---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '18449'
abstract:
- lang: eng
  text: "Research involving human subjects or identifiable human material and data
    must be assessed by an ethics committee. The Karl Landsteiner University of Health
    Sciences has established a Commission on Ethics and Scientific Integrity to evaluate
    medical research conducted by its faculty and students and at its affiliated hospitals.\r\nAll
    projects submitted to the Commission on Ethics and Scientific Integrity between
    2018 and 2023 were analyzed regarding their major characteristics, the duration
    of the evaluation process, and votes issued.\r\nA total of 520 applications were
    electronically submitted during the observation period. Most of the studies were
    retrospective data analyses in the field of oncology, psychology and surgery.
    Most studies included less than 100 volunteers. Of the applications 50% received
    a final vote within 5 months, during which several revision rounds took place.
    Overall, about 77% of votes issued during the observation period were positive
    and 2% were rejections. In 11% files were closed due to withdrawal. In 11% final
    votes were pending at the end of the observation period due to requests for revisions.\r\nOur
    results emphasize the importance of institutional ethics committees using the
    example of the Commission on Ethics and Scientific Integrity at the Karl Landsteiner
    University. Such committees fill a gap in evaluating research not covered by Austrian
    legal regulations. Continuous development of standards, operating procedures,
    and national and international collaborations are required to assess and minimize
    risks to trial subjects and to provide a safe and productive environment for research
    in human medicine and related fields."
acknowledgement: Open access funding provided by Karl Landsteiner University.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Sophie
  full_name: Schober, Sophie
  id: 80b0a0ef-4b9f-11ec-b119-8d9d94c4a1d8
  last_name: Schober
- first_name: Sascha
  full_name: Klee, Sascha
  last_name: Klee
- first_name: Franz
  full_name: Trautinger, Franz
  last_name: Trautinger
citation:
  ama: 'Schober S, Klee S, Trautinger F. The role of institutional ethics committees
    in Austria: Report of the Commission on Ethics and Scientific Integrity of the
    Karl Landsteiner University of Health Sciences 2018–2023. <i>Wiener Klinische
    Wochenschrift</i>. 2025;137:432-437. doi:<a href="https://doi.org/10.1007/s00508-024-02462-x">10.1007/s00508-024-02462-x</a>'
  apa: 'Schober, S., Klee, S., &#38; Trautinger, F. (2025). The role of institutional
    ethics committees in Austria: Report of the Commission on Ethics and Scientific
    Integrity of the Karl Landsteiner University of Health Sciences 2018–2023. <i>Wiener
    Klinische Wochenschrift</i>. Springer Nature. <a href="https://doi.org/10.1007/s00508-024-02462-x">https://doi.org/10.1007/s00508-024-02462-x</a>'
  chicago: 'Schober, Sophie, Sascha Klee, and Franz Trautinger. “The Role of Institutional
    Ethics Committees in Austria: Report of the Commission on Ethics and Scientific
    Integrity of the Karl Landsteiner University of Health Sciences 2018–2023.” <i>Wiener
    Klinische Wochenschrift</i>. Springer Nature, 2025. <a href="https://doi.org/10.1007/s00508-024-02462-x">https://doi.org/10.1007/s00508-024-02462-x</a>.'
  ieee: 'S. Schober, S. Klee, and F. Trautinger, “The role of institutional ethics
    committees in Austria: Report of the Commission on Ethics and Scientific Integrity
    of the Karl Landsteiner University of Health Sciences 2018–2023,” <i>Wiener Klinische
    Wochenschrift</i>, vol. 137. Springer Nature, pp. 432–437, 2025.'
  ista: 'Schober S, Klee S, Trautinger F. 2025. The role of institutional ethics committees
    in Austria: Report of the Commission on Ethics and Scientific Integrity of the
    Karl Landsteiner University of Health Sciences 2018–2023. Wiener Klinische Wochenschrift.
    137, 432–437.'
  mla: 'Schober, Sophie, et al. “The Role of Institutional Ethics Committees in Austria:
    Report of the Commission on Ethics and Scientific Integrity of the Karl Landsteiner
    University of Health Sciences 2018–2023.” <i>Wiener Klinische Wochenschrift</i>,
    vol. 137, Springer Nature, 2025, pp. 432–37, doi:<a href="https://doi.org/10.1007/s00508-024-02462-x">10.1007/s00508-024-02462-x</a>.'
  short: S. Schober, S. Klee, F. Trautinger, Wiener Klinische Wochenschrift 137 (2025)
    432–437.
corr_author: '1'
date_created: 2024-10-20T22:02:07Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2025-12-30T06:55:59Z
day: '01'
ddc:
- '570'
department:
- _id: PreCl
doi: 10.1007/s00508-024-02462-x
external_id:
  isi:
  - '001329812000001'
file:
- access_level: open_access
  checksum: 321be8a584117feaea9f3feaa28caabd
  content_type: application/pdf
  creator: dernst
  date_created: 2025-12-30T06:54:03Z
  date_updated: 2025-12-30T06:54:03Z
  file_id: '20880'
  file_name: 2025_WrKlinischeWochenschrift_Schober.pdf
  file_size: 580791
  relation: main_file
  success: 1
file_date_updated: 2025-12-30T06:54:03Z
has_accepted_license: '1'
intvolume: '       137'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 432-437
publication: Wiener Klinische Wochenschrift
publication_identifier:
  eissn:
  - 1613-7671
  issn:
  - 0043-5325
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The role of institutional ethics committees in Austria: Report of the Commission
  on Ethics and Scientific Integrity of the Karl Landsteiner University of Health
  Sciences 2018–2023'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 137
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19076'
abstract:
- lang: eng
  text: For accurate perception and motor control, an animal must distinguish between
    sensory experiences elicited by external stimuli and those elicited by its own
    actions. The diversity of behaviors and their complex influences on the senses
    make this distinction challenging. Here, we uncover an action–cue hub that coordinates
    motor commands with visual processing in the brain’s first visual relay. We show
    that the ventral lateral geniculate nucleus (vLGN) acts as a corollary discharge
    center, integrating visual translational optic flow signals with motor copies
    from saccades, locomotion and pupil dynamics. The vLGN relays these signals to
    correct action-specific visual distortions and to refine perception, as shown
    for the superior colliculus and in a depth-estimation task. Simultaneously, brain-wide
    vLGN projections drive corrective actions necessary for accurate visuomotor control.
    Our results reveal an extended corollary discharge architecture that refines early
    visual transformations and coordinates actions via a distributed hub-and-spoke
    network to enable visual perception during action.
acknowledged_ssus:
- _id: ScienComp
- _id: PreCl
- _id: LifeSc
- _id: Bio
acknowledgement: We thank Y. Ben-Simon for generously making viral vectors for retrograde
  tracing available, as well as J. Watson and F. Marr for reagents. We also thank
  R. Shigemoto, W. Młynarski and members of the Neuroethology group for their comments
  on the manuscript and L. Burnett for her schematic drawings. This research was supported
  by the Scientific Service Units of ISTA through resources provided by Scientific
  Computing, the Preclinical Facility, the Lab Support Facility and the Imaging and
  Optics Facility, in particular F. Lange, M. Schunn and T. Asenov. This work was
  supported by European Research Council Starting Grant no. 756502 (M.J.) and European
  Research Council Consolidator Grant no. 101086580 (M.J.); and EMBO ALTF grant no.
  1098-2017 (A.S.) and Human Frontiers Science Program grant no. LT000256/2018-L (A.S.).
  Open access funding provided by Institute of Science and Technology (IST Austria).
article_number: '7278'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Tomas A
  full_name: Vega Zuniga, Tomas A
  id: 2E7C4E78-F248-11E8-B48F-1D18A9856A87
  last_name: Vega Zuniga
- first_name: Anton L
  full_name: Sumser, Anton L
  id: 3320A096-F248-11E8-B48F-1D18A9856A87
  last_name: Sumser
  orcid: 0000-0002-4792-1881
- first_name: Olga
  full_name: Symonova, Olga
  id: 3C0C7BC6-F248-11E8-B48F-1D18A9856A87
  last_name: Symonova
  orcid: 0000-0003-2012-9947
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: Florian
  full_name: Schmidt, Florian
  id: A2EF226A-AF19-11E9-924C-0525E6697425
  last_name: Schmidt
- first_name: Maximilian A
  full_name: Jösch, Maximilian A
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
citation:
  ama: Vega Zuniga TA, Sumser AL, Symonova O, Koppensteiner P, Schmidt F, Jösch MA.
    A thalamic hub-and-spoke network enables visual perception during action by coordinating
    visuomotor dynamics. <i>Nature Neuroscience</i>. 2025;28. doi:<a href="https://doi.org/10.1038/s41593-025-01874-w">10.1038/s41593-025-01874-w</a>
  apa: Vega Zuniga, T. A., Sumser, A. L., Symonova, O., Koppensteiner, P., Schmidt,
    F., &#38; Jösch, M. A. (2025). A thalamic hub-and-spoke network enables visual
    perception during action by coordinating visuomotor dynamics. <i>Nature Neuroscience</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41593-025-01874-w">https://doi.org/10.1038/s41593-025-01874-w</a>
  chicago: Vega Zuniga, Tomas A, Anton L Sumser, Olga Symonova, Peter Koppensteiner,
    Florian Schmidt, and Maximilian A Jösch. “A Thalamic Hub-and-Spoke Network Enables
    Visual Perception during Action by Coordinating Visuomotor Dynamics.” <i>Nature
    Neuroscience</i>. Springer Nature, 2025. <a href="https://doi.org/10.1038/s41593-025-01874-w">https://doi.org/10.1038/s41593-025-01874-w</a>.
  ieee: T. A. Vega Zuniga, A. L. Sumser, O. Symonova, P. Koppensteiner, F. Schmidt,
    and M. A. Jösch, “A thalamic hub-and-spoke network enables visual perception during
    action by coordinating visuomotor dynamics,” <i>Nature Neuroscience</i>, vol.
    28. Springer Nature, 2025.
  ista: Vega Zuniga TA, Sumser AL, Symonova O, Koppensteiner P, Schmidt F, Jösch MA.
    2025. A thalamic hub-and-spoke network enables visual perception during action
    by coordinating visuomotor dynamics. Nature Neuroscience. 28, 7278.
  mla: Vega Zuniga, Tomas A., et al. “A Thalamic Hub-and-Spoke Network Enables Visual
    Perception during Action by Coordinating Visuomotor Dynamics.” <i>Nature Neuroscience</i>,
    vol. 28, 7278, Springer Nature, 2025, doi:<a href="https://doi.org/10.1038/s41593-025-01874-w">10.1038/s41593-025-01874-w</a>.
  short: T.A. Vega Zuniga, A.L. Sumser, O. Symonova, P. Koppensteiner, F. Schmidt,
    M.A. Jösch, Nature Neuroscience 28 (2025).
corr_author: '1'
date_created: 2025-02-23T23:01:58Z
date_published: 2025-03-01T00:00:00Z
date_updated: 2025-09-30T10:40:49Z
day: '01'
department:
- _id: MaJö
- _id: PreCl
doi: 10.1038/s41593-025-01874-w
ec_funded: 1
external_id:
  isi:
  - '001416866800001'
  pmid:
  - '39930095'
has_accepted_license: '1'
intvolume: '        28'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41593-025-01874-w
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2634E9D2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '756502'
  name: Circuits of Visual Attention
- _id: bdaf81a8-d553-11ed-ba76-c95961984540
  grant_number: '101086580'
  name: 'Action Selection in the Midbrain: Neuromodulation of Visuomotor Senses'
- _id: 264FEA02-B435-11E9-9278-68D0E5697425
  grant_number: ALTF 1098-2017
  name: Connecting sensory with motor processing in the superior colliculus
- _id: 266D407A-B435-11E9-9278-68D0E5697425
  grant_number: LT000256
  name: Neuronal networks of salience and spatial detection in the murine superior
    colliculus
publication: Nature Neuroscience
publication_identifier:
  eissn:
  - 1546-1726
  issn:
  - 1097-6256
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA Website
    relation: press_release
    url: https://ista.ac.at/en/news/high-tech-video-optimization-in-our-brain/
  record:
  - id: '18579'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: A thalamic hub-and-spoke network enables visual perception during action by
  coordinating visuomotor dynamics
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 28
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20858'
abstract:
- lang: eng
  text: Targeted antigen delivery to immune cells, particularly dendritic cells, has
    emerged as a promising strategy to enhance therapeutic efficacy of vaccines, while
    minimizing adverse effects associated with conventional immunization. In this
    study, we use our previously described small glycomimetic molecule that is selectively
    recognized by the Langerhans cell (LC)-specific surface receptor Langerin and
    demonstrate specific delivery of protein antigens to these specialized dendritic
    cells. Our results show that Langerin-mediated antigen delivery significantly
    enhances the immune response in vivo, resulting in increased expansion and activation
    of antigen-specific T cells, compared to immunization with unmodified antigen.
    We demonstrate the feasibility of our LC-targeted platform for immune cell-specific
    immunization with protein antigen and underscore the potential of LCs as an access
    point for next-generation vaccines and immunotherapies.
acknowledgement: This project was generously supported by Seedfinancing (grant no.
  P2282679) of the Austrian Bundesministerium für Digitalisierung und Wirtschaftsstandort
  and the Bundesministerium für Klimaschutz, Umwelt, Energie, Mobilität, Innovation,
  und Technologie, handled by the Austrian Wirtschaftsservice (aws), as well as by
  Life Science Call 2022 (grant no. FO999896442) of the Austrian Research Promotion
  Agency (FFG). We thank Mag. Michael Schunn from the PCF of the Institute of Science
  and Technology Austria for his continuous technical support.
article_processing_charge: No
article_type: original
author:
- first_name: Ramona
  full_name: Rica, Ramona
  last_name: Rica
- first_name: Klara
  full_name: Klein, Klara
  last_name: Klein
- first_name: Litty
  full_name: Johnson, Litty
  last_name: Johnson
- first_name: Gabriele
  full_name: Carta, Gabriele
  last_name: Carta
- first_name: Mirza
  full_name: Sarcevic, Mirza
  last_name: Sarcevic
- first_name: Freyja
  full_name: Langer, Freyja
  id: 3C1BE782-F248-11E8-B48F-1D18A9856A87
  last_name: Langer
- first_name: Christoph
  full_name: Rademacher, Christoph
  last_name: Rademacher
- first_name: Robert
  full_name: Wawrzinek, Robert
  last_name: Wawrzinek
- first_name: Federica
  full_name: Quattrone, Federica
  last_name: Quattrone
- first_name: Florian
  full_name: Sparber, Florian
  last_name: Sparber
citation:
  ama: Rica R, Klein K, Johnson L, et al. Langerhans cell-targeted protein delivery
    enhances antigen-specific cellular immune response. <i>Molecular Therapy</i>.
    doi:<a href="https://doi.org/10.1016/j.ymthe.2025.10.008">10.1016/j.ymthe.2025.10.008</a>
  apa: Rica, R., Klein, K., Johnson, L., Carta, G., Sarcevic, M., Langer, F., … Sparber,
    F. (n.d.). Langerhans cell-targeted protein delivery enhances antigen-specific
    cellular immune response. <i>Molecular Therapy</i>. Elsevier. <a href="https://doi.org/10.1016/j.ymthe.2025.10.008">https://doi.org/10.1016/j.ymthe.2025.10.008</a>
  chicago: Rica, Ramona, Klara Klein, Litty Johnson, Gabriele Carta, Mirza Sarcevic,
    Freyja Langer, Christoph Rademacher, Robert Wawrzinek, Federica Quattrone, and
    Florian Sparber. “Langerhans Cell-Targeted Protein Delivery Enhances Antigen-Specific
    Cellular Immune Response.” <i>Molecular Therapy</i>. Elsevier, n.d. <a href="https://doi.org/10.1016/j.ymthe.2025.10.008">https://doi.org/10.1016/j.ymthe.2025.10.008</a>.
  ieee: R. Rica <i>et al.</i>, “Langerhans cell-targeted protein delivery enhances
    antigen-specific cellular immune response,” <i>Molecular Therapy</i>. Elsevier.
  ista: Rica R, Klein K, Johnson L, Carta G, Sarcevic M, Langer F, Rademacher C, Wawrzinek
    R, Quattrone F, Sparber F. Langerhans cell-targeted protein delivery enhances
    antigen-specific cellular immune response. Molecular Therapy.
  mla: Rica, Ramona, et al. “Langerhans Cell-Targeted Protein Delivery Enhances Antigen-Specific
    Cellular Immune Response.” <i>Molecular Therapy</i>, Elsevier, doi:<a href="https://doi.org/10.1016/j.ymthe.2025.10.008">10.1016/j.ymthe.2025.10.008</a>.
  short: R. Rica, K. Klein, L. Johnson, G. Carta, M. Sarcevic, F. Langer, C. Rademacher,
    R. Wawrzinek, F. Quattrone, F. Sparber, Molecular Therapy (n.d.).
date_created: 2025-12-28T23:01:26Z
date_published: 2025-10-04T00:00:00Z
date_updated: 2025-12-29T09:55:05Z
day: '04'
department:
- _id: PreCl
doi: 10.1016/j.ymthe.2025.10.008
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2025.05.05.652195
month: '10'
oa: 1
oa_version: Preprint
publication: Molecular Therapy
publication_identifier:
  eissn:
  - 1525-0024
  issn:
  - 1525-0016
publication_status: inpress
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Langerhans cell-targeted protein delivery enhances antigen-specific cellular
  immune response
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_type: closed access
_id: '18310'
article_processing_charge: No
article_type: original
author:
- first_name: Maria
  full_name: Kitsara, Maria
  last_name: Kitsara
- first_name: Merima
  full_name: Smajlhodžić-Deljo, Merima
  last_name: Smajlhodžić-Deljo
- first_name: Lejla
  full_name: Gurbeta Pokvic, Lejla
  last_name: Gurbeta Pokvic
- first_name: Bettina
  full_name: Bert, Bettina
  last_name: Bert
- first_name: Nataliia
  full_name: Bubalo, Nataliia
  last_name: Bubalo
- first_name: Sevilay
  full_name: Erden, Sevilay
  last_name: Erden
- first_name: Nuno Henrique
  full_name: Franco, Nuno Henrique
  last_name: Franco
- first_name: Giuseppe
  full_name: Chirico, Giuseppe
  last_name: Chirico
- first_name: Jonathan
  full_name: Gómez Raja, Jonathan
  last_name: Gómez Raja
- first_name: Fernando
  full_name: Gonzalez-Uarquin, Fernando
  last_name: Gonzalez-Uarquin
- first_name: Annemarie
  full_name: Lang, Annemarie
  last_name: Lang
- first_name: Nicole
  full_name: Linklater, Nicole
  last_name: Linklater
- first_name: Sandra
  full_name: Mojsova, Sandra
  last_name: Mojsova
- first_name: I. Anna S.
  full_name: Olsson, I. Anna S.
  last_name: Olsson
- first_name: Ioanna
  full_name: Sandvig, Ioanna
  last_name: Sandvig
- first_name: Alexandra
  full_name: Schaffert, Alexandra
  last_name: Schaffert
- first_name: Marthe
  full_name: Schmit, Marthe
  last_name: Schmit
- first_name: Sophie
  full_name: Schober, Sophie
  id: 80b0a0ef-4b9f-11ec-b119-8d9d94c4a1d8
  last_name: Schober
- first_name: Bogdan
  full_name: Sevastre, Bogdan
  last_name: Sevastre
- first_name: Doris
  full_name: Wilflingseder, Doris
  last_name: Wilflingseder
- first_name: Arti
  full_name: Ahluwalia, Arti
  last_name: Ahluwalia
- first_name: Winfried
  full_name: Neuhaus, Winfried
  last_name: Neuhaus
citation:
  ama: Kitsara M, Smajlhodžić-Deljo M, Gurbeta Pokvic L, et al. Introducing the COST
    action ‘Improving the Quality of Biomedical Science with 3Rs Concepts’ (IMPROVE).
    <i>Alternatives to Laboratory Animals</i>. 2024;52(6):326-333. doi:<a href="https://doi.org/10.1177/02611929241286024">10.1177/02611929241286024</a>
  apa: Kitsara, M., Smajlhodžić-Deljo, M., Gurbeta Pokvic, L., Bert, B., Bubalo, N.,
    Erden, S., … Neuhaus, W. (2024). Introducing the COST action ‘Improving the Quality
    of Biomedical Science with 3Rs Concepts’ (IMPROVE). <i>Alternatives to Laboratory
    Animals</i>. SAGE Publications. <a href="https://doi.org/10.1177/02611929241286024">https://doi.org/10.1177/02611929241286024</a>
  chicago: Kitsara, Maria, Merima Smajlhodžić-Deljo, Lejla Gurbeta Pokvic, Bettina
    Bert, Nataliia Bubalo, Sevilay Erden, Nuno Henrique Franco, et al. “Introducing
    the COST Action ‘Improving the Quality of Biomedical Science with 3Rs Concepts’
    (IMPROVE).” <i>Alternatives to Laboratory Animals</i>. SAGE Publications, 2024.
    <a href="https://doi.org/10.1177/02611929241286024">https://doi.org/10.1177/02611929241286024</a>.
  ieee: M. Kitsara <i>et al.</i>, “Introducing the COST action ‘Improving the Quality
    of Biomedical Science with 3Rs Concepts’ (IMPROVE),” <i>Alternatives to Laboratory
    Animals</i>, vol. 52, no. 6. SAGE Publications, pp. 326–333, 2024.
  ista: Kitsara M, Smajlhodžić-Deljo M, Gurbeta Pokvic L, Bert B, Bubalo N, Erden
    S, Franco NH, Chirico G, Gómez Raja J, Gonzalez-Uarquin F, Lang A, Linklater N,
    Mojsova S, Olsson IAS, Sandvig I, Schaffert A, Schmit M, Schober S, Sevastre B,
    Wilflingseder D, Ahluwalia A, Neuhaus W. 2024. Introducing the COST action ‘Improving
    the Quality of Biomedical Science with 3Rs Concepts’ (IMPROVE). Alternatives to
    Laboratory Animals. 52(6), 326–333.
  mla: Kitsara, Maria, et al. “Introducing the COST Action ‘Improving the Quality
    of Biomedical Science with 3Rs Concepts’ (IMPROVE).” <i>Alternatives to Laboratory
    Animals</i>, vol. 52, no. 6, SAGE Publications, 2024, pp. 326–33, doi:<a href="https://doi.org/10.1177/02611929241286024">10.1177/02611929241286024</a>.
  short: M. Kitsara, M. Smajlhodžić-Deljo, L. Gurbeta Pokvic, B. Bert, N. Bubalo,
    S. Erden, N.H. Franco, G. Chirico, J. Gómez Raja, F. Gonzalez-Uarquin, A. Lang,
    N. Linklater, S. Mojsova, I.A.S. Olsson, I. Sandvig, A. Schaffert, M. Schmit,
    S. Schober, B. Sevastre, D. Wilflingseder, A. Ahluwalia, W. Neuhaus, Alternatives
    to Laboratory Animals 52 (2024) 326–333.
date_created: 2024-10-13T22:01:51Z
date_published: 2024-11-01T00:00:00Z
date_updated: 2025-09-08T09:56:39Z
day: '01'
department:
- _id: PreCl
doi: 10.1177/02611929241286024
external_id:
  isi:
  - '001348633700007'
  pmid:
  - '39333027'
intvolume: '        52'
isi: 1
issue: '6'
language:
- iso: eng
month: '11'
oa_version: None
page: 326-333
pmid: 1
publication: Alternatives to Laboratory Animals
publication_identifier:
  eissn:
  - 2632-3559
  issn:
  - 0261-1929
publication_status: published
publisher: SAGE Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Introducing the COST action ‘Improving the Quality of Biomedical Science with
  3Rs Concepts’ (IMPROVE)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 52
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18587'
abstract:
- lang: eng
  text: Many scientific breakthroughs have depended on animal research, yet the ethical
    concerns surrounding the use of animals in experimentation have long prompted
    discussions about humane treatment and responsible scientific practice. First
    articulated by Russell and Burch, the 3Rs Principles of Replacement, Reduction,
    and Refinement have gained widespread recognition as basic guidelines for animal
    research. Over time, the 3Rs have transcended the research community, influencing
    policy decisions, animal welfare advocacy and public perception of animal experimentation.
    Despite their broad acceptance, interpretations of the 3Rs vary substantially,
    shaping statutory frameworks at various levels, with both technical and practical
    impacts.
acknowledgement: This publication is based upon work from the Ethics Crossover Group
  within the COST Action IMPROVE (“3Rs concepts to improve the quality of biomedical
  science”), CA21139, supported by COST (European Cooperation in Science and Technology).
  We acknowledge the input and advice from Dr. Susanna Louhimies.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Jan
  full_name: Lauwereyns, Jan
  last_name: Lauwereyns
- first_name: Jeffrey
  full_name: Bajramovic, Jeffrey
  last_name: Bajramovic
- first_name: Bettina
  full_name: Bert, Bettina
  last_name: Bert
- first_name: Samuel
  full_name: Camenzind, Samuel
  last_name: Camenzind
- first_name: Joery
  full_name: De Kock, Joery
  last_name: De Kock
- first_name: Alisa
  full_name: Elezović, Alisa
  last_name: Elezović
- first_name: Sevilay
  full_name: Erden, Sevilay
  last_name: Erden
- first_name: Fernando
  full_name: Gonzalez-Uarquin, Fernando
  last_name: Gonzalez-Uarquin
- first_name: Yesim Isil
  full_name: Ulman, Yesim Isil
  last_name: Ulman
- first_name: Orsolya Ivett
  full_name: Hoffmann, Orsolya Ivett
  last_name: Hoffmann
- first_name: Maria
  full_name: Kitsara, Maria
  last_name: Kitsara
- first_name: Nikolaos
  full_name: Kostomitsopoulos, Nikolaos
  last_name: Kostomitsopoulos
- first_name: Winfried
  full_name: Neuhaus, Winfried
  last_name: Neuhaus
- first_name: Benoit
  full_name: Petit-Demouliere, Benoit
  last_name: Petit-Demouliere
- first_name: Simone
  full_name: Pollo, Simone
  last_name: Pollo
- first_name: Brígida
  full_name: Riso, Brígida
  last_name: Riso
- first_name: Sophie
  full_name: Schober, Sophie
  id: 80b0a0ef-4b9f-11ec-b119-8d9d94c4a1d8
  last_name: Schober
- first_name: Athanassia
  full_name: Sotiropoulos, Athanassia
  last_name: Sotiropoulos
- first_name: Aurélie
  full_name: Thomas, Aurélie
  last_name: Thomas
- first_name: Augusto
  full_name: Vitale, Augusto
  last_name: Vitale
- first_name: Doris
  full_name: Wilflingseder, Doris
  last_name: Wilflingseder
- first_name: Arti
  full_name: Ahluwalia, Arti
  last_name: Ahluwalia
citation:
  ama: Lauwereyns J, Bajramovic J, Bert B, et al. Toward a common interpretation of
    the 3Rs principles in animal research. <i>Lab Animal</i>. 2024;53:347-350. doi:<a
    href="https://doi.org/10.1038/s41684-024-01476-2">10.1038/s41684-024-01476-2</a>
  apa: Lauwereyns, J., Bajramovic, J., Bert, B., Camenzind, S., De Kock, J., Elezović,
    A., … Ahluwalia, A. (2024). Toward a common interpretation of the 3Rs principles
    in animal research. <i>Lab Animal</i>. Springer Nature. <a href="https://doi.org/10.1038/s41684-024-01476-2">https://doi.org/10.1038/s41684-024-01476-2</a>
  chicago: Lauwereyns, Jan, Jeffrey Bajramovic, Bettina Bert, Samuel Camenzind, Joery
    De Kock, Alisa Elezović, Sevilay Erden, et al. “Toward a Common Interpretation
    of the 3Rs Principles in Animal Research.” <i>Lab Animal</i>. Springer Nature,
    2024. <a href="https://doi.org/10.1038/s41684-024-01476-2">https://doi.org/10.1038/s41684-024-01476-2</a>.
  ieee: J. Lauwereyns <i>et al.</i>, “Toward a common interpretation of the 3Rs principles
    in animal research,” <i>Lab Animal</i>, vol. 53. Springer Nature, pp. 347–350,
    2024.
  ista: Lauwereyns J, Bajramovic J, Bert B, Camenzind S, De Kock J, Elezović A, Erden
    S, Gonzalez-Uarquin F, Ulman YI, Hoffmann OI, Kitsara M, Kostomitsopoulos N, Neuhaus
    W, Petit-Demouliere B, Pollo S, Riso B, Schober S, Sotiropoulos A, Thomas A, Vitale
    A, Wilflingseder D, Ahluwalia A. 2024. Toward a common interpretation of the 3Rs
    principles in animal research. Lab Animal. 53, 347–350.
  mla: Lauwereyns, Jan, et al. “Toward a Common Interpretation of the 3Rs Principles
    in Animal Research.” <i>Lab Animal</i>, vol. 53, Springer Nature, 2024, pp. 347–50,
    doi:<a href="https://doi.org/10.1038/s41684-024-01476-2">10.1038/s41684-024-01476-2</a>.
  short: J. Lauwereyns, J. Bajramovic, B. Bert, S. Camenzind, J. De Kock, A. Elezović,
    S. Erden, F. Gonzalez-Uarquin, Y.I. Ulman, O.I. Hoffmann, M. Kitsara, N. Kostomitsopoulos,
    W. Neuhaus, B. Petit-Demouliere, S. Pollo, B. Riso, S. Schober, A. Sotiropoulos,
    A. Thomas, A. Vitale, D. Wilflingseder, A. Ahluwalia, Lab Animal 53 (2024) 347–350.
date_created: 2024-11-24T23:01:49Z
date_published: 2024-12-01T00:00:00Z
date_updated: 2025-09-08T14:50:31Z
day: '01'
ddc:
- '570'
department:
- _id: PreCl
doi: 10.1038/s41684-024-01476-2
external_id:
  isi:
  - '001355264100001'
  pmid:
  - '39548348'
file:
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  date_created: 2024-12-03T14:07:04Z
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  success: 1
file_date_updated: 2024-12-03T14:07:04Z
has_accepted_license: '1'
intvolume: '        53'
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language:
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month: '12'
oa: 1
oa_version: Published Version
page: 347-350
pmid: 1
publication: Lab Animal
publication_identifier:
  eissn:
  - 1548-4475
  issn:
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publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Toward a common interpretation of the 3Rs principles in animal research
tmp:
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type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 53
year: '2024'
...
---
_id: '15164'
abstract:
- lang: eng
  text: Primary implant stability, which refers to the stability of the implant during
    the initial healing period is a crucial factor in determining the long-term success
    of the implant and lays the foundation for secondary implant stability achieved
    through osseointegration. Factors affecting primary stability include implant
    design, surgical technique, and patient-specific factors like bone quality and
    morphology. In vivo, the cyclic nature of anatomical loading puts osteosynthesis
    locking screws under dynamic loads, which can lead to the formation of micro cracks
    and defects that slowly degrade the mechanical connection between the bone and
    screw, thus compromising the initial stability and secondary stability of the
    implant. Monotonic quasi-static loading used for testing the holding capacity
    of implanted screws is not well suited to capture this behavior since it cannot
    capture the progressive deterioration of peri‑implant bone at small displacements.
    In order to address this issue, this study aims to determine a critical point
    of loss of primary implant stability in osteosynthesis locking screws under cyclic
    overloading by investigating the evolution of damage, dissipated energy, and permanent
    deformation. A custom-made test setup was used to test implanted 2.5 mm locking
    screws under cyclic overloading test. For each loading cycle, maximum forces and
    displacement were recorded as well as initial and final cycle displacements and
    used to calculate damage and energy dissipation evolution. The results of this
    study demonstrate that for axial, shear, and mixed loading significant damage
    and energy dissipation can be observed at approximately 20 % of the failure force.
    Additionally, at this load level, permanent deformations on the screw-bone interface
    were found to be in the range of 50 to 150 mm which promotes osseointegration
    and secondary implant stability. This research can assist surgeons in making informed
    preoperative decisions by providing a better understanding of the critical point
    of loss of primary implant stability, thus improving the long-term success of
    the implant and overall patient satisfaction.
acknowledgement: The authors declare no conflict of interest related to this study.
  This project was funded by the Gesellschaft fuer Forschungsfoerderung Niederoesterreich
  m.b.H. Life Science Call 2017 Grant No. LS17004 and Science call 2019 Dissertationen
  Grant No. SC19014. No ethical approval was required for this study.
article_number: '104143'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Juan D.
  full_name: Silva-Henao, Juan D.
  last_name: Silva-Henao
- first_name: Sophie
  full_name: Schober, Sophie
  id: 80b0a0ef-4b9f-11ec-b119-8d9d94c4a1d8
  last_name: Schober
- first_name: Dieter H.
  full_name: Pahr, Dieter H.
  last_name: Pahr
- first_name: Andreas G.
  full_name: Reisinger, Andreas G.
  last_name: Reisinger
citation:
  ama: Silva-Henao JD, Schober S, Pahr DH, Reisinger AG. Critical loss of primary
    implant stability in osteosynthesis locking screws under cyclic overloading. <i>Medical
    Engineering and Physics</i>. 2024;126. doi:<a href="https://doi.org/10.1016/j.medengphy.2024.104143">10.1016/j.medengphy.2024.104143</a>
  apa: Silva-Henao, J. D., Schober, S., Pahr, D. H., &#38; Reisinger, A. G. (2024).
    Critical loss of primary implant stability in osteosynthesis locking screws under
    cyclic overloading. <i>Medical Engineering and Physics</i>. Elsevier. <a href="https://doi.org/10.1016/j.medengphy.2024.104143">https://doi.org/10.1016/j.medengphy.2024.104143</a>
  chicago: Silva-Henao, Juan D., Sophie Schober, Dieter H. Pahr, and Andreas G. Reisinger.
    “Critical Loss of Primary Implant Stability in Osteosynthesis Locking Screws under
    Cyclic Overloading.” <i>Medical Engineering and Physics</i>. Elsevier, 2024. <a
    href="https://doi.org/10.1016/j.medengphy.2024.104143">https://doi.org/10.1016/j.medengphy.2024.104143</a>.
  ieee: J. D. Silva-Henao, S. Schober, D. H. Pahr, and A. G. Reisinger, “Critical
    loss of primary implant stability in osteosynthesis locking screws under cyclic
    overloading,” <i>Medical Engineering and Physics</i>, vol. 126. Elsevier, 2024.
  ista: Silva-Henao JD, Schober S, Pahr DH, Reisinger AG. 2024. Critical loss of primary
    implant stability in osteosynthesis locking screws under cyclic overloading. Medical
    Engineering and Physics. 126, 104143.
  mla: Silva-Henao, Juan D., et al. “Critical Loss of Primary Implant Stability in
    Osteosynthesis Locking Screws under Cyclic Overloading.” <i>Medical Engineering
    and Physics</i>, vol. 126, 104143, Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.medengphy.2024.104143">10.1016/j.medengphy.2024.104143</a>.
  short: J.D. Silva-Henao, S. Schober, D.H. Pahr, A.G. Reisinger, Medical Engineering
    and Physics 126 (2024).
date_created: 2024-03-24T23:00:58Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2025-09-04T13:11:03Z
day: '01'
ddc:
- '610'
department:
- _id: PreCl
doi: 10.1016/j.medengphy.2024.104143
external_id:
  isi:
  - '001219145400001'
  pmid:
  - '38621845'
file:
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  creator: dernst
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file_date_updated: 2024-03-25T08:29:52Z
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language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Medical Engineering and Physics
publication_identifier:
  eissn:
  - 1873-4030
  issn:
  - 1350-4533
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Critical loss of primary implant stability in osteosynthesis locking screws
  under cyclic overloading
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 126
year: '2024'
...
---
_id: '15385'
abstract:
- lang: eng
  text: "Relevant information about the data can be found in the 'Readme_Data.txt'
    file. \r\nA previous version of the publication can be found on BioRxiv: https://www.biorxiv.org/content/10.1101/2022.10.11.511691v4\r\nand
    published in Plos Biology (2024)"
acknowledged_ssus:
- _id: PreCl
- _id: M-Shop
- _id: LifeSc
- _id: Bio
acknowledgement: 'We thank Armel Nicolas, Bella Bruszel and Ewelina Dutkiewicz from
  the ISTA Mass Spectrometry Service (Lab Services Facilities) for all Proteomics
  work, including samples preparation, LC/MS data acquisition, searches and data evaluation.
  We thank Prof. Peter Jonas for his suggestion on the involvement of potassium channels
  and members of the Neuroethology group for their comments on the manuscript. Katalin
  Szigeti and Julie Murmann for experimental help. This research was supported by
  the Scientific Service Units of ISTA through resources provided by the Lab Support
  Facility, the Imaging and Optics Facility, the Machine Shop Unit and the Preclinical
  Facility, especially Freyja Langer and Michael Schunn. '
article_processing_charge: No
author:
- first_name: Laura
  full_name: Burnett, Laura
  id: 3B717F68-F248-11E8-B48F-1D18A9856A87
  last_name: Burnett
  orcid: 0000-0002-8937-410X
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: Olga
  full_name: Symonova, Olga
  id: 3C0C7BC6-F248-11E8-B48F-1D18A9856A87
  last_name: Symonova
  orcid: 0000-0003-2012-9947
- first_name: Tomas
  full_name: Masson, Tomas
  id: 93ac43e8-8599-11eb-9b86-f6efb0a4c207
  last_name: Masson
  orcid: 0000-0002-2634-6283
- first_name: Tomas A
  full_name: Vega Zuniga, Tomas A
  id: 2E7C4E78-F248-11E8-B48F-1D18A9856A87
  last_name: Vega Zuniga
- first_name: Ximena
  full_name: Contreras, Ximena
  id: 475990FE-F248-11E8-B48F-1D18A9856A87
  last_name: Contreras
- first_name: Thomas
  full_name: Rülicke, Thomas
  last_name: Rülicke
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Maximilian A
  full_name: Jösch, Maximilian A
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
citation:
  ama: Burnett L, Koppensteiner P, Symonova O, et al. Shared behavioural impairments
    in visual perception and place avoidance across different autism models are driven
    by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice. 2024.
    doi:<a href="https://doi.org/10.15479/AT:ISTA:15385">10.15479/AT:ISTA:15385</a>
  apa: Burnett, L., Koppensteiner, P., Symonova, O., Masson, T., Vega Zuniga, T. A.,
    Contreras, X., … Jösch, M. A. (2024). Shared behavioural impairments in visual
    perception and place avoidance across different autism models are driven by periaqueductal
    grey hypoexcitability in Setd5 haploinsufficient mice. Institute of Science and
    Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:15385">https://doi.org/10.15479/AT:ISTA:15385</a>
  chicago: Burnett, Laura, Peter Koppensteiner, Olga Symonova, Tomas Masson, Tomas
    A Vega Zuniga, Ximena Contreras, Thomas Rülicke, Ryuichi Shigemoto, Gaia Novarino,
    and Maximilian A Jösch. “Shared Behavioural Impairments in Visual Perception and
    Place Avoidance across Different Autism Models Are Driven by Periaqueductal Grey
    Hypoexcitability in Setd5 Haploinsufficient Mice.” Institute of Science and Technology
    Austria, 2024. <a href="https://doi.org/10.15479/AT:ISTA:15385">https://doi.org/10.15479/AT:ISTA:15385</a>.
  ieee: L. Burnett <i>et al.</i>, “Shared behavioural impairments in visual perception
    and place avoidance across different autism models are driven by periaqueductal
    grey hypoexcitability in Setd5 haploinsufficient mice.” Institute of Science and
    Technology Austria, 2024.
  ista: Burnett L, Koppensteiner P, Symonova O, Masson T, Vega Zuniga TA, Contreras
    X, Rülicke T, Shigemoto R, Novarino G, Jösch MA. 2024. Shared behavioural impairments
    in visual perception and place avoidance across different autism models are driven
    by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice, Institute
    of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:15385">10.15479/AT:ISTA:15385</a>.
  mla: Burnett, Laura, et al. <i>Shared Behavioural Impairments in Visual Perception
    and Place Avoidance across Different Autism Models Are Driven by Periaqueductal
    Grey Hypoexcitability in Setd5 Haploinsufficient Mice</i>. Institute of Science
    and Technology Austria, 2024, doi:<a href="https://doi.org/10.15479/AT:ISTA:15385">10.15479/AT:ISTA:15385</a>.
  short: L. Burnett, P. Koppensteiner, O. Symonova, T. Masson, T.A. Vega Zuniga, X.
    Contreras, T. Rülicke, R. Shigemoto, G. Novarino, M.A. Jösch, (2024).
corr_author: '1'
date_created: 2024-05-13T15:04:04Z
date_published: 2024-05-15T00:00:00Z
date_updated: 2025-09-08T07:57:11Z
day: '15'
ddc:
- '570'
department:
- _id: MaJö
- _id: PreCl
- _id: SiHi
- _id: RySh
- _id: GaNo
doi: 10.15479/AT:ISTA:15385
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has_accepted_license: '1'
keyword:
- ASD
- periaqueductal gray
- perception
- behavior
- potassium channels
month: '05'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
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    relation: used_in_publication
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status: public
title: Shared behavioural impairments in visual perception and place avoidance across
  different autism models are driven by periaqueductal grey hypoexcitability in Setd5
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tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: research_data
user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '17280'
abstract:
- lang: eng
  text: Adherens junction–associated protein 1 (AJAP1) has been implicated in brain
    diseases; however, a pathogenic mechanism has not been identified. AJAP1 is widely
    expressed in neurons and binds to γ-aminobutyric acid type B receptors (GBRs),
    which inhibit neurotransmitter release at most synapses in the brain. Here, we
    show that AJAP1 is selectively expressed in dendrites and trans-synaptically recruits
    GBRs to presynaptic sites of neurons expressing AJAP1. We have identified several
    monoallelic AJAP1 variants in individuals with epilepsy and/or neurodevelopmental
    disorders. Specifically, we show that the variant p.(W183C) lacks binding to GBRs,
    resulting in the inability to recruit them. Ultrastructural analysis revealed
    significantly decreased presynaptic GBR levels in Ajap1−/− and Ajap1W183C/+ mice.
    Consequently, these mice exhibited reduced GBR-mediated presynaptic inhibition
    at excitatory and inhibitory synapses, along with impaired synaptic plasticity.
    Our study reveals that AJAP1 enables the postsynaptic neuron to regulate the level
    of presynaptic GBR-mediated inhibition, supporting the clinical relevance of loss-of-function
    AJAP1 variants.
acknowledgement: "Ajap1HA/HA and Ajap1W183C/+ mice were generated in collaboration
  with Pawel Pelczar at the center for transgenic models at the University of Basel,
  Switzerland. We thank the imaging core facility (IMCF, University of Basel) and
  in particular A. Ferrand for the technical assistance provided on the OMX 3D-SIM
  microscope.\r\nThis work was supported by a grant from the Swiss National Science
  Foundation (SNF) to B.B. (31003A-152970, 310030B-201291), an NIH grant to E.A. and
  E.H.S. (R01NS058721), DFG grants to B.F. (TRR 152 project ID 239283807, FA 332/15-1,
  16-1), and grants to P.S. from AIMS-2-TRIALS, which are supported by the Innovative
  Medicines Initiatives from the European Commission joint undertaking under grant
  agreement No 777394."
article_number: adk5462
article_processing_charge: Yes
article_type: original
author:
- first_name: Simon
  full_name: Früh, Simon
  last_name: Früh
- first_name: Sami
  full_name: Boudkkazi, Sami
  last_name: Boudkkazi
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: Vita
  full_name: Sereikaite, Vita
  last_name: Sereikaite
- first_name: Li Yuan
  full_name: Chen, Li Yuan
  last_name: Chen
- first_name: Diego
  full_name: Fernandez-Fernandez, Diego
  last_name: Fernandez-Fernandez
- first_name: Pascal D.
  full_name: Rem, Pascal D.
  last_name: Rem
- first_name: Daniel
  full_name: Ulrich, Daniel
  last_name: Ulrich
- first_name: Jochen
  full_name: Schwenk, Jochen
  last_name: Schwenk
- first_name: Ziyang
  full_name: Chen, Ziyang
  last_name: Chen
- first_name: Elodie Le
  full_name: Monnier, Elodie Le
  last_name: Monnier
- first_name: Thorsten
  full_name: Fritzius, Thorsten
  last_name: Fritzius
- first_name: Sabrina M.
  full_name: Innocenti, Sabrina M.
  last_name: Innocenti
- first_name: Valérie
  full_name: Besseyrias, Valérie
  last_name: Besseyrias
- first_name: Luca
  full_name: Trovò, Luca
  last_name: Trovò
- first_name: Michal
  full_name: Stawarski, Michal
  last_name: Stawarski
- first_name: Emanuela
  full_name: Argilli, Emanuela
  last_name: Argilli
- first_name: Elliott H.
  full_name: Sherr, Elliott H.
  last_name: Sherr
- first_name: Bregje
  full_name: Van Bon, Bregje
  last_name: Van Bon
- first_name: Erik Jan
  full_name: Kamsteeg, Erik Jan
  last_name: Kamsteeg
- first_name: Maria
  full_name: Iascone, Maria
  last_name: Iascone
- first_name: Alba
  full_name: Pilotta, Alba
  last_name: Pilotta
- first_name: Maria R.
  full_name: Cutrì, Maria R.
  last_name: Cutrì
- first_name: Mahshid S.
  full_name: Azamian, Mahshid S.
  last_name: Azamian
- first_name: Andrés
  full_name: Hernández-García, Andrés
  last_name: Hernández-García
- first_name: Seema R.
  full_name: Lalani, Seema R.
  last_name: Lalani
- first_name: Jill A.
  full_name: Rosenfeld, Jill A.
  last_name: Rosenfeld
- first_name: Xiaonan
  full_name: Zhao, Xiaonan
  last_name: Zhao
- first_name: Tiphanie P.
  full_name: Vogel, Tiphanie P.
  last_name: Vogel
- first_name: Herda
  full_name: Ona, Herda
  last_name: Ona
- first_name: Daryl A.
  full_name: Scott, Daryl A.
  last_name: Scott
- first_name: Peter
  full_name: Scheiffele, Peter
  last_name: Scheiffele
- first_name: Kristian
  full_name: Strømgaard, Kristian
  last_name: Strømgaard
- first_name: Mehdi
  full_name: Tafti, Mehdi
  last_name: Tafti
- first_name: Martin
  full_name: Gassmann, Martin
  last_name: Gassmann
- first_name: Bernd
  full_name: Fakler, Bernd
  last_name: Fakler
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Bernhard
  full_name: Bettler, Bernhard
  last_name: Bettler
citation:
  ama: Früh S, Boudkkazi S, Koppensteiner P, et al. Monoallelic de novo AJAP1 loss-of-
    function variants disrupt trans-synaptic control of neurotransmitter release.
    <i>Science Advances</i>. 2024;10(28). doi:<a href="https://doi.org/10.1126/sciadv.adk5462">10.1126/sciadv.adk5462</a>
  apa: Früh, S., Boudkkazi, S., Koppensteiner, P., Sereikaite, V., Chen, L. Y., Fernandez-Fernandez,
    D., … Bettler, B. (2024). Monoallelic de novo AJAP1 loss-of- function variants
    disrupt trans-synaptic control of neurotransmitter release. <i>Science Advances</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/sciadv.adk5462">https://doi.org/10.1126/sciadv.adk5462</a>
  chicago: Früh, Simon, Sami Boudkkazi, Peter Koppensteiner, Vita Sereikaite, Li Yuan
    Chen, Diego Fernandez-Fernandez, Pascal D. Rem, et al. “Monoallelic de Novo AJAP1
    Loss-of- Function Variants Disrupt Trans-Synaptic Control of Neurotransmitter
    Release.” <i>Science Advances</i>. American Association for the Advancement of
    Science, 2024. <a href="https://doi.org/10.1126/sciadv.adk5462">https://doi.org/10.1126/sciadv.adk5462</a>.
  ieee: S. Früh <i>et al.</i>, “Monoallelic de novo AJAP1 loss-of- function variants
    disrupt trans-synaptic control of neurotransmitter release,” <i>Science Advances</i>,
    vol. 10, no. 28. American Association for the Advancement of Science, 2024.
  ista: Früh S, Boudkkazi S, Koppensteiner P, Sereikaite V, Chen LY, Fernandez-Fernandez
    D, Rem PD, Ulrich D, Schwenk J, Chen Z, Monnier EL, Fritzius T, Innocenti SM,
    Besseyrias V, Trovò L, Stawarski M, Argilli E, Sherr EH, Van Bon B, Kamsteeg EJ,
    Iascone M, Pilotta A, Cutrì MR, Azamian MS, Hernández-García A, Lalani SR, Rosenfeld
    JA, Zhao X, Vogel TP, Ona H, Scott DA, Scheiffele P, Strømgaard K, Tafti M, Gassmann
    M, Fakler B, Shigemoto R, Bettler B. 2024. Monoallelic de novo AJAP1 loss-of-
    function variants disrupt trans-synaptic control of neurotransmitter release.
    Science Advances. 10(28), adk5462.
  mla: Früh, Simon, et al. “Monoallelic de Novo AJAP1 Loss-of- Function Variants Disrupt
    Trans-Synaptic Control of Neurotransmitter Release.” <i>Science Advances</i>,
    vol. 10, no. 28, adk5462, American Association for the Advancement of Science,
    2024, doi:<a href="https://doi.org/10.1126/sciadv.adk5462">10.1126/sciadv.adk5462</a>.
  short: S. Früh, S. Boudkkazi, P. Koppensteiner, V. Sereikaite, L.Y. Chen, D. Fernandez-Fernandez,
    P.D. Rem, D. Ulrich, J. Schwenk, Z. Chen, E.L. Monnier, T. Fritzius, S.M. Innocenti,
    V. Besseyrias, L. Trovò, M. Stawarski, E. Argilli, E.H. Sherr, B. Van Bon, E.J.
    Kamsteeg, M. Iascone, A. Pilotta, M.R. Cutrì, M.S. Azamian, A. Hernández-García,
    S.R. Lalani, J.A. Rosenfeld, X. Zhao, T.P. Vogel, H. Ona, D.A. Scott, P. Scheiffele,
    K. Strømgaard, M. Tafti, M. Gassmann, B. Fakler, R. Shigemoto, B. Bettler, Science
    Advances 10 (2024).
date_created: 2024-07-21T22:01:01Z
date_published: 2024-07-12T00:00:00Z
date_updated: 2025-09-08T08:15:54Z
day: '12'
ddc:
- '570'
department:
- _id: RySh
- _id: PreCl
doi: 10.1126/sciadv.adk5462
external_id:
  isi:
  - '001280159000022'
  pmid:
  - '38985877'
file:
- access_level: open_access
  checksum: 9cbc4501fcd4ba1c0811fd244031422b
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-22T06:29:27Z
  date_updated: 2024-07-22T06:29:27Z
  file_id: '17287'
  file_name: 2024_ScienceAdv_Früh.pdf
  file_size: 7241489
  relation: main_file
  success: 1
file_date_updated: 2024-07-22T06:29:27Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
issue: '28'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Monoallelic de novo AJAP1 loss-of- function variants disrupt trans-synaptic
  control of neurotransmitter release
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 10
year: '2024'
...
---
APC_amount: 804 EUR
OA_place: publisher
OA_type: gold
_id: '17232'
abstract:
- lang: eng
  text: "The lineage relationship of clonally-related cells offers important insights
    into the ontogeny and cytoarchitecture of the brain in health and disease. Here,
    we provide a protocol to concurrently assess cell lineage relationship and cell-type
    identity among clonally-related cells in situ. We first describe the preparation
    and screening of acute brain slices containing clonally-related cells labeled
    using mosaic analysis with double markers (MADM). We then outline steps to collect
    RNA from individual cells for downstream applications and cell-type identification
    using RNA sequencing.\r\nFor complete details on the use and execution of this
    protocol, please refer to Cheung et al.\r\n1"
acknowledged_ssus:
- _id: Bio
- _id: M-Shop
- _id: PreCl
acknowledgement: We thank R. Beattie and T. Asenov for designing and producing components
  of the multi-well slice recover chamber. We thank R. Shigemoto for providing equipment
  access. We thank C. Streicher and A. Heger for mouse breeding support. This work
  was supported by the Scientific Service Units of IST Austria through resources provided
  by the Imaging & Optics, Miba Machine Shop, and Preclinical facilities. G.C. received
  funding from the European Commission (IST plus postdoctoral fellowship) and S.H.
  was funded by ISTA institutional funds and the Austrian Science Fund Special Research
  Programmes (FWF SFB-F78 Neuro Stem Modulation).
article_number: '103168'
article_processing_charge: Yes
article_type: original
author:
- first_name: Giselle T
  full_name: Cheung, Giselle T
  id: 471195F6-F248-11E8-B48F-1D18A9856A87
  last_name: Cheung
  orcid: 0000-0001-8457-2572
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
  orcid: 0000-0002-7462-0048
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Cheung GT, Pauler F, Koppensteiner P, Hippenmeyer S. Protocol for mapping cell
    lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq.
    <i>STAR Protocols</i>. 2024;5(3). doi:<a href="https://doi.org/10.1016/j.xpro.2024.103168">10.1016/j.xpro.2024.103168</a>
  apa: Cheung, G. T., Pauler, F., Koppensteiner, P., &#38; Hippenmeyer, S. (2024).
    Protocol for mapping cell lineage and cell-type identity of clonally-related cells
    in situ using MADM-CloneSeq. <i>STAR Protocols</i>. Elsevier. <a href="https://doi.org/10.1016/j.xpro.2024.103168">https://doi.org/10.1016/j.xpro.2024.103168</a>
  chicago: Cheung, Giselle T, Florian Pauler, Peter Koppensteiner, and Simon Hippenmeyer.
    “Protocol for Mapping Cell Lineage and Cell-Type Identity of Clonally-Related
    Cells in Situ Using MADM-CloneSeq.” <i>STAR Protocols</i>. Elsevier, 2024. <a
    href="https://doi.org/10.1016/j.xpro.2024.103168">https://doi.org/10.1016/j.xpro.2024.103168</a>.
  ieee: G. T. Cheung, F. Pauler, P. Koppensteiner, and S. Hippenmeyer, “Protocol for
    mapping cell lineage and cell-type identity of clonally-related cells in situ
    using MADM-CloneSeq,” <i>STAR Protocols</i>, vol. 5, no. 3. Elsevier, 2024.
  ista: Cheung GT, Pauler F, Koppensteiner P, Hippenmeyer S. 2024. Protocol for mapping
    cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq.
    STAR Protocols. 5(3), 103168.
  mla: Cheung, Giselle T., et al. “Protocol for Mapping Cell Lineage and Cell-Type
    Identity of Clonally-Related Cells in Situ Using MADM-CloneSeq.” <i>STAR Protocols</i>,
    vol. 5, no. 3, 103168, Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.xpro.2024.103168">10.1016/j.xpro.2024.103168</a>.
  short: G.T. Cheung, F. Pauler, P. Koppensteiner, S. Hippenmeyer, STAR Protocols
    5 (2024).
corr_author: '1'
date_created: 2024-07-14T22:01:10Z
date_published: 2024-09-20T00:00:00Z
date_updated: 2025-12-30T10:54:12Z
day: '20'
ddc:
- '570'
department:
- _id: SiHi
- _id: PreCl
doi: 10.1016/j.xpro.2024.103168
external_id:
  pmid:
  - '38968076'
file:
- access_level: open_access
  checksum: 464f52ecc6ec92f509552823bb82bf79
  content_type: application/pdf
  creator: dernst
  date_created: 2025-01-09T12:16:53Z
  date_updated: 2025-01-09T12:16:53Z
  file_id: '18810'
  file_name: 2024_STARProtoc_Cheung2.pdf
  file_size: 6445556
  relation: main_file
  success: 1
file_date_updated: 2025-01-09T12:16:53Z
has_accepted_license: '1'
intvolume: '         5'
issue: '3'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
  grant_number: F7805
  name: Stem Cell Modulation in Neural Development and Regeneration/ P05-Molecular
    Mechanisms of Neural Stem Cell Lineage Progression
publication: STAR Protocols
publication_identifier:
  eissn:
  - 2666-1667
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Protocol for mapping cell lineage and cell-type identity of clonally-related
  cells in situ using MADM-CloneSeq
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2024'
...
---
_id: '12224'
abstract:
- lang: eng
  text: Muskelin (Mkln1) is implicated in neuronal function, regulating plasma membrane
    receptor trafficking. However, its influence on intrinsic brain activity and corresponding
    behavioral processes remains unclear. Here we show that murine <jats:italic>Mkln1</jats:italic>
    knockout causes non-habituating locomotor activity, increased exploratory drive,
    and decreased locomotor response to amphetamine. Muskelin deficiency impairs social
    novelty detection while promoting the retention of spatial reference memory and
    fear extinction recall. This is strongly mirrored in either weaker or stronger
    resting-state functional connectivity between critical circuits mediating locomotor
    exploration and cognition. We show that <jats:italic>Mkln1</jats:italic> deletion
    alters dendrite branching and spine structure, coinciding with enhanced AMPAR-mediated
    synaptic transmission but selective impairment in synaptic potentiation maintenance.
    We identify muskelin at excitatory synapses and highlight its role in regulating
    dendritic spine actin stability. Our findings point to aberrant spine actin modulation
    and changes in glutamatergic synaptic function as critical mechanisms that contribute
    to the neurobehavioral phenotype arising from <jats:italic>Mkln1</jats:italic>
    ablation.
acknowledgement: "The authors are grateful to the UKE Animal Facilities (Hamburg)
  for animal husbandry and Dr. Bastian Tiemann for his veterinary expertise and supervision
  of animal care. We thank Dr. Franco Lombino for critically reading the manuscript
  and for helpful discussion. This work was supported by grants from the Deutsche
  Forschungsgemeinschaft (DFG) (FOR2419-KN556/11-1, FOR2419-KN556/11-2, KN556/12-1)
  and the Landesforschungsförderung Hamburg (LFF-FV76) to M.K.\r\nOpen Access funding
  enabled and organized by Projekt DEAL."
article_number: '589'
article_processing_charge: No
article_type: original
author:
- first_name: Mary W
  full_name: Muhia, Mary W
  id: ab7ed20f-09f7-11eb-909c-d5d0b443ee9d
  last_name: Muhia
- first_name: PingAn
  full_name: YuanXiang, PingAn
  last_name: YuanXiang
- first_name: Jan
  full_name: Sedlacik, Jan
  last_name: Sedlacik
- first_name: Jürgen R.
  full_name: Schwarz, Jürgen R.
  last_name: Schwarz
- first_name: Frank F.
  full_name: Heisler, Frank F.
  last_name: Heisler
- first_name: Kira V.
  full_name: Gromova, Kira V.
  last_name: Gromova
- first_name: Edda
  full_name: Thies, Edda
  last_name: Thies
- first_name: Petra
  full_name: Breiden, Petra
  last_name: Breiden
- first_name: Yvonne
  full_name: Pechmann, Yvonne
  last_name: Pechmann
- first_name: Michael R.
  full_name: Kreutz, Michael R.
  last_name: Kreutz
- first_name: Matthias
  full_name: Kneussel, Matthias
  last_name: Kneussel
citation:
  ama: Muhia MW, YuanXiang P, Sedlacik J, et al. Muskelin regulates actin-dependent
    synaptic changes and intrinsic brain activity relevant to behavioral and cognitive
    processes. <i>Communications Biology</i>. 2022;5. doi:<a href="https://doi.org/10.1038/s42003-022-03446-1">10.1038/s42003-022-03446-1</a>
  apa: Muhia, M. W., YuanXiang, P., Sedlacik, J., Schwarz, J. R., Heisler, F. F.,
    Gromova, K. V., … Kneussel, M. (2022). Muskelin regulates actin-dependent synaptic
    changes and intrinsic brain activity relevant to behavioral and cognitive processes.
    <i>Communications Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s42003-022-03446-1">https://doi.org/10.1038/s42003-022-03446-1</a>
  chicago: Muhia, Mary W, PingAn YuanXiang, Jan Sedlacik, Jürgen R. Schwarz, Frank
    F. Heisler, Kira V. Gromova, Edda Thies, et al. “Muskelin Regulates Actin-Dependent
    Synaptic Changes and Intrinsic Brain Activity Relevant to Behavioral and Cognitive
    Processes.” <i>Communications Biology</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s42003-022-03446-1">https://doi.org/10.1038/s42003-022-03446-1</a>.
  ieee: M. W. Muhia <i>et al.</i>, “Muskelin regulates actin-dependent synaptic changes
    and intrinsic brain activity relevant to behavioral and cognitive processes,”
    <i>Communications Biology</i>, vol. 5. Springer Nature, 2022.
  ista: Muhia MW, YuanXiang P, Sedlacik J, Schwarz JR, Heisler FF, Gromova KV, Thies
    E, Breiden P, Pechmann Y, Kreutz MR, Kneussel M. 2022. Muskelin regulates actin-dependent
    synaptic changes and intrinsic brain activity relevant to behavioral and cognitive
    processes. Communications Biology. 5, 589.
  mla: Muhia, Mary W., et al. “Muskelin Regulates Actin-Dependent Synaptic Changes
    and Intrinsic Brain Activity Relevant to Behavioral and Cognitive Processes.”
    <i>Communications Biology</i>, vol. 5, 589, Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s42003-022-03446-1">10.1038/s42003-022-03446-1</a>.
  short: M.W. Muhia, P. YuanXiang, J. Sedlacik, J.R. Schwarz, F.F. Heisler, K.V. Gromova,
    E. Thies, P. Breiden, Y. Pechmann, M.R. Kreutz, M. Kneussel, Communications Biology
    5 (2022).
corr_author: '1'
date_created: 2023-01-16T09:48:19Z
date_published: 2022-06-15T00:00:00Z
date_updated: 2024-10-09T21:03:48Z
day: '15'
ddc:
- '570'
department:
- _id: PreCl
doi: 10.1038/s42003-022-03446-1
external_id:
  isi:
  - '000811777900003'
file:
- access_level: open_access
  checksum: bd95be1e77090208b79bc45ea8785d0b
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-27T08:23:46Z
  date_updated: 2023-01-27T08:23:46Z
  file_id: '12417'
  file_name: 2022_CommBiology_Muhia.pdf
  file_size: 3968356
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T08:23:46Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
- Medicine (miscellaneous)
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Communications Biology
publication_identifier:
  issn:
  - 2399-3642
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Muskelin regulates actin-dependent synaptic changes and intrinsic brain activity
  relevant to behavioral and cognitive processes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 5
year: '2022'
...
---
_id: '10283'
abstract:
- lang: eng
  text: 'During the past decade, the scientific community and outside observers have
    noted a concerning lack of rigor and transparency in preclinical research that
    led to talk of a “reproducibility crisis” in the life sciences (Baker, 2016; Bespalov
    & Steckler, 2018; Heddleston et al, 2021). Various measures have been proposed
    to address the problem: from better training of scientists to more oversight to
    expanded publishing practices such as preregistration of studies. The recently
    published EQIPD (Enhancing Quality in Preclinical Data) System is, to date, the
    largest initiative that aims to establish a systematic approach for increasing
    the robustness and reliability of biomedical research (Bespalov et al, 2021).
    However, promoting a cultural change in research practices warrants a broad adoption
    of the Quality System and its underlying philosophy. It is here that academic
    Core Facilities (CF), research service providers at universities and research
    institutions, can make a difference. It is fair to assume that a significant fraction
    of published data originated from experiments that were designed, run, or analyzed
    in CFs. These academic services play an important role in the research ecosystem
    by offering access to cutting-edge equipment and by developing and testing novel
    techniques and methods that impact research in the academic and private sectors
    alike (Bikovski et al, 2020). Equipment and infrastructure are not the only value:
    CFs employ competent personnel with profound knowledge and practical experience
    of the specific field of interest: animal behavior, imaging, crystallography,
    genomics, and so on. Thus, CFs are optimally positioned to address concerns about
    the quality and robustness of preclinical research.'
acknowledgement: This EQIPD project has received funding from the Innovative Medicines
  Initiative 2 Joint Undertaking under grant agreement no. 777364. This Joint Undertaking
  receives support from the European Union’s Horizon 2020 research and innovation
  program and EFPIA. LR was supported by the Faculty of Biology and Medicine, University
  of Lausanne. VV was supported by Biocenter Finland and the Jane and Aatos Erkko
  Foundation. CP and IKB received funding from the Federal Ministry of Education and
  Research (BMBF, grant 01PW18001). SB from the Vienna BioCenter Core Facilities (VBCF)
  Preclinical Phenotyping Facility acknowledges funding from the Austrian Federal
  Ministry of Education, Science & Research; and the City of Vienna. MT is an incumbent
  of the Carolito Stiftung Research Fellow Chair in Neurodegenerative Diseases. We
  thank Dr. Katja Kivinen (Helsinki Institute of Life Science) for discussions and
  feedback.
article_number: e53824
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Leonardo
  full_name: Restivo, Leonardo
  last_name: Restivo
- first_name: Björn
  full_name: Gerlach, Björn
  last_name: Gerlach
- first_name: Michael
  full_name: Tsoory, Michael
  last_name: Tsoory
- first_name: Lior
  full_name: Bikovski, Lior
  last_name: Bikovski
- first_name: Sylvia
  full_name: Badurek, Sylvia
  last_name: Badurek
- first_name: Claudia
  full_name: Pitzer, Claudia
  last_name: Pitzer
- first_name: Isabelle C.
  full_name: Kos-Braun, Isabelle C.
  last_name: Kos-Braun
- first_name: Anne Laure Mj
  full_name: Mausset-Bonnefont, Anne Laure Mj
  last_name: Mausset-Bonnefont
- first_name: Jonathan
  full_name: Ward, Jonathan
  last_name: Ward
- first_name: Michael
  full_name: Schunn, Michael
  id: 4272DB4A-F248-11E8-B48F-1D18A9856A87
  last_name: Schunn
  orcid: 0000-0003-4326-5300
- first_name: Lucas P.J.J.
  full_name: Noldus, Lucas P.J.J.
  last_name: Noldus
- first_name: Anton
  full_name: Bespalov, Anton
  last_name: Bespalov
- first_name: Vootele
  full_name: Voikar, Vootele
  last_name: Voikar
citation:
  ama: 'Restivo L, Gerlach B, Tsoory M, et al. Towards best practices in research:
    Role of academic core facilities. <i>EMBO Reports</i>. 2021;22. doi:<a href="https://doi.org/10.15252/embr.202153824">10.15252/embr.202153824</a>'
  apa: 'Restivo, L., Gerlach, B., Tsoory, M., Bikovski, L., Badurek, S., Pitzer, C.,
    … Voikar, V. (2021). Towards best practices in research: Role of academic core
    facilities. <i>EMBO Reports</i>. EMBO Press. <a href="https://doi.org/10.15252/embr.202153824">https://doi.org/10.15252/embr.202153824</a>'
  chicago: 'Restivo, Leonardo, Björn Gerlach, Michael Tsoory, Lior Bikovski, Sylvia
    Badurek, Claudia Pitzer, Isabelle C. Kos-Braun, et al. “Towards Best Practices
    in Research: Role of Academic Core Facilities.” <i>EMBO Reports</i>. EMBO Press,
    2021. <a href="https://doi.org/10.15252/embr.202153824">https://doi.org/10.15252/embr.202153824</a>.'
  ieee: 'L. Restivo <i>et al.</i>, “Towards best practices in research: Role of academic
    core facilities,” <i>EMBO Reports</i>, vol. 22. EMBO Press, 2021.'
  ista: 'Restivo L, Gerlach B, Tsoory M, Bikovski L, Badurek S, Pitzer C, Kos-Braun
    IC, Mausset-Bonnefont ALM, Ward J, Schunn M, Noldus LPJJ, Bespalov A, Voikar V.
    2021. Towards best practices in research: Role of academic core facilities. EMBO
    Reports. 22, e53824.'
  mla: 'Restivo, Leonardo, et al. “Towards Best Practices in Research: Role of Academic
    Core Facilities.” <i>EMBO Reports</i>, vol. 22, e53824, EMBO Press, 2021, doi:<a
    href="https://doi.org/10.15252/embr.202153824">10.15252/embr.202153824</a>.'
  short: L. Restivo, B. Gerlach, M. Tsoory, L. Bikovski, S. Badurek, C. Pitzer, I.C.
    Kos-Braun, A.L.M. Mausset-Bonnefont, J. Ward, M. Schunn, L.P.J.J. Noldus, A. Bespalov,
    V. Voikar, EMBO Reports 22 (2021).
date_created: 2021-11-14T23:01:24Z
date_published: 2021-11-04T00:00:00Z
date_updated: 2023-08-14T11:47:35Z
day: '04'
ddc:
- '570'
department:
- _id: PreCl
doi: 10.15252/embr.202153824
external_id:
  isi:
  - '000714350000001'
file:
- access_level: open_access
  checksum: 74743baa6ef431ef60c3de3bc4da045a
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  creator: dernst
  date_created: 2022-05-16T07:07:41Z
  date_updated: 2022-05-16T07:07:41Z
  file_id: '11381'
  file_name: 2021_EmboReports_Restivo.pdf
  file_size: 488583
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  success: 1
file_date_updated: 2022-05-16T07:07:41Z
has_accepted_license: '1'
intvolume: '        22'
isi: 1
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: EMBO Reports
publication_identifier:
  eissn:
  - 1469-3178
  issn:
  - 1469-221X
publication_status: published
publisher: EMBO Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Towards best practices in research: Role of academic core facilities'
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 22
year: '2021'
...
---
_id: '9607'
abstract:
- lang: eng
  text: While high risk of failure is an inherent part of developing innovative therapies,
    it can be reduced by adherence to evidence-based rigorous research practices.
    Numerous analyses conducted to date have clearly identified measures that need
    to be taken to improve research rigor. Supported through the European Union's
    Innovative Medicines Initiative, the EQIPD consortium has developed a novel preclinical
    research quality system that can be applied in both public and private sectors
    and is free for anyone to use. The EQIPD Quality System was designed to be suited
    to boost innovation by ensuring the generation of robust and reliable preclinical
    data while being lean, effective and not becoming a burden that could negatively
    impact the freedom to explore scientific questions. EQIPD defines research quality
    as the extent to which research data are fit for their intended use. Fitness,
    in this context, is defined by the stakeholders, who are the scientists directly
    involved in the research, but also their funders, sponsors, publishers, research
    tool manufacturers and collaboration partners such as peers in a multi-site research
    project. The essence of the EQIPD Quality System is the set of 18 core requirements
    that can be addressed flexibly, according to user-specific needs and following
    a user-defined trajectory. The EQIPD Quality System proposes guidance on expectations
    for quality-related measures, defines criteria for adequate processes (i.e., performance
    standards) and provides examples of how such measures can be developed and implemented.
    However, it does not prescribe any pre-determined solutions. EQIPD has also developed
    tools (for optional use) to support users in implementing the system and assessment
    services for those research units that successfully implement the quality system
    and seek formal accreditation. Building upon the feedback from users and continuous
    improvement, a sustainable EQIPD Quality System will ultimately serve the entire
    community of scientists conducting non-regulated preclinical research, by helping
    them generate reliable data that are fit for their intended use.
acknowledgement: This project has received funding from the Innovative Medicines Initiative
  2 Joint Undertaking under grant agreement No 777364. This Joint Undertaking receives
  support from the European Union’s Horizon 2020 research and innovation programme
  and EFPIA. The authors are very grateful to Martin Heinrich (Abbvie, Ludwigshafen,
  Germany) for the exceptional IT support and programming the EQIPD Planning Tool
  and the Creator Tool and to Dr Shai Silberberg (NINDS, USA), Dr. Renza Roncarati
  (PAASP Italy) and Dr Judith Homberg (Radboud University, Nijmegen) for highly stimulating
  contributions to the discussions and comments on earlier versions of this manuscript.
  We also wish to express our thanks to Dr. Sara Stöber (concentris research management
  GmbH, Fürstenfeldbruck, Germany) for excellent and continuous support of this project.
  Creation of the EQIPD Stakeholder group was supported by Noldus Information Technology
  bv (Wageningen, the Netherlands).
article_processing_charge: No
article_type: original
author:
- first_name: Anton
  full_name: Bespalov, Anton
  last_name: Bespalov
- first_name: René
  full_name: Bernard, René
  last_name: Bernard
- first_name: Anja
  full_name: Gilis, Anja
  last_name: Gilis
- first_name: Björn
  full_name: Gerlach, Björn
  last_name: Gerlach
- first_name: Javier
  full_name: Guillén, Javier
  last_name: Guillén
- first_name: Vincent
  full_name: Castagné, Vincent
  last_name: Castagné
- first_name: Isabel A.
  full_name: Lefevre, Isabel A.
  last_name: Lefevre
- first_name: Fiona
  full_name: Ducrey, Fiona
  last_name: Ducrey
- first_name: Lee
  full_name: Monk, Lee
  last_name: Monk
- first_name: Sandrine
  full_name: Bongiovanni, Sandrine
  last_name: Bongiovanni
- first_name: Bruce
  full_name: Altevogt, Bruce
  last_name: Altevogt
- first_name: María
  full_name: Arroyo-Araujo, María
  last_name: Arroyo-Araujo
- first_name: Lior
  full_name: Bikovski, Lior
  last_name: Bikovski
- first_name: Natasja
  full_name: De Bruin, Natasja
  last_name: De Bruin
- first_name: Esmeralda
  full_name: Castaños-Vélez, Esmeralda
  last_name: Castaños-Vélez
- first_name: Alexander
  full_name: Dityatev, Alexander
  last_name: Dityatev
- first_name: Christoph H.
  full_name: Emmerich, Christoph H.
  last_name: Emmerich
- first_name: Raafat
  full_name: Fares, Raafat
  last_name: Fares
- first_name: Chantelle
  full_name: Ferland-Beckham, Chantelle
  last_name: Ferland-Beckham
- first_name: Christelle
  full_name: Froger-Colléaux, Christelle
  last_name: Froger-Colléaux
- first_name: Valerie
  full_name: Gailus-Durner, Valerie
  last_name: Gailus-Durner
- first_name: Sabine M.
  full_name: Hölter, Sabine M.
  last_name: Hölter
- first_name: Martine Cj
  full_name: Hofmann, Martine Cj
  last_name: Hofmann
- first_name: Patricia
  full_name: Kabitzke, Patricia
  last_name: Kabitzke
- first_name: Martien Jh
  full_name: Kas, Martien Jh
  last_name: Kas
- first_name: Claudia
  full_name: Kurreck, Claudia
  last_name: Kurreck
- first_name: Paul
  full_name: Moser, Paul
  last_name: Moser
- first_name: Malgorzata
  full_name: Pietraszek, Malgorzata
  last_name: Pietraszek
- first_name: Piotr
  full_name: Popik, Piotr
  last_name: Popik
- first_name: Heidrun
  full_name: Potschka, Heidrun
  last_name: Potschka
- first_name: Ernesto
  full_name: Prado Montes De Oca, Ernesto
  last_name: Prado Montes De Oca
- first_name: Leonardo
  full_name: Restivo, Leonardo
  last_name: Restivo
- first_name: Gernot
  full_name: Riedel, Gernot
  last_name: Riedel
- first_name: Merel
  full_name: Ritskes-Hoitinga, Merel
  last_name: Ritskes-Hoitinga
- first_name: Janko
  full_name: Samardzic, Janko
  last_name: Samardzic
- first_name: Michael
  full_name: Schunn, Michael
  id: 4272DB4A-F248-11E8-B48F-1D18A9856A87
  last_name: Schunn
  orcid: 0000-0003-4326-5300
- first_name: Claudia
  full_name: Stöger, Claudia
  last_name: Stöger
- first_name: Vootele
  full_name: Voikar, Vootele
  last_name: Voikar
- first_name: Jan
  full_name: Vollert, Jan
  last_name: Vollert
- first_name: Kimberley E.
  full_name: Wever, Kimberley E.
  last_name: Wever
- first_name: Kathleen
  full_name: Wuyts, Kathleen
  last_name: Wuyts
- first_name: Malcolm R.
  full_name: Macleod, Malcolm R.
  last_name: Macleod
- first_name: Ulrich
  full_name: Dirnagl, Ulrich
  last_name: Dirnagl
- first_name: Thomas
  full_name: Steckler, Thomas
  last_name: Steckler
citation:
  ama: Bespalov A, Bernard R, Gilis A, et al. Introduction to the EQIPD quality system.
    <i>eLife</i>. 2021;10. doi:<a href="https://doi.org/10.7554/eLife.63294">10.7554/eLife.63294</a>
  apa: Bespalov, A., Bernard, R., Gilis, A., Gerlach, B., Guillén, J., Castagné, V.,
    … Steckler, T. (2021). Introduction to the EQIPD quality system. <i>ELife</i>.
    eLife Sciences Publications. <a href="https://doi.org/10.7554/eLife.63294">https://doi.org/10.7554/eLife.63294</a>
  chicago: Bespalov, Anton, René Bernard, Anja Gilis, Björn Gerlach, Javier Guillén,
    Vincent Castagné, Isabel A. Lefevre, et al. “Introduction to the EQIPD Quality
    System.” <i>ELife</i>. eLife Sciences Publications, 2021. <a href="https://doi.org/10.7554/eLife.63294">https://doi.org/10.7554/eLife.63294</a>.
  ieee: A. Bespalov <i>et al.</i>, “Introduction to the EQIPD quality system,” <i>eLife</i>,
    vol. 10. eLife Sciences Publications, 2021.
  ista: Bespalov A, Bernard R, Gilis A, Gerlach B, Guillén J, Castagné V, Lefevre
    IA, Ducrey F, Monk L, Bongiovanni S, Altevogt B, Arroyo-Araujo M, Bikovski L,
    De Bruin N, Castaños-Vélez E, Dityatev A, Emmerich CH, Fares R, Ferland-Beckham
    C, Froger-Colléaux C, Gailus-Durner V, Hölter SM, Hofmann MC, Kabitzke P, Kas
    MJ, Kurreck C, Moser P, Pietraszek M, Popik P, Potschka H, Prado Montes De Oca
    E, Restivo L, Riedel G, Ritskes-Hoitinga M, Samardzic J, Schunn M, Stöger C, Voikar
    V, Vollert J, Wever KE, Wuyts K, Macleod MR, Dirnagl U, Steckler T. 2021. Introduction
    to the EQIPD quality system. eLife. 10.
  mla: Bespalov, Anton, et al. “Introduction to the EQIPD Quality System.” <i>ELife</i>,
    vol. 10, eLife Sciences Publications, 2021, doi:<a href="https://doi.org/10.7554/eLife.63294">10.7554/eLife.63294</a>.
  short: A. Bespalov, R. Bernard, A. Gilis, B. Gerlach, J. Guillén, V. Castagné, I.A.
    Lefevre, F. Ducrey, L. Monk, S. Bongiovanni, B. Altevogt, M. Arroyo-Araujo, L.
    Bikovski, N. De Bruin, E. Castaños-Vélez, A. Dityatev, C.H. Emmerich, R. Fares,
    C. Ferland-Beckham, C. Froger-Colléaux, V. Gailus-Durner, S.M. Hölter, M.C. Hofmann,
    P. Kabitzke, M.J. Kas, C. Kurreck, P. Moser, M. Pietraszek, P. Popik, H. Potschka,
    E. Prado Montes De Oca, L. Restivo, G. Riedel, M. Ritskes-Hoitinga, J. Samardzic,
    M. Schunn, C. Stöger, V. Voikar, J. Vollert, K.E. Wever, K. Wuyts, M.R. Macleod,
    U. Dirnagl, T. Steckler, ELife 10 (2021).
date_created: 2021-06-27T22:01:49Z
date_published: 2021-05-24T00:00:00Z
date_updated: 2026-04-02T13:55:57Z
day: '24'
ddc:
- '570'
department:
- _id: PreCl
doi: 10.7554/eLife.63294
external_id:
  isi:
  - '000661272000001'
  pmid:
  - '34028353'
file:
- access_level: open_access
  checksum: 885b746051a7a6b6e24e3d2781a48fde
  content_type: application/pdf
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  date_created: 2021-06-28T11:35:30Z
  date_updated: 2021-06-28T11:35:30Z
  file_id: '9609'
  file_name: 2021_ELife_Bespalov.pdf
  file_size: 2500720
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has_accepted_license: '1'
intvolume: '        10'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Introduction to the EQIPD quality system
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 10
year: '2021'
...
---
_id: '9603'
abstract:
- lang: eng
  text: Mosaic analysis with double markers (MADM) offers one approach to visualize
    and concomitantly manipulate genetically defined cells in mice with single-cell
    resolution. MADM applications include the analysis of lineage, single-cell morphology
    and physiology, genomic imprinting phenotypes, and dissection of cell-autonomous
    gene functions in vivo in health and disease. Yet, MADM can only be applied to
    <25% of all mouse genes on select chromosomes to date. To overcome this limitation,
    we generate transgenic mice with knocked-in MADM cassettes near the centromeres
    of all 19 autosomes and validate their use across organs. With this resource,
    >96% of the entire mouse genome can now be subjected to single-cell genetic mosaic
    analysis. Beyond a proof of principle, we apply our MADM library to systematically
    trace sister chromatid segregation in distinct mitotic cell lineages. We find
    striking chromosome-specific biases in segregation patterns, reflecting a putative
    mechanism for the asymmetric segregation of genetic determinants in somatic stem
    cell division.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: PreCl
acknowledgement: We thank the Bioimaging, Life Science, and Pre-Clinical Facilities
  at IST Austria; M.P. Postiglione, C. Simbriger, K. Valoskova, C. Schwayer, T. Hussain,
  M. Pieber, and V. Wimmer for initial experiments, technical support, and/or assistance;
  R. Shigemoto for sharing iv (Dnah11 mutant) mice; and M. Sixt and all members of
  the Hippenmeyer lab for discussion. This work was supported by National Institutes
  of Health grants ( R01-NS050580 to L.L. and F32MH096361 to L.A.S.). L.L. is an investigator
  of HHMI. N.A. received support from FWF Firnberg-Programm ( T 1031 ). A.H.H. is
  a recipient of a DOC Fellowship (24812) of the Austrian Academy of Sciences . This
  work also received support from IST Austria institutional funds , FWF SFB F78 to
  S.H., the People Programme (Marie Curie Actions) of the European Union’s Seventh
  Framework Programme ( FP7/2007-2013 ) under REA grant agreement no 618444 to S.H.,
  and the European Research Council (ERC) under the European Union’s Horizon 2020
  Research and Innovation Programme (grant agreement no. 725780 LinPro ) to S.H.
article_number: '109274'
article_processing_charge: No
article_type: original
author:
- first_name: Ximena
  full_name: Contreras, Ximena
  id: 475990FE-F248-11E8-B48F-1D18A9856A87
  last_name: Contreras
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Amarbayasgalan
  full_name: Davaatseren, Amarbayasgalan
  id: 70ADC922-B424-11E9-99E3-BA18E6697425
  last_name: Davaatseren
- first_name: Andi H
  full_name: Hansen, Andi H
  id: 38853E16-F248-11E8-B48F-1D18A9856A87
  last_name: Hansen
- first_name: Johanna
  full_name: Sonntag, Johanna
  id: 32FE7D7C-F248-11E8-B48F-1D18A9856A87
  last_name: Sonntag
- first_name: Lill
  full_name: Andersen, Lill
  last_name: Andersen
- first_name: Tina
  full_name: Bernthaler, Tina
  last_name: Bernthaler
- first_name: Carmen
  full_name: Streicher, Carmen
  id: 36BCB99C-F248-11E8-B48F-1D18A9856A87
  last_name: Streicher
- first_name: Anna-Magdalena
  full_name: Heger, Anna-Magdalena
  id: 4B76FFD2-F248-11E8-B48F-1D18A9856A87
  last_name: Heger
- first_name: Randy L.
  full_name: Johnson, Randy L.
  last_name: Johnson
- first_name: Lindsay A.
  full_name: Schwarz, Lindsay A.
  last_name: Schwarz
- first_name: Liqun
  full_name: Luo, Liqun
  last_name: Luo
- first_name: Thomas
  full_name: Rülicke, Thomas
  last_name: Rülicke
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Contreras X, Amberg N, Davaatseren A, et al. A genome-wide library of MADM
    mice for single-cell genetic mosaic analysis. <i>Cell Reports</i>. 2021;35(12).
    doi:<a href="https://doi.org/10.1016/j.celrep.2021.109274">10.1016/j.celrep.2021.109274</a>
  apa: Contreras, X., Amberg, N., Davaatseren, A., Hansen, A. H., Sonntag, J., Andersen,
    L., … Hippenmeyer, S. (2021). A genome-wide library of MADM mice for single-cell
    genetic mosaic analysis. <i>Cell Reports</i>. Cell Press. <a href="https://doi.org/10.1016/j.celrep.2021.109274">https://doi.org/10.1016/j.celrep.2021.109274</a>
  chicago: Contreras, Ximena, Nicole Amberg, Amarbayasgalan Davaatseren, Andi H Hansen,
    Johanna Sonntag, Lill Andersen, Tina Bernthaler, et al. “A Genome-Wide Library
    of MADM Mice for Single-Cell Genetic Mosaic Analysis.” <i>Cell Reports</i>. Cell
    Press, 2021. <a href="https://doi.org/10.1016/j.celrep.2021.109274">https://doi.org/10.1016/j.celrep.2021.109274</a>.
  ieee: X. Contreras <i>et al.</i>, “A genome-wide library of MADM mice for single-cell
    genetic mosaic analysis,” <i>Cell Reports</i>, vol. 35, no. 12. Cell Press, 2021.
  ista: Contreras X, Amberg N, Davaatseren A, Hansen AH, Sonntag J, Andersen L, Bernthaler
    T, Streicher C, Heger A-M, Johnson RL, Schwarz LA, Luo L, Rülicke T, Hippenmeyer
    S. 2021. A genome-wide library of MADM mice for single-cell genetic mosaic analysis.
    Cell Reports. 35(12), 109274.
  mla: Contreras, Ximena, et al. “A Genome-Wide Library of MADM Mice for Single-Cell
    Genetic Mosaic Analysis.” <i>Cell Reports</i>, vol. 35, no. 12, 109274, Cell Press,
    2021, doi:<a href="https://doi.org/10.1016/j.celrep.2021.109274">10.1016/j.celrep.2021.109274</a>.
  short: X. Contreras, N. Amberg, A. Davaatseren, A.H. Hansen, J. Sonntag, L. Andersen,
    T. Bernthaler, C. Streicher, A.-M. Heger, R.L. Johnson, L.A. Schwarz, L. Luo,
    T. Rülicke, S. Hippenmeyer, Cell Reports 35 (2021).
date_created: 2021-06-27T22:01:48Z
date_published: 2021-06-22T00:00:00Z
date_updated: 2026-04-02T14:04:28Z
day: '22'
ddc:
- '570'
department:
- _id: SiHi
- _id: LoSw
- _id: PreCl
doi: 10.1016/j.celrep.2021.109274
ec_funded: 1
external_id:
  isi:
  - '000664463600016'
  pmid:
  - '34161767'
file:
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  date_updated: 2021-06-28T14:06:24Z
  file_id: '9613'
  file_name: 2021_CellReports_Contreras.pdf
  file_size: 7653149
  relation: main_file
  success: 1
file_date_updated: 2021-06-28T14:06:24Z
has_accepted_license: '1'
intvolume: '        35'
isi: 1
issue: '12'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2625A13E-B435-11E9-9278-68D0E5697425
  grant_number: '24812'
  name: Molecular mechanisms of radial neuronal migration
- _id: 25D61E48-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '618444'
  name: Molecular Mechanisms of Cerebral Cortex Development
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: Cell Reports
publication_identifier:
  eissn:
  - 2211-1247
publication_status: published
publisher: Cell Press
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/boost-for-mouse-genetic-analysis/
scopus_import: '1'
status: public
title: A genome-wide library of MADM mice for single-cell genetic mosaic analysis
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 35
year: '2021'
...
---
_id: '6607'
abstract:
- lang: eng
  text: Acute myeloid leukemia (AML) is a heterogeneous disease with respect to its
    genetic and molecular basis and to patients´ outcome. Clinical, cytogenetic, and
    mutational data are used to classify patients into risk groups with different
    survival, however, within-group heterogeneity is still an issue. Here, we used
    a robust likelihood-based survival modeling approach and publicly available gene
    expression data to identify a minimal number of genes whose combined expression
    values were prognostic of overall survival. The resulting gene expression signature
    (4-GES) consisted of 4 genes (SOCS2, IL2RA, NPDC1, PHGDH), predicted patient survival
    as an independent prognostic parameter in several cohorts of AML patients (total,
    1272 patients), and further refined prognostication based on the European Leukemia
    Net classification. An oncogenic role of the top scoring gene in this signature,
    SOCS2, was investigated using MLL-AF9 and Flt3-ITD/NPM1c driven mouse models of
    AML. SOCS2 promoted leukemogenesis as well as the abundance, quiescence, and activity
    of AML stem cells. Overall, the 4-GES represents a highly discriminating prognostic
    parameter in AML, whose clinical applicability is greatly enhanced by its small
    number of genes. The newly established role of SOCS2 in leukemia aggressiveness
    and stemness raises the possibility that the signature might even be exploitable
    therapeutically.
article_number: '9139'
article_processing_charge: No
author:
- first_name: Chi Huu
  full_name: Nguyen, Chi Huu
  last_name: Nguyen
- first_name: Tobias
  full_name: Glüxam, Tobias
  last_name: Glüxam
- first_name: Angela
  full_name: Schlerka, Angela
  last_name: Schlerka
- first_name: Katharina
  full_name: Bauer, Katharina
  id: 2ED6B14C-F248-11E8-B48F-1D18A9856A87
  last_name: Bauer
- first_name: Alexander M.
  full_name: Grandits, Alexander M.
  last_name: Grandits
- first_name: Hubert
  full_name: Hackl, Hubert
  last_name: Hackl
- first_name: Oliver
  full_name: Dovey, Oliver
  last_name: Dovey
- first_name: Sabine
  full_name: Zöchbauer-Müller, Sabine
  last_name: Zöchbauer-Müller
- first_name: Jonathan L.
  full_name: Cooper, Jonathan L.
  last_name: Cooper
- first_name: George S.
  full_name: Vassiliou, George S.
  last_name: Vassiliou
- first_name: Dagmar
  full_name: Stoiber, Dagmar
  last_name: Stoiber
- first_name: Rotraud
  full_name: Wieser, Rotraud
  last_name: Wieser
- first_name: Gerwin
  full_name: Heller, Gerwin
  last_name: Heller
citation:
  ama: Nguyen CH, Glüxam T, Schlerka A, et al. SOCS2 is part of a highly prognostic
    4-gene signature in AML and promotes disease aggressiveness. <i>Scientific Reports</i>.
    2019;9(1). doi:<a href="https://doi.org/10.1038/s41598-019-45579-0">10.1038/s41598-019-45579-0</a>
  apa: Nguyen, C. H., Glüxam, T., Schlerka, A., Bauer, K., Grandits, A. M., Hackl,
    H., … Heller, G. (2019). SOCS2 is part of a highly prognostic 4-gene signature
    in AML and promotes disease aggressiveness. <i>Scientific Reports</i>. Nature
    Publishing Group. <a href="https://doi.org/10.1038/s41598-019-45579-0">https://doi.org/10.1038/s41598-019-45579-0</a>
  chicago: Nguyen, Chi Huu, Tobias Glüxam, Angela Schlerka, Katharina Bauer, Alexander
    M. Grandits, Hubert Hackl, Oliver Dovey, et al. “SOCS2 Is Part of a Highly Prognostic
    4-Gene Signature in AML and Promotes Disease Aggressiveness.” <i>Scientific Reports</i>.
    Nature Publishing Group, 2019. <a href="https://doi.org/10.1038/s41598-019-45579-0">https://doi.org/10.1038/s41598-019-45579-0</a>.
  ieee: C. H. Nguyen <i>et al.</i>, “SOCS2 is part of a highly prognostic 4-gene signature
    in AML and promotes disease aggressiveness,” <i>Scientific Reports</i>, vol. 9,
    no. 1. Nature Publishing Group, 2019.
  ista: Nguyen CH, Glüxam T, Schlerka A, Bauer K, Grandits AM, Hackl H, Dovey O, Zöchbauer-Müller
    S, Cooper JL, Vassiliou GS, Stoiber D, Wieser R, Heller G. 2019. SOCS2 is part
    of a highly prognostic 4-gene signature in AML and promotes disease aggressiveness.
    Scientific Reports. 9(1), 9139.
  mla: Nguyen, Chi Huu, et al. “SOCS2 Is Part of a Highly Prognostic 4-Gene Signature
    in AML and Promotes Disease Aggressiveness.” <i>Scientific Reports</i>, vol. 9,
    no. 1, 9139, Nature Publishing Group, 2019, doi:<a href="https://doi.org/10.1038/s41598-019-45579-0">10.1038/s41598-019-45579-0</a>.
  short: C.H. Nguyen, T. Glüxam, A. Schlerka, K. Bauer, A.M. Grandits, H. Hackl, O.
    Dovey, S. Zöchbauer-Müller, J.L. Cooper, G.S. Vassiliou, D. Stoiber, R. Wieser,
    G. Heller, Scientific Reports 9 (2019).
date_created: 2019-07-07T21:59:19Z
date_published: 2019-06-24T00:00:00Z
date_updated: 2023-08-28T12:26:51Z
day: '24'
ddc:
- '576'
department:
- _id: PreCl
doi: 10.1038/s41598-019-45579-0
external_id:
  isi:
  - '000472597400042'
file:
- access_level: open_access
  checksum: 3283522fffadf4b5fc8c7adfe3ba4564
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-07-08T15:15:28Z
  date_updated: 2020-07-14T12:47:34Z
  file_id: '6623'
  file_name: nature_2019_Nguyen.pdf
  file_size: 2017352
  relation: main_file
file_date_updated: 2020-07-14T12:47:34Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: SOCS2 is part of a highly prognostic 4-gene signature in AML and promotes disease
  aggressiveness
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2019'
...
