---
OA_place: publisher
OA_type: diamond
_id: '19408'
abstract:
- lang: eng
  text: 'Continual learning is a subfield of machine learning, which aims to allow
    machine learning models to continuously learn on new data, by accumulating knowledge
    without forgetting what was learned in the past. In this work, we take a step
    back, and ask: "Why should one care about continual learning in the first place?".
    We set the stage by examining recent continual learning papers published at four
    major machine learning conferences, and show that memory-constrained settings
    dominate the field. Then, we discuss five open problems in machine learning, and
    even though they might seem unrelated to continual learning at first sight, we
    show that continual learning will inevitably be part of their solution. These
    problems are model editing, personalization and specialization, on-device learning,
    faster (re-)training and reinforcement learning. Finally, by comparing the desiderata
    from these unsolved problems and the current assumptions in continual learning,
    we highlight and discuss four future directions for continual learning research.
    We hope that this work offers an interesting perspective on the future of continual
    learning, while displaying its potential value and the paths we have to pursue
    in order to make it successful. This work is the result of the many discussions
    the authors had at the Dagstuhl seminar on Deep Continual Learning, in March 2023.'
alternative_title:
- TMLR
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Eli
  full_name: Verwimp, Eli
  last_name: Verwimp
- first_name: Rahaf
  full_name: Aljundi, Rahaf
  last_name: Aljundi
- first_name: Shai
  full_name: Ben-David, Shai
  last_name: Ben-David
- first_name: Matthias
  full_name: Bethge, Matthias
  last_name: Bethge
- first_name: Andrea
  full_name: Cossu, Andrea
  last_name: Cossu
- first_name: Alexander
  full_name: Gepperth, Alexander
  last_name: Gepperth
- first_name: Tyler L.
  full_name: Hayes, Tyler L.
  last_name: Hayes
- first_name: Eyke
  full_name: Hüllermeier, Eyke
  last_name: Hüllermeier
- first_name: Christopher
  full_name: Kanan, Christopher
  last_name: Kanan
- first_name: Dhireesha
  full_name: Kudithipudi, Dhireesha
  last_name: Kudithipudi
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
- first_name: Martin
  full_name: Mundt, Martin
  last_name: Mundt
- first_name: Razvan
  full_name: Pascanu, Razvan
  last_name: Pascanu
- first_name: Adrian
  full_name: Popescu, Adrian
  last_name: Popescu
- first_name: Andreas S.
  full_name: Tolias, Andreas S.
  last_name: Tolias
- first_name: Joost
  full_name: Van De Weijer, Joost
  last_name: Van De Weijer
- first_name: Bing
  full_name: Liu, Bing
  last_name: Liu
- first_name: Vincenzo
  full_name: Lomonaco, Vincenzo
  last_name: Lomonaco
- first_name: Tinne
  full_name: Tuytelaars, Tinne
  last_name: Tuytelaars
- first_name: Gido M.
  full_name: Van De Ven, Gido M.
  last_name: Van De Ven
citation:
  ama: 'Verwimp E, Aljundi R, Ben-David S, et al. Continual learning: Applications
    and the road forward. <i>Transactions on Machine Learning Research</i>. 2024;2024.'
  apa: 'Verwimp, E., Aljundi, R., Ben-David, S., Bethge, M., Cossu, A., Gepperth,
    A., … Van De Ven, G. M. (2024). Continual learning: Applications and the road
    forward. <i>Transactions on Machine Learning Research</i>. Transactions on Machine
    Learning Research.'
  chicago: 'Verwimp, Eli, Rahaf Aljundi, Shai Ben-David, Matthias Bethge, Andrea Cossu,
    Alexander Gepperth, Tyler L. Hayes, et al. “Continual Learning: Applications and
    the Road Forward.” <i>Transactions on Machine Learning Research</i>. Transactions
    on Machine Learning Research, 2024.'
  ieee: 'E. Verwimp <i>et al.</i>, “Continual learning: Applications and the road
    forward,” <i>Transactions on Machine Learning Research</i>, vol. 2024. Transactions
    on Machine Learning Research, 2024.'
  ista: 'Verwimp E, Aljundi R, Ben-David S, Bethge M, Cossu A, Gepperth A, Hayes TL,
    Hüllermeier E, Kanan C, Kudithipudi D, Lampert C, Mundt M, Pascanu R, Popescu
    A, Tolias AS, Van De Weijer J, Liu B, Lomonaco V, Tuytelaars T, Van De Ven GM.
    2024. Continual learning: Applications and the road forward. Transactions on Machine
    Learning Research. 2024.'
  mla: 'Verwimp, Eli, et al. “Continual Learning: Applications and the Road Forward.”
    <i>Transactions on Machine Learning Research</i>, vol. 2024, Transactions on Machine
    Learning Research, 2024.'
  short: E. Verwimp, R. Aljundi, S. Ben-David, M. Bethge, A. Cossu, A. Gepperth, T.L.
    Hayes, E. Hüllermeier, C. Kanan, D. Kudithipudi, C. Lampert, M. Mundt, R. Pascanu,
    A. Popescu, A.S. Tolias, J. Van De Weijer, B. Liu, V. Lomonaco, T. Tuytelaars,
    G.M. Van De Ven, Transactions on Machine Learning Research 2024 (2024).
date_created: 2025-03-16T23:01:25Z
date_published: 2024-04-12T00:00:00Z
date_updated: 2025-03-20T09:21:02Z
day: '12'
ddc:
- '000'
department:
- _id: ChLa
external_id:
  arxiv:
  - '2311.11908'
file:
- access_level: open_access
  checksum: 0714e12f7423cd098976ed9974561155
  content_type: application/pdf
  creator: dernst
  date_created: 2025-03-20T09:02:18Z
  date_updated: 2025-03-20T09:02:18Z
  file_id: '19426'
  file_name: 2024_TMLR_Verwimp.pdf
  file_size: 1367966
  relation: main_file
  success: 1
file_date_updated: 2025-03-20T09:02:18Z
has_accepted_license: '1'
intvolume: '      2024'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: Transactions on Machine Learning Research
publication_identifier:
  eissn:
  - 2835-8856
publication_status: published
publisher: Transactions on Machine Learning Research
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Continual learning: Applications and the road forward'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2024
year: '2024'
...
---
OA_type: closed access
_id: '19446'
abstract:
- lang: eng
  text: This Comment explores new approaches to enrich large-scale population data,
    including incorporating macro-environmental and digital health measures.
acknowledgement: Funded by the European Union. Complementary funding was received
  by the UK Research and Innovation (UKRI) under the UK government’s Horizon Europe
  funding guarantee (10041392 and 10038599). Views and opinions expressed are however
  those of the author(s) only and do not necessarily reflect those of the European
  Union, the European Health and Digital Executive Agency (HADEA) or UKRI. The European
  Union, HADEA and UKRI cannot be held responsible for them. This work received also
  support from Chinese Ministry for Science and Technology (MOST), the Horizon 2020-funded
  European Research Council Advanced Grant ‘STRATIFY’ (695313), the German Research
  Foundation (COPE; 675346; NE 1383/15-1 (CoviDrug)) and the National Natural Science
  Foundation of China grant 82150710554.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Paul
  full_name: Renner, Paul
  last_name: Renner
- first_name: Nathalie E.
  full_name: Holz, Nathalie E.
  last_name: Holz
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Sebastian
  full_name: Siehl, Sebastian
  last_name: Siehl
- first_name: Sören
  full_name: Hese, Sören
  last_name: Hese
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
- first_name: Andreas
  full_name: Heinz, Andreas
  last_name: Heinz
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Nilakshi
  full_name: Vaidya, Nilakshi
  last_name: Vaidya
- first_name: Antoine
  full_name: Bernas, Antoine
  last_name: Bernas
- first_name: Emin
  full_name: Serin, Emin
  last_name: Serin
- first_name: Marcel
  full_name: Jentsch, Marcel
  last_name: Jentsch
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Hedi
  full_name: Kebir, Hedi
  last_name: Kebir
- first_name: Tristram A.
  full_name: Lett, Tristram A.
  last_name: Lett
- first_name: Jean Charles
  full_name: Roy, Jean Charles
  last_name: Roy
- first_name: Roland
  full_name: Eils, Roland
  last_name: Eils
- first_name: Ulrike Helene
  full_name: Taron, Ulrike Helene
  last_name: Taron
- first_name: Tatjana
  full_name: Schütz, Tatjana
  last_name: Schütz
- first_name: Jamie
  full_name: Banks, Jamie
  last_name: Banks
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Karina
  full_name: Jansone, Karina
  last_name: Jansone
- first_name: Nina
  full_name: Christmann, Nina
  last_name: Christmann
- first_name: Andreas
  full_name: Meyer-Lindenberg, Andreas
  last_name: Meyer-Lindenberg
- first_name: Heike
  full_name: Tost, Heike
  last_name: Tost
- first_name: Nathalie
  full_name: Holz, Nathalie
  last_name: Holz
- first_name: Emanuel
  full_name: Schwarz, Emanuel
  last_name: Schwarz
- first_name: Argyris
  full_name: Stringaris, Argyris
  last_name: Stringaris
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Beke
  full_name: Seefried, Beke
  last_name: Seefried
- first_name: Rieke
  full_name: Aden, Rieke
  last_name: Aden
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Lars T.
  full_name: Westlye, Lars T.
  last_name: Westlye
- first_name: Dennis
  full_name: Van Der Meer, Dennis
  last_name: Van Der Meer
- first_name: Sara
  full_name: Fernandez, Sara
  last_name: Fernandez
- first_name: Rikka
  full_name: Kjelkenes, Rikka
  last_name: Kjelkenes
- first_name: Helga
  full_name: Ask, Helga
  last_name: Ask
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Mira
  full_name: Tschorn, Mira
  last_name: Tschorn
- first_name: Sarah Jane
  full_name: Böttger, Sarah Jane
  last_name: Böttger
- first_name: Andre
  full_name: Marquand, Andre
  last_name: Marquand
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Lena
  full_name: Marr, Lena
  id: 4406F586-F248-11E8-B48F-1D18A9856A87
  last_name: Marr
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Guillem Feixas
  full_name: Viapiana, Guillem Feixas
  last_name: Viapiana
- first_name: Francisco Eiroa
  full_name: Orosa, Francisco Eiroa
  last_name: Orosa
- first_name: Jaime
  full_name: Gallego, Jaime
  last_name: Gallego
- first_name: Alvaro
  full_name: Pastor, Alvaro
  last_name: Pastor
- first_name: Andreas J.
  full_name: Forstner, Andreas J.
  last_name: Forstner
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: Isabelle
  full_name: Claus, Isabelle
  last_name: Claus
- first_name: Abigail
  full_name: Miller, Abigail
  last_name: Miller
- first_name: Carina M.
  full_name: Mathey, Carina M.
  last_name: Mathey
- first_name: Stefanie
  full_name: Heilmann-Heimbach, Stefanie
  last_name: Heilmann-Heimbach
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Myrto
  full_name: Patraskaki, Myrto
  last_name: Patraskaki
- first_name: Johannes
  full_name: Wilbertz, Johannes
  last_name: Wilbertz
- first_name: Karen
  full_name: Schmitt, Karen
  last_name: Schmitt
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Spase
  full_name: Petkoski, Spase
  last_name: Petkoski
- first_name: Séverine
  full_name: Pitel, Séverine
  last_name: Pitel
- first_name: Lisa
  full_name: Otten, Lisa
  last_name: Otten
- first_name: Anastasios Polykarpos
  full_name: Athanasiadis, Anastasios Polykarpos
  last_name: Athanasiadis
- first_name: Charlie
  full_name: Pearmund, Charlie
  last_name: Pearmund
- first_name: Bernhard
  full_name: Spanlang, Bernhard
  last_name: Spanlang
- first_name: Elena
  full_name: Alvarez, Elena
  last_name: Alvarez
- first_name: Mavi
  full_name: Sanchez, Mavi
  last_name: Sanchez
- first_name: Arantxa
  full_name: Giner, Arantxa
  last_name: Giner
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Yanting
  full_name: Gong, Yanting
  last_name: Gong
- first_name: Yunman
  full_name: Xia, Yunman
  last_name: Xia
- first_name: Xiao
  full_name: Chang, Xiao
  last_name: Chang
- first_name: Vince
  full_name: Calhoun, Vince
  last_name: Calhoun
- first_name: Jingyu
  full_name: Liu, Jingyu
  last_name: Liu
- first_name: Ameli
  full_name: Schwalber, Ameli
  last_name: Schwalber
- first_name: Paul
  full_name: Thompson, Paul
  last_name: Thompson
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Sylvane
  full_name: Desrivières, Sylvane
  last_name: Desrivières
- first_name: Allan H.
  full_name: Young, Allan H.
  last_name: Young
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: George
  full_name: Ogoh, George
  last_name: Ogoh
citation:
  ama: Nees F, Renner P, Holz NE, et al. Large-scale population data enrichment in
    mental health research. <i>Nature Mental Health</i>. 2024;2(10):1124-1127. doi:<a
    href="https://doi.org/10.1038/s44220-024-00316-z">10.1038/s44220-024-00316-z</a>
  apa: Nees, F., Renner, P., Holz, N. E., Polemiti, E., Siehl, S., Hese, S., … Ogoh,
    G. (2024). Large-scale population data enrichment in mental health research. <i>Nature
    Mental Health</i>. Springer Nature. <a href="https://doi.org/10.1038/s44220-024-00316-z">https://doi.org/10.1038/s44220-024-00316-z</a>
  chicago: Nees, Frauke, Paul Renner, Nathalie E. Holz, Elli Polemiti, Sebastian Siehl,
    Sören Hese, Kerstin Schepanski, et al. “Large-Scale Population Data Enrichment
    in Mental Health Research.” <i>Nature Mental Health</i>. Springer Nature, 2024.
    <a href="https://doi.org/10.1038/s44220-024-00316-z">https://doi.org/10.1038/s44220-024-00316-z</a>.
  ieee: F. Nees <i>et al.</i>, “Large-scale population data enrichment in mental health
    research,” <i>Nature Mental Health</i>, vol. 2, no. 10. Springer Nature, pp. 1124–1127,
    2024.
  ista: Nees F, Renner P, Holz NE, Polemiti E, Siehl S, Hese S, Schepanski K, Schumann
    G, Walter H, Heinz A, Ralser M, Twardziok S, Vaidya N, Bernas A, Serin E, Jentsch
    M, Hitchen E, Kebir H, Lett TA, Roy JC, Eils R, Taron UH, Schütz T, Banks J, Banaschewski
    T, Jansone K, Christmann N, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris
    A, Neidhart M, Seefried B, Aden R, Andreassen OA, Westlye LT, Van Der Meer D,
    Fernandez S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger SJ, Marquand A, Novarino
    G, Marr L, Slater M, Viapiana GF, Orosa FE, Gallego J, Pastor A, Forstner AJ,
    Hoffmann P, Nöthen MM, Claus I, Miller A, Mathey CM, Heilmann-Heimbach S, Sommer
    P, Patraskaki M, Wilbertz J, Schmitt K, Jirsa V, Petkoski S, Pitel S, Otten L,
    Athanasiadis AP, Pearmund C, Spanlang B, Alvarez E, Sanchez M, Giner A, Jia T,
    Gong Y, Xia Y, Chang X, Calhoun V, Liu J, Schwalber A, Thompson P, Clinton N,
    Desrivières S, Young AH, Stahl B, Ogoh G. 2024. Large-scale population data enrichment
    in mental health research. Nature Mental Health. 2(10), 1124–1127.
  mla: Nees, Frauke, et al. “Large-Scale Population Data Enrichment in Mental Health
    Research.” <i>Nature Mental Health</i>, vol. 2, no. 10, Springer Nature, 2024,
    pp. 1124–27, doi:<a href="https://doi.org/10.1038/s44220-024-00316-z">10.1038/s44220-024-00316-z</a>.
  short: F. Nees, P. Renner, N.E. Holz, E. Polemiti, S. Siehl, S. Hese, K. Schepanski,
    G. Schumann, H. Walter, A. Heinz, M. Ralser, S. Twardziok, N. Vaidya, A. Bernas,
    E. Serin, M. Jentsch, E. Hitchen, H. Kebir, T.A. Lett, J.C. Roy, R. Eils, U.H.
    Taron, T. Schütz, J. Banks, T. Banaschewski, K. Jansone, N. Christmann, A. Meyer-Lindenberg,
    H. Tost, N. Holz, E. Schwarz, A. Stringaris, M. Neidhart, B. Seefried, R. Aden,
    O.A. Andreassen, L.T. Westlye, D. Van Der Meer, S. Fernandez, R. Kjelkenes, H.
    Ask, M. Rapp, M. Tschorn, S.J. Böttger, A. Marquand, G. Novarino, L. Marr, M.
    Slater, G.F. Viapiana, F.E. Orosa, J. Gallego, A. Pastor, A.J. Forstner, P. Hoffmann,
    M.M. Nöthen, I. Claus, A. Miller, C.M. Mathey, S. Heilmann-Heimbach, P. Sommer,
    M. Patraskaki, J. Wilbertz, K. Schmitt, V. Jirsa, S. Petkoski, S. Pitel, L. Otten,
    A.P. Athanasiadis, C. Pearmund, B. Spanlang, E. Alvarez, M. Sanchez, A. Giner,
    T. Jia, Y. Gong, Y. Xia, X. Chang, V. Calhoun, J. Liu, A. Schwalber, P. Thompson,
    N. Clinton, S. Desrivières, A.H. Young, B. Stahl, G. Ogoh, Nature Mental Health
    2 (2024) 1124–1127.
date_created: 2025-03-23T23:01:28Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2025-03-25T08:28:39Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-024-00316-z
fulldoi: https://doi.org/10.1038/s44220-024-00316-z
intvolume: '         2'
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
page: 1124-1127
publication: Nature Mental Health
publication_identifier:
  eissn:
  - 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Large-scale population data enrichment in mental health research
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '19517'
abstract:
- lang: eng
  text: "In this paper, we present a novel data-free method for merging neural networks
    in weight space. Differently from most existing works, our method optimizes for
    the permutations of network neurons globally across all layers. This allows us
    to enforce cycle consistency of the permutations when merging n ≥ 3 models, allowing
    circular compositions of permutations to be computed without accumulating error
    along the path. We qualitatively and quantitatively motivate the need for such
    a constraint, showing its benefits when merging sets of models in scenarios spanning
    varying architectures and datasets. We finally show that, when coupled\r\nwith
    activation renormalization, our approach yields the best results in the task."
acknowledgement: "This work is supported by the ERC grant no.802554 (SPECGEO), PRIN
  2020 project\r\nno.2020TA3K9N (LEGO.AI), and PNRR MUR project PE0000013-FAIR. Marco
  Fumero is supported by the MSCA IST-Bridge fellowship which has received funding
  from the European Union’s Horizon 2020 research and innovation program under the
  Marie Skłodowska-Curie grant agreement No 101034413. We thank Simone Scardapane
  for the helpful feedback on the paper."
alternative_title:
- Advances in Neural Information Processing Systems
article_processing_charge: No
arxiv: 1
author:
- first_name: Donato
  full_name: Crisostomi, Donato
  last_name: Crisostomi
- first_name: Marco
  full_name: Fumero, Marco
  id: 1c1593eb-393f-11ef-bb8e-ab4f1e979650
  last_name: Fumero
- first_name: Daniele
  full_name: Baieri, Daniele
  last_name: Baieri
- first_name: Florian
  full_name: Bernard, Florian
  last_name: Bernard
- first_name: Emanuele
  full_name: Rodolà, Emanuele
  last_name: Rodolà
citation:
  ama: 'Crisostomi D, Fumero M, Baieri D, Bernard F, Rodolà E. C2M3: Cycle-consistent
    multi-model merging. In: <i>38th Conference on Neural Information Processing Systems</i>.
    Vol 37. Neural Information Processing Systems Foundation; 2024.'
  apa: 'Crisostomi, D., Fumero, M., Baieri, D., Bernard, F., &#38; Rodolà, E. (2024).
    C2M3: Cycle-consistent multi-model merging. In <i>38th Conference on Neural Information
    Processing Systems</i> (Vol. 37). Vancouver, Canada: Neural Information Processing
    Systems Foundation.'
  chicago: 'Crisostomi, Donato, Marco Fumero, Daniele Baieri, Florian Bernard, and
    Emanuele Rodolà. “C2M3: Cycle-Consistent Multi-Model Merging.” In <i>38th Conference
    on Neural Information Processing Systems</i>, Vol. 37. Neural Information Processing
    Systems Foundation, 2024.'
  ieee: 'D. Crisostomi, M. Fumero, D. Baieri, F. Bernard, and E. Rodolà, “C2M3: Cycle-consistent
    multi-model merging,” in <i>38th Conference on Neural Information Processing Systems</i>,
    Vancouver, Canada, 2024, vol. 37.'
  ista: 'Crisostomi D, Fumero M, Baieri D, Bernard F, Rodolà E. 2024. C2M3: Cycle-consistent
    multi-model merging. 38th Conference on Neural Information Processing Systems.
    NeurIPS: Neural Information Processing Systems, Advances in Neural Information
    Processing Systems, vol. 37.'
  mla: 'Crisostomi, Donato, et al. “C2M3: Cycle-Consistent Multi-Model Merging.” <i>38th
    Conference on Neural Information Processing Systems</i>, vol. 37, Neural Information
    Processing Systems Foundation, 2024.'
  short: D. Crisostomi, M. Fumero, D. Baieri, F. Bernard, E. Rodolà, in:, 38th Conference
    on Neural Information Processing Systems, Neural Information Processing Systems
    Foundation, 2024.
conference:
  end_date: 2024-12-15
  location: Vancouver, Canada
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2024-12-09
corr_author: '1'
date_created: 2025-04-06T22:01:32Z
date_published: 2024-12-20T00:00:00Z
date_updated: 2025-05-14T11:36:59Z
day: '20'
department:
- _id: FrLo
ec_funded: 1
external_id:
  arxiv:
  - '2405.17897'
intvolume: '        37'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2405.17897
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: 38th Conference on Neural Information Processing Systems
publication_identifier:
  issn:
  - 1049-5258
publication_status: published
publisher: Neural Information Processing Systems Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'C2M3: Cycle-consistent multi-model merging'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '19518'
abstract:
- lang: eng
  text: "The rising footprint of machine learning has led to a focus on imposing model\r\nsparsity
    as a means of reducing computational and memory costs. For deep neural\r\nnetworks
    (DNNs), the state-of-the-art accuracy-vs-sparsity is achieved by heuristics\r\ninspired
    by the classical Optimal Brain Surgeon (OBS) framework [LeCun et al.,\r\n1989,
    Hassibi and Stork, 1992, Hassibi et al., 1993], which leverages loss curvature\r\ninformation
    to make better pruning decisions. Yet, these results still lack a solid\r\ntheoretical
    understanding, and it is unclear whether they can be improved by\r\nleveraging
    connections to the wealth of work on sparse recovery algorithms. In this\r\npaper,
    we draw new connections between these two areas and present new sparse\r\nrecovery
    algorithms inspired by the OBS framework that comes with theoretical\r\nguarantees
    under reasonable assumptions and have strong practical performance.\r\nSpecifically,
    our work starts from the observation that we can leverage curvature\r\ninformation
    in OBS-like fashion upon the projection step of classic iterative sparse\r\nrecovery
    algorithms such as IHT. We show for the first time that this leads both\r\nto
    improved convergence bounds under standard assumptions. Furthermore, we\r\npresent
    extensions of this approach to the practical task of obtaining accurate sparse\r\nDNNs,
    and validate it experimentally at scale for Transformer-based models on\r\nvision
    and language tasks."
acknowledged_ssus:
- _id: CampIT
acknowledgement: The authors thank the anonymous NeurIPS reviewers for their useful
  comments and feedback, the IT department from the Institute of Science and Technology
  Austria for the hardware support, and Weights and Biases for the infrastructure
  to track all our experiments. Mher Safaryan has received funding from the European
  Union’s Horizon 2020 research and innovation program under the Maria Skłodowska-Curie
  grant agreement No 101034413.
alternative_title:
- Advances in Neural Information Processing Systems
article_processing_charge: No
arxiv: 1
author:
- first_name: Diyuan
  full_name: Wu, Diyuan
  id: 1a5914c2-896a-11ed-bdf8-fb80621a0635
  last_name: Wu
- first_name: Ionut-Vlad
  full_name: Modoranu, Ionut-Vlad
  id: 449f7a18-f128-11eb-9611-9b430c0c6333
  last_name: Modoranu
- first_name: Mher
  full_name: Safaryan, Mher
  id: dd546b39-0804-11ed-9c55-ef075c39778d
  last_name: Safaryan
- first_name: Denis
  full_name: Kuznedelev, Denis
  last_name: Kuznedelev
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Wu D, Modoranu I-V, Safaryan M, Kuznedelev D, Alistarh D-A. The iterative
    optimal brain surgeon: Faster sparse recovery by leveraging second-order information.
    In: <i>38th Conference on Neural Information Processing Systems</i>. Vol 37. Neural
    Information Processing Systems Foundation; 2024.'
  apa: 'Wu, D., Modoranu, I.-V., Safaryan, M., Kuznedelev, D., &#38; Alistarh, D.-A.
    (2024). The iterative optimal brain surgeon: Faster sparse recovery by leveraging
    second-order information. In <i>38th Conference on Neural Information Processing
    Systems</i> (Vol. 37). Vancouver, Canada: Neural Information Processing Systems
    Foundation.'
  chicago: 'Wu, Diyuan, Ionut-Vlad Modoranu, Mher Safaryan, Denis Kuznedelev, and
    Dan-Adrian Alistarh. “The Iterative Optimal Brain Surgeon: Faster Sparse Recovery
    by Leveraging Second-Order Information.” In <i>38th Conference on Neural Information
    Processing Systems</i>, Vol. 37. Neural Information Processing Systems Foundation,
    2024.'
  ieee: 'D. Wu, I.-V. Modoranu, M. Safaryan, D. Kuznedelev, and D.-A. Alistarh, “The
    iterative optimal brain surgeon: Faster sparse recovery by leveraging second-order
    information,” in <i>38th Conference on Neural Information Processing Systems</i>,
    Vancouver, Canada, 2024, vol. 37.'
  ista: 'Wu D, Modoranu I-V, Safaryan M, Kuznedelev D, Alistarh D-A. 2024. The iterative
    optimal brain surgeon: Faster sparse recovery by leveraging second-order information.
    38th Conference on Neural Information Processing Systems. NeurIPS: Neural Information
    Processing Systems, Advances in Neural Information Processing Systems, vol. 37.'
  mla: 'Wu, Diyuan, et al. “The Iterative Optimal Brain Surgeon: Faster Sparse Recovery
    by Leveraging Second-Order Information.” <i>38th Conference on Neural Information
    Processing Systems</i>, vol. 37, Neural Information Processing Systems Foundation,
    2024.'
  short: D. Wu, I.-V. Modoranu, M. Safaryan, D. Kuznedelev, D.-A. Alistarh, in:, 38th
    Conference on Neural Information Processing Systems, Neural Information Processing
    Systems Foundation, 2024.
conference:
  end_date: 2024-12-15
  location: Vancouver, Canada
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2024-12-09
corr_author: '1'
date_created: 2025-04-06T22:01:32Z
date_published: 2024-12-20T00:00:00Z
date_updated: 2025-05-14T11:37:10Z
day: '20'
department:
- _id: DaAl
- _id: MaMo
ec_funded: 1
external_id:
  arxiv:
  - '2408.17163'
intvolume: '        37'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2408.17163
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: 38th Conference on Neural Information Processing Systems
publication_identifier:
  issn:
  - 1049-5258
publication_status: published
publisher: Neural Information Processing Systems Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The iterative optimal brain surgeon: Faster sparse recovery by leveraging
  second-order information'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2024'
...
---
OA_place: publisher
OA_type: gold
_id: '19519'
abstract:
- lang: eng
  text: There has been significant interest in "extreme" compression of large language
    models (LLMs), i.e. to 1-2 bits per parameter, which allows such models to be
    executed efficiently on resource-constrained devices. Existing work focused on
    improved one-shot quantization techniques and weight representations; yet, purely
    post-training approaches are reaching diminishing returns in terms of the accuracy-vs-bit-width
    trade-off. State-of-the-art quantization methods such as QuIP# and AQLM include
    fine-tuning (part of) the compressed parameters over a limited amount of calibration
    data; however, such fine-tuning techniques over compressed weights often make
    exclusive use of straight-through estimators (STE), whose performance is not well-understood
    in this setting. In this work, we question the use of STE for extreme LLM compression,
    showing that it can be sub-optimal, and perform a systematic study of quantization-aware
    fine-tuning strategies for LLMs.We propose PV-Tuning - a representation-agnostic
    framework that generalizes and improves upon existing fine-tuning strategies,
    and provides convergence guarantees in restricted cases.On the practical side,
    when used for 1-2 bit vector quantization, PV-Tuning outperforms prior techniques
    for highly-performant models such as Llama and Mistral. Using PV-Tuning, we achieve
    the first Pareto-optimal quantization for Llama-2 family models at 2 bits per
    parameter.
acknowledgement: "Authors would like to thank Vage Egiazarian, Andrei Panferov and
  Ruslan Svirschevski for their\r\nhelp and advice on AQLM codebase and running large-scale
  experiments. We also thank Philip\r\nZmushko and Artem Fedorov for helpful discussions
  during the early stages of our research. The research of Kai Yi, Konstantin Burlachenko,
  and Peter Richtárik reported in this publication was supported by funding from King
  Abdullah University of Science and Technology (KAUST) – Center of Excellence for
  Generative AI, under award number 5940. We would also like to thank our NeurIPS
  reviewers for their helpful suggestions, we specifically highlight p3Lv’s suggestions
  to consider smaller codebook sizes and evaluate PV-Tuning with QuIP#, both of which
  produced interesting findings. Finally, we thank the open-source contributors from
  llama.cpp9 and the LocalLlama10 community for discussions and inspirations on practical
  use cases of quantized language models, and in particular, Yalda Shabanzadeh and
  Arthur Aardvark for their help with improving the codebase."
alternative_title:
- Advances in Neural Information Processing Systems
article_processing_charge: No
arxiv: 1
author:
- first_name: Vladimir
  full_name: Malinovskii, Vladimir
  last_name: Malinovskii
- first_name: Denis
  full_name: Mazur, Denis
  last_name: Mazur
- first_name: Ivan
  full_name: Ilin, Ivan
  last_name: Ilin
- first_name: Denis
  full_name: Kuznedelev, Denis
  last_name: Kuznedelev
- first_name: Konstantin
  full_name: Burlachenko, Konstantin
  last_name: Burlachenko
- first_name: Kai
  full_name: Yi, Kai
  last_name: Yi
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Peter
  full_name: Richtarik, Peter
  last_name: Richtarik
citation:
  ama: 'Malinovskii V, Mazur D, Ilin I, et al. PV-tuning: Beyond straight-through
    estimation for extreme LLM compression. In: <i>38th Conference on Neural Information
    Processing Systems</i>. Vol 37. Neural Information Processing Systems Foundation;
    2024.'
  apa: 'Malinovskii, V., Mazur, D., Ilin, I., Kuznedelev, D., Burlachenko, K., Yi,
    K., … Richtarik, P. (2024). PV-tuning: Beyond straight-through estimation for
    extreme LLM compression. In <i>38th Conference on Neural Information Processing
    Systems</i> (Vol. 37). Vancouver, Canada: Neural Information Processing Systems
    Foundation.'
  chicago: 'Malinovskii, Vladimir, Denis Mazur, Ivan Ilin, Denis Kuznedelev, Konstantin
    Burlachenko, Kai Yi, Dan-Adrian Alistarh, and Peter Richtarik. “PV-Tuning: Beyond
    Straight-through Estimation for Extreme LLM Compression.” In <i>38th Conference
    on Neural Information Processing Systems</i>, Vol. 37. Neural Information Processing
    Systems Foundation, 2024.'
  ieee: 'V. Malinovskii <i>et al.</i>, “PV-tuning: Beyond straight-through estimation
    for extreme LLM compression,” in <i>38th Conference on Neural Information Processing
    Systems</i>, Vancouver, Canada, 2024, vol. 37.'
  ista: 'Malinovskii V, Mazur D, Ilin I, Kuznedelev D, Burlachenko K, Yi K, Alistarh
    D-A, Richtarik P. 2024. PV-tuning: Beyond straight-through estimation for extreme
    LLM compression. 38th Conference on Neural Information Processing Systems. NeurIPS:
    Neural Information Processing Systems, Advances in Neural Information Processing
    Systems, vol. 37.'
  mla: 'Malinovskii, Vladimir, et al. “PV-Tuning: Beyond Straight-through Estimation
    for Extreme LLM Compression.” <i>38th Conference on Neural Information Processing
    Systems</i>, vol. 37, Neural Information Processing Systems Foundation, 2024.'
  short: V. Malinovskii, D. Mazur, I. Ilin, D. Kuznedelev, K. Burlachenko, K. Yi,
    D.-A. Alistarh, P. Richtarik, in:, 38th Conference on Neural Information Processing
    Systems, Neural Information Processing Systems Foundation, 2024.
conference:
  end_date: 2024-12-15
  location: Vancouver, Canada
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2024-12-10
date_created: 2025-04-06T22:01:32Z
date_published: 2024-12-20T00:00:00Z
date_updated: 2025-05-14T10:49:20Z
day: '20'
ddc:
- '000'
department:
- _id: DaAl
external_id:
  arxiv:
  - '2405.14852'
file:
- access_level: open_access
  checksum: 54d36f947887e26d0e568b512167001a
  content_type: application/pdf
  creator: dernst
  date_created: 2025-04-07T09:17:10Z
  date_updated: 2025-04-07T09:17:10Z
  file_id: '19521'
  file_name: 2024_NeurIPS_Malinovskii.pdf
  file_size: 939712
  relation: main_file
  success: 1
file_date_updated: 2025-04-07T09:17:10Z
has_accepted_license: '1'
intvolume: '        37'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: 38th Conference on Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9798331314385'
  issn:
  - 1049-5258
publication_status: published
publisher: Neural Information Processing Systems Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'PV-tuning: Beyond straight-through estimation for extreme LLM compression'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '19520'
abstract:
- lang: eng
  text: Vertebrates exhibit a wide range of motor behaviors, ranging from swimming
    to complex limb-based movements. Here we take advantage of frog metamorphosis,
    which captures a swim-to-limb-based movement transformation during the development
    of a single organism, to explore changes in the underlying spinal circuits. We
    find that the tadpole spinal cord contains small and largely homogeneous populations
    of motor neurons (MNs) and V1 interneurons (V1s) at early escape swimming stages.
    These neuronal populations only modestly increase in number and subtype heterogeneity
    with the emergence of free swimming. In contrast, during frog metamorphosis and
    the emergence of limb movement, there is a dramatic expansion of MN and V1 interneuron
    number and transcriptional heterogeneity, culminating in cohorts of neurons that
    exhibit striking molecular similarity to mammalian motor circuits. CRISPR/Cas9-mediated
    gene disruption of the limb MN and V1 determinants FoxP1 and Engrailed-1, respectively,
    results in severe but selective deficits in tail and limb function. Our work thus
    demonstrates that neural diversity scales exponentially with increasing behavioral
    complexity and illustrates striking evolutionary conservation in the molecular
    organization and function of motor circuits across species.
acknowledged_ssus:
- _id: Bio
acknowledgement: "We would like to thank the members of the Sweeney Lab (especially
  Stavros Papadopoulos and\r\nSophie Gobeil) for their contributions to this project
  and, in addition to the lab, Graziana Gatto\r\nand Mario de Bono, for discussion,
  and support. We are also grateful to Tom Jessell and Chris\r\nKintner for their
  scientific insight and mentorship during the conception of this project. This\r\nproject
  would also not have been possible with the technical support of the Matthias Nowak,\r\nVerena
  Mayer and the Aquatics as well as the Imaging and Optics Facility support teams\r\n(ISTA).
  In addition, we thank our funding sources for providing the resources to do these\r\nexperiments:
  FTI Strategy Lower Austria Dissertation Grant Number FT121-D-046 (D.V.);\r\nHorizon
  Europe ERC Starting Grant Number 101041551 (L.B.S., F.A.T. and D.V); Special\r\nResearch
  Program (SFB) of the Austrian Science Fund (FWF) Project number F7814-B (L.B.S);\r\nNINDS
  5R35NS116858 (J.S.D); CZI grant DAF2020-225401 (DOI): 10.37921/120055ratwvi\r\n(R.H.);
  NIH grant number R01NS123116 (J.B.B); American Lebanese Syrian Associated\r\nCharities
  (ALSAC) (J.B.B.); German Academic Exchange Service (DAAD) IFI Grant Number\r\n57515251-91853472
  (Z.H.); and Project A.L.S. (S.B-M.). "
article_processing_charge: No
author:
- first_name: David
  full_name: Vijatovic, David
  id: cf391e77-ec3c-11ea-a124-d69323410b58
  last_name: Vijatovic
- first_name: 'Florina Alexandra '
  full_name: 'Toma, Florina Alexandra '
  id: 2f73f876-f128-11eb-9611-b96b5a30cb0e
  last_name: Toma
- first_name: Zoe P
  full_name: Harrington, Zoe P
  id: a8144562-32c9-11ee-b5ce-d9800628bda2
  last_name: Harrington
  orcid: 0009-0008-0158-4032
- first_name: Christoph M
  full_name: Sommer, Christoph M
  id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
  last_name: Sommer
  orcid: 0000-0003-1216-9105
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Alexandra J.
  full_name: Trevisan, Alexandra J.
  last_name: Trevisan
- first_name: Phillip
  full_name: Chapman, Phillip
  last_name: Chapman
- first_name: Mara
  full_name: Julseth, Mara
  id: 1cf464b2-dc7d-11ea-9b2f-f9b1aa9417d1
  last_name: Julseth
- first_name: Susan
  full_name: Brenner-Morton, Susan
  last_name: Brenner-Morton
- first_name: Mariano I.
  full_name: Gabitto, Mariano I.
  last_name: Gabitto
- first_name: Jeremy S.
  full_name: Dasen, Jeremy S.
  last_name: Dasen
- first_name: Jay B.
  full_name: Bikoff, Jay B.
  last_name: Bikoff
- first_name: Lora Beatrice Jaeger
  full_name: Sweeney, Lora Beatrice Jaeger
  id: 56BE8254-C4F0-11E9-8E45-0B23E6697425
  last_name: Sweeney
  orcid: 0000-0001-9242-5601
citation:
  ama: Vijatovic D, Toma FA, Harrington ZP, et al. Spinal neuron diversity scales
    exponentially with swim-to-limb transformation during frog metamorphosis. <i>bioRxiv</i>.
    doi:<a href="https://doi.org/10.1101/2024.09.20.614050">10.1101/2024.09.20.614050</a>
  apa: Vijatovic, D., Toma, F. A., Harrington, Z. P., Sommer, C. M., Hauschild, R.,
    Trevisan, A. J., … Sweeney, L. B. (n.d.). Spinal neuron diversity scales exponentially
    with swim-to-limb transformation during frog metamorphosis. <i>bioRxiv</i>. <a
    href="https://doi.org/10.1101/2024.09.20.614050">https://doi.org/10.1101/2024.09.20.614050</a>
  chicago: Vijatovic, David, Florina Alexandra  Toma, Zoe P Harrington, Christoph
    M Sommer, Robert Hauschild, Alexandra J. Trevisan, Phillip Chapman, et al. “Spinal
    Neuron Diversity Scales Exponentially with Swim-to-Limb Transformation during
    Frog Metamorphosis.” <i>BioRxiv</i>, n.d. <a href="https://doi.org/10.1101/2024.09.20.614050">https://doi.org/10.1101/2024.09.20.614050</a>.
  ieee: D. Vijatovic <i>et al.</i>, “Spinal neuron diversity scales exponentially
    with swim-to-limb transformation during frog metamorphosis,” <i>bioRxiv</i>. .
  ista: Vijatovic D, Toma FA, Harrington ZP, Sommer CM, Hauschild R, Trevisan AJ,
    Chapman P, Julseth M, Brenner-Morton S, Gabitto MI, Dasen JS, Bikoff JB, Sweeney
    LB. Spinal neuron diversity scales exponentially with swim-to-limb transformation
    during frog metamorphosis. bioRxiv, <a href="https://doi.org/10.1101/2024.09.20.614050">10.1101/2024.09.20.614050</a>.
  mla: Vijatovic, David, et al. “Spinal Neuron Diversity Scales Exponentially with
    Swim-to-Limb Transformation during Frog Metamorphosis.” <i>BioRxiv</i>, doi:<a
    href="https://doi.org/10.1101/2024.09.20.614050">10.1101/2024.09.20.614050</a>.
  short: D. Vijatovic, F.A. Toma, Z.P. Harrington, C.M. Sommer, R. Hauschild, A.J.
    Trevisan, P. Chapman, M. Julseth, S. Brenner-Morton, M.I. Gabitto, J.S. Dasen,
    J.B. Bikoff, L.B. Sweeney, BioRxiv (n.d.).
corr_author: '1'
date_created: 2025-04-07T08:48:28Z
date_published: 2024-09-27T00:00:00Z
date_updated: 2025-05-14T11:40:13Z
day: '27'
department:
- _id: LoSw
- _id: TiVo
- _id: Bio
- _id: NiBa
doi: 10.1101/2024.09.20.614050
fulldoi: https://doi.org/10.1101/2024.09.20.614050
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2024.09.20.614050
month: '09'
oa: 1
oa_version: Preprint
project:
- _id: bd73af52-d553-11ed-ba76-912049f0ac7a
  grant_number: FTI21-D-046
  name: Development of V1 interneuron diversity during swim-to-walk transition of
    Xenopus metamorphosis
- _id: ebb66355-77a9-11ec-83b8-b8ac210a4dae
  grant_number: '101041551'
  name: Development and Evolution of Tetrapod Motor Circuits
- _id: c08e9ad1-5a5b-11eb-8a69-9d1cf3b07473
  grant_number: CZI01
  name: Tools for automation and feedback microscopy
publication: bioRxiv
publication_status: submitted
status: public
title: Spinal neuron diversity scales exponentially with swim-to-limb transformation
  during frog metamorphosis
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '19800'
abstract:
- lang: eng
  text: "This archive contains all the code and data necessary to reproduce the results
    presented in the \r\n\"Mapping the attractor landscape of Boolean networks\" paper."
article_processing_charge: No
author:
- first_name: Van Giang
  full_name: trinh, Van Giang
  last_name: trinh
- first_name: Kyu Hyong
  full_name: Park, Kyu Hyong
  last_name: Park
- first_name: Samuel
  full_name: Pastva, Samuel
  id: 07c5ea74-f61c-11ec-a664-aa7c5d957b2b
  last_name: Pastva
  orcid: 0000-0003-1993-0331
- first_name: Jordan
  full_name: Rozum, Jordan
  last_name: Rozum
citation:
  ama: trinh VG, Park KH, Pastva S, Rozum J. Mapping the attractor landscape of Boolean
    networks. 2024. doi:<a href="https://doi.org/10.5281/ZENODO.13854759">10.5281/ZENODO.13854759</a>
  apa: trinh, V. G., Park, K. H., Pastva, S., &#38; Rozum, J. (2024). Mapping the
    attractor landscape of Boolean networks. Zenodo. <a href="https://doi.org/10.5281/ZENODO.13854759">https://doi.org/10.5281/ZENODO.13854759</a>
  chicago: trinh, Van Giang, Kyu Hyong Park, Samuel Pastva, and Jordan Rozum. “Mapping
    the Attractor Landscape of Boolean Networks.” Zenodo, 2024. <a href="https://doi.org/10.5281/ZENODO.13854759">https://doi.org/10.5281/ZENODO.13854759</a>.
  ieee: V. G. trinh, K. H. Park, S. Pastva, and J. Rozum, “Mapping the attractor landscape
    of Boolean networks.” Zenodo, 2024.
  ista: trinh VG, Park KH, Pastva S, Rozum J. 2024. Mapping the attractor landscape
    of Boolean networks, Zenodo, <a href="https://doi.org/10.5281/ZENODO.13854759">10.5281/ZENODO.13854759</a>.
  mla: trinh, Van Giang, et al. <i>Mapping the Attractor Landscape of Boolean Networks</i>.
    Zenodo, 2024, doi:<a href="https://doi.org/10.5281/ZENODO.13854759">10.5281/ZENODO.13854759</a>.
  short: V.G. trinh, K.H. Park, S. Pastva, J. Rozum, (2024).
date_created: 2025-06-10T07:10:01Z
date_published: 2024-09-28T00:00:00Z
date_updated: 2025-09-30T12:46:33Z
day: '28'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.5281/ZENODO.13854759
fulldoi: https://doi.org/10.5281/ZENODO.13854759
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.13854760
month: '09'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
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  - id: '19796'
    relation: used_in_publication
    status: public
status: public
title: Mapping the attractor landscape of Boolean networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: repository
_id: '19884'
abstract:
- lang: eng
  text: "This is Marlin, a Mixed Auto-Regressive Linear kernel (and the name of one
    of the planet's fastest fish), an extremely optimized FP16xINT4 matmul kernel
    aimed at LLM inference that can deliver close to ideal (4x) speedups up to batchsizes
    of 16-32 tokens (in contrast to the 1-2 tokens of prior work with comparable speedup).\r\n\r\nAdditionally,
    it includes Sparse-Marlin, an extension of the MARLIN kernels adding support to
    2:4 weight sparsity, achieving 5.3x speedups on NVIDIA GPUs (Ampere/Ada)."
article_processing_charge: No
author:
- first_name: Elias
  full_name: Frantar, Elias
  id: 09a8f98d-ec99-11ea-ae11-c063a7b7fe5f
  last_name: Frantar
- first_name: Roberto
  full_name: Castro, Roberto
  last_name: Castro
- first_name: Jiale
  full_name: Chen, Jiale
  id: 4d0a9064-1ff6-11ee-9fa6-ec046c604785
  last_name: Chen
  orcid: 0000-0001-5337-5875
- first_name: Torsten
  full_name: Hoefler, Torsten
  last_name: Hoefler
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Frantar E, Castro R, Chen J, Hoefler T, Alistarh D-A. MARLIN: Mixed-precision
    auto-regressive parallel inference on Large Language Models. 2024. doi:<a href="https://doi.org/10.5281/ZENODO.14213091">10.5281/ZENODO.14213091</a>'
  apa: 'Frantar, E., Castro, R., Chen, J., Hoefler, T., &#38; Alistarh, D.-A. (2024).
    MARLIN: Mixed-precision auto-regressive parallel inference on Large Language Models.
    Zenodo. <a href="https://doi.org/10.5281/ZENODO.14213091">https://doi.org/10.5281/ZENODO.14213091</a>'
  chicago: 'Frantar, Elias, Roberto Castro, Jiale Chen, Torsten Hoefler, and Dan-Adrian
    Alistarh. “MARLIN: Mixed-Precision Auto-Regressive Parallel Inference on Large
    Language Models.” Zenodo, 2024. <a href="https://doi.org/10.5281/ZENODO.14213091">https://doi.org/10.5281/ZENODO.14213091</a>.'
  ieee: 'E. Frantar, R. Castro, J. Chen, T. Hoefler, and D.-A. Alistarh, “MARLIN:
    Mixed-precision auto-regressive parallel inference on Large Language Models.”
    Zenodo, 2024.'
  ista: 'Frantar E, Castro R, Chen J, Hoefler T, Alistarh D-A. 2024. MARLIN: Mixed-precision
    auto-regressive parallel inference on Large Language Models, Zenodo, <a href="https://doi.org/10.5281/ZENODO.14213091">10.5281/ZENODO.14213091</a>.'
  mla: 'Frantar, Elias, et al. <i>MARLIN: Mixed-Precision Auto-Regressive Parallel
    Inference on Large Language Models</i>. Zenodo, 2024, doi:<a href="https://doi.org/10.5281/ZENODO.14213091">10.5281/ZENODO.14213091</a>.'
  short: E. Frantar, R. Castro, J. Chen, T. Hoefler, D.-A. Alistarh, (2024).
corr_author: '1'
date_created: 2025-06-24T06:09:18Z
date_published: 2024-11-24T00:00:00Z
date_updated: 2025-09-30T13:41:56Z
day: '24'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.5281/ZENODO.14213091
fulldoi: https://doi.org/10.5281/ZENODO.14213091
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/ZENODO.14213091
month: '11'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '19877'
    relation: used_for_analysis_in
    status: public
status: public
title: 'MARLIN: Mixed-precision auto-regressive parallel inference on Large Language
  Models'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_type: closed access
_id: '20039'
abstract:
- lang: eng
  text: This Comment presents a high-level protocol for data harmonization within
    large cohorts, in which it postulates four main steps including (1) expert review,
    (2) pre-statistical harmonization, (3) statistical harmonization, and (4) validation.
acknowledgement: Funded by the European Union. Complementary funding was received
  by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding
  guarantee (10041392 and 10038599). Views and opinions expressed are however those
  of the author(s) only and do not necessarily reflect those of the European Union,
  the European Health and Digital Executive Agency (HADEA) or UKRI. The European Union,
  HADEA or UKRI cannot be held responsible for them. This work received support from
  the Chinese Ministry for Science and Technology (MOST), the Horizon 2020-funded
  European Research Council advanced grant ‘STRATIFY’ (695313); the German Research
  Foundation (COPE; 675346; NE 1383/15-1 and BA 2088/7-1 (CoviDrug)), the National
  Natural Science Foundation of China grant 82150710554, the Hector II foundation
  and the German Center for Mental Health (DZPG) (01EE2301A, 01EE2304A, 01EE2301D).
article_processing_charge: No
article_type: comment
author:
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Rikka
  full_name: Kjelkenes, Rikka
  last_name: Kjelkenes
- first_name: Karina
  full_name: Jansone, Karina
  last_name: Jansone
- first_name: Barbora
  full_name: Rehák Bučková, Barbora
  last_name: Rehák Bučková
- first_name: Nathalie
  full_name: Holz, Nathalie
  last_name: Holz
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Michael A.
  full_name: Rapp, Michael A.
  last_name: Rapp
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Emanuel
  full_name: Schwarz, Emanuel
  last_name: Schwarz
- first_name: Andre
  full_name: Marquand, Andre
  last_name: Marquand
- first_name: George
  full_name: Ogoh, George
  last_name: Ogoh
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: Allan H.
  full_name: Young, Allan H.
  last_name: Young
- first_name: Sylvane
  full_name: Desrivières, Sylvane
  last_name: Desrivières
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Paul
  full_name: Thompson, Paul
  last_name: Thompson
- first_name: Ameli
  full_name: Schwalber, Ameli
  last_name: Schwalber
- first_name: Jingyu
  full_name: Liu, Jingyu
  last_name: Liu
- first_name: Vince
  full_name: Calhoun, Vince
  last_name: Calhoun
- first_name: Xiao
  full_name: Chang, Xiao
  last_name: Chang
- first_name: Yunman
  full_name: Xia, Yunman
  last_name: Xia
- first_name: Yanting
  full_name: Gong, Yanting
  last_name: Gong
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Paul
  full_name: Renner, Paul
  last_name: Renner
- first_name: Sören
  full_name: Hese, Sören
  last_name: Hese
- first_name: Arantxa
  full_name: Giner, Arantxa
  last_name: Giner
- first_name: Mavi
  full_name: Sanchez, Mavi
  last_name: Sanchez
- first_name: Elena
  full_name: Alvarez, Elena
  last_name: Alvarez
- first_name: Bernhard
  full_name: Spanlang, Bernhard
  last_name: Spanlang
- first_name: Charlie
  full_name: Pearmund, Charlie
  last_name: Pearmund
- first_name: Anastasios Polykarpos
  full_name: Athanasiadis, Anastasios Polykarpos
  last_name: Athanasiadis
- first_name: Lisa
  full_name: Otten, Lisa
  last_name: Otten
- first_name: Séverine
  full_name: Pitel, Séverine
  last_name: Pitel
- first_name: Spase
  full_name: Petkoski, Spase
  last_name: Petkoski
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Karen
  full_name: Schmitt, Karen
  last_name: Schmitt
- first_name: Johannes
  full_name: Wilbertz, Johannes
  last_name: Wilbertz
- first_name: Myrto
  full_name: Patraskaki, Myrto
  last_name: Patraskaki
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Stefanie
  full_name: Heilmann-Heimbach, Stefanie
  last_name: Heilmann-Heimbach
- first_name: Carina M.
  full_name: Mathey, Carina M.
  last_name: Mathey
- first_name: Abigail
  full_name: Miller, Abigail
  last_name: Miller
- first_name: Isabelle
  full_name: Claus, Isabelle
  last_name: Claus
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Andreas J.
  full_name: Forstner, Andreas J.
  last_name: Forstner
- first_name: Alvaro
  full_name: Pastor, Alvaro
  last_name: Pastor
- first_name: Jaime
  full_name: Gallego, Jaime
  last_name: Gallego
- first_name: Francisco Eiroa
  full_name: Orosa, Francisco Eiroa
  last_name: Orosa
- first_name: Guillem Feixas
  full_name: Viapiana, Guillem Feixas
  last_name: Viapiana
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Lena
  full_name: Marr, Lena
  id: 4406F586-F248-11E8-B48F-1D18A9856A87
  last_name: Marr
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Sarah Jane
  full_name: Böttger, Sarah Jane
  last_name: Böttger
- first_name: Mira
  full_name: Tschorn, Mira
  last_name: Tschorn
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Helga
  full_name: Ask, Helga
  last_name: Ask
- first_name: Sara
  full_name: Fernandez, Sara
  last_name: Fernandez
- first_name: Dennis
  full_name: Van Der Meer, Dennis
  last_name: Van Der Meer
- first_name: Lars T.
  full_name: Westlye, Lars T.
  last_name: Westlye
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Rieke
  full_name: Aden, Rieke
  last_name: Aden
- first_name: Beke
  full_name: Seefried, Beke
  last_name: Seefried
- first_name: Sebastian
  full_name: Siehl, Sebastian
  last_name: Siehl
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Argyris
  full_name: Stringaris, Argyris
  last_name: Stringaris
- first_name: Heike
  full_name: Tost, Heike
  last_name: Tost
- first_name: Andreas
  full_name: Meyer-Lindenberg, Andreas
  last_name: Meyer-Lindenberg
- first_name: Nina
  full_name: Christmann, Nina
  last_name: Christmann
- first_name: Jamie
  full_name: Banks, Jamie
  last_name: Banks
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tatjana
  full_name: Schütz, Tatjana
  last_name: Schütz
- first_name: Ulrike Helene
  full_name: Taron, Ulrike Helene
  last_name: Taron
- first_name: Roland
  full_name: Eils, Roland
  last_name: Eils
- first_name: Jean Charles
  full_name: Roy, Jean Charles
  last_name: Roy
- first_name: Tristram A.
  full_name: Lett, Tristram A.
  last_name: Lett
- first_name: Hedi
  full_name: Kebir, Hedi
  last_name: Kebir
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Marcel
  full_name: Jentsch, Marcel
  last_name: Jentsch
- first_name: Emin
  full_name: Serin, Emin
  last_name: Serin
- first_name: Antoine
  full_name: Bernas, Antoine
  last_name: Bernas
- first_name: Nilakshi
  full_name: Vaidya, Nilakshi
  last_name: Vaidya
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Andreas
  full_name: Heinz, Andreas
  last_name: Heinz
citation:
  ama: Neidhart M, Kjelkenes R, Jansone K, et al. A protocol for data harmonization
    in large cohorts. <i>Nature Mental Health</i>. 2024;2(10):1134-1137. doi:<a href="https://doi.org/10.1038/s44220-024-00315-0">10.1038/s44220-024-00315-0</a>
  apa: Neidhart, M., Kjelkenes, R., Jansone, K., Rehák Bučková, B., Holz, N., Nees,
    F., … Heinz, A. (2024). A protocol for data harmonization in large cohorts. <i>Nature
    Mental Health</i>. Springer Nature. <a href="https://doi.org/10.1038/s44220-024-00315-0">https://doi.org/10.1038/s44220-024-00315-0</a>
  chicago: Neidhart, Maja, Rikka Kjelkenes, Karina Jansone, Barbora Rehák Bučková,
    Nathalie Holz, Frauke Nees, Henrik Walter, et al. “A Protocol for Data Harmonization
    in Large Cohorts.” <i>Nature Mental Health</i>. Springer Nature, 2024. <a href="https://doi.org/10.1038/s44220-024-00315-0">https://doi.org/10.1038/s44220-024-00315-0</a>.
  ieee: M. Neidhart <i>et al.</i>, “A protocol for data harmonization in large cohorts,”
    <i>Nature Mental Health</i>, vol. 2, no. 10. Springer Nature, pp. 1134–1137, 2024.
  ista: Neidhart M, Kjelkenes R, Jansone K, Rehák Bučková B, Holz N, Nees F, Walter
    H, Schumann G, Rapp MA, Banaschewski T, Schwarz E, Marquand A, Ogoh G, Stahl B,
    Young AH, Desrivières S, Clinton N, Thompson P, Schwalber A, Liu J, Calhoun V,
    Chang X, Xia Y, Gong Y, Jia T, Renner P, Hese S, Giner A, Sanchez M, Alvarez E,
    Spanlang B, Pearmund C, Athanasiadis AP, Otten L, Pitel S, Petkoski S, Jirsa V,
    Schmitt K, Wilbertz J, Patraskaki M, Sommer P, Heilmann-Heimbach S, Mathey CM,
    Miller A, Claus I, Nöthen MM, Hoffmann P, Forstner AJ, Pastor A, Gallego J, Orosa
    FE, Viapiana GF, Slater M, Marr L, Novarino G, Böttger SJ, Tschorn M, Rapp M,
    Ask H, Fernandez S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried
    B, Siehl S, Nees F, Stringaris A, Tost H, Meyer-Lindenberg A, Christmann N, Banks
    J, Schepanski K, Schütz T, Taron UH, Eils R, Roy JC, Lett TA, Kebir H, Polemiti
    E, Hitchen E, Jentsch M, Serin E, Bernas A, Vaidya N, Twardziok S, Ralser M, Heinz
    A. 2024. A protocol for data harmonization in large cohorts. Nature Mental Health.
    2(10), 1134–1137.
  mla: Neidhart, Maja, et al. “A Protocol for Data Harmonization in Large Cohorts.”
    <i>Nature Mental Health</i>, vol. 2, no. 10, Springer Nature, 2024, pp. 1134–37,
    doi:<a href="https://doi.org/10.1038/s44220-024-00315-0">10.1038/s44220-024-00315-0</a>.
  short: M. Neidhart, R. Kjelkenes, K. Jansone, B. Rehák Bučková, N. Holz, F. Nees,
    H. Walter, G. Schumann, M.A. Rapp, T. Banaschewski, E. Schwarz, A. Marquand, G.
    Ogoh, B. Stahl, A.H. Young, S. Desrivières, N. Clinton, P. Thompson, A. Schwalber,
    J. Liu, V. Calhoun, X. Chang, Y. Xia, Y. Gong, T. Jia, P. Renner, S. Hese, A.
    Giner, M. Sanchez, E. Alvarez, B. Spanlang, C. Pearmund, A.P. Athanasiadis, L.
    Otten, S. Pitel, S. Petkoski, V. Jirsa, K. Schmitt, J. Wilbertz, M. Patraskaki,
    P. Sommer, S. Heilmann-Heimbach, C.M. Mathey, A. Miller, I. Claus, M.M. Nöthen,
    P. Hoffmann, A.J. Forstner, A. Pastor, J. Gallego, F.E. Orosa, G.F. Viapiana,
    M. Slater, L. Marr, G. Novarino, S.J. Böttger, M. Tschorn, M. Rapp, H. Ask, S.
    Fernandez, D. Van Der Meer, L.T. Westlye, O.A. Andreassen, R. Aden, B. Seefried,
    S. Siehl, F. Nees, A. Stringaris, H. Tost, A. Meyer-Lindenberg, N. Christmann,
    J. Banks, K. Schepanski, T. Schütz, U.H. Taron, R. Eils, J.C. Roy, T.A. Lett,
    H. Kebir, E. Polemiti, E. Hitchen, M. Jentsch, E. Serin, A. Bernas, N. Vaidya,
    S. Twardziok, M. Ralser, A. Heinz, Nature Mental Health 2 (2024) 1134–1137.
date_created: 2025-07-20T22:02:04Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2025-07-22T08:59:10Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-024-00315-0
fulldoi: https://doi.org/10.1038/s44220-024-00315-0
intvolume: '         2'
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
page: 1134-1137
publication: Nature Mental Health
publication_identifier:
  eissn:
  - 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A protocol for data harmonization in large cohorts
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2024'
...
---
OA_place: publisher
OA_type: free access
_id: '20057'
abstract:
- lang: eng
  text: In article number 2305128, Qing Sun, Shang Wang, Yanhong Tian, Andreu Cabot,
    and co-workers report an investigation of the energy-storage mechanism of a layered
    Bi2Te3-based cathode for aqueous zinc-ion batteries (ZIBs). They demonstrate that
    the zinc ion is not inserted into the cathode as previously assumed; in contrast,
    proton charge-storage dominates the process. They also demonstrate the great application
    prospects of aqueous ZIBs in flexible electronics via jet printing technology.
article_number: '2470004'
article_processing_charge: No
author:
- first_name: Guifang
  full_name: Zeng, Guifang
  last_name: Zeng
- first_name: Qing
  full_name: Sun, Qing
  last_name: Sun
- first_name: Sharona
  full_name: Horta, Sharona
  id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
  last_name: Horta
- first_name: Shang
  full_name: Wang, Shang
  last_name: Wang
- first_name: Xuan
  full_name: Lu, Xuan
  last_name: Lu
- first_name: Chao Yue
  full_name: Zhang, Chao Yue
  last_name: Zhang
- first_name: Jing
  full_name: Li, Jing
  last_name: Li
- first_name: Junshan
  full_name: Li, Junshan
  last_name: Li
- first_name: Lijie
  full_name: Ci, Lijie
  last_name: Ci
- first_name: Yanhong
  full_name: Tian, Yanhong
  last_name: Tian
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Zeng G, Sun Q, Horta S, et al. <i>A Layered Bi2Te3@PPy Cathode for Aqueous
    Zinc‐Ion Batteries: Mechanism and Application in Printed Flexible Batteries</i>.
    Vol 36. Wiley; 2024. doi:<a href="https://doi.org/10.1002/adma.202470004">10.1002/adma.202470004</a>'
  apa: 'Zeng, G., Sun, Q., Horta, S., Wang, S., Lu, X., Zhang, C. Y., … Cabot, A.
    (2024). <i>A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries: Mechanism
    and application in printed flexible batteries</i>. <i>Advanced Materials</i> (Vol.
    36). Wiley. <a href="https://doi.org/10.1002/adma.202470004">https://doi.org/10.1002/adma.202470004</a>'
  chicago: 'Zeng, Guifang, Qing Sun, Sharona Horta, Shang Wang, Xuan Lu, Chao Yue
    Zhang, Jing Li, et al. <i>A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion Batteries:
    Mechanism and Application in Printed Flexible Batteries</i>. <i>Advanced Materials</i>.
    Vol. 36. Wiley, 2024. <a href="https://doi.org/10.1002/adma.202470004">https://doi.org/10.1002/adma.202470004</a>.'
  ieee: 'G. Zeng <i>et al.</i>, <i>A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion
    batteries: Mechanism and application in printed flexible batteries</i>, vol. 36,
    no. 1. Wiley, 2024.'
  ista: 'Zeng G, Sun Q, Horta S, Wang S, Lu X, Zhang CY, Li J, Li J, Ci L, Tian Y,
    Ibáñez M, Cabot A. 2024. A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries:
    Mechanism and application in printed flexible batteries, Wiley,p.'
  mla: 'Zeng, Guifang, et al. “A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion Batteries:
    Mechanism and Application in Printed Flexible Batteries.” <i>Advanced Materials</i>,
    vol. 36, no. 1, 2470004, Wiley, 2024, doi:<a href="https://doi.org/10.1002/adma.202470004">10.1002/adma.202470004</a>.'
  short: 'G. Zeng, Q. Sun, S. Horta, S. Wang, X. Lu, C.Y. Zhang, J. Li, J. Li, L.
    Ci, Y. Tian, M. Ibáñez, A. Cabot, A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion
    Batteries: Mechanism and Application in Printed Flexible Batteries, Wiley, 2024.'
date_created: 2025-07-21T08:53:06Z
date_published: 2024-01-04T00:00:00Z
date_updated: 2026-06-18T18:19:28Z
day: '04'
ddc:
- '530'
department:
- _id: MaIb
doi: 10.1002/adma.202470004
fulldoi: https://doi.org/10.1002/adma.202470004
intvolume: '        36'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/adma.202470004
month: '01'
oa: 1
oa_version: Published Version
publication: Advanced Materials
publication_identifier:
  eissn:
  - 1521-4095
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: 'A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries: Mechanism and
  application in printed flexible batteries'
type: other_academic_publication
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2024'
...
---
_id: '20121'
abstract:
- lang: eng
  text: PyDaddy is an open source package which is a key contribution of the manuscript
    Nabeel et al, arXiv:2205.02645. The basic scientific premise for this package
    is to discover the nature of stochasticity in ecological time series datasets.
    It is well known that the stochasticity can affect the dynamics of ecological
    systems in counter-intuitive ways. Without understanding the equations (typically,
    in the form of stochastic differential equations or SDEs, in short) that govern
    the dynamics of populations or ecosystems, it's challenging to determine the impact
    of randomness on real datasets. In this manuscript and accompanying package, we
    introduce a methodology for discovering equations (SDEs) that transforms time
    series data of state variables into stochastic differential equations. This approach
    merges traditional stochastic calculus with modern equation-discovery techniques.
    We showcase the generality of our method through various applications and discuss
    its limitations and potential pitfalls, offering diagnostic measures to address
    these challenges.
acknowledgement: This study was partially funded by Science and Engineering Research
  Board, Department of Science and Technology, Government of India to Vishwesha Guttal.
article_processing_charge: No
author:
- first_name: Arshed
  full_name: Nabeel, Arshed
  last_name: Nabeel
- first_name: Ashwin
  full_name: Karichannavar, Ashwin
  last_name: Karichannavar
- first_name: Shuaib
  full_name: Palathingal, Shuaib
  last_name: Palathingal
- first_name: Jitesh
  full_name: Jhawar, Jitesh
  last_name: Jhawar
- first_name: David
  full_name: Brückner, David
  id: e1e86031-6537-11eb-953a-f7ab92be508d
  last_name: Brückner
  orcid: 0000-0001-7205-2975
- first_name: Masila
  full_name: Danny Raj, Masila
  last_name: Danny Raj
- first_name: Vishwesha
  full_name: Guttal, Vishwesha
  last_name: Guttal
citation:
  ama: 'Nabeel A, Karichannavar A, Palathingal S, et al. PyDaddy: A Python Package
    for Discovering SDEs from Time Series Data. 2024. doi:<a href="https://doi.org/10.5281/ZENODO.7137151">10.5281/ZENODO.7137151</a>'
  apa: 'Nabeel, A., Karichannavar, A., Palathingal, S., Jhawar, J., Brückner, D.,
    Danny Raj, M., &#38; Guttal, V. (2024). PyDaddy: A Python Package for Discovering
    SDEs from Time Series Data. Zenodo. <a href="https://doi.org/10.5281/ZENODO.7137151">https://doi.org/10.5281/ZENODO.7137151</a>'
  chicago: 'Nabeel, Arshed, Ashwin Karichannavar, Shuaib Palathingal, Jitesh Jhawar,
    David Brückner, Masila Danny Raj, and Vishwesha Guttal. “PyDaddy: A Python Package
    for Discovering SDEs from Time Series Data.” Zenodo, 2024. <a href="https://doi.org/10.5281/ZENODO.7137151">https://doi.org/10.5281/ZENODO.7137151</a>.'
  ieee: 'A. Nabeel <i>et al.</i>, “PyDaddy: A Python Package for Discovering SDEs
    from Time Series Data.” Zenodo, 2024.'
  ista: 'Nabeel A, Karichannavar A, Palathingal S, Jhawar J, Brückner D, Danny Raj
    M, Guttal V. 2024. PyDaddy: A Python Package for Discovering SDEs from Time Series
    Data, Zenodo, <a href="https://doi.org/10.5281/ZENODO.7137151">10.5281/ZENODO.7137151</a>.'
  mla: 'Nabeel, Arshed, et al. <i>PyDaddy: A Python Package for Discovering SDEs from
    Time Series Data</i>. Zenodo, 2024, doi:<a href="https://doi.org/10.5281/ZENODO.7137151">10.5281/ZENODO.7137151</a>.'
  short: A. Nabeel, A. Karichannavar, S. Palathingal, J. Jhawar, D. Brückner, M. Danny
    Raj, V. Guttal, (2024).
date_created: 2025-08-05T06:49:59Z
date_published: 2024-09-18T00:00:00Z
date_updated: 2025-09-30T14:14:42Z
day: '18'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.5281/ZENODO.7137151
fulldoi: https://doi.org/10.5281/ZENODO.7137151
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.7137151
month: '09'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '20056'
    relation: used_for_analysis_in
    status: public
status: public
title: 'PyDaddy: A Python Package for Discovering SDEs from Time Series Data'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_type: closed access
_id: '20156'
abstract:
- lang: eng
  text: Integrative analyses that incorporate different levels of ‘-omics’ data represent
    a powerful tool for deciphering the biological mechanisms that underlie environmental
    influences on mental health and disease. This Comment highlights various aspects
    of such multi-omics approaches, using the example of the EU-funded environMENTAL
    project.
acknowledgement: 'This work was supported by the Horizon 2021 (grant 101057429) and
  UK Research and Innovation (grants 10038599 and 10041392)-funded project environMENTAL.
  Other funding included the Medical Research Council and Medical Research Foundation
  (MR/R00465X/, MRF-058-0004-RG-DESRI, ‘ESTRA’- Neurobiological underpinning of eating
  disorders: integrative biopsychosocial longitudinal analyses in adolescents; and
  MR/S020306/1, MRF-058-0009-RG-DESR-C0759 ‘ESTRA’-Establishing causal relationships
  between biopsychosocial predictors and correlates of eating disorders and their
  mediation by neural pathways), the EU-funded FP6 Integrated Project IMAGEN (reinforcement-related
  behavior in normal brain function and psychopathology; LSHM-CT- 2007-037286), the
  Horizon 2020-funded European Research Council advanced grant for STRATIFY (brain
  network-based stratification of reinforcement-related disorders; 695313) and the
  National Institute for Health Research (NIHR) Biomedical Research Centre at South
  London and Maudsley NHS Foundation Trust and King’s College London. This paper represents
  independent research, partly funded by the NIHR Maudsley Biomedical Research Centre
  at South London and Maudsley NHS Foundation Trust and King’s College London. The
  views expressed are those of the authors and not necessarily those of the NIHR or
  the Department of Health and Social Care. The authors thank C. Schmäl for proofreading
  the manuscript.'
article_processing_charge: No
article_type: comment
author:
- first_name: Sylvane
  full_name: Desrivières, Sylvane
  last_name: Desrivières
- first_name: Abigail
  full_name: Miller, Abigail
  last_name: Miller
- first_name: Carina M.
  full_name: Mathey, Carina M.
  last_name: Mathey
- first_name: Xinyang
  full_name: Yu, Xinyang
  last_name: Yu
- first_name: Di
  full_name: Chen, Di
  last_name: Chen
- first_name: Kofoworola
  full_name: Agunbiade, Kofoworola
  last_name: Agunbiade
- first_name: Stefanie
  full_name: Heilmann-Heimbach, Stefanie
  last_name: Heilmann-Heimbach
- first_name: Andreas J.
  full_name: Forstner, Andreas J.
  last_name: Forstner
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: George
  full_name: Ogoh, George
  last_name: Ogoh
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: Allan H.
  full_name: Young, Allan H.
  last_name: Young
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Paul
  full_name: Thompson, Paul
  last_name: Thompson
- first_name: Ameli
  full_name: Schwalber, Ameli
  last_name: Schwalber
- first_name: Jingyu
  full_name: Liu, Jingyu
  last_name: Liu
- first_name: Vince
  full_name: Calhoun, Vince
  last_name: Calhoun
- first_name: Xiao
  full_name: Chang, Xiao
  last_name: Chang
- first_name: Yunman
  full_name: Xia, Yunman
  last_name: Xia
- first_name: Yanting
  full_name: Gong, Yanting
  last_name: Gong
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Paul
  full_name: Renner, Paul
  last_name: Renner
- first_name: Sören
  full_name: Hese, Sören
  last_name: Hese
- first_name: Arantxa
  full_name: Giner, Arantxa
  last_name: Giner
- first_name: Mavi
  full_name: Sanchez, Mavi
  last_name: Sanchez
- first_name: Elena
  full_name: Alvarez, Elena
  last_name: Alvarez
- first_name: Bernhard
  full_name: Spanlang, Bernhard
  last_name: Spanlang
- first_name: Charlie
  full_name: Pearmund, Charlie
  last_name: Pearmund
- first_name: Anastasios Polykarpos
  full_name: Athanasiadis, Anastasios Polykarpos
  last_name: Athanasiadis
- first_name: Lisa
  full_name: Otten, Lisa
  last_name: Otten
- first_name: Séverine
  full_name: Pitel, Séverine
  last_name: Pitel
- first_name: Spase
  full_name: Petkoski, Spase
  last_name: Petkoski
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Karen
  full_name: Schmitt, Karen
  last_name: Schmitt
- first_name: Johannes
  full_name: Wilbertz, Johannes
  last_name: Wilbertz
- first_name: Myrto
  full_name: Patraskaki, Myrto
  last_name: Patraskaki
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Isabelle
  full_name: Claus, Isabelle
  last_name: Claus
- first_name: Alvaro
  full_name: Pastor, Alvaro
  last_name: Pastor
- first_name: Jaime
  full_name: Gallego, Jaime
  last_name: Gallego
- first_name: Francisco Eiroa
  full_name: Orosa, Francisco Eiroa
  last_name: Orosa
- first_name: Guillem Feixas
  full_name: Viapiana, Guillem Feixas
  last_name: Viapiana
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Lena
  full_name: Marr, Lena
  id: 4406F586-F248-11E8-B48F-1D18A9856A87
  last_name: Marr
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Andre
  full_name: Marquand, Andre
  last_name: Marquand
- first_name: Sarah Jane
  full_name: Böttger, Sarah Jane
  last_name: Böttger
- first_name: Mira
  full_name: Tschorn, Mira
  last_name: Tschorn
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Helga
  full_name: Ask, Helga
  last_name: Ask
- first_name: Rikka
  full_name: Kjelkenes, Rikka
  last_name: Kjelkenes
- first_name: Sara
  full_name: Fernandez, Sara
  last_name: Fernandez
- first_name: Dennis
  full_name: Van Der Meer, Dennis
  last_name: Van Der Meer
- first_name: Lars T.
  full_name: Westlye, Lars T.
  last_name: Westlye
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Rieke
  full_name: Aden, Rieke
  last_name: Aden
- first_name: Beke
  full_name: Seefried, Beke
  last_name: Seefried
- first_name: Sebastian
  full_name: Siehl, Sebastian
  last_name: Siehl
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Argyris
  full_name: Stringaris, Argyris
  last_name: Stringaris
- first_name: Emanuel
  full_name: Schwarz, Emanuel
  last_name: Schwarz
- first_name: Nathalie
  full_name: Holz, Nathalie
  last_name: Holz
- first_name: Heike
  full_name: Tost, Heike
  last_name: Tost
- first_name: Andreas
  full_name: Meyer-Lindenberg, Andreas
  last_name: Meyer-Lindenberg
- first_name: Nina
  full_name: Christmann, Nina
  last_name: Christmann
- first_name: Karina
  full_name: Jansone, Karina
  last_name: Jansone
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Jamie
  full_name: Banks, Jamie
  last_name: Banks
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tatjana
  full_name: Schütz, Tatjana
  last_name: Schütz
- first_name: Ulrike Helene
  full_name: Taron, Ulrike Helene
  last_name: Taron
- first_name: Roland
  full_name: Eils, Roland
  last_name: Eils
- first_name: Jean Charles
  full_name: Roy, Jean Charles
  last_name: Roy
- first_name: Tristram A.
  full_name: Lett, Tristram A.
  last_name: Lett
- first_name: Hedi
  full_name: Kebir, Hedi
  last_name: Kebir
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Marcel
  full_name: Jentsch, Marcel
  last_name: Jentsch
- first_name: Emin
  full_name: Serin, Emin
  last_name: Serin
- first_name: Antoine
  full_name: Bernas, Antoine
  last_name: Bernas
- first_name: Nilakshi
  full_name: Vaidya, Nilakshi
  last_name: Vaidya
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Andreas
  full_name: Heinz, Andreas
  last_name: Heinz
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
citation:
  ama: Desrivières S, Miller A, Mathey CM, et al. Multi-omics analyses of the environMENTAL
    project provide insights into mental health and disease. <i>Nature Mental Health</i>.
    2024;2(10):1131-1133. doi:<a href="https://doi.org/10.1038/s44220-024-00317-y">10.1038/s44220-024-00317-y</a>
  apa: Desrivières, S., Miller, A., Mathey, C. M., Yu, X., Chen, D., Agunbiade, K.,
    … Walter, H. (2024). Multi-omics analyses of the environMENTAL project provide
    insights into mental health and disease. <i>Nature Mental Health</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s44220-024-00317-y">https://doi.org/10.1038/s44220-024-00317-y</a>
  chicago: Desrivières, Sylvane, Abigail Miller, Carina M. Mathey, Xinyang Yu, Di
    Chen, Kofoworola Agunbiade, Stefanie Heilmann-Heimbach, et al. “Multi-Omics Analyses
    of the EnvironMENTAL Project Provide Insights into Mental Health and Disease.”
    <i>Nature Mental Health</i>. Springer Nature, 2024. <a href="https://doi.org/10.1038/s44220-024-00317-y">https://doi.org/10.1038/s44220-024-00317-y</a>.
  ieee: S. Desrivières <i>et al.</i>, “Multi-omics analyses of the environMENTAL project
    provide insights into mental health and disease,” <i>Nature Mental Health</i>,
    vol. 2, no. 10. Springer Nature, pp. 1131–1133, 2024.
  ista: Desrivières S, Miller A, Mathey CM, Yu X, Chen D, Agunbiade K, Heilmann-Heimbach
    S, Forstner AJ, Schumann G, Hoffmann P, Nöthen MM, Ogoh G, Stahl B, Young AH,
    Clinton N, Thompson P, Schwalber A, Liu J, Calhoun V, Chang X, Xia Y, Gong Y,
    Jia T, Renner P, Hese S, Giner A, Sanchez M, Alvarez E, Spanlang B, Pearmund C,
    Athanasiadis AP, Otten L, Pitel S, Petkoski S, Jirsa V, Schmitt K, Wilbertz J,
    Patraskaki M, Sommer P, Claus I, Pastor A, Gallego J, Orosa FE, Viapiana GF, Slater
    M, Marr L, Novarino G, Marquand A, Böttger SJ, Tschorn M, Rapp M, Ask H, Kjelkenes
    R, Fernandez S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried B,
    Siehl S, Nees F, Neidhart M, Stringaris A, Schwarz E, Holz N, Tost H, Meyer-Lindenberg
    A, Christmann N, Jansone K, Banaschewski T, Banks J, Schepanski K, Schütz T, Taron
    UH, Eils R, Roy JC, Lett TA, Kebir H, Polemiti E, Hitchen E, Jentsch M, Serin
    E, Bernas A, Vaidya N, Twardziok S, Ralser M, Heinz A, Walter H. 2024. Multi-omics
    analyses of the environMENTAL project provide insights into mental health and
    disease. Nature Mental Health. 2(10), 1131–1133.
  mla: Desrivières, Sylvane, et al. “Multi-Omics Analyses of the EnvironMENTAL Project
    Provide Insights into Mental Health and Disease.” <i>Nature Mental Health</i>,
    vol. 2, no. 10, Springer Nature, 2024, pp. 1131–33, doi:<a href="https://doi.org/10.1038/s44220-024-00317-y">10.1038/s44220-024-00317-y</a>.
  short: S. Desrivières, A. Miller, C.M. Mathey, X. Yu, D. Chen, K. Agunbiade, S.
    Heilmann-Heimbach, A.J. Forstner, G. Schumann, P. Hoffmann, M.M. Nöthen, G. Ogoh,
    B. Stahl, A.H. Young, N. Clinton, P. Thompson, A. Schwalber, J. Liu, V. Calhoun,
    X. Chang, Y. Xia, Y. Gong, T. Jia, P. Renner, S. Hese, A. Giner, M. Sanchez, E.
    Alvarez, B. Spanlang, C. Pearmund, A.P. Athanasiadis, L. Otten, S. Pitel, S. Petkoski,
    V. Jirsa, K. Schmitt, J. Wilbertz, M. Patraskaki, P. Sommer, I. Claus, A. Pastor,
    J. Gallego, F.E. Orosa, G.F. Viapiana, M. Slater, L. Marr, G. Novarino, A. Marquand,
    S.J. Böttger, M. Tschorn, M. Rapp, H. Ask, R. Kjelkenes, S. Fernandez, D. Van
    Der Meer, L.T. Westlye, O.A. Andreassen, R. Aden, B. Seefried, S. Siehl, F. Nees,
    M. Neidhart, A. Stringaris, E. Schwarz, N. Holz, H. Tost, A. Meyer-Lindenberg,
    N. Christmann, K. Jansone, T. Banaschewski, J. Banks, K. Schepanski, T. Schütz,
    U.H. Taron, R. Eils, J.C. Roy, T.A. Lett, H. Kebir, E. Polemiti, E. Hitchen, M.
    Jentsch, E. Serin, A. Bernas, N. Vaidya, S. Twardziok, M. Ralser, A. Heinz, H.
    Walter, Nature Mental Health 2 (2024) 1131–1133.
date_created: 2025-08-10T22:01:30Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2025-08-11T06:44:03Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-024-00317-y
fulldoi: https://doi.org/10.1038/s44220-024-00317-y
intvolume: '         2'
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
page: 1131-1133
publication: Nature Mental Health
publication_identifier:
  eissn:
  - 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multi-omics analyses of the environMENTAL project provide insights into mental
  health and disease
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2024'
...
---
OA_type: closed access
_id: '20157'
abstract:
- lang: eng
  text: The focus of much of contemporary research ethics is on compliance with established
    protocols. However, large data-driven neuroscience research raises new ethical
    concerns that have no agreed-upon solution. Here we reflect on these challenges
    and propose better integration of public and patient involvement in this evolving
    landscape.
acknowledgement: Funded provided by the European Union. Complementary funding was
  received by UK Research and Innovation (UKRI) under the UK government’s Horizon
  Europe funding guarantee (10131373and 10038599) and Ministry of Science and Technology
  of China (MOST) National Key Project of ‘Inter-governmental International Scientific
  and Technological Innovation Cooperation’ (2023YFE0199700).
article_number: 1128-1130
article_processing_charge: No
article_type: comment
author:
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: George
  full_name: Ogoh, George
  last_name: Ogoh
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: Allan H.
  full_name: Young, Allan H.
  last_name: Young
- first_name: Sylvane
  full_name: Desrivières, Sylvane
  last_name: Desrivières
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Paul
  full_name: Thompson, Paul
  last_name: Thompson
- first_name: Ameli
  full_name: Schwalber, Ameli
  last_name: Schwalber
- first_name: Jingyu
  full_name: Liu, Jingyu
  last_name: Liu
- first_name: Vince
  full_name: Calhoun, Vince
  last_name: Calhoun
- first_name: Xiao
  full_name: Chang, Xiao
  last_name: Chang
- first_name: Yunman
  full_name: Xia, Yunman
  last_name: Xia
- first_name: Yanting
  full_name: Gong, Yanting
  last_name: Gong
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Paul
  full_name: Renner, Paul
  last_name: Renner
- first_name: Sören
  full_name: Hese, Sören
  last_name: Hese
- first_name: Arantxa
  full_name: Giner, Arantxa
  last_name: Giner
- first_name: Mavi
  full_name: Sanchez, Mavi
  last_name: Sanchez
- first_name: Elena
  full_name: Alvarez, Elena
  last_name: Alvarez
- first_name: Bernhard
  full_name: Spanlang, Bernhard
  last_name: Spanlang
- first_name: Charlie
  full_name: Pearmund, Charlie
  last_name: Pearmund
- first_name: Anastasios Polykarpos
  full_name: Athanasiadis, Anastasios Polykarpos
  last_name: Athanasiadis
- first_name: Lisa
  full_name: Otten, Lisa
  last_name: Otten
- first_name: Séverine
  full_name: Pitel, Séverine
  last_name: Pitel
- first_name: Spase
  full_name: Petkoski, Spase
  last_name: Petkoski
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Karen
  full_name: Schmitt, Karen
  last_name: Schmitt
- first_name: Johannes
  full_name: Wilbertz, Johannes
  last_name: Wilbertz
- first_name: Myrto
  full_name: Patraskaki, Myrto
  last_name: Patraskaki
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Stefanie
  full_name: Heilmann-Heimbach, Stefanie
  last_name: Heilmann-Heimbach
- first_name: Carina M.
  full_name: Mathey, Carina M.
  last_name: Mathey
- first_name: Abigail
  full_name: Miller, Abigail
  last_name: Miller
- first_name: Isabelle
  full_name: Claus, Isabelle
  last_name: Claus
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Andreas J.
  full_name: Forstner, Andreas J.
  last_name: Forstner
- first_name: Alvaro
  full_name: Pastor, Alvaro
  last_name: Pastor
- first_name: Jaime
  full_name: Gallego, Jaime
  last_name: Gallego
- first_name: Francisco Eiroa
  full_name: Orosa, Francisco Eiroa
  last_name: Orosa
- first_name: Guillem Feixas
  full_name: Viapiana, Guillem Feixas
  last_name: Viapiana
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Lena
  full_name: Marr, Lena
  id: 4406F586-F248-11E8-B48F-1D18A9856A87
  last_name: Marr
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Andre
  full_name: Marquand, Andre
  last_name: Marquand
- first_name: Sarah Jane
  full_name: Böttger, Sarah Jane
  last_name: Böttger
- first_name: Mira
  full_name: Tschorn, Mira
  last_name: Tschorn
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Helga
  full_name: Ask, Helga
  last_name: Ask
- first_name: Rikka
  full_name: Kjelkenes, Rikka
  last_name: Kjelkenes
- first_name: Sara
  full_name: Fernandez, Sara
  last_name: Fernandez
- first_name: Dennis
  full_name: Van Der Meer, Dennis
  last_name: Van Der Meer
- first_name: Lars T.
  full_name: Westlye, Lars T.
  last_name: Westlye
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Rieke
  full_name: Aden, Rieke
  last_name: Aden
- first_name: Beke
  full_name: Seefried, Beke
  last_name: Seefried
- first_name: Sebastian
  full_name: Siehl, Sebastian
  last_name: Siehl
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Argyris
  full_name: Stringaris, Argyris
  last_name: Stringaris
- first_name: Emanuel
  full_name: Schwarz, Emanuel
  last_name: Schwarz
- first_name: Nathalie
  full_name: Holz, Nathalie
  last_name: Holz
- first_name: Heike
  full_name: Tost, Heike
  last_name: Tost
- first_name: Andreas
  full_name: Meyer-Lindenberg, Andreas
  last_name: Meyer-Lindenberg
- first_name: Nina
  full_name: Christmann, Nina
  last_name: Christmann
- first_name: Karina
  full_name: Jansone, Karina
  last_name: Jansone
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Jamie
  full_name: Banks, Jamie
  last_name: Banks
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tatjana
  full_name: Schütz, Tatjana
  last_name: Schütz
- first_name: Ulrike Helene
  full_name: Taron, Ulrike Helene
  last_name: Taron
- first_name: Roland
  full_name: Eils, Roland
  last_name: Eils
- first_name: Jean Charles
  full_name: Roy, Jean Charles
  last_name: Roy
- first_name: Tristram A.
  full_name: Lett, Tristram A.
  last_name: Lett
- first_name: Hedi
  full_name: Kebir, Hedi
  last_name: Kebir
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Marcel
  full_name: Jentsch, Marcel
  last_name: Jentsch
- first_name: Emin
  full_name: Serin, Emin
  last_name: Serin
- first_name: Antoine
  full_name: Bernas, Antoine
  last_name: Bernas
- first_name: Nilakshi
  full_name: Vaidya, Nilakshi
  last_name: Vaidya
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Andreas
  full_name: Heinz, Andreas
  last_name: Heinz
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
citation:
  ama: Stahl B, Ogoh G, Schumann G, et al. Rethinking ethics in interdisciplinary
    and big data-driven neuroscience projects. <i>Nature Mental Health</i>. 2024;2(10).
    doi:<a href="https://doi.org/10.1038/s44220-024-00320-3">10.1038/s44220-024-00320-3</a>
  apa: Stahl, B., Ogoh, G., Schumann, G., Walter, H., Stahl, B., Young, A. H., … Walter,
    H. (2024). Rethinking ethics in interdisciplinary and big data-driven neuroscience
    projects. <i>Nature Mental Health</i>. Springer Nature. <a href="https://doi.org/10.1038/s44220-024-00320-3">https://doi.org/10.1038/s44220-024-00320-3</a>
  chicago: Stahl, Bernd, George Ogoh, Gunter Schumann, Henrik Walter, Bernd Stahl,
    Allan H. Young, Sylvane Desrivières, et al. “Rethinking Ethics in Interdisciplinary
    and Big Data-Driven Neuroscience Projects.” <i>Nature Mental Health</i>. Springer
    Nature, 2024. <a href="https://doi.org/10.1038/s44220-024-00320-3">https://doi.org/10.1038/s44220-024-00320-3</a>.
  ieee: B. Stahl <i>et al.</i>, “Rethinking ethics in interdisciplinary and big data-driven
    neuroscience projects,” <i>Nature Mental Health</i>, vol. 2, no. 10. Springer
    Nature, 2024.
  ista: Stahl B, Ogoh G, Schumann G, Walter H, Stahl B, Young AH, Desrivières S, Clinton
    N, Thompson P, Schwalber A, Liu J, Calhoun V, Chang X, Xia Y, Gong Y, Jia T, Renner
    P, Hese S, Giner A, Sanchez M, Alvarez E, Spanlang B, Pearmund C, Athanasiadis
    AP, Otten L, Pitel S, Petkoski S, Jirsa V, Schmitt K, Wilbertz J, Patraskaki M,
    Sommer P, Heilmann-Heimbach S, Mathey CM, Miller A, Claus I, Nöthen MM, Hoffmann
    P, Forstner AJ, Pastor A, Gallego J, Orosa FE, Viapiana GF, Slater M, Marr L,
    Novarino G, Marquand A, Böttger SJ, Tschorn M, Rapp M, Ask H, Kjelkenes R, Fernandez
    S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried B, Siehl S, Nees
    F, Neidhart M, Stringaris A, Schwarz E, Holz N, Tost H, Meyer-Lindenberg A, Christmann
    N, Jansone K, Banaschewski T, Banks J, Schepanski K, Schütz T, Taron UH, Eils
    R, Roy JC, Lett TA, Kebir H, Polemiti E, Hitchen E, Jentsch M, Serin E, Bernas
    A, Vaidya N, Twardziok S, Ralser M, Heinz A, Walter H. 2024. Rethinking ethics
    in interdisciplinary and big data-driven neuroscience projects. Nature Mental
    Health. 2(10), 1128–1130.
  mla: Stahl, Bernd, et al. “Rethinking Ethics in Interdisciplinary and Big Data-Driven
    Neuroscience Projects.” <i>Nature Mental Health</i>, vol. 2, no. 10, 1128–1130,
    Springer Nature, 2024, doi:<a href="https://doi.org/10.1038/s44220-024-00320-3">10.1038/s44220-024-00320-3</a>.
  short: B. Stahl, G. Ogoh, G. Schumann, H. Walter, B. Stahl, A.H. Young, S. Desrivières,
    N. Clinton, P. Thompson, A. Schwalber, J. Liu, V. Calhoun, X. Chang, Y. Xia, Y.
    Gong, T. Jia, P. Renner, S. Hese, A. Giner, M. Sanchez, E. Alvarez, B. Spanlang,
    C. Pearmund, A.P. Athanasiadis, L. Otten, S. Pitel, S. Petkoski, V. Jirsa, K.
    Schmitt, J. Wilbertz, M. Patraskaki, P. Sommer, S. Heilmann-Heimbach, C.M. Mathey,
    A. Miller, I. Claus, M.M. Nöthen, P. Hoffmann, A.J. Forstner, A. Pastor, J. Gallego,
    F.E. Orosa, G.F. Viapiana, M. Slater, L. Marr, G. Novarino, A. Marquand, S.J.
    Böttger, M. Tschorn, M. Rapp, H. Ask, R. Kjelkenes, S. Fernandez, D. Van Der Meer,
    L.T. Westlye, O.A. Andreassen, R. Aden, B. Seefried, S. Siehl, F. Nees, M. Neidhart,
    A. Stringaris, E. Schwarz, N. Holz, H. Tost, A. Meyer-Lindenberg, N. Christmann,
    K. Jansone, T. Banaschewski, J. Banks, K. Schepanski, T. Schütz, U.H. Taron, R.
    Eils, J.C. Roy, T.A. Lett, H. Kebir, E. Polemiti, E. Hitchen, M. Jentsch, E. Serin,
    A. Bernas, N. Vaidya, S. Twardziok, M. Ralser, A. Heinz, H. Walter, Nature Mental
    Health 2 (2024).
date_created: 2025-08-10T22:01:30Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2025-08-11T06:53:55Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-024-00320-3
fulldoi: https://doi.org/10.1038/s44220-024-00320-3
intvolume: '         2'
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
publication: Nature Mental Health
publication_identifier:
  eissn:
  - 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rethinking ethics in interdisciplinary and big data-driven neuroscience projects
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2024'
...
---
_id: '17235'
abstract:
- lang: eng
  text: We demonstrate ion irradiation by argon or gallium as a wafer-scale post-processing
    method to increase disorder in superconducting thin films. We study several widely
    used superconductors, both single-elements and compounds. We show that ion irradiation
    increases normal-state resistivity in all our films, which is expected to enable
    tuning their superconducting properties, for example, toward a higher kinetic
    inductance. We observe an increase in superconducting transition temperature for
    Al and MoSi and a decrease for Nb, NbN, and TiN. In MoSi, ion irradiation also
    improves the mixing of the two materials. We demonstrate the fabrication of an
    amorphous and homogeneous film of MoSi with uniform thickness, which is promising,
    for example, for superconducting nanowire single-photon detectors.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: We thank J. A. Sauls for useful discussions. For funding of our research
  project, we acknowledge the European Union’s Horizon 2020 Research and Innovation
  Program under Grant Agreement Nos. 862660/Quantum e-leaps, 899558/aCryComm, 766853/EFINED,
  and ECSEL programme 101007322/MatQu. This project has also received funding from
  Business Finland through Quantum Technologies Industrial (QuTI) Project No. 128291
  and from Research Council of Finland through Grant Nos. 310909, 350220 and Finnish
  Quantum Flagship project 359284. This work was performed as part of the Research
  Council of Finland Centres of Excellence program (Project Nos. 336817, 336819, 352934,
  and 352935). We also acknowledge funding from an internal strategic innovation project
  of VTT related to the development of quantum computing technologies. This research
  was supported by the Scientific Service Units of IST Austria through resources provided
  by Electron Microscopy Facility. J. Senior acknowledges funding from the European
  Union’s Horizon 2020 Research and Innovation Program under the Marie Skłodowska-Curie
  Grant Agreement No. 754411. A. Ronzani acknowledges funding from Research Council
  of Finland (Research Fellowship Project No. 356542).
article_number: '071101'
article_processing_charge: Yes
article_type: original
author:
- first_name: Katja
  full_name: Kohopää, Katja
  last_name: Kohopää
- first_name: Alberto
  full_name: Ronzani, Alberto
  last_name: Ronzani
- first_name: Robab Najafi
  full_name: Jabdaraghi, Robab Najafi
  last_name: Jabdaraghi
- first_name: Arijit
  full_name: Bera, Arijit
  last_name: Bera
- first_name: Mário
  full_name: Ribeiro, Mário
  last_name: Ribeiro
- first_name: Dibyendu
  full_name: Hazra, Dibyendu
  last_name: Hazra
- first_name: Jorden L
  full_name: Senior, Jorden L
  id: 5479D234-2D30-11EA-89CC-40953DDC885E
  last_name: Senior
  orcid: 0000-0002-0672-9295
- first_name: Mika
  full_name: Prunnila, Mika
  last_name: Prunnila
- first_name: Joonas
  full_name: Govenius, Joonas
  last_name: Govenius
- first_name: Janne S.
  full_name: Lehtinen, Janne S.
  last_name: Lehtinen
- first_name: Antti
  full_name: Kemppinen, Antti
  last_name: Kemppinen
citation:
  ama: Kohopää K, Ronzani A, Jabdaraghi RN, et al. Effect of ion irradiation on superconducting
    thin films. <i>APL Materials</i>. 2024;12(7). doi:<a href="https://doi.org/10.1063/5.0202851">10.1063/5.0202851</a>
  apa: Kohopää, K., Ronzani, A., Jabdaraghi, R. N., Bera, A., Ribeiro, M., Hazra,
    D., … Kemppinen, A. (2024). Effect of ion irradiation on superconducting thin
    films. <i>APL Materials</i>. AIP Publishing. <a href="https://doi.org/10.1063/5.0202851">https://doi.org/10.1063/5.0202851</a>
  chicago: Kohopää, Katja, Alberto Ronzani, Robab Najafi Jabdaraghi, Arijit Bera,
    Mário Ribeiro, Dibyendu Hazra, Jorden L Senior, et al. “Effect of Ion Irradiation
    on Superconducting Thin Films.” <i>APL Materials</i>. AIP Publishing, 2024. <a
    href="https://doi.org/10.1063/5.0202851">https://doi.org/10.1063/5.0202851</a>.
  ieee: K. Kohopää <i>et al.</i>, “Effect of ion irradiation on superconducting thin
    films,” <i>APL Materials</i>, vol. 12, no. 7. AIP Publishing, 2024.
  ista: Kohopää K, Ronzani A, Jabdaraghi RN, Bera A, Ribeiro M, Hazra D, Senior JL,
    Prunnila M, Govenius J, Lehtinen JS, Kemppinen A. 2024. Effect of ion irradiation
    on superconducting thin films. APL Materials. 12(7), 071101.
  mla: Kohopää, Katja, et al. “Effect of Ion Irradiation on Superconducting Thin Films.”
    <i>APL Materials</i>, vol. 12, no. 7, 071101, AIP Publishing, 2024, doi:<a href="https://doi.org/10.1063/5.0202851">10.1063/5.0202851</a>.
  short: K. Kohopää, A. Ronzani, R.N. Jabdaraghi, A. Bera, M. Ribeiro, D. Hazra, J.L.
    Senior, M. Prunnila, J. Govenius, J.S. Lehtinen, A. Kemppinen, APL Materials 12
    (2024).
date_created: 2024-07-14T22:01:11Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-09-08T08:10:58Z
day: '01'
ddc:
- '530'
department:
- _id: AnHi
doi: 10.1063/5.0202851
ec_funded: 1
external_id:
  isi:
  - '001260942200003'
file:
- access_level: open_access
  checksum: 32a5cdf0ea9c937f806b6039f3219917
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-16T06:30:30Z
  date_updated: 2024-07-16T06:30:30Z
  file_id: '17244'
  file_name: 2024_APLMaterial_Kohopaa.pdf
  file_size: 9408198
  relation: main_file
  success: 1
file_date_updated: 2024-07-16T06:30:30Z
fulldoi: https://doi.org/10.1063/5.0202851
has_accepted_license: '1'
intvolume: '        12'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: APL Materials
publication_identifier:
  eissn:
  - 2166-532X
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Effect of ion irradiation on superconducting thin films
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 12
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '17291'
abstract:
- lang: eng
  text: Bacterial cell walls are gigadalton-large cross-linked polymers with a wide
    range of motional amplitudes, including rather rigid as well as highly flexible
    parts. Magic-angle spinning NMR is a powerful method to obtain atomic-level information
    about intact cell walls. Here we investigate sensitivity and information content
    of different homonuclear 13Csingle bond13C and heteronuclear 1Hsingle bond15N,
    1Hsingle bond13C and 15Nsingle bond13C correlation experiments. We demonstrate
    that a CPMAS CryoProbe yields ca. 8-fold increased signal-to-noise over a room-temperature
    probe, or a ca. 3–4-fold larger per-mass sensitivity. The increased sensitivity
    allowed to obtain high-resolution spectra even on intact bacteria. Moreover, we
    compare resolution and sensitivity of 1H MAS experiments obtained at 100 kHz vs.
    55 kHz. Our study provides useful hints for choosing experiments to extract atomic-level
    details on cell-wall samples.
acknowledgement: "This research was supported by the French Agence Nationale de la
  Recherche (\r\nANR-16-CE11-0030-12, TransPepNMR). This work used the platforms of
  the Grenoble Instruct-ERIC center (ISBG; UAR 3518 CNRS-CEA-UGA-EMBL) within the
  Grenoble Partnership for Structural Biology (PSB), supported by FRISBI, France (ANR-10-INBS-0005-02\r\n)
  and GRAL, financed within the University Grenoble Alpes graduate school (Ecoles
  Universitaires de Recherche), CBH-EUR-GS (ANR-17-EURE-0003). Financial support from
  the IR INFRANALYTICS FR2054 for conducting the research and intramural funding by
  the Institute of Science and Technology Austria (ISTA) are gratefully acknowledged."
article_number: '107708'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Alicia
  full_name: Vallet, Alicia
  last_name: Vallet
- first_name: Isabel
  full_name: Ayala, Isabel
  last_name: Ayala
- first_name: Barbara
  full_name: Perrone, Barbara
  last_name: Perrone
- first_name: Alia
  full_name: Hassan, Alia
  last_name: Hassan
- first_name: Jean-Pierre
  full_name: Simorre, Jean-Pierre
  last_name: Simorre
- first_name: Catherine
  full_name: Bougault, Catherine
  last_name: Bougault
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
citation:
  ama: 'Vallet A, Ayala I, Perrone B, et al. MAS NMR experiments of corynebacterial
    cell walls: Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments.
    <i>Journal of Magnetic Resonance</i>. 2024;364. doi:<a href="https://doi.org/10.1016/j.jmr.2024.107708">10.1016/j.jmr.2024.107708</a>'
  apa: 'Vallet, A., Ayala, I., Perrone, B., Hassan, A., Simorre, J.-P., Bougault,
    C., &#38; Schanda, P. (2024). MAS NMR experiments of corynebacterial cell walls:
    Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments. <i>Journal
    of Magnetic Resonance</i>. Elsevier. <a href="https://doi.org/10.1016/j.jmr.2024.107708">https://doi.org/10.1016/j.jmr.2024.107708</a>'
  chicago: 'Vallet, Alicia, Isabel Ayala, Barbara Perrone, Alia Hassan, Jean-Pierre
    Simorre, Catherine Bougault, and Paul Schanda. “MAS NMR Experiments of Corynebacterial
    Cell Walls: Complementary 1H- and CPMAS CryoProbe-Enhanced 13C-Detected Experiments.”
    <i>Journal of Magnetic Resonance</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.jmr.2024.107708">https://doi.org/10.1016/j.jmr.2024.107708</a>.'
  ieee: 'A. Vallet <i>et al.</i>, “MAS NMR experiments of corynebacterial cell walls:
    Complementary 1H- and CPMAS CryoProbe-enhanced 13C-detected experiments,” <i>Journal
    of Magnetic Resonance</i>, vol. 364. Elsevier, 2024.'
  ista: 'Vallet A, Ayala I, Perrone B, Hassan A, Simorre J-P, Bougault C, Schanda
    P. 2024. MAS NMR experiments of corynebacterial cell walls: Complementary 1H-
    and CPMAS CryoProbe-enhanced 13C-detected experiments. Journal of Magnetic Resonance.
    364, 107708.'
  mla: 'Vallet, Alicia, et al. “MAS NMR Experiments of Corynebacterial Cell Walls:
    Complementary 1H- and CPMAS CryoProbe-Enhanced 13C-Detected Experiments.” <i>Journal
    of Magnetic Resonance</i>, vol. 364, 107708, Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.jmr.2024.107708">10.1016/j.jmr.2024.107708</a>.'
  short: A. Vallet, I. Ayala, B. Perrone, A. Hassan, J.-P. Simorre, C. Bougault, P.
    Schanda, Journal of Magnetic Resonance 364 (2024).
corr_author: '1'
date_created: 2024-07-22T07:44:10Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-09-09T12:01:41Z
day: '01'
ddc:
- '570'
department:
- _id: PaSc
doi: 10.1016/j.jmr.2024.107708
external_id:
  isi:
  - '001259302800001'
  pmid:
  - '38901173'
file:
- access_level: open_access
  checksum: 4b59f4f0c287ecbafd808da1212ced38
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-23T06:23:51Z
  date_updated: 2024-07-23T06:23:51Z
  file_id: '17316'
  file_name: 2024_JourMagneticResonance_Vallet.pdf
  file_size: 2236665
  relation: main_file
  success: 1
file_date_updated: 2024-07-23T06:23:51Z
fulldoi: https://doi.org/10.1016/j.jmr.2024.107708
has_accepted_license: '1'
intvolume: '       364'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Magnetic Resonance
publication_identifier:
  issn:
  - 1090-7807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '17042'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: 'MAS NMR experiments of corynebacterial cell walls: Complementary 1H- and CPMAS
  CryoProbe-enhanced 13C-detected experiments'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 364
year: '2024'
...
---
_id: '17344'
abstract:
- lang: eng
  text: 'This file contains the Mathematica notebook associated with the paper Effect
    of assortative mating and sexual selection on polygenic barriers to gene flow.
    It contains the numerical approximations, analyses, and simulations used in the
    study. '
acknowledged_ssus:
- _id: ScienComp
article_processing_charge: No
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Himani
  full_name: Sachdeva, Himani
  last_name: Sachdeva
citation:
  ama: Surendranadh P, Sachdeva H. Mathematica notebook for “Effect of assortative
    mating and sexual selection on polygenic barriers to gene flow.” 2024. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:17344">10.15479/AT:ISTA:17344</a>
  apa: Surendranadh, P., &#38; Sachdeva, H. (2024). Mathematica notebook for “Effect
    of assortative mating and sexual selection on polygenic barriers to gene flow.”
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:17344">https://doi.org/10.15479/AT:ISTA:17344</a>
  chicago: Surendranadh, Parvathy, and Himani Sachdeva. “Mathematica Notebook for
    ‘Effect of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene
    Flow.’” Institute of Science and Technology Austria, 2024. <a href="https://doi.org/10.15479/AT:ISTA:17344">https://doi.org/10.15479/AT:ISTA:17344</a>.
  ieee: P. Surendranadh and H. Sachdeva, “Mathematica notebook for ‘Effect of assortative
    mating and sexual selection on polygenic barriers to gene flow.’” Institute of
    Science and Technology Austria, 2024.
  ista: Surendranadh P, Sachdeva H. 2024. Mathematica notebook for ‘Effect of assortative
    mating and sexual selection on polygenic barriers to gene flow’, Institute of
    Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:17344">10.15479/AT:ISTA:17344</a>.
  mla: Surendranadh, Parvathy, and Himani Sachdeva. <i>Mathematica Notebook for “Effect
    of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene Flow.”</i>
    Institute of Science and Technology Austria, 2024, doi:<a href="https://doi.org/10.15479/AT:ISTA:17344">10.15479/AT:ISTA:17344</a>.
  short: P. Surendranadh, H. Sachdeva, (2024).
date_created: 2024-07-29T14:01:43Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-01-14T13:02:59Z
ddc:
- '576'
department:
- _id: GradSch
- _id: NiBa
doi: 10.15479/AT:ISTA:17344
file:
- access_level: open_access
  checksum: 75bdbc7ad7cc6afe4459bc4a8824a302
  content_type: application/octet-stream
  creator: psurendr
  date_created: 2024-07-29T13:51:11Z
  date_updated: 2024-07-29T13:51:11Z
  file_id: '17345'
  file_name: Submission.nb
  file_size: 726132
  relation: main_file
  success: 1
file_date_updated: 2024-07-29T13:51:11Z
fulldoi: https://doi.org/10.15479/AT:ISTA:17344
has_accepted_license: '1'
month: '07'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Mathematica notebook for 'Effect of assortative mating and sexual selection
  on polygenic barriers to gene flow'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_type: closed access
_id: '18167'
abstract:
- lang: eng
  text: 'Holdase chaperones are essential in the mitochondrial membrane-protein biogenesis
    as they stabilize preproteins and keep them in an import-competent state as they
    travel through the aqueous cytosol and intermembrane space. The small TIM chaperones
    of the mitochondrial intermembrane space function within a fine balance of client
    promiscuity and high affinity binding, while being also able to release their
    client proteins without significant energy barrier to the downstream insertases/translocases.
    The tendency of the preproteins to aggregate and the dynamic nature of the preprotein—chaperone
    complexes makes the preparation of these complexes challenging. Here we present
    two optimized methods for complex formation of highly hydrophobic precursor proteins
    and chaperones: a pull-down approach and an in-vitro translation strategy. In
    the former, attaching the client protein to an affinity resin keeps the individual
    client protein copies apart from each other and decreases the client self-aggregation
    probability, thereby favouring complex formation. In the latter approach, a purified
    chaperone, added to the cell-free protein synthesis, captures the nascent precursor
    protein. The choice of method will depend on the desired client-chaperone complex
    amount, or the need for specific labeling scheme.'
article_processing_charge: No
author:
- first_name: Undina
  full_name: Guillerm, Undina
  id: bb74f472-ae54-11eb-9835-bc9c22fb1183
  last_name: Guillerm
- first_name: Iva
  full_name: Sučec, Iva
  last_name: Sučec
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
citation:
  ama: 'Guillerm U, Sučec I, Schanda P. Generation of TIM chaperone substrate complexes.
    In: <i>Methods in Enzymology</i>. Vol 707. Elsevier; 2024:391-422. doi:<a href="https://doi.org/10.1016/bs.mie.2024.07.051">10.1016/bs.mie.2024.07.051</a>'
  apa: Guillerm, U., Sučec, I., &#38; Schanda, P. (2024). Generation of TIM chaperone
    substrate complexes. In <i>Methods in Enzymology</i> (Vol. 707, pp. 391–422).
    Elsevier. <a href="https://doi.org/10.1016/bs.mie.2024.07.051">https://doi.org/10.1016/bs.mie.2024.07.051</a>
  chicago: Guillerm, Undina, Iva Sučec, and Paul Schanda. “Generation of TIM Chaperone
    Substrate Complexes.” In <i>Methods in Enzymology</i>, 707:391–422. Elsevier,
    2024. <a href="https://doi.org/10.1016/bs.mie.2024.07.051">https://doi.org/10.1016/bs.mie.2024.07.051</a>.
  ieee: U. Guillerm, I. Sučec, and P. Schanda, “Generation of TIM chaperone substrate
    complexes,” in <i>Methods in Enzymology</i>, vol. 707, Elsevier, 2024, pp. 391–422.
  ista: 'Guillerm U, Sučec I, Schanda P. 2024.Generation of TIM chaperone substrate
    complexes. In: Methods in Enzymology. vol. 707, 391–422.'
  mla: Guillerm, Undina, et al. “Generation of TIM Chaperone Substrate Complexes.”
    <i>Methods in Enzymology</i>, vol. 707, Elsevier, 2024, pp. 391–422, doi:<a href="https://doi.org/10.1016/bs.mie.2024.07.051">10.1016/bs.mie.2024.07.051</a>.
  short: U. Guillerm, I. Sučec, P. Schanda, in:, Methods in Enzymology, Elsevier,
    2024, pp. 391–422.
corr_author: '1'
date_created: 2024-10-01T10:58:27Z
date_published: 2024-09-13T00:00:00Z
date_updated: 2025-10-22T06:40:54Z
day: '13'
department:
- _id: PaSc
doi: 10.1016/bs.mie.2024.07.051
external_id:
  pmid:
  - '39488384'
fulldoi: https://doi.org/10.1016/bs.mie.2024.07.051
intvolume: '       707'
language:
- iso: eng
month: '09'
oa_version: None
page: 391-422
pmid: 1
publication: Methods in Enzymology
publication_identifier:
  issn:
  - 0076-6879
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Generation of TIM chaperone substrate complexes
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 707
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '20701'
abstract:
- lang: eng
  text: "A Proof of Exponentiation (PoE) allows a prover to efficiently convince a
    verifier that \U0001D466 = \U0001D465\r\n\U0001D452\r\nin some group of unknown
    order. PoEs\r\nare the basis for practical constructions of Verifiable Delay Functions
    (VDFs), which, in turn, are important for various higher-level\r\nprotocols in
    distributed computing. In applications such as distributed consensus, many PoEs
    are generated regularly, motivating\r\nprotocols for secure aggregation of batches
    of statements into a\r\nfew statements to improve the efficiency for both parties.
    Rotem\r\n(TCC 2021) recently presented two such generic batch PoEs.\r\nIn this
    work, we introduce two batch PoEs that outperform\r\nboth proposals of Rotem and
    we evaluate their practicality. First,\r\nwe show that the two batch PoEs of Rotem
    can be combined to\r\nimprove the overall efficiency by at least a factor of two.
    Second, we\r\nrevisit the work of Bellare, Garay, and Rabin (EUROCRYPT 1998)\r\non
    batch verification of digital signatures and show that, under the\r\nlow order
    assumption, their bucket test can be securely adapted to\r\nthe setting of groups
    of unknown order. The resulting batch PoE\r\nquickly outperforms the state of
    the art in the expected number of\r\ngroup multiplications with the growing number
    of instances, and it\r\ndecreases the cost of batching by an order of magnitude
    already for\r\nhundreds of thousands of instances. Importantly, it is the first
    batch\r\nPoE that significantly decreases both the proof size and complexity\r\nof
    verification. Our experimental evaluations show that even a nonoptimized implementation
    achieves such improvements, which\r\nwould match the demands of real-life systems
    requiring large-scale\r\nPoE processing.\r\nFinally, even though our proof techniques
    are conceptually similar to Rotem, we give an improved analysis of the application
    of the\r\nlow order assumption towards secure batching of PoE instances,\r\nresulting
    in a tight reduction, which is important when setting the\r\nsecurity parameter
    in practice."
acknowledgement: Pavel Hubáček was supported by the Institute of Mathematics, Czech
  Academy of Sciences (RVO 67985840).
article_number: 2024/145
article_processing_charge: No
author:
- first_name: Charlotte
  full_name: Hoffmann, Charlotte
  id: 0f78d746-dc7d-11ea-9b2f-83f92091afe7
  last_name: Hoffmann
  orcid: 0000-0003-2027-5549
- first_name: Pavel
  full_name: Hubáček, Pavel
  last_name: Hubáček
- first_name: Svetlana
  full_name: Ivanova, Svetlana
  last_name: Ivanova
citation:
  ama: Hoffmann C, Hubáček P, Ivanova S. Practical batch proofs of exponentiation.
    <i>Cryptology ePrint Archive</i>.
  apa: Hoffmann, C., Hubáček, P., &#38; Ivanova, S. (n.d.). Practical batch proofs
    of exponentiation. <i>Cryptology ePrint Archive</i>. International Association
    for Cryptologic Research.
  chicago: Hoffmann, Charlotte, Pavel Hubáček, and Svetlana Ivanova. “Practical Batch
    Proofs of Exponentiation.” <i>Cryptology EPrint Archive</i>. International Association
    for Cryptologic Research, n.d.
  ieee: C. Hoffmann, P. Hubáček, and S. Ivanova, “Practical batch proofs of exponentiation,”
    <i>Cryptology ePrint Archive</i>. International Association for Cryptologic Research.
  ista: Hoffmann C, Hubáček P, Ivanova S. Practical batch proofs of exponentiation.
    Cryptology ePrint Archive, 2024/145.
  mla: Hoffmann, Charlotte, et al. “Practical Batch Proofs of Exponentiation.” <i>Cryptology
    EPrint Archive</i>, 2024/145, International Association for Cryptologic Research.
  short: C. Hoffmann, P. Hubáček, S. Ivanova, Cryptology EPrint Archive (n.d.).
corr_author: '1'
cryptoeprintid: 1
das_tickbox: '1'
date_created: 2025-11-27T10:13:38Z
date_published: 2024-02-02T00:00:00Z
date_updated: 2026-07-06T13:15:28Z
day: '02'
department:
- _id: KrPi
external_id:
  cryptoeprintid:
  - 2024/145
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2024/145
month: '02'
oa: 1
oa_version: Preprint
publication: Cryptology ePrint Archive
publication_status: draft
publisher: International Association for Cryptologic Research
related_material:
  record:
  - id: '20920'
    relation: dissertation_contains
    status: public
  - id: '20556'
    relation: dissertation_contains
    status: public
status: public
title: Practical batch proofs of exponentiation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '19425'
abstract:
- lang: eng
  text: "We demonstrate that periodically driven quantum rotors provide a promising
    and broadly applicable platform to implement multi-gap topological phases, where
    groups of bands can acquire topological invariants due to non-Abelian braiding
    of band degeneracies. By adiabatically varying the periodic kicks to the rotor
    we find nodal-line braiding, which causes sign flips of topological charges of
    band nodes and can prevent them from annihilating, indicated by non-zero values
    of the %non-Abelian patch Euler class. In particular, we report\r\non the emergence
    of an anomalous Dirac string phase arising in the strongly driven regime, a truly
    out-of-equilibrium phase of the quantum rotor. This phase emanates from braiding
    processes involving all (quasienergy) gaps and manifests itself with edge states
    at zero angular momentum. Our results reveal direct applications in state-of-the-art
    experiments of quantum rotors, such as linear molecules driven by periodic far-off-resonant
    laser pulses or artificial\r\nquantum rotors in optical lattices, whose extensive
    versatility offers precise modification and observation of novel non-Abelian topological
    properties. "
acknowledgement: "We thank G. M. Koutentakis, S. Wimberger, J. G. E. Harris, T. Enss
  and A. Ghazaryan for fruitful discussions. M.L. acknowledges support by the European
  Research Council (ERC) Starting Grant No. 801770 (ANGULON). R.-J. S. acknowledges
  funding from a EPSRC ERC underwrite grant EP/X025829/1, a EPSRC New Investigator
  Award grant EP/W00187X/1, as well as Trinity College, Cambridge. F.N.U. acknowledges
  support from the Marie ¨Sk lodowska-Curie programme of the European Commission [Grant
  No. 893915], Simons Investigator Award\r\n[Grant No. 511029] and Trinity College
  Cambridge."
article_number: '2408.16848'
article_processing_charge: No
arxiv: 1
author:
- first_name: Volker
  full_name: Karle, Volker
  id: D7C012AE-D7ED-11E9-95E8-1EC5E5697425
  last_name: Karle
  orcid: 0000-0002-6963-0129
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Adrien
  full_name: Bouhon, Adrien
  last_name: Bouhon
- first_name: Robert-Jan
  full_name: Slager, Robert-Jan
  last_name: Slager
- first_name: F. Nur
  full_name: Ünal, F. Nur
  last_name: Ünal
citation:
  ama: Karle V, Lemeshko M, Bouhon A, Slager R-J, Ünal FN. Anomalous multi-gap topological
    phases in periodically driven quantum  rotors. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2408.16848">10.48550/arXiv.2408.16848</a>
  apa: Karle, V., Lemeshko, M., Bouhon, A., Slager, R.-J., &#38; Ünal, F. N. (n.d.).
    Anomalous multi-gap topological phases in periodically driven quantum  rotors.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2408.16848">https://doi.org/10.48550/arXiv.2408.16848</a>
  chicago: Karle, Volker, Mikhail Lemeshko, Adrien Bouhon, Robert-Jan Slager, and
    F. Nur Ünal. “Anomalous Multi-Gap Topological Phases in Periodically Driven Quantum 
    Rotors.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2408.16848">https://doi.org/10.48550/arXiv.2408.16848</a>.
  ieee: V. Karle, M. Lemeshko, A. Bouhon, R.-J. Slager, and F. N. Ünal, “Anomalous
    multi-gap topological phases in periodically driven quantum  rotors,” <i>arXiv</i>.
    .
  ista: Karle V, Lemeshko M, Bouhon A, Slager R-J, Ünal FN. Anomalous multi-gap topological
    phases in periodically driven quantum  rotors. arXiv, 2408.16848.
  mla: Karle, Volker, et al. “Anomalous Multi-Gap Topological Phases in Periodically
    Driven Quantum  Rotors.” <i>ArXiv</i>, 2408.16848, doi:<a href="https://doi.org/10.48550/arXiv.2408.16848">10.48550/arXiv.2408.16848</a>.
  short: V. Karle, M. Lemeshko, A. Bouhon, R.-J. Slager, F.N. Ünal, ArXiv (n.d.).
date_created: 2025-03-20T07:48:23Z
date_published: 2024-08-29T00:00:00Z
date_updated: 2026-07-29T08:59:31Z
day: '29'
department:
- _id: MiLe
doi: 10.48550/arXiv.2408.16848
ec_funded: 1
external_id:
  arxiv:
  - '2408.16848'
fulldoi: https://doi.org/10.48550/arXiv.2408.16848
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2408.16848
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '19393'
    relation: dissertation_contains
    status: public
  - id: '21009'
    relation: later_version
    status: public
status: public
title: Anomalous multi-gap topological phases in periodically driven quantum  rotors
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19051'
abstract:
- lang: eng
  text: This paper corrects an error in an earlier work of the author.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Timothy D
  full_name: Browning, Timothy D
  id: 35827D50-F248-11E8-B48F-1D18A9856A87
  last_name: Browning
  orcid: 0000-0002-8314-0177
citation:
  ama: Browning TD. The polynomial sieve and equal sums of like polynomials. <i>International
    Mathematics Research Notices</i>. 2024;2024(13):10165-10168. doi:<a href="https://doi.org/10.1093/imrn/rnae066">10.1093/imrn/rnae066</a>
  apa: Browning, T. D. (2024). The polynomial sieve and equal sums of like polynomials.
    <i>International Mathematics Research Notices</i>. Oxford University Press. <a
    href="https://doi.org/10.1093/imrn/rnae066">https://doi.org/10.1093/imrn/rnae066</a>
  chicago: Browning, Timothy D. “The Polynomial Sieve and Equal Sums of like Polynomials.”
    <i>International Mathematics Research Notices</i>. Oxford University Press, 2024.
    <a href="https://doi.org/10.1093/imrn/rnae066">https://doi.org/10.1093/imrn/rnae066</a>.
  ieee: T. D. Browning, “The polynomial sieve and equal sums of like polynomials,”
    <i>International Mathematics Research Notices</i>, vol. 2024, no. 13. Oxford University
    Press, pp. 10165–10168, 2024.
  ista: Browning TD. 2024. The polynomial sieve and equal sums of like polynomials.
    International Mathematics Research Notices. 2024(13), 10165–10168.
  mla: Browning, Timothy D. “The Polynomial Sieve and Equal Sums of like Polynomials.”
    <i>International Mathematics Research Notices</i>, vol. 2024, no. 13, Oxford University
    Press, 2024, pp. 10165–68, doi:<a href="https://doi.org/10.1093/imrn/rnae066">10.1093/imrn/rnae066</a>.
  short: T.D. Browning, International Mathematics Research Notices 2024 (2024) 10165–10168.
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title: The polynomial sieve and equal sums of like polynomials
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