritic trees of somatosensory PVD neurons. Moreover, <jats:italic>catp-8/P5A-ATPase</jats:italic> is required for axonal guidance and repulsion at the midline, as well as embryonic and postembryonic neuronal migrations. Interestingly, not all axons at the midline require <jats:italic>catp-8/P5A-ATPase</jats:italic>, although the axons run in the same fascicles and navigate the same space. Similarly, not all neuronal migrations require <jats:italic>catp-8/P5A-ATPase</jats:italic>. A CATP-8/P5A-ATPase reporter is localized to the ER in most, if not all, tissues and <jats:italic>catp-8/P5A-ATPase</jats:italic> can function both cell-autonomously and non-autonomously to regulate neuronal development. Genetic analyses establish that <jats:italic>catp-8/P5A-ATPase</jats:italic> can function in multiple pathways, including the Menorin pathway, previously shown to control dendritic patterning in PVD, and Wnt signaling, which functions to control neuronal migrations. Lastly, we show that <jats:italic>catp-8/P5A-ATPase</jats:italic> is required for localizing select transmembrane proteins necessary for dendrite morphogenesis. Collectively, our studies suggest that <jats:italic>catp-8/P5A-ATPase</jats:italic> serves diverse, yet specific, roles in different genetic pathways and may be involved in the regulation or localization of transmembrane and secreted proteins to specific subcellular compartments.","lang":"eng"}],"publisher":"Public Library of Science","external_id":{"pmid":["34197450"]},"publication":"PLOS Genetics","pmid":1,"publication_identifier":{"issn":["1553-7404"]},"department":[{"_id":"MaDe"}],"oa":1,"_id":"15272","article_number":"e1009475","intvolume":"        17","title":"The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning","article_type":"original","date_published":"2021-07-01T00:00:00Z"},{"_id":"15273","department":[{"_id":"PeJo"}],"oa":1,"publication_identifier":{"issn":["2050-084X"]},"article_type":"original","date_published":"2021-02-22T00:00:00Z","article_number":"e63819","intvolume":"        10","title":"Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse","abstract":[{"lang":"eng","text":"Synapses of glutamatergic mossy fibers (MFs) onto cerebellar unipolar brush cells (UBCs) generate slow excitatory (ON) or inhibitory (OFF) postsynaptic responses dependent on the complement of glutamate receptors expressed on the UBC’s large dendritic brush. Using mouse brain slice recording and computational modeling of synaptic transmission, we found that substantial glutamate is maintained in the UBC synaptic cleft, sufficient to modify spontaneous firing in OFF UBCs and tonically desensitize AMPARs of ON UBCs. The source of this ambient glutamate was spontaneous, spike-independent exocytosis from the MF terminal, and its level was dependent on activity of glutamate transporters EAAT1–2. Increasing levels of ambient glutamate shifted the polarity of evoked synaptic responses in ON UBCs and altered the phase of responses to in vivo-like synaptic activity. Unlike classical fast synapses, receptors at the UBC synapse are virtually always exposed to a significant level of glutamate, which varies in a graded manner during transmission."}],"volume":10,"year":"2021","doi":"10.7554/elife.63819","day":"22","keyword":["General Immunology and Microbiology","General Biochemistry","Genetics and Molecular Biology","General Medicine","General Neuroscience"],"fulldoi":"https://doi.org/10.7554/elife.63819","pmid":1,"publisher":"eLife Sciences Publications","external_id":{"pmid":["33616036"]},"publication":"eLife","month":"02","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"citation":{"ama":"Balmer TS, Borges Merjane C, Trussell LO. Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. <i>eLife</i>. 2021;10. doi:<a href=\"https://doi.org/10.7554/elife.63819\">10.7554/elife.63819</a>","apa":"Balmer, T. S., Borges Merjane, C., &#38; Trussell, L. O. (2021). Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.63819\">https://doi.org/10.7554/elife.63819</a>","ieee":"T. S. Balmer, C. Borges Merjane, and L. O. Trussell, “Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse,” <i>eLife</i>, vol. 10. eLife Sciences Publications, 2021.","chicago":"Balmer, Timothy S, Carolina Borges Merjane, and Laurence O Trussell. “Incomplete Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration at a Cerebellar Synapse.” <i>ELife</i>. eLife Sciences Publications, 2021. <a href=\"https://doi.org/10.7554/elife.63819\">https://doi.org/10.7554/elife.63819</a>.","mla":"Balmer, Timothy S., et al. “Incomplete Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration at a Cerebellar Synapse.” <i>ELife</i>, vol. 10, e63819, eLife Sciences Publications, 2021, doi:<a href=\"https://doi.org/10.7554/elife.63819\">10.7554/elife.63819</a>.","ista":"Balmer TS, Borges Merjane C, Trussell LO. 2021. Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. eLife. 10, e63819.","short":"T.S. Balmer, C. Borges Merjane, L.O. Trussell, ELife 10 (2021)."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes","quality_controlled":"1","file_date_updated":"2024-04-09T11:13:07Z","type":"journal_article","author":[{"last_name":"Balmer","first_name":"Timothy S","full_name":"Balmer, Timothy S"},{"first_name":"Carolina","full_name":"Borges Merjane, Carolina","id":"4305C450-F248-11E8-B48F-1D18A9856A87","last_name":"Borges Merjane","orcid":"0000-0003-0005-401X"},{"last_name":"Trussell","first_name":"Laurence O","full_name":"Trussell, Laurence O"}],"publication_status":"published","ddc":["570"],"language":[{"iso":"eng"}],"status":"public","has_accepted_license":"1","date_created":"2024-04-03T07:58:11Z","date_updated":"2024-04-09T11:15:01Z","file":[{"file_name":"2021_eLife_Balmer.pdf","creator":"dernst","success":1,"date_updated":"2024-04-09T11:13:07Z","date_created":"2024-04-09T11:13:07Z","relation":"main_file","content_type":"application/pdf","checksum":"bbd4de2e54b7fbc11fba14f59e87fe3f","file_id":"15307","file_size":6997954,"access_level":"open_access"}]}]