---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '15179'
abstract:
- lang: eng
text: The fungal bioluminescence pathway can be reconstituted in other organisms
allowing luminescence imaging without exogenously supplied substrate. The pathway
starts from hispidin biosynthesis—a step catalyzed by a large fungal polyketide
synthase that requires a posttranslational modification for activity. Here, we
report identification of alternative compact hispidin synthases encoded by a phylogenetically
diverse group of plants. A hybrid bioluminescence pathway that combines plant
and fungal genes is more compact, not dependent on availability of machinery for
posttranslational modifications, and confers autonomous bioluminescence in yeast,
mammalian, and plant hosts. The compact size of plant hispidin synthases enables
additional modes of delivery of autoluminescence, such as delivery with viral
vectors.
acknowledgement: "We thank Milaboratory (milaboratory.com) for the access to computing
and storage infrastructure. We thank J. Petrasek for providing the BY-2 cell culture
line. We thank Konstantin Lukyanov laboratory and Sergey Deyev laboratory for assistance
with experiments.\r\nThis study was partially funded by Light Bio and Planta. The
Synthetic biology Group is funded by the MRC London Institute of Medical Sciences
(UKRI MC-A658-5QEA0). Cloning and luminescent assays performed in BY-2 were partially
supported by RSF, project number 22-14-00400, https://rscf.ru/project/22-14-00400/.
Plant transformations were funded by RFBR and MOST, project number 21-54-52004.
Plant imaging experiments were funded by RSF, project number 22-74-00124, https://rscf.ru/project/22-74-00124/.
Viral delivery experiments were funded by the grant PID2019-108203RB-I00 Plan Nacional
I + D from the Ministerio de Ciencia e Innovación (Spain) through the Agencia Estatal
de Investigación (cofinanced by the European Regional Development Fund)."
article_number: adk1992
article_processing_charge: Yes
article_type: original
author:
- first_name: Kseniia A.
full_name: Palkina, Kseniia A.
last_name: Palkina
- first_name: Tatiana A.
full_name: Karataeva, Tatiana A.
last_name: Karataeva
- first_name: Maxim M.
full_name: Perfilov, Maxim M.
last_name: Perfilov
- first_name: Liliia I.
full_name: Fakhranurova, Liliia I.
last_name: Fakhranurova
- first_name: Nadezhda M.
full_name: Markina, Nadezhda M.
last_name: Markina
- first_name: Louisa
full_name: Gonzalez Somermeyer, Louisa
id: 4720D23C-F248-11E8-B48F-1D18A9856A87
last_name: Gonzalez Somermeyer
orcid: 0000-0001-9139-5383
- first_name: Elena
full_name: Garcia-Perez, Elena
last_name: Garcia-Perez
- first_name: Marta
full_name: Vazquez-Vilar, Marta
last_name: Vazquez-Vilar
- first_name: Marta
full_name: Rodriguez-Rodriguez, Marta
last_name: Rodriguez-Rodriguez
- first_name: Victor
full_name: Vazquez-Vilriales, Victor
last_name: Vazquez-Vilriales
- first_name: Ekaterina S.
full_name: Shakhova, Ekaterina S.
last_name: Shakhova
- first_name: Tatiana
full_name: Mitiouchkina, Tatiana
last_name: Mitiouchkina
- first_name: Olga A.
full_name: Belozerova, Olga A.
last_name: Belozerova
- first_name: Sergey I.
full_name: Kovalchuk, Sergey I.
last_name: Kovalchuk
- first_name: Anna
full_name: Alekberova, Anna
last_name: Alekberova
- first_name: Alena K.
full_name: Malyshevskaia, Alena K.
last_name: Malyshevskaia
- first_name: Evgenia N.
full_name: Bugaeva, Evgenia N.
last_name: Bugaeva
- first_name: Elena B.
full_name: Guglya, Elena B.
last_name: Guglya
- first_name: Anastasia
full_name: Balakireva, Anastasia
last_name: Balakireva
- first_name: Nikita
full_name: Sytov, Nikita
last_name: Sytov
- first_name: Anastasia
full_name: Bezlikhotnova, Anastasia
last_name: Bezlikhotnova
- first_name: Daria I.
full_name: Boldyreva, Daria I.
last_name: Boldyreva
- first_name: Vladislav V.
full_name: Babenko, Vladislav V.
last_name: Babenko
- first_name: Fyodor
full_name: Kondrashov, Fyodor
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
- first_name: Vladimir V.
full_name: Choob, Vladimir V.
last_name: Choob
- first_name: Diego
full_name: Orzaez, Diego
last_name: Orzaez
- first_name: Ilia V.
full_name: Yampolsky, Ilia V.
last_name: Yampolsky
- first_name: Alexander S.
full_name: Mishin, Alexander S.
last_name: Mishin
- first_name: Karen S.
full_name: Sarkisyan, Karen S.
last_name: Sarkisyan
citation:
ama: Palkina KA, Karataeva TA, Perfilov MM, et al. A hybrid pathway for self-sustained
luminescence. Science Advances. 2024;10(10). doi:10.1126/sciadv.adk1992
apa: Palkina, K. A., Karataeva, T. A., Perfilov, M. M., Fakhranurova, L. I., Markina,
N. M., Gonzalez Somermeyer, L., … Sarkisyan, K. S. (2024). A hybrid pathway for
self-sustained luminescence. Science Advances. American Association for
the Advancement of Science. https://doi.org/10.1126/sciadv.adk1992
chicago: Palkina, Kseniia A., Tatiana A. Karataeva, Maxim M. Perfilov, Liliia I.
Fakhranurova, Nadezhda M. Markina, Louisa Gonzalez Somermeyer, Elena Garcia-Perez,
et al. “A Hybrid Pathway for Self-Sustained Luminescence.” Science Advances.
American Association for the Advancement of Science, 2024. https://doi.org/10.1126/sciadv.adk1992.
ieee: K. A. Palkina et al., “A hybrid pathway for self-sustained luminescence,”
Science Advances, vol. 10, no. 10. American Association for the Advancement
of Science, 2024.
ista: Palkina KA, Karataeva TA, Perfilov MM, Fakhranurova LI, Markina NM, Gonzalez
Somermeyer L, Garcia-Perez E, Vazquez-Vilar M, Rodriguez-Rodriguez M, Vazquez-Vilriales
V, Shakhova ES, Mitiouchkina T, Belozerova OA, Kovalchuk SI, Alekberova A, Malyshevskaia
AK, Bugaeva EN, Guglya EB, Balakireva A, Sytov N, Bezlikhotnova A, Boldyreva DI,
Babenko VV, Kondrashov F, Choob VV, Orzaez D, Yampolsky IV, Mishin AS, Sarkisyan
KS. 2024. A hybrid pathway for self-sustained luminescence. Science Advances.
10(10), adk1992.
mla: Palkina, Kseniia A., et al. “A Hybrid Pathway for Self-Sustained Luminescence.”
Science Advances, vol. 10, no. 10, adk1992, American Association for the
Advancement of Science, 2024, doi:10.1126/sciadv.adk1992.
short: K.A. Palkina, T.A. Karataeva, M.M. Perfilov, L.I. Fakhranurova, N.M. Markina,
L. Gonzalez Somermeyer, E. Garcia-Perez, M. Vazquez-Vilar, M. Rodriguez-Rodriguez,
V. Vazquez-Vilriales, E.S. Shakhova, T. Mitiouchkina, O.A. Belozerova, S.I. Kovalchuk,
A. Alekberova, A.K. Malyshevskaia, E.N. Bugaeva, E.B. Guglya, A. Balakireva, N.
Sytov, A. Bezlikhotnova, D.I. Boldyreva, V.V. Babenko, F. Kondrashov, V.V. Choob,
D. Orzaez, I.V. Yampolsky, A.S. Mishin, K.S. Sarkisyan, Science Advances 10 (2024).
date_created: 2024-03-25T08:54:33Z
date_published: 2024-03-01T00:00:00Z
date_updated: 2025-09-04T13:16:05Z
day: '01'
ddc:
- '580'
department:
- _id: FyKo
doi: 10.1126/sciadv.adk1992
external_id:
isi:
- '001187580500013'
pmid:
- '38457503'
file:
- access_level: open_access
checksum: a19c43b260ea0bbaf895a29712e3153c
content_type: application/pdf
creator: dernst
date_created: 2024-03-25T09:42:10Z
date_updated: 2024-03-25T09:42:10Z
file_id: '15185'
file_name: 2024_ScienceAdv_Palkina.pdf
file_size: 1499302
relation: main_file
success: 1
file_date_updated: 2024-03-25T09:42:10Z
has_accepted_license: '1'
intvolume: ' 10'
isi: 1
issue: '10'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Science Advances
publication_identifier:
eissn:
- 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: A hybrid pathway for self-sustained luminescence
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 10
year: '2024'
...
---
DOAJ_listed: '1'
_id: '15181'
abstract:
- lang: eng
text: We demonstrate the failure of the adiabatic Born-Oppenheimer approximation
to describe the ground state of a quantum impurity within an ultracold Fermi gas
despite substantial mass differences between the bath and impurity species. Increasing
repulsion leads to the appearance of nonadiabatic couplings between the fast bath
and slow impurity degrees of freedom, which reduce the parity symmetry of the
latter according to the pseudo Jahn-Teller effect. The presence of this mechanism
is associated to a conical intersection involving the impurity position and the
inverse of the interaction strength, which acts as a synthetic dimension. We elucidate
the presence of these effects via a detailed ground-state analysis involving the
comparison of ab initio fully correlated simulations with effective models. Our
study suggests ultracold atomic ensembles as potent emulators of complex molecular
phenomena.
acknowledgement: "This work has been funded by the Cluster of Excellence “Advanced
Imaging of Matter” of the Deutsche Forschungsgemeinschaft (DFG) - EXC 2056 - Project
ID 390715994.\r\nG.M.K. gratefully acknowledges funding from the European Union’s
Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
Grant Agreement No. 101034413."
article_number: '013257'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: A.
full_name: Becker, A.
last_name: Becker
- first_name: Georgios
full_name: Koutentakis, Georgios
id: d7b23d3a-9e21-11ec-b482-f76739596b95
last_name: Koutentakis
- first_name: P.
full_name: Schmelcher, P.
last_name: Schmelcher
citation:
ama: Becker A, Koutentakis G, Schmelcher P. Synthetic dimension-induced pseudo Jahn-Teller
effect in one-dimensional confined fermions. Physical Review Research.
2024;6(1). doi:10.1103/physrevresearch.6.013257
apa: Becker, A., Koutentakis, G., & Schmelcher, P. (2024). Synthetic dimension-induced
pseudo Jahn-Teller effect in one-dimensional confined fermions. Physical Review
Research. American Physical Society. https://doi.org/10.1103/physrevresearch.6.013257
chicago: Becker, A., Georgios Koutentakis, and P. Schmelcher. “Synthetic Dimension-Induced
Pseudo Jahn-Teller Effect in One-Dimensional Confined Fermions.” Physical Review
Research. American Physical Society, 2024. https://doi.org/10.1103/physrevresearch.6.013257.
ieee: A. Becker, G. Koutentakis, and P. Schmelcher, “Synthetic dimension-induced
pseudo Jahn-Teller effect in one-dimensional confined fermions,” Physical Review
Research, vol. 6, no. 1. American Physical Society, 2024.
ista: Becker A, Koutentakis G, Schmelcher P. 2024. Synthetic dimension-induced pseudo
Jahn-Teller effect in one-dimensional confined fermions. Physical Review Research.
6(1), 013257.
mla: Becker, A., et al. “Synthetic Dimension-Induced Pseudo Jahn-Teller Effect in
One-Dimensional Confined Fermions.” Physical Review Research, vol. 6, no.
1, 013257, American Physical Society, 2024, doi:10.1103/physrevresearch.6.013257.
short: A. Becker, G. Koutentakis, P. Schmelcher, Physical Review Research 6 (2024).
date_created: 2024-03-25T08:57:07Z
date_published: 2024-03-01T00:00:00Z
date_updated: 2025-05-14T09:32:03Z
day: '01'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1103/physrevresearch.6.013257
ec_funded: 1
external_id:
arxiv:
- '2310.17995'
file:
- access_level: open_access
checksum: 4e0e58d1f58386fb016284c84db2a300
content_type: application/pdf
creator: dernst
date_created: 2024-03-25T09:24:55Z
date_updated: 2024-03-25T09:24:55Z
file_id: '15183'
file_name: 2024_PhysicalReviewResearch_Becker.pdf
file_size: 2207067
relation: main_file
success: 1
file_date_updated: 2024-03-25T09:24:55Z
has_accepted_license: '1'
intvolume: ' 6'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Physical Review Research
publication_identifier:
eissn:
- 2643-1564
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synthetic dimension-induced pseudo Jahn-Teller effect in one-dimensional confined
fermions
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2024'
...
---
APC_amount: 2940 EUR
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '15186'
abstract:
- lang: eng
text: The elimination of rain evaporation in the planetary boundary layer (PBL)
has been found to lead to convective self‐aggregation (CSA) even without radiative
feedback, but the precise mechanisms underlying this phenomenon remain unclear.
We conducted cloud‐resolving simulations with two domain sizes and progressively
reduced rain evaporation in the PBL. Surprisingly, CSA only occurred when rain
evaporation was almost completely removed. The additional convective heating resulting
from the reduction of evaporative cooling in the moist patch was found to be the
trigger, thereafter a dry subsidence intrusion into the PBL in the dry patch takes
over and sets CSA in motion. Temperature and moisture anomalies oppose each other
in their buoyancy effects, hence explaining the need for almost total rain evaporation
removal. We also found radiative cooling and not cold pools to be the leading
cause for the comparative ease of CSA to take place in the larger domain.
acknowledgement: "YLH is supported by funding from the European Union's Horizon 2020
research and innovation programme under the Marie Skłodowska-Curie Grant 101034413.
CM gratefully acknowledges funding from the European Research Council (ERC) under
the European Union's Horizon 2020 research and innovation program (Project CLUSTER,
Grant 805041). The authors warmly thank Steven Sherwood, Jiawei Bao, Bidyut Goswami,
and Martin Janssens for stimulating and helpful discussions. They also thank Christopher
Holloway and an anonymous reviewer for providing helpful feedback that greatly improved
this manuscript.\r\n"
article_number: ' e2023GL106523'
article_processing_charge: Yes
article_type: original
author:
- first_name: Yi-Ling
full_name: Hwong, Yi-Ling
id: 1217aa61-4dd1-11ec-9ac3-f2ba3f17ee22
last_name: Hwong
orcid: 0000-0001-9281-3479
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
citation:
ama: Hwong Y-L, Muller CJ. The unreasonable efficiency of total rain evaporation
removal in triggering convective self‐aggregation. Geophysical Research Letters.
2024;51(6). doi:10.1029/2023gl106523
apa: Hwong, Y.-L., & Muller, C. J. (2024). The unreasonable efficiency of total
rain evaporation removal in triggering convective self‐aggregation. Geophysical
Research Letters. Wiley. https://doi.org/10.1029/2023gl106523
chicago: Hwong, Yi-Ling, and Caroline J Muller. “The Unreasonable Efficiency of
Total Rain Evaporation Removal in Triggering Convective Self‐aggregation.” Geophysical
Research Letters. Wiley, 2024. https://doi.org/10.1029/2023gl106523.
ieee: Y.-L. Hwong and C. J. Muller, “The unreasonable efficiency of total rain evaporation
removal in triggering convective self‐aggregation,” Geophysical Research Letters,
vol. 51, no. 6. Wiley, 2024.
ista: Hwong Y-L, Muller CJ. 2024. The unreasonable efficiency of total rain evaporation
removal in triggering convective self‐aggregation. Geophysical Research Letters.
51(6), e2023GL106523.
mla: Hwong, Yi-Ling, and Caroline J. Muller. “The Unreasonable Efficiency of Total
Rain Evaporation Removal in Triggering Convective Self‐aggregation.” Geophysical
Research Letters, vol. 51, no. 6, e2023GL106523, Wiley, 2024, doi:10.1029/2023gl106523.
short: Y.-L. Hwong, C.J. Muller, Geophysical Research Letters 51 (2024).
corr_author: '1'
date_created: 2024-03-25T10:27:30Z
date_published: 2024-03-19T00:00:00Z
date_updated: 2025-09-04T13:16:39Z
day: '19'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1029/2023gl106523
ec_funded: 1
external_id:
isi:
- '001187002300001'
file:
- access_level: open_access
checksum: eacb011091a503b9e7b748fef639ba4c
content_type: application/pdf
creator: dernst
date_created: 2024-03-25T11:28:25Z
date_updated: 2024-03-25T11:28:25Z
file_id: '15187'
file_name: 2024_GeophysResLetters_Hwong.pdf
file_size: 1280108
relation: main_file
success: 1
file_date_updated: 2024-03-25T11:28:25Z
has_accepted_license: '1'
intvolume: ' 51'
isi: 1
issue: '6'
keyword:
- General Earth and Planetary Sciences
- Geophysics
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
- _id: 629205d8-2b32-11ec-9570-e1356ff73576
call_identifier: H2020
grant_number: '805041'
name: Organization of CLoUdS, and implications of Tropical cyclones and for the
Energetics of the tropics, in current and waRming climate
publication: Geophysical Research Letters
publication_identifier:
eissn:
- 1944-8007
issn:
- 0094-8276
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
record:
- id: '19307'
relation: research_data
status: public
scopus_import: '1'
status: public
title: The unreasonable efficiency of total rain evaporation removal in triggering
convective self‐aggregation
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 51
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '15247'
abstract:
- lang: eng
text: Extending the notion of sunflowers, we call a family of at least two sets
an odd-sunflower if every element of the underlying set is contained in an odd
number of sets or in none of them. It follows from the Erdős–Szemerédi conjecture,
recently proved by Naslund and Sawin, that there is a constant <2 such that every
family of subsets of an n-element set that contains no odd-sunflower consists
of at most n sets. We construct such families of size at least 1.5021n. We also
characterize minimal odd-sunflowers of triples.
acknowledgement: We are grateful to Balázs Keszegh, and to the members of the Miklós
Schweitzer Competition committee of 2022 for valuable discussions, and Shira Zerbib
for pointing out several important mathematical typos.
article_number: '105889'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Peter
full_name: Frankl, Peter
last_name: Frankl
- first_name: János
full_name: Pach, János
id: E62E3130-B088-11EA-B919-BF823C25FEA4
last_name: Pach
- first_name: Dömötör
full_name: Pálvölgyi, Dömötör
last_name: Pálvölgyi
citation:
ama: Frankl P, Pach J, Pálvölgyi D. Odd-sunflowers. Journal of Combinatorial
Theory, Series A. 2024;206(8). doi:10.1016/j.jcta.2024.105889
apa: Frankl, P., Pach, J., & Pálvölgyi, D. (2024). Odd-sunflowers. Journal
of Combinatorial Theory, Series A. Elsevier. https://doi.org/10.1016/j.jcta.2024.105889
chicago: Frankl, Peter, János Pach, and Dömötör Pálvölgyi. “Odd-Sunflowers.” Journal
of Combinatorial Theory, Series A. Elsevier, 2024. https://doi.org/10.1016/j.jcta.2024.105889.
ieee: P. Frankl, J. Pach, and D. Pálvölgyi, “Odd-sunflowers,” Journal of Combinatorial
Theory, Series A, vol. 206, no. 8. Elsevier, 2024.
ista: Frankl P, Pach J, Pálvölgyi D. 2024. Odd-sunflowers. Journal of Combinatorial
Theory, Series A. 206(8), 105889.
mla: Frankl, Peter, et al. “Odd-Sunflowers.” Journal of Combinatorial Theory,
Series A, vol. 206, no. 8, 105889, Elsevier, 2024, doi:10.1016/j.jcta.2024.105889.
short: P. Frankl, J. Pach, D. Pálvölgyi, Journal of Combinatorial Theory, Series
A 206 (2024).
corr_author: '1'
date_created: 2024-03-31T22:01:11Z
date_published: 2024-08-01T00:00:00Z
date_updated: 2025-09-04T13:20:39Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1016/j.jcta.2024.105889
external_id:
arxiv:
- '2310.16701'
isi:
- '001217739200001'
file:
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checksum: ffc29d65e712849f0d31009271e06a63
content_type: application/pdf
creator: dernst
date_created: 2025-01-09T08:37:20Z
date_updated: 2025-01-09T08:37:20Z
file_id: '18791'
file_name: 2024_JourCombiTheoryA_Frankl.pdf
file_size: 366029
relation: main_file
success: 1
file_date_updated: 2025-01-09T08:37:20Z
has_accepted_license: '1'
intvolume: ' 206'
isi: 1
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: Journal of Combinatorial Theory, Series A
publication_identifier:
eissn:
- 1096-0899
issn:
- 0097-3165
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Odd-sunflowers
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 206
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '15248'
abstract:
- lang: eng
text: Applying the technique of p-adic integration, we prove the topological mirror
symmetry conjecture of Hausel-Thaddeus for the moduli spaces of (strongly) parabolic
Higgs bundles for the structure groups SLn and PGLn, building on previous work
of Groechenig-Wyss-Ziegler on the non-parabolic case. We also prove the E-polynomial
of the smooth moduli space of parabolic GLn-Higgs bundles is independent of the
degree of the underlying vector bundles.
acknowledgement: Shiyu Shen has received funding from the European Union's Horizon
2020 research and innovation program under the Marie Skłodowska-Curie grant agreement
No. 101034413.
article_number: '109616'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Shiyu
full_name: Shen, Shiyu
id: 544cccd3-9005-11ec-87bc-94aef1c5b814
last_name: Shen
orcid: 0000-0002-4444-8718
citation:
ama: Shen S. Mirror symmetry for parabolic Higgs bundles via p-adic integration.
Advances in Mathematics. 2024;443(5). doi:10.1016/j.aim.2024.109616
apa: Shen, S. (2024). Mirror symmetry for parabolic Higgs bundles via p-adic integration.
Advances in Mathematics. Elsevier. https://doi.org/10.1016/j.aim.2024.109616
chicago: Shen, Shiyu. “Mirror Symmetry for Parabolic Higgs Bundles via P-Adic Integration.”
Advances in Mathematics. Elsevier, 2024. https://doi.org/10.1016/j.aim.2024.109616.
ieee: S. Shen, “Mirror symmetry for parabolic Higgs bundles via p-adic integration,”
Advances in Mathematics, vol. 443, no. 5. Elsevier, 2024.
ista: Shen S. 2024. Mirror symmetry for parabolic Higgs bundles via p-adic integration.
Advances in Mathematics. 443(5), 109616.
mla: Shen, Shiyu. “Mirror Symmetry for Parabolic Higgs Bundles via P-Adic Integration.”
Advances in Mathematics, vol. 443, no. 5, 109616, Elsevier, 2024, doi:10.1016/j.aim.2024.109616.
short: S. Shen, Advances in Mathematics 443 (2024).
corr_author: '1'
date_created: 2024-03-31T22:01:11Z
date_published: 2024-05-01T00:00:00Z
date_updated: 2025-09-04T13:21:18Z
day: '01'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1016/j.aim.2024.109616
ec_funded: 1
external_id:
arxiv:
- '2302.02817'
isi:
- '001216128200001'
file:
- access_level: open_access
checksum: 68f2f08136ccf547891a16a2c0621e97
content_type: application/pdf
creator: dernst
date_created: 2024-07-22T12:10:03Z
date_updated: 2024-07-22T12:10:03Z
file_id: '17315'
file_name: 2024_AdvancesMath_Shen.pdf
file_size: 702889
relation: main_file
success: 1
file_date_updated: 2024-07-22T12:10:03Z
has_accepted_license: '1'
intvolume: ' 443'
isi: 1
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Advances in Mathematics
publication_identifier:
eissn:
- 1090-2082
issn:
- 0001-8708
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mirror symmetry for parabolic Higgs bundles via p-adic integration
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 443
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '15249'
abstract:
- lang: eng
text: Observationally mapping the relation between galaxies and the intergalactic
medium (IGM) is of key interest for studies of cosmic reionization. Diffuse hydrogen
gas has typically been observed in H I Lyman-α (Lyα) absorption in the spectra
of bright background quasars. However, it is important to extend these measurements
to background galaxies as quasars become increasingly rare at high redshift and
rarely probe closely separated sight lines. Here, we use deep integral field spectroscopy
in the MUSE eXtremely Deep Field to demonstrate the measurement of the Lyα transmission
at z ≈ 4 in absorption to a background galaxy at z = 4.77. The H I transmission
is consistent with independent quasar sight lines at similar redshifts. Exploiting
the high number of spectroscopic redshifts of faint galaxies (500 between z =
4.0–4.7 within a radius of 8 arcmin) that are tracers of the density field, we
show that Lyα transmission is inversely correlated with galaxy density, i.e. transparent
regions in the Lyα forest mark underdense regions at z ≈ 4. Due to large-scale
clustering, galaxies are surrounded by excess H I absorption over the cosmic mean
out to 4 cMpc/h70. We also find that redshifts from the peak of the Lyα line are
typically offset from the systemic redshift by +170 km s−1. This work extends
results from z ≈ 2–3 to higher redshifts and demonstrates the power of deep integral
field spectroscopy to simultaneously measure the ionization structure of the IGM
and the large-scale density field in the early Universe.
acknowledgement: We thank the referee for constructive comments that helped improving
the paper. Based on observations collected at the European Southern Observatory
under ESO programme 1101.A-0127. Funded by the European Union (ERC, AGENTS, 101076224).
Views and opinions expressed are however those of the author(s) only and do not
necessarily reflect those of the European Union or the European Research Council.
Neither the European Union nor the granting authority can be held responsible for
them. GP acknowledges support from the Netherlands Research School for Astronomy
(Nederlandse Onderzoekschool Voor Astronomie, NOVA). JB acknowledges financial support
from the Fundação para a Ciência e a Tecnologia (FCT) through national funds PTDC/FIS-AST/4862/2020,
work contract 2020.03379.CEECIND, and research grants UIDB/04434/2020 and UIDP/04434/2020.
TU and LW acknowledge funding by the European Research Council through ERC-AdG SPECMAP-CGM,
GA 101020943. TG is supported by the ERC Starting grant 757258 ‘TRIPLE’.
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
- first_name: Christopher
full_name: Golling, Christopher
last_name: Golling
- first_name: Ruari
full_name: Mackenzie, Ruari
last_name: Mackenzie
- first_name: Gabriele
full_name: Pezzulli, Gabriele
last_name: Pezzulli
- first_name: Simon
full_name: Lilly, Simon
last_name: Lilly
- first_name: Joop
full_name: Schaye, Joop
last_name: Schaye
- first_name: Roland
full_name: Bacon, Roland
last_name: Bacon
- first_name: Haruka
full_name: Kusakabe, Haruka
last_name: Kusakabe
- first_name: Tanya
full_name: Urrutia, Tanya
last_name: Urrutia
- first_name: Leindert
full_name: Boogaard, Leindert
last_name: Boogaard
- first_name: Jarle
full_name: Brinchmann, Jarle
last_name: Brinchmann
- first_name: Michael V.
full_name: Maseda, Michael V.
last_name: Maseda
- first_name: Thibault
full_name: Garel, Thibault
last_name: Garel
- first_name: Nicolas F.
full_name: Bouché, Nicolas F.
last_name: Bouché
- first_name: Lutz
full_name: Wisotzki, Lutz
last_name: Wisotzki
citation:
ama: Matthee JJ, Golling C, Mackenzie R, et al. Large-scale excess H I absorption
around z ≈ 4 galaxies detected in a background galaxy spectrum in the MUSE eXtremely
deep field. Monthly Notices of the Royal Astronomical Society. 2024;529(3):2794-2806.
doi:10.1093/mnras/stae673
apa: Matthee, J. J., Golling, C., Mackenzie, R., Pezzulli, G., Lilly, S., Schaye,
J., … Wisotzki, L. (2024). Large-scale excess H I absorption around z ≈ 4 galaxies
detected in a background galaxy spectrum in the MUSE eXtremely deep field. Monthly
Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/stae673
chicago: Matthee, Jorryt J, Christopher Golling, Ruari Mackenzie, Gabriele Pezzulli,
Simon Lilly, Joop Schaye, Roland Bacon, et al. “Large-Scale Excess H I Absorption
around z ≈ 4 Galaxies Detected in a Background Galaxy Spectrum in the MUSE EXtremely
Deep Field.” Monthly Notices of the Royal Astronomical Society. Oxford
University Press, 2024. https://doi.org/10.1093/mnras/stae673.
ieee: J. J. Matthee et al., “Large-scale excess H I absorption around z ≈
4 galaxies detected in a background galaxy spectrum in the MUSE eXtremely deep
field,” Monthly Notices of the Royal Astronomical Society, vol. 529, no.
3. Oxford University Press, pp. 2794–2806, 2024.
ista: Matthee JJ, Golling C, Mackenzie R, Pezzulli G, Lilly S, Schaye J, Bacon R,
Kusakabe H, Urrutia T, Boogaard L, Brinchmann J, Maseda MV, Garel T, Bouché NF,
Wisotzki L. 2024. Large-scale excess H I absorption around z ≈ 4 galaxies detected
in a background galaxy spectrum in the MUSE eXtremely deep field. Monthly Notices
of the Royal Astronomical Society. 529(3), 2794–2806.
mla: Matthee, Jorryt J., et al. “Large-Scale Excess H I Absorption around z ≈ 4
Galaxies Detected in a Background Galaxy Spectrum in the MUSE EXtremely Deep Field.”
Monthly Notices of the Royal Astronomical Society, vol. 529, no. 3, Oxford
University Press, 2024, pp. 2794–806, doi:10.1093/mnras/stae673.
short: J.J. Matthee, C. Golling, R. Mackenzie, G. Pezzulli, S. Lilly, J. Schaye,
R. Bacon, H. Kusakabe, T. Urrutia, L. Boogaard, J. Brinchmann, M.V. Maseda, T.
Garel, N.F. Bouché, L. Wisotzki, Monthly Notices of the Royal Astronomical Society
529 (2024) 2794–2806.
corr_author: '1'
date_created: 2024-03-31T22:01:12Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2025-09-04T13:18:02Z
day: '01'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.1093/mnras/stae673
external_id:
arxiv:
- '2305.15346'
isi:
- '001188770300019'
file:
- access_level: open_access
checksum: 1e65c40a71e565eebdc4c5ff11822ba2
content_type: application/pdf
creator: dernst
date_created: 2024-04-02T08:42:17Z
date_updated: 2024-04-02T08:42:17Z
file_id: '15255'
file_name: 2024_MonthlyNRoyalAstronSoc_Matthee.pdf
file_size: 2626735
relation: main_file
success: 1
file_date_updated: 2024-04-02T08:42:17Z
has_accepted_license: '1'
intvolume: ' 529'
isi: 1
issue: '3'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 2794-2806
project:
- _id: bd9b2118-d553-11ed-ba76-db24564edfea
grant_number: '101076224'
name: Young galaxies as tracers and agents of cosmic reionization
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
eissn:
- 1365-2966
issn:
- 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Large-scale excess H I absorption around z ≈ 4 galaxies detected in a background
galaxy spectrum in the MUSE eXtremely deep field
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 529
year: '2024'
...
---
_id: '15250'
abstract:
- lang: eng
text: Orphan solute carrier (SLC) represents a group of membrane transporters whose
exact functions and substrate specificities are not known. Elucidating the function
and regulation of orphan SLC transporters is not only crucial for advancing our
knowledge of cellular and molecular biology but can potentially lead to the development
of new therapeutic strategies. Here, we provide evidence for the biological function
of a ubiquitous orphan lysosomal SLC, the Major Facilitator Superfamily Domain-containing
Protein 1 (MFSD1), which has remained phylogenetically unassigned. Targeted metabolomics
revealed that dipeptides containing either lysine or arginine residues accumulate
in lysosomes of cells lacking MFSD1. Whole-cell patch-clamp electrophysiological
recordings of HEK293-cells expressing MFSD1 on the cell surface displayed transport
affinities for positively charged dipeptides in the lower mM range, while dipeptides
that carry a negative net charge were not transported. This was also true for
single amino acids and tripeptides, which MFSD1 failed to transport. Our results
identify MFSD1 as a highly selective lysosomal lysine/arginine/histidine-containing
dipeptide exporter, which functions as a uniporter.
acknowledged_ssus:
- _id: Bio
acknowledgement: We thank the Metabolomics Facility at Vienna BioCenter Core Facilities,
which is a member of the Vienna BioCenter and funded by the City of Vienna through
the Vienna Business Agency (shared research facility), for the LC–MS/MS analysis;
and the BioImaging Facility at IST Austria for technical support and assistance.
The authors want to thank N. Kastner for help with the live cell imaging and A. Korošec for help with flow cytometry. This work was supported
by the Austrian Science Fund (FWF), grant P 36621- B (to M.R.), grant P 36667 (to
W.S.), and core funding from IST Austria (to D.S.).
article_number: e2319686121
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Danila
full_name: Boytsov, Danila
last_name: Boytsov
- first_name: Gregor M.
full_name: Madej, Gregor M.
last_name: Madej
- first_name: Georg
full_name: Horn, Georg
last_name: Horn
- first_name: Nadine
full_name: Blaha, Nadine
last_name: Blaha
- first_name: Thomas
full_name: Köcher, Thomas
last_name: Köcher
- first_name: Harald H.
full_name: Sitte, Harald H.
last_name: Sitte
- first_name: Daria E
full_name: Siekhaus, Daria E
id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
last_name: Siekhaus
orcid: 0000-0001-8323-8353
- first_name: Christine
full_name: Ziegler, Christine
last_name: Ziegler
- first_name: Walter
full_name: Sandtner, Walter
last_name: Sandtner
- first_name: Marko
full_name: Roblek, Marko
id: 3047D808-F248-11E8-B48F-1D18A9856A87
last_name: Roblek
orcid: 0000-0001-9588-1389
citation:
ama: Boytsov D, Madej GM, Horn G, et al. Orphan lysosomal solute carrier MFSD1 facilitates
highly selective dipeptide transport. Proceedings of the National Academy of
Sciences of the United States of America. 2024;121(13). doi:10.1073/pnas.2319686121
apa: Boytsov, D., Madej, G. M., Horn, G., Blaha, N., Köcher, T., Sitte, H. H., …
Roblek, M. (2024). Orphan lysosomal solute carrier MFSD1 facilitates highly selective
dipeptide transport. Proceedings of the National Academy of Sciences of the
United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2319686121
chicago: Boytsov, Danila, Gregor M. Madej, Georg Horn, Nadine Blaha, Thomas Köcher,
Harald H. Sitte, Daria E Siekhaus, Christine Ziegler, Walter Sandtner, and Marko
Roblek. “Orphan Lysosomal Solute Carrier MFSD1 Facilitates Highly Selective Dipeptide
Transport.” Proceedings of the National Academy of Sciences of the United States
of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2319686121.
ieee: D. Boytsov et al., “Orphan lysosomal solute carrier MFSD1 facilitates
highly selective dipeptide transport,” Proceedings of the National Academy
of Sciences of the United States of America, vol. 121, no. 13. National Academy
of Sciences, 2024.
ista: Boytsov D, Madej GM, Horn G, Blaha N, Köcher T, Sitte HH, Siekhaus DE, Ziegler
C, Sandtner W, Roblek M. 2024. Orphan lysosomal solute carrier MFSD1 facilitates
highly selective dipeptide transport. Proceedings of the National Academy of Sciences
of the United States of America. 121(13), e2319686121.
mla: Boytsov, Danila, et al. “Orphan Lysosomal Solute Carrier MFSD1 Facilitates
Highly Selective Dipeptide Transport.” Proceedings of the National Academy
of Sciences of the United States of America, vol. 121, no. 13, e2319686121,
National Academy of Sciences, 2024, doi:10.1073/pnas.2319686121.
short: D. Boytsov, G.M. Madej, G. Horn, N. Blaha, T. Köcher, H.H. Sitte, D.E. Siekhaus,
C. Ziegler, W. Sandtner, M. Roblek, Proceedings of the National Academy of Sciences
of the United States of America 121 (2024).
corr_author: '1'
date_created: 2024-03-31T22:01:12Z
date_published: 2024-03-26T00:00:00Z
date_updated: 2025-09-04T13:19:02Z
day: '26'
ddc:
- '570'
department:
- _id: DaSi
doi: 10.1073/pnas.2319686121
external_id:
isi:
- '001206419000003'
pmid:
- '38507452'
file:
- access_level: open_access
checksum: 06f9e60b1146a685d58bf33999422fa8
content_type: application/pdf
creator: dernst
date_created: 2024-04-02T08:54:28Z
date_updated: 2024-04-02T08:54:28Z
file_id: '15256'
file_name: 2024_PNAS_Boytsov.pdf
file_size: 2483787
relation: main_file
success: 1
file_date_updated: 2024-04-02T08:54:28Z
has_accepted_license: '1'
intvolume: ' 121'
isi: 1
issue: '13'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_identifier:
eissn:
- 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide
transport
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 121
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '15251'
abstract:
- lang: eng
text: Brassinosteroids are steroidal phytohormones that regulate plant development
and physiology, including adaptation to environmental stresses. Brassinosteroids
are synthesized in the cell interior but bind receptors at the cell surface, necessitating
a yet to be identified export mechanism. Here, we show that a member of the ATP-binding
cassette (ABC) transporter superfamily, ABCB19, functions as a brassinosteroid
exporter. We present its structure in both the substrate-unbound and the brassinosteroid-bound
states. Bioactive brassinosteroids are potent activators of ABCB19 ATP hydrolysis
activity, and transport assays showed that ABCB19 transports brassinosteroids.
In Arabidopsis thaliana, ABCB19 and its close homolog, ABCB1, positively regulate
brassinosteroid responses. Our results uncover an elusive export mechanism for
bioactive brassinosteroids that is tightly coordinated with brassinosteroid signaling.
acknowledgement: "We thank the Cryo-EM Center of the University of Science and Technology
of China for the EM facility support, Y. Yin (Iowa State University, Ames, IA, USA)
for providing the anti-BES1 antibody, Y. Gao and all other staff members for their
technical support on cryo-EM data collection, S. Vanneste (VIB, Ghent University,
Ghent, Belgium) for useful discussions, and M. De Cock for help in preparing the
manuscript.\r\nThis work was supported by the National Natural Science Foundation
of China (grants 31870732 and 32322041 to L.S., grant 31900885 to X.L., and grant
32321001 to L.S.); the Strategic Priority Research Program of the Chinese Academy
of Sciences (grant XDB37020103 to L.S.); the Natural Science Foundation of Anhui
Province (grant 2008085MC90 to X.L. and grant 2008085J15 to L.S.); Fundamental Research
Funds for the Central Universities (grant WK9100000031 to L.S.); USTC Research Funds
of the Double First-Class Initiative (grant YD9100002004 to L.S. and grant YD9100002020
to X.L.); Research Foundation-Flanders (grant G002121N to E.R. and postdoctoral
fellowships 12R7822N and 12R7819N to N.V.); and Chinese Scholarship Council predoctoral
fellowships (Y.W. and H.Z.). L.S. is supported by an Outstanding Young Scholar Award
from the Qiu Shi Science and Technologies Foundation and a Young Scholar Award from
the Cyrus Tang Foundation."
article_processing_charge: No
article_type: original
author:
- first_name: Wei
full_name: Ying, Wei
last_name: Ying
- first_name: Yaowei
full_name: Wang, Yaowei
last_name: Wang
- first_name: Hong
full_name: Wei, Hong
last_name: Wei
- first_name: Yongming
full_name: Luo, Yongming
last_name: Luo
- first_name: Qian
full_name: Ma, Qian
last_name: Ma
- first_name: Heyuan
full_name: Zhu, Heyuan
last_name: Zhu
- first_name: Hilde
full_name: Janssens, Hilde
last_name: Janssens
- first_name: Nemanja
full_name: Vukašinović, Nemanja
last_name: Vukašinović
- first_name: Miroslav
full_name: Kvasnica, Miroslav
last_name: Kvasnica
- first_name: Johan M.
full_name: Winne, Johan M.
last_name: Winne
- first_name: Yongxiang
full_name: Gao, Yongxiang
last_name: Gao
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Xin
full_name: Liu, Xin
last_name: Liu
- first_name: Eugenia
full_name: Russinova, Eugenia
last_name: Russinova
- first_name: Linfeng
full_name: Sun, Linfeng
last_name: Sun
citation:
ama: Ying W, Wang Y, Wei H, et al. Structure and function of the Arabidopsis ABC
transporter ABCB19 in brassinosteroid export. Science. 2024;383(6689):eadj4591.
doi:10.1126/science.adj4591
apa: Ying, W., Wang, Y., Wei, H., Luo, Y., Ma, Q., Zhu, H., … Sun, L. (2024). Structure
and function of the Arabidopsis ABC transporter ABCB19 in brassinosteroid export.
Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.adj4591
chicago: Ying, Wei, Yaowei Wang, Hong Wei, Yongming Luo, Qian Ma, Heyuan Zhu, Hilde
Janssens, et al. “Structure and Function of the Arabidopsis ABC Transporter ABCB19
in Brassinosteroid Export.” Science. American Association for the Advancement
of Science, 2024. https://doi.org/10.1126/science.adj4591.
ieee: W. Ying et al., “Structure and function of the Arabidopsis ABC transporter
ABCB19 in brassinosteroid export,” Science, vol. 383, no. 6689. American
Association for the Advancement of Science, p. eadj4591, 2024.
ista: Ying W, Wang Y, Wei H, Luo Y, Ma Q, Zhu H, Janssens H, Vukašinović N, Kvasnica
M, Winne JM, Gao Y, Tan S, Friml J, Liu X, Russinova E, Sun L. 2024. Structure
and function of the Arabidopsis ABC transporter ABCB19 in brassinosteroid export.
Science. 383(6689), eadj4591.
mla: Ying, Wei, et al. “Structure and Function of the Arabidopsis ABC Transporter
ABCB19 in Brassinosteroid Export.” Science, vol. 383, no. 6689, American
Association for the Advancement of Science, 2024, p. eadj4591, doi:10.1126/science.adj4591.
short: W. Ying, Y. Wang, H. Wei, Y. Luo, Q. Ma, H. Zhu, H. Janssens, N. Vukašinović,
M. Kvasnica, J.M. Winne, Y. Gao, S. Tan, J. Friml, X. Liu, E. Russinova, L. Sun,
Science 383 (2024) eadj4591.
date_created: 2024-03-31T22:01:12Z
date_published: 2024-03-22T00:00:00Z
date_updated: 2025-09-04T13:19:48Z
day: '22'
department:
- _id: JiFr
doi: 10.1126/science.adj4591
external_id:
isi:
- '001252955200028'
pmid:
- '38513023'
intvolume: ' 383'
isi: 1
issue: '6689'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://hdl.handle.net/1854/LU-01HTMBK3P3PPNB73YFCMFXP3ZZ
month: '03'
oa: 1
oa_version: Submitted Version
page: eadj4591
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structure and function of the Arabidopsis ABC transporter ABCB19 in brassinosteroid
export
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 383
year: '2024'
...
---
_id: '15252'
abstract:
- lang: eng
text: A measurable map between measure spaces is shown to have bounded compression
if and only if its image via the measure-algebra functor is Lipschitz-continuous
w.r.t. the measure-algebra distances. This provides a natural interpretation of
maps of bounded compression/deformation by means of the measure-algebra functor
and corrobo-rates the assertion that maps of bounded deformation are a natural
class of morphisms for the category of complete and separable metric measure spaces.
acknowledgement: "The author gratefully acknowledges funding of his current position
by the Austrian Science\r\nFund (FWF), grant ESPRIT208. He is grateful to Enrico
Pasqualetto for pointing out some\r\nreferences on maps of bounded compression."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lorenzo
full_name: Dello Schiavo, Lorenzo
id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
last_name: Dello Schiavo
orcid: 0000-0002-9881-6870
citation:
ama: Dello Schiavo L. A characterization of maps of bounded compression. Mathematical
Communications. 2024;29(1):137-142.
apa: Dello Schiavo, L. (2024). A characterization of maps of bounded compression.
Mathematical Communications. Udruga Matematicara Osijek.
chicago: Dello Schiavo, Lorenzo. “A Characterization of Maps of Bounded Compression.”
Mathematical Communications. Udruga Matematicara Osijek, 2024.
ieee: L. Dello Schiavo, “A characterization of maps of bounded compression,” Mathematical
Communications, vol. 29, no. 1. Udruga Matematicara Osijek, pp. 137–142, 2024.
ista: Dello Schiavo L. 2024. A characterization of maps of bounded compression.
Mathematical Communications. 29(1), 137–142.
mla: Dello Schiavo, Lorenzo. “A Characterization of Maps of Bounded Compression.”
Mathematical Communications, vol. 29, no. 1, Udruga Matematicara Osijek,
2024, pp. 137–42.
short: L. Dello Schiavo, Mathematical Communications 29 (2024) 137–142.
corr_author: '1'
date_created: 2024-03-31T22:01:12Z
date_published: 2024-01-01T00:00:00Z
date_updated: 2025-04-14T12:59:08Z
day: '01'
department:
- _id: JaMa
external_id:
arxiv:
- '2304.11348'
intvolume: ' 29'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2304.11348
month: '01'
oa: 1
oa_version: Preprint
page: 137-142
project:
- _id: 34dbf174-11ca-11ed-8bc3-afe9d43d4b9c
grant_number: E208
name: Configuration Spaces over Non-Smooth Spaces
publication: Mathematical Communications
publication_identifier:
eissn:
- 1848-8013
issn:
- 1331-0623
publication_status: published
publisher: Udruga Matematicara Osijek
quality_controlled: '1'
scopus_import: '1'
status: public
title: A characterization of maps of bounded compression
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2024'
...
---
_id: '15253'
abstract:
- lang: eng
text: "We study the problem of maintaining a differentially private decaying sum
under continual observation. We give a unifying framework and an efficient algorithm
for this problem for any sufficiently smooth function. Our algorithm is the first
differentially private algorithm that does not have a multiplicative error for
polynomially decaying weights. Our algorithm improves on all prior works on differentially
private decaying sums under continual observation and recovers exactly the additive
error for the special case of continual counting from Henzinger et al. (SODA 2023)
as a corollary.\r\nOur algorithm is a variant of the matrix mechanism whose error
depends on the γ2 and γF norm of the underlying matrix. We give a constructive
proof for an almost exact upper bound on the γ2 and γF norm and an almost tight
lower bound on the γ2 norm for a large class of lower-triangular matrices. This
is the first non-trivial lower bound for lower-triangular matrices whose non-zero
entries are not all the same. It includes matrices for all continual decaying
sums problems, resulting in an upper bound on the additive error of any differentially
private decaying sums algorithm under continual observation.\r\nWe also explore
some implications of our result in discrepancy theory and operator algebra. Given
the importance of the γ2 norm in computer science and the extensive work in mathematics,
we believe our result will have further applications."
acknowledgement: This project has received funding from the European Research Council (ERC)under
the European Union’s Horizon 2020 research and innovation programme (Grant agreement
No.101019564 “The Design of Modern Fully Dynamic Data Structures (MoDynStruct)”
and the AustrianScience Fund (FWF) project Z 422-N, project “Static and Dynamic
Hierarchical Graph Decompositions”, I 5982-N, andproject “Fast Algorithms for a
Reactive Network Layer (ReactNet)”, P 33775-N, with additional funding from the
netideeSCIENCE Stiftung, 2020–2024. JU’s research was funded by the Decanal Research Grant. We thank the anonymousreviewers
for their useful feedback and pointing us to the results in Matousek et al
article_processing_charge: No
arxiv: 1
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Jalaj
full_name: Upadhyay, Jalaj
last_name: Upadhyay
- first_name: Sarvagya
full_name: Upadhyay, Sarvagya
last_name: Upadhyay
citation:
ama: 'Henzinger M, Upadhyay J, Upadhyay S. A unifying framework for differentially
private sums under continual observation. In: Proceedings of the 2024 Annual
ACM-SIAM Symposium on Discrete Algorithms. Vol 2024. Society for Industrial
and Applied Mathematics; 2024:995-1018. doi:10.1137/1.9781611977912.38'
apa: 'Henzinger, M., Upadhyay, J., & Upadhyay, S. (2024). A unifying framework
for differentially private sums under continual observation. In Proceedings
of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms (Vol. 2024, pp.
995–1018). Alexandria, VA, United States: Society for Industrial and Applied Mathematics.
https://doi.org/10.1137/1.9781611977912.38'
chicago: Henzinger, Monika, Jalaj Upadhyay, and Sarvagya Upadhyay. “A Unifying Framework
for Differentially Private Sums under Continual Observation.” In Proceedings
of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms, 2024:995–1018.
Society for Industrial and Applied Mathematics, 2024. https://doi.org/10.1137/1.9781611977912.38.
ieee: M. Henzinger, J. Upadhyay, and S. Upadhyay, “A unifying framework for differentially
private sums under continual observation,” in Proceedings of the 2024 Annual
ACM-SIAM Symposium on Discrete Algorithms, Alexandria, VA, United States,
2024, vol. 2024, pp. 995–1018.
ista: 'Henzinger M, Upadhyay J, Upadhyay S. 2024. A unifying framework for differentially
private sums under continual observation. Proceedings of the 2024 Annual ACM-SIAM
Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms vol.
2024, 995–1018.'
mla: Henzinger, Monika, et al. “A Unifying Framework for Differentially Private
Sums under Continual Observation.” Proceedings of the 2024 Annual ACM-SIAM
Symposium on Discrete Algorithms, vol. 2024, Society for Industrial and Applied
Mathematics, 2024, pp. 995–1018, doi:10.1137/1.9781611977912.38.
short: M. Henzinger, J. Upadhyay, S. Upadhyay, in:, Proceedings of the 2024 Annual
ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied
Mathematics, 2024, pp. 995–1018.
conference:
end_date: 2024-01-10
location: Alexandria, VA, United States
name: 'SODA: Symposium on Discrete Algorithms'
start_date: 2024-01-07
corr_author: '1'
date_created: 2024-03-31T22:01:13Z
date_published: 2024-01-04T00:00:00Z
date_updated: 2025-04-14T13:50:49Z
day: '04'
department:
- _id: MoHe
doi: 10.1137/1.9781611977912.38
ec_funded: 1
external_id:
arxiv:
- '2307.08970'
intvolume: ' 2024'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2307.08970
month: '01'
oa: 1
oa_version: Preprint
page: 995-1018
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
call_identifier: H2020
grant_number: '101019564'
name: The design and evaluation of modern fully dynamic data structures
- _id: 34def286-11ca-11ed-8bc3-da5948e1613c
grant_number: Z00422
name: Efficient algorithms
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
grant_number: I05982
name: Static and Dynamic Hierarchical Graph Decompositions
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
grant_number: P33775
name: Fast Algorithms for a Reactive Network Layer
publication: Proceedings of the 2024 Annual ACM-SIAM Symposium on Discrete Algorithms
publication_identifier:
eisbn:
- '9781611977912'
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: A unifying framework for differentially private sums under continual observation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2024
year: '2024'
...
---
DOAJ_listed: '1'
_id: '15257'
abstract:
- lang: eng
text: Root gravitropic bending represents a fundamental aspect of terrestrial plant
physiology. Gravity is perceived by sedimentation of starch-rich plastids (statoliths)
to the bottom of the central root cap cells. Following gravity perception, intercellular
auxin transport is redirected downwards leading to an asymmetric auxin accumulation
at the lower root side causing inhibition of cell expansion, ultimately resulting
in downwards bending. How gravity-induced statoliths repositioning is translated
into asymmetric auxin distribution remains unclear despite PIN auxin efflux carriers
and the Negative Gravitropic Response of roots (NGR) proteins polarize along statolith
sedimentation, thus providing a plausible mechanism for auxin flow redirection.
In this study, using a functional NGR1-GFP construct, we visualized the NGR1 localization
on the statolith surface and plasma membrane (PM) domains in close proximity to
the statoliths, correlating with their movements. We determined that NGR1 binding
to these PM domains is indispensable for NGR1 functionality and relies on cysteine
acylation and adjacent polybasic regions as well as on lipid and sterol PM composition.
Detailed timing of the early events following graviperception suggested that both
NGR1 repolarization and initial auxin asymmetry precede the visible PIN3 polarization.
This discrepancy motivated us to unveil a rapid, NGR-dependent translocation of
PIN-activating AGCVIII kinase D6PK towards lower PMs of gravity-perceiving cells,
thus providing an attractive model for rapid redirection of auxin fluxes following
gravistimulation.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
acknowledgement: 'The research leading to these results has received funding from
the European Research Council (ERC) under the European Union’s Horizon 2020 research
and innovation programme grant agreement No 742985 and Austrian Science Fund (FWF):
I3630-775 B25 to J.F. This research was also supported by the Lab Support Facility
(LSF) and the Imaging and Optics Facility (IOF) of IST Austria, namely Tereza Bělinová
for her help with the imaging. JS was supported by FemTECH fellowship.'
article_number: '91523'
article_processing_charge: Yes
article_type: original
author:
- first_name: Ivan
full_name: Kulich, Ivan
id: 57a1567c-8314-11eb-9063-c9ddc3451a54
last_name: Kulich
- first_name: Julia
full_name: Schmid, Julia
id: 07cf4637-baaf-11ee-9227-e1de57d1d69b
last_name: Schmid
- first_name: Anastasiia
full_name: Teplova, Anastasiia
id: e3736151-106c-11ec-b916-c2558e2762c6
last_name: Teplova
- first_name: Linlin
full_name: Qi, Linlin
id: 44B04502-A9ED-11E9-B6FC-583AE6697425
last_name: Qi
orcid: 0000-0001-5187-8401
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Kulich I, Schmid J, Teplova A, Qi L, Friml J. Rapid translocation of NGR proteins
driving polarization of PIN-activating D6 protein kinase during root gravitropism.
eLife. 2024;12. doi:10.7554/elife.91523
apa: Kulich, I., Schmid, J., Teplova, A., Qi, L., & Friml, J. (2024). Rapid
translocation of NGR proteins driving polarization of PIN-activating D6 protein
kinase during root gravitropism. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.91523
chicago: Kulich, Ivan, Julia Schmid, Anastasiia Teplova, Linlin Qi, and Jiří Friml.
“Rapid Translocation of NGR Proteins Driving Polarization of PIN-Activating D6
Protein Kinase during Root Gravitropism.” ELife. eLife Sciences Publications,
2024. https://doi.org/10.7554/elife.91523.
ieee: I. Kulich, J. Schmid, A. Teplova, L. Qi, and J. Friml, “Rapid translocation
of NGR proteins driving polarization of PIN-activating D6 protein kinase during
root gravitropism,” eLife, vol. 12. eLife Sciences Publications, 2024.
ista: Kulich I, Schmid J, Teplova A, Qi L, Friml J. 2024. Rapid translocation of
NGR proteins driving polarization of PIN-activating D6 protein kinase during root
gravitropism. eLife. 12, 91523.
mla: Kulich, Ivan, et al. “Rapid Translocation of NGR Proteins Driving Polarization
of PIN-Activating D6 Protein Kinase during Root Gravitropism.” ELife, vol.
12, 91523, eLife Sciences Publications, 2024, doi:10.7554/elife.91523.
short: I. Kulich, J. Schmid, A. Teplova, L. Qi, J. Friml, ELife 12 (2024).
corr_author: '1'
date_created: 2024-04-02T11:35:58Z
date_published: 2024-03-05T00:00:00Z
date_updated: 2025-04-23T07:45:02Z
day: '05'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.7554/elife.91523
ec_funded: 1
external_id:
pmid:
- '38441122'
file:
- access_level: open_access
checksum: a73a84d3bf97a6d09d24308ca6dd0a0c
content_type: application/pdf
creator: dernst
date_created: 2024-04-03T13:18:00Z
date_updated: 2024-04-03T13:18:00Z
file_id: '15288'
file_name: 2024_eLife_Kulich.pdf
file_size: 11451904
relation: main_file
success: 1
file_date_updated: 2024-04-03T13:18:00Z
has_accepted_license: '1'
intvolume: ' 12'
keyword:
- General Immunology and Microbiology
- General Biochemistry
- Genetics and Molecular Biology
- General Medicine
- General Neuroscience
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
publication: eLife
publication_identifier:
issn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
related_material:
link:
- description: News on ISTA website
relation: press_release
url: https://ista.ac.at/en/news/beneath-the-surface/
scopus_import: '1'
status: public
title: Rapid translocation of NGR proteins driving polarization of PIN-activating
D6 protein kinase during root gravitropism
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '15258'
abstract:
- lang: eng
text: Inclusion at academic events is facing increased scrutiny as the communities
these events serve raise their expectations for who can practically attend. Active
efforts in recent years to bring more diversity to academic events have brought
progress and created momentum. However, we must reflect on these efforts and determine
which underrepresented groups are being disadvantaged. Inclusion at academic events
is important to ensure diversity of discourse and opinion, to help build networks,
and to avoid academic siloing. All of these contribute to the development of a
robust and resilient academic field. We have developed these Ten Simple Rules
both to amplify the voices that have been speaking out and to celebrate the progress
of many Equity, Diversity, and Inclusivity practices that continue to drive the
organisation of academic events. The Rules aim to raise awareness as well as provide
actionable suggestions and tools to support these initiatives further. This aims
to support academic organisations such as the Deep Learning Indaba, Neuromatch
Academy, the IBRO-Simons Computational Neuroscience Imbizo, Biodiversity Information
Standards (TDWG), Arabs in Neuroscience, FAIRPoints, and OLS (formerly Open Life
Science). This article is a call to action for organisers to reevaluate the impact
and reach of their inclusive practices.
acknowledgement: "We would like to recognise the feedback and ideas shared with us
by all attendees during the\r\nfocus groups that contributed to the development
of this paper. Acknowledgements are given\r\nto Elisee Jafsia, Umar Farouk Ahmad,
Zohra Slim, Mizanur Rahman, Rev. Katie Tupling,\r\nChristopher Emmanuel, Abdalrhman
Mostafa, Pradeep Eranti, Toby Hodges, Avishkar\r\nBhoopchand, and Carolyn Dickson.
We would like to thank our community members and\r\nacknowledge their bravery for
sharing their stories that shaped the narrative of these Ten Simple\r\nRules. The
stories shared with us formed the case studies, and while they are anonymous\r\nfor
privacy and protection reasons, it is these stories that were on our mind during
the entire\r\nprocess and kept us going. We acknowledge the efforts of the organisers
that contribute to the\r\nhighly successful events that are the inspiration for
the ideas presented here: the Deep\r\nLearning Indaba, Neuromatch Academy, the IBRO
Simons Computational Neuroscience\r\nImbizo, and OLS. OLS also supported this project
through their mentorship programme,\r\nOpen Seeds."
article_number: e1011797
article_processing_charge: Yes
article_type: original
author:
- first_name: Siobhan Mackenzie
full_name: Hall, Siobhan Mackenzie
last_name: Hall
- first_name: Daniel
full_name: Kochin, Daniel
last_name: Kochin
- first_name: Carmel
full_name: Carne, Carmel
last_name: Carne
- first_name: Patricia
full_name: Herterich, Patricia
last_name: Herterich
- first_name: Kristen Lenay
full_name: Lewers, Kristen Lenay
last_name: Lewers
- first_name: Mohamed
full_name: Abdelhack, Mohamed
last_name: Abdelhack
- first_name: Arun
full_name: Ramasubramanian, Arun
last_name: Ramasubramanian
- first_name: Juno Felecia
full_name: Michael Alphonse, Juno Felecia
last_name: Michael Alphonse
- first_name: Visotheary
full_name: Ung, Visotheary
last_name: Ung
- first_name: Sara
full_name: El-Gebali, Sara
last_name: El-Gebali
- first_name: Christopher
full_name: Currin, Christopher
id: e8321fc5-3091-11eb-8a53-83f309a11ac9
last_name: Currin
orcid: 0000-0002-4809-5059
- first_name: Esther
full_name: Plomp, Esther
last_name: Plomp
- first_name: Rachel
full_name: Thompson, Rachel
last_name: Thompson
- first_name: Malvika
full_name: Sharan, Malvika
last_name: Sharan
citation:
ama: Hall SM, Kochin D, Carne C, et al. Ten simple rules for pushing boundaries
of inclusion at academic events. PLOS Computational Biology. 2024;20(3).
doi:10.1371/journal.pcbi.1011797
apa: Hall, S. M., Kochin, D., Carne, C., Herterich, P., Lewers, K. L., Abdelhack,
M., … Sharan, M. (2024). Ten simple rules for pushing boundaries of inclusion
at academic events. PLOS Computational Biology. Public Library of Science.
https://doi.org/10.1371/journal.pcbi.1011797
chicago: Hall, Siobhan Mackenzie, Daniel Kochin, Carmel Carne, Patricia Herterich,
Kristen Lenay Lewers, Mohamed Abdelhack, Arun Ramasubramanian, et al. “Ten Simple
Rules for Pushing Boundaries of Inclusion at Academic Events.” PLOS Computational
Biology. Public Library of Science, 2024. https://doi.org/10.1371/journal.pcbi.1011797.
ieee: S. M. Hall et al., “Ten simple rules for pushing boundaries of inclusion
at academic events,” PLOS Computational Biology, vol. 20, no. 3. Public
Library of Science, 2024.
ista: Hall SM, Kochin D, Carne C, Herterich P, Lewers KL, Abdelhack M, Ramasubramanian
A, Michael Alphonse JF, Ung V, El-Gebali S, Currin C, Plomp E, Thompson R, Sharan
M. 2024. Ten simple rules for pushing boundaries of inclusion at academic events.
PLOS Computational Biology. 20(3), e1011797.
mla: Hall, Siobhan Mackenzie, et al. “Ten Simple Rules for Pushing Boundaries of
Inclusion at Academic Events.” PLOS Computational Biology, vol. 20, no.
3, e1011797, Public Library of Science, 2024, doi:10.1371/journal.pcbi.1011797.
short: S.M. Hall, D. Kochin, C. Carne, P. Herterich, K.L. Lewers, M. Abdelhack,
A. Ramasubramanian, J.F. Michael Alphonse, V. Ung, S. El-Gebali, C. Currin, E.
Plomp, R. Thompson, M. Sharan, PLOS Computational Biology 20 (2024).
date_created: 2024-04-02T11:37:32Z
date_published: 2024-03-01T00:00:00Z
date_updated: 2025-09-04T13:24:19Z
day: '01'
ddc:
- '000'
department:
- _id: TiVo
doi: 10.1371/journal.pcbi.1011797
external_id:
isi:
- '001181690200005'
pmid:
- '38427633'
file:
- access_level: open_access
checksum: 1f0f837c5b4341f54f6347370ed8c1b7
content_type: application/pdf
creator: dernst
date_created: 2024-04-03T13:29:36Z
date_updated: 2024-04-03T13:29:36Z
file_id: '15289'
file_name: 2024_PloS_Hall.pdf
file_size: 858521
relation: main_file
success: 1
file_date_updated: 2024-04-03T13:29:36Z
has_accepted_license: '1'
intvolume: ' 20'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS Computational Biology
publication_identifier:
issn:
- 1553-7358
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ten simple rules for pushing boundaries of inclusion at academic events
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 20
year: '2024'
...
---
DOAJ_listed: '1'
OA_type: gold
_id: '15295'
abstract:
- lang: eng
text: "Background: Benzodiazepines and antidepressants are effective agents for
the treatment of generalized anxiety disorder (GAD), with the HAM-A frequently
used as a primary outcome measure. The GAD literature is inconsistent regarding
which medications are more effective for somatic versus psychic symptoms of GAD,
and treatment guidelines do not advocate for prescribing based on subtype. This
meta-analysis aimed to determine whether benzodiazepines and antidepressants have
a differential impact on the somatic versus psychic subscales of the HAM-A in
GAD.\r\n\r\nMethods: An electronic search was undertaken for randomized controlled
trials of either benzodiazepines or antidepressants for GAD that reported treatment
response using the HAM-A subscales. Data were extracted by independent reviewers.
A random effects assessment of weighted mean difference with 95% confidence intervals
and subgroup difference was applied. All analysis was done on SPSS 26. An assessment
of bias, and of quality of evidence was performed.\r\n\r\nResults: 24 randomized
controlled trials met the inclusion criteria: 18 antidepressant trials, 5 benzodiazepine
trials and 1 of both. 14 studies were assessed as having between some and high
risk of bias, while 10 were assessed as having low risk of bias. Benzodiazepines
(WMD of 1.81 [CI 1.03, 2.58]) were significantly more effective than antidepressants
(WMD of 0.83 [CI 0.64, 1.02]) for reducing somatic symptoms of GAD (Chi2 = 5.81,
p = 0.02), and were also more effective (WMD of 2.46 [CI 1.83, 3.09]) in reducing
psychic symptoms than antidepressants (WMD of 1.83 [CI 1.55, 2.10]), although
this comparison did not reach statistical significance (Chi2 = 3.31, p = 0.07).\r\n\r\nConclusion:
The finding that benzodiazepines were significantly more effective than antidepressants
for somatic symptoms needs to be weighed up against potential benefits of antidepressants
over benzodiazepines. It may be useful for future treatment guidelines for GAD
to explicitly consider symptom subtype."
article_number: '152479'
article_processing_charge: Yes
article_type: original
author:
- first_name: Chad
full_name: Beyer, Chad
last_name: Beyer
- first_name: Christopher
full_name: Currin, Christopher
id: e8321fc5-3091-11eb-8a53-83f309a11ac9
last_name: Currin
orcid: 0000-0002-4809-5059
- first_name: Taryn
full_name: Williams, Taryn
last_name: Williams
- first_name: Dan J.
full_name: Stein, Dan J.
last_name: Stein
citation:
ama: Beyer C, Currin C, Williams T, Stein DJ. Meta-analysis of the comparative efficacy
of benzodiazepines and antidepressants for psychic versus somatic symptoms of
generalized anxiety disorder. Comprehensive Psychiatry. 2024;132. doi:10.1016/j.comppsych.2024.152479
apa: Beyer, C., Currin, C., Williams, T., & Stein, D. J. (2024). Meta-analysis
of the comparative efficacy of benzodiazepines and antidepressants for psychic
versus somatic symptoms of generalized anxiety disorder. Comprehensive Psychiatry.
Elsevier. https://doi.org/10.1016/j.comppsych.2024.152479
chicago: Beyer, Chad, Christopher Currin, Taryn Williams, and Dan J. Stein. “Meta-Analysis
of the Comparative Efficacy of Benzodiazepines and Antidepressants for Psychic
versus Somatic Symptoms of Generalized Anxiety Disorder.” Comprehensive Psychiatry.
Elsevier, 2024. https://doi.org/10.1016/j.comppsych.2024.152479.
ieee: C. Beyer, C. Currin, T. Williams, and D. J. Stein, “Meta-analysis of the comparative
efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms
of generalized anxiety disorder,” Comprehensive Psychiatry, vol. 132. Elsevier,
2024.
ista: Beyer C, Currin C, Williams T, Stein DJ. 2024. Meta-analysis of the comparative
efficacy of benzodiazepines and antidepressants for psychic versus somatic symptoms
of generalized anxiety disorder. Comprehensive Psychiatry. 132, 152479.
mla: Beyer, Chad, et al. “Meta-Analysis of the Comparative Efficacy of Benzodiazepines
and Antidepressants for Psychic versus Somatic Symptoms of Generalized Anxiety
Disorder.” Comprehensive Psychiatry, vol. 132, 152479, Elsevier, 2024,
doi:10.1016/j.comppsych.2024.152479.
short: C. Beyer, C. Currin, T. Williams, D.J. Stein, Comprehensive Psychiatry 132
(2024).
date_created: 2024-04-07T22:00:55Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-09-04T13:30:08Z
day: '01'
ddc:
- '570'
department:
- _id: TiVo
doi: 10.1016/j.comppsych.2024.152479
external_id:
isi:
- '001221136000001'
pmid:
- '38564872'
file:
- access_level: open_access
checksum: aadb57448b5f170761ed72cbcc31ba16
content_type: application/pdf
creator: dernst
date_created: 2025-01-13T10:47:20Z
date_updated: 2025-01-13T10:47:20Z
file_id: '18839'
file_name: 2024_ComprehensivePsychiatry_Beyer.pdf
file_size: 2874425
relation: main_file
success: 1
file_date_updated: 2025-01-13T10:47:20Z
has_accepted_license: '1'
intvolume: ' 132'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Comprehensive Psychiatry
publication_identifier:
eissn:
- 1532-8384
issn:
- 0010-440X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Meta-analysis of the comparative efficacy of benzodiazepines and antidepressants
for psychic versus somatic symptoms of generalized anxiety disorder
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 132
year: '2024'
...
---
_id: '15296'
abstract:
- lang: eng
text: In this paper we build a constructive algorithm that returns a rectifiable
curve that connects two points in a weakly convex set in a Hilbert space. We have
proven that this algorithm converges and obtained an estimate on the curve’s length
and compare the length of the curve obtained to known results.
article_number: '080002'
article_processing_charge: No
author:
- first_name: Mariana
full_name: Lopushanski, Mariana
last_name: Lopushanski
- first_name: Grigory
full_name: Ivanov, Grigory
id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
last_name: Ivanov
citation:
ama: 'Lopushanski M, Ivanov G. A constructive algorithm for building rectifiable
curves in weakly convex sets. In: AIP Conference Proceedings. Vol 3030.
AIP Publishing; 2024. doi:10.1063/5.0195908'
apa: 'Lopushanski, M., & Ivanov, G. (2024). A constructive algorithm for building
rectifiable curves in weakly convex sets. In AIP Conference Proceedings
(Vol. 3030). Virtual: AIP Publishing. https://doi.org/10.1063/5.0195908'
chicago: Lopushanski, Mariana, and Grigory Ivanov. “A Constructive Algorithm for
Building Rectifiable Curves in Weakly Convex Sets.” In AIP Conference Proceedings,
Vol. 3030. AIP Publishing, 2024. https://doi.org/10.1063/5.0195908.
ieee: M. Lopushanski and G. Ivanov, “A constructive algorithm for building rectifiable
curves in weakly convex sets,” in AIP Conference Proceedings, Virtual,
2024, vol. 3030, no. 1.
ista: 'Lopushanski M, Ivanov G. 2024. A constructive algorithm for building rectifiable
curves in weakly convex sets. AIP Conference Proceedings. ICCMSE: International
Conference of Computational Methods in Sciences and Engiineering vol. 3030, 080002.'
mla: Lopushanski, Mariana, and Grigory Ivanov. “A Constructive Algorithm for Building
Rectifiable Curves in Weakly Convex Sets.” AIP Conference Proceedings,
vol. 3030, no. 1, 080002, AIP Publishing, 2024, doi:10.1063/5.0195908.
short: M. Lopushanski, G. Ivanov, in:, AIP Conference Proceedings, AIP Publishing,
2024.
conference:
end_date: 2022-10-29
location: Virtual
name: 'ICCMSE: International Conference of Computational Methods in Sciences and
Engiineering'
start_date: 2022-10-26
date_created: 2024-04-07T22:00:55Z
date_published: 2024-03-14T00:00:00Z
date_updated: 2024-04-08T07:40:53Z
day: '14'
department:
- _id: UlWa
doi: 10.1063/5.0195908
intvolume: ' 3030'
issue: '1'
language:
- iso: eng
month: '03'
oa_version: None
publication: AIP Conference Proceedings
publication_identifier:
eissn:
- 1551-7616
issn:
- 0094-243X
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: A constructive algorithm for building rectifiable curves in weakly convex sets
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3030
year: '2024'
...
---
_id: '15301'
abstract:
- lang: eng
text: Plant morphogenesis relies exclusively on oriented cell expansion and division.
Nonetheless, the mechanism(s) determining division plane orientation remain elusive.
Here, we studied tissue healing after laser-assisted wounding in roots of Arabidopsis
thaliana and uncovered how mechanical forces stabilize and reorient the microtubule
cytoskeleton for the orientation of cell division. We identified that root tissue
functions as an interconnected cell matrix, with a radial gradient of tissue extendibility
causing predictable tissue deformation after wounding. This deformation causes
instant redirection of expansion in the surrounding cells and reorientation of
microtubule arrays, ultimately predicting cell division orientation. Microtubules
are destabilized under low tension, whereas stretching of cells, either through
wounding or external aspiration, immediately induces their polymerization. The
higher microtubule abundance in the stretched cell parts leads to the reorientation
of microtubule arrays and, ultimately, informs cell division planes. This provides
a long-sought mechanism for flexible re-arrangement of cell divisions by mechanical
forces for tissue reconstruction and plant architecture.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: We are thankful to Simon Gilroy, Alexander Jones, and Lieven De Veylder
for sharing published material. We thank the Imaging & Optics and Life Science Facilities
at IST Austria, the Biooptics facility at GMI, and the Cellular Imaging Facility
at DBMV UNIL for providing invaluable assistance. The research leading to these
results has received funding from the European Research Council under the European
Union's Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement no. 742985,
from the FWF under the stand-alone grant P29988, and from EMBO (ALTF 253-2023).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Lukas
full_name: Hörmayer, Lukas
id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
last_name: Hörmayer
orcid: 0000-0001-8295-2926
- first_name: Juan C
full_name: Montesinos López, Juan C
id: 310A8E3E-F248-11E8-B48F-1D18A9856A87
last_name: Montesinos López
orcid: 0000-0001-9179-6099
- first_name: N
full_name: Trozzi, N
last_name: Trozzi
- first_name: Leonhard
full_name: Spona, Leonhard
id: b52391fb-f636-11ee-939c-8a8c47552e8a
last_name: Spona
- first_name: Saiko
full_name: Yoshida, Saiko
id: 2E46069C-F248-11E8-B48F-1D18A9856A87
last_name: Yoshida
- first_name: Petra
full_name: Marhavá, Petra
id: 44E59624-F248-11E8-B48F-1D18A9856A87
last_name: Marhavá
- first_name: Silvia
full_name: Caballero Mancebo, Silvia
id: 2F1E1758-F248-11E8-B48F-1D18A9856A87
last_name: Caballero Mancebo
orcid: 0000-0002-5223-3346
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
- first_name: Y
full_name: Dagdas, Y
last_name: Dagdas
- first_name: M
full_name: Majda, M
last_name: Majda
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Hörmayer L, Montesinos López JC, Trozzi N, et al. Mechanical forces in plant
tissue matrix orient cell divisions via microtubule stabilization. Developmental
Cell. 2024;59(10):1333-1344.e4. doi:10.1016/j.devcel.2024.03.009
apa: Hörmayer, L., Montesinos López, J. C., Trozzi, N., Spona, L., Yoshida, S.,
Marhavá, P., … Friml, J. (2024). Mechanical forces in plant tissue matrix orient
cell divisions via microtubule stabilization. Developmental Cell. Elsevier.
https://doi.org/10.1016/j.devcel.2024.03.009
chicago: Hörmayer, Lukas, Juan C Montesinos López, N Trozzi, Leonhard Spona, Saiko
Yoshida, Petra Marhavá, Silvia Caballero Mancebo, et al. “Mechanical Forces in
Plant Tissue Matrix Orient Cell Divisions via Microtubule Stabilization.” Developmental
Cell. Elsevier, 2024. https://doi.org/10.1016/j.devcel.2024.03.009.
ieee: L. Hörmayer et al., “Mechanical forces in plant tissue matrix orient
cell divisions via microtubule stabilization,” Developmental Cell, vol.
59, no. 10. Elsevier, p. 1333–1344.e4, 2024.
ista: Hörmayer L, Montesinos López JC, Trozzi N, Spona L, Yoshida S, Marhavá P,
Caballero Mancebo S, Benková E, Heisenberg C-PJ, Dagdas Y, Majda M, Friml J. 2024.
Mechanical forces in plant tissue matrix orient cell divisions via microtubule
stabilization. Developmental Cell. 59(10), 1333–1344.e4.
mla: Hörmayer, Lukas, et al. “Mechanical Forces in Plant Tissue Matrix Orient Cell
Divisions via Microtubule Stabilization.” Developmental Cell, vol. 59,
no. 10, Elsevier, 2024, p. 1333–1344.e4, doi:10.1016/j.devcel.2024.03.009.
short: L. Hörmayer, J.C. Montesinos López, N. Trozzi, L. Spona, S. Yoshida, P. Marhavá,
S. Caballero Mancebo, E. Benková, C.-P.J. Heisenberg, Y. Dagdas, M. Majda, J.
Friml, Developmental Cell 59 (2024) 1333–1344.e4.
corr_author: '1'
date_created: 2024-04-08T12:07:57Z
date_published: 2024-05-20T00:00:00Z
date_updated: 2025-09-04T13:32:08Z
day: '20'
ddc:
- '570'
department:
- _id: JiFr
- _id: EvBe
- _id: CaHe
doi: 10.1016/j.devcel.2024.03.009
ec_funded: 1
external_id:
isi:
- '001301584600001'
pmid:
- '38579717'
file:
- access_level: open_access
checksum: 22b374fb50a40d380b7686c84258d271
content_type: application/pdf
creator: dernst
date_created: 2024-08-20T11:22:16Z
date_updated: 2024-08-20T11:22:16Z
file_id: '17452'
file_name: 2024_DevelopmentalCell_Hoermayer.pdf
file_size: 5195262
relation: main_file
success: 1
file_date_updated: 2024-08-20T11:22:16Z
has_accepted_license: '1'
intvolume: ' 59'
isi: 1
issue: '10'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1333-1344.e4
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 262EF96E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P29988
name: RNA-directed DNA methylation in plant development
publication: Developmental Cell
publication_identifier:
eissn:
- 1878-1551
issn:
- 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
link:
- description: News on ISTA website
relation: press_release
url: https://ista.ac.at/en/news/how-plants-heal-wounds/
scopus_import: '1'
status: public
title: Mechanical forces in plant tissue matrix orient cell divisions via microtubule
stabilization
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 59
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '15313'
abstract:
- lang: eng
text: Our goal is to investigate fundamental properties of the system of internally
cooled convection. The system consists of an upward thermal flux at the lower
boundary, a mean temperature lapse-rate and a constant cooling term in the bulk
with the bulk cooling in thermal equilibrium with the input heat flux. This simple
model represents idealised dry convection in the atmospheric boundary layer, where
the cooling mimics the radiative cooling to space notably through longwave radiation.
We perform linear stability analysis of the model for different values of the
mean stratification to derive the critical forcing above which the fluid is convectively
unstable to small perturbations. The dynamic behavior of the fluid system is described
and the scaling of various important measured quantities such as the total vertical
convective heat flux and the upward mass flux is measured. We introduce a lapse-rate
dependent dimensionless Rayleigh-number Ray that determines the behavior of the
system, finding that the convective heat-flux and mass-flux scale approximately
as Ray0.5 and Ray0.7 respectively. The area-fraction of the domain that is occupied
by upward and downward moving fluid and the skewness of the vertical velocity
are studied to understand the asymmetry inherent in the system. We conclude with
a short discussion on the relevance to atmospheric convection and the scope for
further investigations of atmospheric convection using similar simplified approaches.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: This project has received funding from the European Union’s Horizon
2020 research and innovation programme under the Marie Sklodowska–Curie grant agreement
No. 101034413. CM gratefully acknowledges funding from the European Research Council
(ERC) under the European Union’s Horizon 2020 research and innovation program (Project
CLUSTER, Grant Agreement No. 805041). This research was supported by the Scientific
Service Units (SSU) of IST Austria through resources provided by Scientific Computing
(SciComp).
article_number: '108011'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Lokahith N
full_name: Agasthya, Lokahith N
id: cd100965-0804-11ed-9c55-f4878ff4e877
last_name: Agasthya
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
citation:
ama: Agasthya LN, Muller CJ. Dynamics and scaling of internally cooled convection.
Communications in Nonlinear Science and Numerical Simulation. 2024;134.
doi:10.1016/j.cnsns.2024.108011
apa: Agasthya, L. N., & Muller, C. J. (2024). Dynamics and scaling of internally
cooled convection. Communications in Nonlinear Science and Numerical Simulation.
Elsevier. https://doi.org/10.1016/j.cnsns.2024.108011
chicago: Agasthya, Lokahith N, and Caroline J Muller. “Dynamics and Scaling of Internally
Cooled Convection.” Communications in Nonlinear Science and Numerical Simulation.
Elsevier, 2024. https://doi.org/10.1016/j.cnsns.2024.108011.
ieee: L. N. Agasthya and C. J. Muller, “Dynamics and scaling of internally cooled
convection,” Communications in Nonlinear Science and Numerical Simulation,
vol. 134. Elsevier, 2024.
ista: Agasthya LN, Muller CJ. 2024. Dynamics and scaling of internally cooled convection.
Communications in Nonlinear Science and Numerical Simulation. 134, 108011.
mla: Agasthya, Lokahith N., and Caroline J. Muller. “Dynamics and Scaling of Internally
Cooled Convection.” Communications in Nonlinear Science and Numerical Simulation,
vol. 134, 108011, Elsevier, 2024, doi:10.1016/j.cnsns.2024.108011.
short: L.N. Agasthya, C.J. Muller, Communications in Nonlinear Science and Numerical
Simulation 134 (2024).
corr_author: '1'
date_created: 2024-04-14T22:01:01Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-09-04T13:37:48Z
day: '01'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1016/j.cnsns.2024.108011
ec_funded: 1
external_id:
arxiv:
- '2311.04114'
isi:
- '001238294600001'
file:
- access_level: open_access
checksum: 9b7c2b8281d0b7bc7f08e0468168324c
content_type: application/pdf
creator: dernst
date_created: 2025-01-09T09:05:31Z
date_updated: 2025-01-09T09:05:31Z
file_id: '18795'
file_name: 2024_CommNonlinear_Agasthya.pdf
file_size: 1257925
relation: main_file
success: 1
file_date_updated: 2025-01-09T09:05:31Z
has_accepted_license: '1'
intvolume: ' 134'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
- _id: 629205d8-2b32-11ec-9570-e1356ff73576
call_identifier: H2020
grant_number: '805041'
name: Organization of CLoUdS, and implications of Tropical cyclones and for the
Energetics of the tropics, in current and waRming climate
publication: Communications in Nonlinear Science and Numerical Simulation
publication_identifier:
issn:
- 1007-5704
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamics and scaling of internally cooled convection
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 134
year: '2024'
...
---
_id: '15314'
abstract:
- lang: eng
text: Development of electroactive materials exhibiting high performance with superior
stability is crucial in the field of supercapacitors and battery research. We
report on synthesis of highly stable composite of semi-polycrystalline polyaniline
and graphene (SPani-graphene) and its application in supercapacitor electrodes.
The electrochemical behavior and device performance of the electrodes were investigated
through cyclic voltammetry (CV), galvanostatic charge-discharge GCD) and electrochemical
impedance spectroscopy (EIS) in a 3-electrode and a 2-electrode (device) cell
configurations, repectively. The cell specific capacitance (Cell Csp) achieved
from the 2-electrode symmetric cell configuration was 525.5 F g−1 at 0.1 A g−1
using polymer gel electrolyte (PGE). The PGE in this work is xanthan gum jellied
in 1 M aq. Na2SO4. The maximum energy density and power density achieved from
the device was 46.7 Wh kg−1 and 16.16 kW kg−1, respectively, at 0.4 A g−1. Furthermore,
the device exhibits an excellent retention of cell specific capacitance and coulombic
efficiency of 97 % and 94 %, respectively, over 10,000 continuous GCD cycles,
indicating an excellent rate capability as well as a promising power management.
To investigate the material's electrochemical durability, a detailed EIS study
has been carried out using both, 3-electrode, and 2-electrode cell configurations,
before and after long cycling test (over 10,000 continuous GCD cycles). Our thorough
experimentation delivers satisfactory results and has been explained in detail
in the manuscript. Hereby, we propose that the EIS technique can be adopted for
investigating materials' electrochemical stability, in addition to long CV and
GCD cycles in the field of supercapacitors and battery research.
acknowledgement: "This work was supported by Korea Institute of Energy Technology
Evaluation and Planning (KETEP); and Ministry of Trade, Industry & Energy (MOTIE),
Republic of Korea (Grant No. \r\n20210501010020)."
article_number: '111464'
article_processing_charge: No
article_type: original
author:
- first_name: Neelima
full_name: Mahato, Neelima
last_name: Mahato
- first_name: Saurabh
full_name: Singh, Saurabh
id: 12d625da-9cb3-11ed-9667-af09d37d3f0a
last_name: Singh
orcid: 0000-0003-2209-5269
- first_name: T. V.M.
full_name: Sreekanth, T. V.M.
last_name: Sreekanth
- first_name: Kisoo
full_name: Yoo, Kisoo
last_name: Yoo
- first_name: Jonghoon
full_name: Kim, Jonghoon
last_name: Kim
citation:
ama: 'Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. Polycrystalline phases engineered
in-situ in polyaniline-graphene composite evoluting an exceptional stability and
high charge storage capacity: An EIS investigative approach to evaluate material’s
stability. Journal of Energy Storage. 2024;88. doi:10.1016/j.est.2024.111464'
apa: 'Mahato, N., Singh, S., Sreekanth, T. V. M., Yoo, K., & Kim, J. (2024).
Polycrystalline phases engineered in-situ in polyaniline-graphene composite evoluting
an exceptional stability and high charge storage capacity: An EIS investigative
approach to evaluate material’s stability. Journal of Energy Storage. Elsevier.
https://doi.org/10.1016/j.est.2024.111464'
chicago: 'Mahato, Neelima, Saurabh Singh, T. V.M. Sreekanth, Kisoo Yoo, and Jonghoon
Kim. “Polycrystalline Phases Engineered In-Situ in Polyaniline-Graphene Composite
Evoluting an Exceptional Stability and High Charge Storage Capacity: An EIS Investigative
Approach to Evaluate Material’s Stability.” Journal of Energy Storage.
Elsevier, 2024. https://doi.org/10.1016/j.est.2024.111464.'
ieee: 'N. Mahato, S. Singh, T. V. M. Sreekanth, K. Yoo, and J. Kim, “Polycrystalline
phases engineered in-situ in polyaniline-graphene composite evoluting an exceptional
stability and high charge storage capacity: An EIS investigative approach to evaluate
material’s stability,” Journal of Energy Storage, vol. 88. Elsevier, 2024.'
ista: 'Mahato N, Singh S, Sreekanth TVM, Yoo K, Kim J. 2024. Polycrystalline phases
engineered in-situ in polyaniline-graphene composite evoluting an exceptional
stability and high charge storage capacity: An EIS investigative approach to evaluate
material’s stability. Journal of Energy Storage. 88, 111464.'
mla: 'Mahato, Neelima, et al. “Polycrystalline Phases Engineered In-Situ in Polyaniline-Graphene
Composite Evoluting an Exceptional Stability and High Charge Storage Capacity:
An EIS Investigative Approach to Evaluate Material’s Stability.” Journal of
Energy Storage, vol. 88, 111464, Elsevier, 2024, doi:10.1016/j.est.2024.111464.'
short: N. Mahato, S. Singh, T.V.M. Sreekanth, K. Yoo, J. Kim, Journal of Energy
Storage 88 (2024).
date_created: 2024-04-14T22:01:01Z
date_published: 2024-05-30T00:00:00Z
date_updated: 2025-09-04T13:38:27Z
day: '30'
department:
- _id: MaIb
doi: 10.1016/j.est.2024.111464
external_id:
isi:
- '001287584100001'
intvolume: ' 88'
isi: 1
language:
- iso: eng
month: '05'
oa_version: None
publication: Journal of Energy Storage
publication_identifier:
eissn:
- 2352-152X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Polycrystalline phases engineered in-situ in polyaniline-graphene composite
evoluting an exceptional stability and high charge storage capacity: An EIS investigative
approach to evaluate material''s stability'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 88
year: '2024'
...
---
_id: '15315'
abstract:
- lang: eng
text: Single and collective cell migration are fundamental processes critical for
physiological phenomena ranging from embryonic development and immune response
to wound healing and cancer metastasis. To understand cell migration from a physical
perspective, a broad variety of models for the underlying physical mechanisms
that govern cell motility have been developed. A key challenge in the development
of such models is how to connect them to experimental observations, which often
exhibit complex stochastic behaviours. In this review, we discuss recent advances
in data-driven theoretical approaches that directly connect with experimental
data to infer dynamical models of stochastic cell migration. Leveraging advances
in nanofabrication, image analysis, and tracking technology, experimental studies
now provide unprecedented large datasets on cellular dynamics. In parallel, theoretical
efforts have been directed towards integrating such datasets into physical models
from the single cell to the tissue scale with the aim of conceptualising the emergent
behaviour of cells. We first review how this inference problem has been addressed
in both freely migrating and confined cells. Next, we discuss why these dynamics
typically take the form of underdamped stochastic equations of motion, and how
such equations can be inferred from data. We then review applications of data-driven
inference and machine learning approaches to heterogeneity in cell behaviour,
subcellular degrees of freedom, and to the collective dynamics of multicellular
systems. Across these applications, we emphasise how data-driven methods can be
integrated with physical active matter models of migrating cells, and help reveal
how underlying molecular mechanisms control cell behaviour. Together, these data-driven
approaches are a promising avenue for building physical models of cell migration
directly from experimental data, and for providing conceptual links between different
length-scales of description.
acknowledgement: This work was supported by the Deutsche Forschungsgemeinschaft (German
Research Foundation)—Project-ID 201269156—SFB 1032 (Project B12). D B B was supported
by an NOMIS Fellowship and an EMBO Fellowship (ALTF 343-2022). We thank Joachim
Rädler, Alexandra Fink, Erwin Frey, Pierre Ronceray, Ricard Alert, Edouard Hannezo,
Henrik Flyvbjerg, Ulrich Schwarz, Joshua Shaevitz, Greg Stephens, Andrea Cavagna,
Grzegorz Gradziuk, Fridtjof Brauns, Nikolas Claussen, Tom Brandstätter, Johannes
Flommersfeld, Christoph Schreiber, Nicolas Arlt, Matthew Schmitt, Joris Messelink,
Federico Gnesotto, Federica Mura, Bram Hoogland, Manon Wigbers, Isabella Graf, Jessica
Lober, and many others for inspiring discussions. We also thank Claudia Flandoli
for the artwork in figures 1, 5, 8 and 9.
article_number: '056601'
article_processing_charge: Yes (in subscription journal)
article_type: review
arxiv: 1
author:
- first_name: David
full_name: Brückner, David
id: e1e86031-6537-11eb-953a-f7ab92be508d
last_name: Brückner
orcid: 0000-0001-7205-2975
- first_name: Chase P.
full_name: Broedersz, Chase P.
last_name: Broedersz
citation:
ama: 'Brückner D, Broedersz CP. Learning dynamical models of single and collective
cell migration: a review. Reports on Progress in Physics. 2024;87(5). doi:10.1088/1361-6633/ad36d2'
apa: 'Brückner, D., & Broedersz, C. P. (2024). Learning dynamical models of
single and collective cell migration: a review. Reports on Progress in Physics.
IOP Publishing. https://doi.org/10.1088/1361-6633/ad36d2'
chicago: 'Brückner, David, and Chase P. Broedersz. “Learning Dynamical Models of
Single and Collective Cell Migration: A Review.” Reports on Progress in Physics.
IOP Publishing, 2024. https://doi.org/10.1088/1361-6633/ad36d2.'
ieee: 'D. Brückner and C. P. Broedersz, “Learning dynamical models of single and
collective cell migration: a review,” Reports on Progress in Physics, vol.
87, no. 5. IOP Publishing, 2024.'
ista: 'Brückner D, Broedersz CP. 2024. Learning dynamical models of single and collective
cell migration: a review. Reports on Progress in Physics. 87(5), 056601.'
mla: 'Brückner, David, and Chase P. Broedersz. “Learning Dynamical Models of Single
and Collective Cell Migration: A Review.” Reports on Progress in Physics,
vol. 87, no. 5, 056601, IOP Publishing, 2024, doi:10.1088/1361-6633/ad36d2.'
short: D. Brückner, C.P. Broedersz, Reports on Progress in Physics 87 (2024).
corr_author: '1'
date_created: 2024-04-14T22:01:01Z
date_published: 2024-04-04T00:00:00Z
date_updated: 2025-09-04T13:39:07Z
day: '04'
ddc:
- '530'
department:
- _id: EdHa
doi: 10.1088/1361-6633/ad36d2
external_id:
arxiv:
- '2309.00545'
isi:
- '001196692400001'
pmid:
- '38518358'
file:
- access_level: open_access
checksum: c5910078230ade20f4dd83592e862a72
content_type: application/pdf
creator: dernst
date_created: 2024-08-20T11:00:03Z
date_updated: 2024-08-20T11:00:03Z
file_id: '17451'
file_name: 2024_ReportPhysics_Brueckner.pdf
file_size: 4376898
relation: main_file
success: 1
file_date_updated: 2024-08-20T11:00:03Z
has_accepted_license: '1'
intvolume: ' 87'
isi: 1
issue: '5'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 34e2a5b5-11ca-11ed-8bc3-b2265616ef0b
grant_number: ALTF 343-2022
name: A mechano-chemical theory for stem cell fate decisions in organoid development
publication: Reports on Progress in Physics
publication_identifier:
eissn:
- 1361-6633
issn:
- 0034-4885
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Learning dynamical models of single and collective cell migration: a review'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 87
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '15316'
abstract:
- lang: eng
text: Genomic DNA that resides in the nuclei of mammalian neurons can be as old
as the organism itself. The life span of nuclear RNAs, which are critical for
proper chromatin architecture and transcription regulation, has not been determined
in adult tissues. In this work, we identified and characterized nuclear RNAs that
do not turn over for at least 2 years in a subset of postnatally born cells in
the mouse brain. These long-lived RNAs were stably retained in nuclei in a neural
cell type–specific manner and were required for the maintenance of heterochromatin.
Thus, the life span of neural cells may depend on both the molecular longevity
of DNA for the storage of genetic information and also the extreme stability of
RNA for the functional organization of chromatin.
acknowledgement: 'European Research Council: ERC-2018-STG, 804468 EAGER; European
Research Council: ERC-2023-COG, 101125034 NEUTIME; Deutsche Forschungsgemeinschaft:
TO1347/4-1; Boehringer Ingelheim Stiftung; Deutsches Zentrum für Neurodegenerative
Erkrankungen'
article_processing_charge: No
article_type: original
author:
- first_name: Sara
full_name: Zocher, Sara
last_name: Zocher
- first_name: Asako
full_name: Mccloskey, Asako
last_name: Mccloskey
- first_name: Anne
full_name: Karasinsky, Anne
last_name: Karasinsky
- first_name: Roberta
full_name: Schulte, Roberta
last_name: Schulte
- first_name: Ulrike
full_name: Friedrich, Ulrike
last_name: Friedrich
- first_name: Mathias
full_name: Lesche, Mathias
last_name: Lesche
- first_name: Nicole
full_name: Rund, Nicole
last_name: Rund
- first_name: Fred H.
full_name: Gage, Fred H.
last_name: Gage
- first_name: Martin W
full_name: Hetzer, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: Hetzer
orcid: 0000-0002-2111-992X
- first_name: Tomohisa
full_name: Toda, Tomohisa
last_name: Toda
citation:
ama: Zocher S, Mccloskey A, Karasinsky A, et al. Lifelong persistence of nuclear
RNAs in the mouse brain. Science. 2024;384(6691):53-59. doi:10.1126/science.adf3481
apa: Zocher, S., Mccloskey, A., Karasinsky, A., Schulte, R., Friedrich, U., Lesche,
M., … Toda, T. (2024). Lifelong persistence of nuclear RNAs in the mouse brain.
Science. AAAS. https://doi.org/10.1126/science.adf3481
chicago: Zocher, Sara, Asako Mccloskey, Anne Karasinsky, Roberta Schulte, Ulrike
Friedrich, Mathias Lesche, Nicole Rund, Fred H. Gage, Martin Hetzer, and Tomohisa
Toda. “Lifelong Persistence of Nuclear RNAs in the Mouse Brain.” Science.
AAAS, 2024. https://doi.org/10.1126/science.adf3481.
ieee: S. Zocher et al., “Lifelong persistence of nuclear RNAs in the mouse
brain,” Science, vol. 384, no. 6691. AAAS, pp. 53–59, 2024.
ista: Zocher S, Mccloskey A, Karasinsky A, Schulte R, Friedrich U, Lesche M, Rund
N, Gage FH, Hetzer M, Toda T. 2024. Lifelong persistence of nuclear RNAs in the
mouse brain. Science. 384(6691), 53–59.
mla: Zocher, Sara, et al. “Lifelong Persistence of Nuclear RNAs in the Mouse Brain.”
Science, vol. 384, no. 6691, AAAS, 2024, pp. 53–59, doi:10.1126/science.adf3481.
short: S. Zocher, A. Mccloskey, A. Karasinsky, R. Schulte, U. Friedrich, M. Lesche,
N. Rund, F.H. Gage, M. Hetzer, T. Toda, Science 384 (2024) 53–59.
corr_author: '1'
date_created: 2024-04-14T22:01:01Z
date_published: 2024-04-04T00:00:00Z
date_updated: 2025-09-04T13:39:58Z
day: '04'
department:
- _id: MaHe
doi: 10.1126/science.adf3481
external_id:
isi:
- '001253335100031'
pmid:
- '38574132'
intvolume: ' 384'
isi: 1
issue: '6691'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7615865
month: '04'
oa: 1
oa_version: Submitted Version
page: 53-59
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: AAAS
quality_controlled: '1'
related_material:
link:
- description: News on ISTA website
relation: press_release
url: https://ista.ac.at/en/news/nerve-cells-old-at-heart/
scopus_import: '1'
status: public
title: Lifelong persistence of nuclear RNAs in the mouse brain
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 384
year: '2024'
...
---
_id: '15317'
abstract:
- lang: eng
text: 'We consider the open symmetric exclusion (SEP) and inclusion (SIP) processes
on a bounded Lipschitz domain Ω, with both fast and slow boundary. For the random
walks on Ω dual to SEP/SIP we establish: a functional-CLT-type convergence to
the Brownian motion on Ω with either Neumann (slow boundary), Dirichlet (fast
boundary), or Robin (at criticality) boundary conditions; the discrete-to-continuum
convergence of the corresponding harmonic profiles. As a consequence, we rigorously
derive the hydrodynamic and hydrostatic limits for SEP/SIP on Ω, and analyze their
stationary nonequilibrium fluctuations. All scaling limit results for SEP/SIP
concern finite-dimensional distribution convergence only, as our duality techniques
do not require to establish tightness for the fields associated to the particle
systems.'
acknowledgement: "The first author gratefully acknowledges funding by the Austrian
Science Fund (FWF) grant F65, by the European Research Council (ERC, grant agreement
No 716117, awarded to Prof. Dr. Jan Maas). He also gratefully acknowledges funding
of his current position by the Austrian Science Fund (FWF) grant ESPRIT 208.\r\nThe
second author gratefully acknowledges funding by the Hausdorff Center for Mathematics
at the University of Bonn. Part of this work was completed while this author was
a member of the Institute of Science and Technology Austria. He gratefully acknowledges
funding of his position at that time by the Austrian Science Fund (FWF) grants F65
and W1245.\r\nThe third author gratefully acknowledges funding by the Lise Meitner
fellowship, Austrian Science Fund (FWF): M3211. Part of this work was completed
while funded by the European Union’s Horizon 2020 research and innovation programme
under the Marie-Skłodowska-Curie grant agreement No. 754411."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lorenzo
full_name: Dello Schiavo, Lorenzo
id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
last_name: Dello Schiavo
orcid: 0000-0002-9881-6870
- first_name: Lorenzo
full_name: Portinale, Lorenzo
id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
last_name: Portinale
- first_name: Federico
full_name: Sau, Federico
id: E1836206-9F16-11E9-8814-AEFDE5697425
last_name: Sau
citation:
ama: Dello Schiavo L, Portinale L, Sau F. Scaling limits of random walks, harmonic
profiles, and stationary nonequilibrium states in Lipschitz domains. Annals
of Applied Probability. 2024;34(2):1789-1845. doi:10.1214/23-AAP2007
apa: Dello Schiavo, L., Portinale, L., & Sau, F. (2024). Scaling limits of random
walks, harmonic profiles, and stationary nonequilibrium states in Lipschitz domains.
Annals of Applied Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/23-AAP2007
chicago: Dello Schiavo, Lorenzo, Lorenzo Portinale, and Federico Sau. “Scaling Limits
of Random Walks, Harmonic Profiles, and Stationary Nonequilibrium States in Lipschitz
Domains.” Annals of Applied Probability. Institute of Mathematical Statistics,
2024. https://doi.org/10.1214/23-AAP2007.
ieee: L. Dello Schiavo, L. Portinale, and F. Sau, “Scaling limits of random walks,
harmonic profiles, and stationary nonequilibrium states in Lipschitz domains,”
Annals of Applied Probability, vol. 34, no. 2. Institute of Mathematical
Statistics, pp. 1789–1845, 2024.
ista: Dello Schiavo L, Portinale L, Sau F. 2024. Scaling limits of random walks,
harmonic profiles, and stationary nonequilibrium states in Lipschitz domains.
Annals of Applied Probability. 34(2), 1789–1845.
mla: Dello Schiavo, Lorenzo, et al. “Scaling Limits of Random Walks, Harmonic Profiles,
and Stationary Nonequilibrium States in Lipschitz Domains.” Annals of Applied
Probability, vol. 34, no. 2, Institute of Mathematical Statistics, 2024, pp.
1789–845, doi:10.1214/23-AAP2007.
short: L. Dello Schiavo, L. Portinale, F. Sau, Annals of Applied Probability 34
(2024) 1789–1845.
corr_author: '1'
date_created: 2024-04-14T22:01:02Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2025-09-04T13:36:00Z
day: '01'
department:
- _id: JaMa
doi: 10.1214/23-AAP2007
ec_funded: 1
external_id:
arxiv:
- '2112.14196'
isi:
- '001198623200016'
intvolume: ' 34'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2112.14196
month: '04'
oa: 1
oa_version: Preprint
page: 1789-1845
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
- _id: 3490b268-11ca-11ed-8bc3-e0ad03f48839
grant_number: M03211
name: Reaching consensus in heterogeneous random opinion dynamics
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 34dbf174-11ca-11ed-8bc3-afe9d43d4b9c
grant_number: E208
name: Configuration Spaces over Non-Smooth Spaces
- _id: 260788DE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: W1245
name: Dissipation and dispersion in nonlinear partial differential equations
publication: Annals of Applied Probability
publication_identifier:
issn:
- 1050-5164
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Scaling limits of random walks, harmonic profiles, and stationary nonequilibrium
states in Lipschitz domains
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 34
year: '2024'
...