[{"date_published":"2022-12-01T00:00:00Z","title":"Predictive learning enables neural networks to learn complex working memory tasks","month":"12","scopus_import":"1","intvolume":"       199","_id":"13239","year":"2022","language":[{"iso":"eng"}],"article_processing_charge":"No","ec_funded":1,"status":"public","abstract":[{"lang":"eng","text":"Brains are thought to engage in predictive learning - learning to predict upcoming stimuli - to construct an internal model of their environment. This is especially notable for spatial navigation, as first described by Tolman’s latent learning tasks. However, predictive learning has also been observed in sensory cortex, in settings unrelated to spatial navigation. Apart from normative frameworks such as active inference or efficient coding, what could be the utility of learning to predict the patterns of occurrence of correlated stimuli? Here we show that prediction, and thereby the construction of an internal model of sequential stimuli, can bootstrap the learning process of a working memory task in a recurrent neural network. We implemented predictive learning alongside working memory match-tasks, and networks emerged to solve the prediction task first by encoding information across time to predict upcoming stimuli, and then eavesdropped on this solution to solve the matching task. Eavesdropping was most beneficial when neural resources were limited. Hence, predictive learning acts as a general neural mechanism to learn to store sensory information that can later be essential for working memory tasks."}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"volume":199,"publication_identifier":{"eissn":["2640-3498"]},"date_updated":"2025-04-14T07:54:31Z","project":[{"name":"Learning the shape of synaptic plasticity rules for neuronal architectures and function through machine learning.","grant_number":"819603","call_identifier":"H2020","_id":"0aacfa84-070f-11eb-9043-d7eb2c709234"}],"author":[{"full_name":"Van Der Plas, Thijs L.","first_name":"Thijs L.","last_name":"Van Der Plas"},{"full_name":"Vogels, Tim P","orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","last_name":"Vogels","first_name":"Tim P"},{"first_name":"Sanjay G.","last_name":"Manohar","full_name":"Manohar, Sanjay G."}],"date_created":"2023-07-16T22:01:12Z","acknowledgement":"The authors would like to thank members of the Vogels lab and Manohar lab, as well as Adam Packer, Andrew Saxe, Stefano Sarao Mannelli and Jacob Bakermans for fruitful discussions and comments on earlier versions of the manuscript.\r\nTLvdP was supported by funding from the Biotechnology and Biological Sciences Research Council (BBSRC) [grant number BB/M011224/1]. TPV was supported by an ERC Consolidator Grant (SYNAPSEEK). SGM was funded by a MRC Clinician Scientist Fellowship MR/P00878X and Leverhulme Grant RPG-2018-310.","citation":{"mla":"Van Der Plas, Thijs L., et al. “Predictive Learning Enables Neural Networks to Learn Complex Working Memory Tasks.” <i>Proceedings of Machine Learning Research</i>, vol. 199, ML Research Press, 2022, pp. 518–31.","apa":"Van Der Plas, T. L., Vogels, T. P., &#38; Manohar, S. G. (2022). Predictive learning enables neural networks to learn complex working memory tasks. In <i>Proceedings of Machine Learning Research</i> (Vol. 199, pp. 518–531). ML Research Press.","ama":"Van Der Plas TL, Vogels TP, Manohar SG. Predictive learning enables neural networks to learn complex working memory tasks. In: <i>Proceedings of Machine Learning Research</i>. Vol 199. ML Research Press; 2022:518-531.","chicago":"Van Der Plas, Thijs L., Tim P Vogels, and Sanjay G. Manohar. “Predictive Learning Enables Neural Networks to Learn Complex Working Memory Tasks.” In <i>Proceedings of Machine Learning Research</i>, 199:518–31. ML Research Press, 2022.","ista":"Van Der Plas TL, Vogels TP, Manohar SG. 2022. Predictive learning enables neural networks to learn complex working memory tasks. Proceedings of Machine Learning Research. vol. 199, 518–531.","ieee":"T. L. Van Der Plas, T. P. Vogels, and S. G. Manohar, “Predictive learning enables neural networks to learn complex working memory tasks,” in <i>Proceedings of Machine Learning Research</i>, 2022, vol. 199, pp. 518–531.","short":"T.L. Van Der Plas, T.P. Vogels, S.G. Manohar, in:, Proceedings of Machine Learning Research, ML Research Press, 2022, pp. 518–531."},"day":"01","file_date_updated":"2023-07-18T06:32:38Z","page":"518-531","publication":"Proceedings of Machine Learning Research","ddc":["000"],"publisher":"ML Research Press","has_accepted_license":"1","department":[{"_id":"TiVo"}],"file":[{"creator":"dernst","access_level":"open_access","checksum":"7530a93ef42e10b4db1e5e4b69796e93","date_updated":"2023-07-18T06:32:38Z","file_name":"2022_PMLR_vanderPlas.pdf","date_created":"2023-07-18T06:32:38Z","relation":"main_file","file_size":585135,"content_type":"application/pdf","file_id":"13243","success":1}],"type":"conference","publication_status":"published","quality_controlled":"1"},{"article_type":"original","article_processing_charge":"Yes","language":[{"iso":"eng"}],"status":"public","title":"Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis","month":"10","scopus_import":"1","date_published":"2022-10-19T00:00:00Z","year":"2022","_id":"13240","intvolume":"         3","date_updated":"2024-03-06T14:01:57Z","publication_identifier":{"eissn":["2673-6128"]},"author":[{"full_name":"Ingole, Kishor D.","last_name":"Ingole","first_name":"Kishor D."},{"last_name":"Nagarajan","first_name":"Nithya","full_name":"Nagarajan, Nithya"},{"full_name":"Uhse, Simon","last_name":"Uhse","first_name":"Simon"},{"full_name":"Giannini, Caterina","id":"e3fdddd5-f6e0-11ea-865d-ca99ee6367f4","first_name":"Caterina","last_name":"Giannini"},{"last_name":"Djamei","first_name":"Armin","full_name":"Djamei, Armin"}],"date_created":"2023-07-16T22:01:12Z","oa_version":"Published Version","abstract":[{"lang":"eng","text":"Ustilago maydis is a biotrophic phytopathogenic fungus that causes corn smut disease. As a well-established model system, U. maydis is genetically fully accessible with large omics datasets available and subject to various biological questions ranging from DNA-repair, RNA-transport, and protein secretion to disease biology. For many genetic approaches, tight control of transgene regulation is important. Here we established an optimised version of the Tetracycline-ON (TetON) system for U. maydis. We demonstrate the Tetracycline concentration-dependent expression of fluorescent protein transgenes and the system’s suitability for the induced expression of the toxic protein BCL2 Associated X-1 (Bax1). The Golden Gate compatible vector system contains a native minimal promoter from the mating factor a-1 encoding gene, mfa with ten copies of the tet-regulated operator (tetO) and a codon optimised Tet-repressor (tetR*) which is translationally fused to the native transcriptional corepressor Mql1 (UMAG_05501). The metabolism-independent transcriptional regulator system is functional both, in liquid culture as well as on solid media in the presence of the inducer and can become a useful tool for toxin-antitoxin studies, identification of antifungal proteins, and to study functions of toxic gene products in Ustilago maydis."}],"volume":3,"oa":1,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2023-07-17T11:46:34Z","acknowledgement":"The research leading to these results received funding from the European Research Council under the European Union’s Seventh Framework Programme ERC-2013-STG (grant agreement: 335691), the Austrian Science Fund (I 3033-B22), the Austrian Academy of Sciences, and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy EXC-2070-390732324 (PhenoRob) and DFG grant (DJ 64/5-1).\r\nWe would like to thank the GMI/IMBA/IMP core facilities for their excellent technical support. We would like to acknowledge Dr. Sinéad A. O’Sullivan from DZNE, University of Bonn for providing anti-GFP antibodies. The authors are thankful to the Excellence University of Bonn for providing infrastructure and instrumentation facilities at the INRES-Plant Pathology department.","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"doi":"10.3389/ffunb.2022.1029114","license":"https://creativecommons.org/licenses/by/4.0/","article_number":"1029114","citation":{"ieee":"K. D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, and A. Djamei, “Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis,” <i>Frontiers in Fungal Biology</i>, vol. 3. Frontiers Media, 2022.","short":"K.D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, A. Djamei, Frontiers in Fungal Biology 3 (2022).","ama":"Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis. <i>Frontiers in Fungal Biology</i>. 2022;3. doi:<a href=\"https://doi.org/10.3389/ffunb.2022.1029114\">10.3389/ffunb.2022.1029114</a>","apa":"Ingole, K. D., Nagarajan, N., Uhse, S., Giannini, C., &#38; Djamei, A. (2022). Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis. <i>Frontiers in Fungal Biology</i>. Frontiers Media. <a href=\"https://doi.org/10.3389/ffunb.2022.1029114\">https://doi.org/10.3389/ffunb.2022.1029114</a>","ista":"Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. 2022. Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis. Frontiers in Fungal Biology. 3, 1029114.","chicago":"Ingole, Kishor D., Nithya Nagarajan, Simon Uhse, Caterina Giannini, and Armin Djamei. “Tetracycline-Controlled (TetON) Gene Expression System for the Smut Fungus Ustilago Maydis.” <i>Frontiers in Fungal Biology</i>. Frontiers Media, 2022. <a href=\"https://doi.org/10.3389/ffunb.2022.1029114\">https://doi.org/10.3389/ffunb.2022.1029114</a>.","mla":"Ingole, Kishor D., et al. “Tetracycline-Controlled (TetON) Gene Expression System for the Smut Fungus Ustilago Maydis.” <i>Frontiers in Fungal Biology</i>, vol. 3, 1029114, Frontiers Media, 2022, doi:<a href=\"https://doi.org/10.3389/ffunb.2022.1029114\">10.3389/ffunb.2022.1029114</a>."},"day":"19","file":[{"file_name":"2023_FrontiersFungalBio_Ingole.pdf","date_updated":"2023-07-17T11:46:34Z","checksum":"2254e0119c0749d6f7237084fefcece6","creator":"dernst","access_level":"open_access","relation":"main_file","date_created":"2023-07-17T11:46:34Z","file_size":27966699,"content_type":"application/pdf","file_id":"13242","success":1}],"department":[{"_id":"JiFr"}],"quality_controlled":"1","type":"journal_article","publication_status":"published","publication":"Frontiers in Fungal Biology","ddc":["579"],"has_accepted_license":"1","publisher":"Frontiers Media"},{"page":"59-83","acknowledgement":"This paper is a shortened, workshop version of Konstantinov and Lampert (2021),\r\nhttps://arxiv.org/abs/2102.06004. For further results, including an analysis of algorithms achieving the lower bounds from this paper, we refer to the full version.","main_file_link":[{"url":"https://arxiv.org/abs/2102.06004","open_access":"1"}],"citation":{"mla":"Konstantinov, Nikola H., and Christoph Lampert. “On the Impossibility of Fairness-Aware Learning from Corrupted Data.” <i>Proceedings of Machine Learning Research</i>, vol. 171, ML Research Press, 2022, pp. 59–83.","chicago":"Konstantinov, Nikola H, and Christoph Lampert. “On the Impossibility of Fairness-Aware Learning from Corrupted Data.” In <i>Proceedings of Machine Learning Research</i>, 171:59–83. ML Research Press, 2022.","ista":"Konstantinov NH, Lampert C. 2022. On the impossibility of fairness-aware learning from corrupted data. Proceedings of Machine Learning Research. vol. 171, 59–83.","ama":"Konstantinov NH, Lampert C. On the impossibility of fairness-aware learning from corrupted data. In: <i>Proceedings of Machine Learning Research</i>. Vol 171. ML Research Press; 2022:59-83.","apa":"Konstantinov, N. H., &#38; Lampert, C. (2022). On the impossibility of fairness-aware learning from corrupted data. In <i>Proceedings of Machine Learning Research</i> (Vol. 171, pp. 59–83). ML Research Press.","short":"N.H. Konstantinov, C. Lampert, in:, Proceedings of Machine Learning Research, ML Research Press, 2022, pp. 59–83.","ieee":"N. H. Konstantinov and C. Lampert, “On the impossibility of fairness-aware learning from corrupted data,” in <i>Proceedings of Machine Learning Research</i>, 2022, vol. 171, pp. 59–83."},"day":"01","department":[{"_id":"ChLa"}],"corr_author":"1","type":"conference","publication_status":"published","quality_controlled":"1","publication":"Proceedings of Machine Learning Research","publisher":"ML Research Press","related_material":{"record":[{"id":"10802","status":"public","relation":"extended_version"}]},"language":[{"iso":"eng"}],"article_processing_charge":"No","status":"public","date_published":"2022-12-01T00:00:00Z","title":"On the impossibility of fairness-aware learning from corrupted data","month":"12","scopus_import":"1","intvolume":"       171","year":"2022","_id":"13241","publication_identifier":{"eissn":["2640-3498"]},"date_updated":"2024-10-09T21:05:54Z","author":[{"full_name":"Konstantinov, Nikola H","id":"4B9D76E4-F248-11E8-B48F-1D18A9856A87","last_name":"Konstantinov","first_name":"Nikola H"},{"id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","last_name":"Lampert","first_name":"Christoph","full_name":"Lampert, Christoph","orcid":"0000-0001-8622-7887"}],"date_created":"2023-07-16T22:01:13Z","abstract":[{"text":"Addressing fairness concerns about machine learning models is a crucial step towards their long-term adoption in real-world automated systems. Many approaches for training fair models from data have been developed and an implicit assumption about such algorithms is that they are able to recover a fair model, despite potential historical biases in the data. In this work we show a number of impossibility results that indicate that there is no learning algorithm that can recover a fair model when a proportion of the dataset is subject to arbitrary manipulations. Specifically, we prove that there are situations in which an adversary can force any learner to return a biased classifier, with or without degrading accuracy, and that the strength of this bias increases for learning problems with underrepresented protected groups in the data. Our results emphasize on the importance of studying further data corruption models of various strength and of establishing stricter data collection practices for fairness-aware learning.","lang":"eng"}],"arxiv":1,"oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"arxiv":["2102.06004"]},"volume":171,"oa":1},{"date_updated":"2025-09-24T09:12:13Z","publication_identifier":{"isbn":["9783985470587"],"eisbn":["9783985475582"]},"date_created":"2025-07-10T13:13:36Z","author":[{"first_name":"Tamás","last_name":"Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9582-2634","full_name":"Hausel, Tamás"}],"arxiv":1,"oa_version":"Published Version","abstract":[{"lang":"eng","text":"The first part of this paper is a survey of mathematical results on mirror symmetry phenomena between Hitchin systems for Langlands dual groups. The second part introduces\r\nand discusses multiplicity algebras of the Hitchin system on Lagrangians, and considers\r\ncorresponding conjectural structures on their mirror."}],"oa":1,"OA_type":"gold","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"arxiv":["2112.09455"]},"article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","month":"07","title":"Enhanced mirror symmetry for Langlands dual Hitchin systems","date_published":"2022-07-15T00:00:00Z","year":"2022","_id":"19984","file":[{"date_created":"2025-09-24T09:05:05Z","relation":"main_file","checksum":"d2b9d4cf51c854f1082d8dc18c5853b1","creator":"dernst","access_level":"open_access","date_updated":"2025-09-24T09:05:05Z","file_name":"2022_ICM_Hausel.pdf","file_id":"20387","success":1,"content_type":"application/pdf","file_size":655370}],"corr_author":"1","department":[{"_id":"TaHa"}],"quality_controlled":"1","publication_status":"published","type":"book_chapter","ddc":["510"],"publication":"International Congress of Mathematicians","has_accepted_license":"1","OA_place":"publisher","publisher":"EMS Press","file_date_updated":"2025-09-24T09:05:05Z","conference":{"start_date":"2022-07-06","name":"ICM: International Congress of Mathematicians","end_date":"2022-07-14","location":"virtuel"},"page":"2228-2249","doi":"10.4171/icm2022/164","acknowledgement":"The author thanks Nigel Hitchin for introducing him to Higgs bundles during 1995–1998,\r\nsuggesting the SYZ picture for Langlands dual Hitchin systems in 1996, and for the\r\nmore recent collaborations [29, 30]. He also thanks David Ben-Zvi, Pierre-Henri Chaudouard, Pierre Deligne, Ron Donagi, Sergei Gukov, Jochen Heinloth, Vadim Kaloshin,\r\nJoel Kamnitzer, Gérard Laumon, Anton Mellit, David Nadler, Andy Neitzke, Ngô Bao\r\nChâu, Michael Thaddeus, Tony Pantev, Du Pei, Richárd Rimányi, Leonid Rybnikov, Vivek\r\nShende, Balázs Szendrői, András Szenes, Fernando Rodriguez-Villegas, Edward Witten,\r\nand Zhiwei Yun for discussions about the subjects in this paper over the years. Thanks are\r\nalso due to Hülya Argüz, Jakub Löwit, Balázs Szendrői, and Nigel Hitchin for the careful\r\nreading of the paper.","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"15","citation":{"ieee":"T. Hausel, “Enhanced mirror symmetry for Langlands dual Hitchin systems,” in <i>International Congress of Mathematicians</i>, EMS Press, 2022, pp. 2228–2249.","short":"T. Hausel, in:, International Congress of Mathematicians, EMS Press, 2022, pp. 2228–2249.","mla":"Hausel, Tamás. “Enhanced Mirror Symmetry for Langlands Dual Hitchin Systems.” <i>International Congress of Mathematicians</i>, EMS Press, 2022, pp. 2228–49, doi:<a href=\"https://doi.org/10.4171/icm2022/164\">10.4171/icm2022/164</a>.","ama":"Hausel T. Enhanced mirror symmetry for Langlands dual Hitchin systems. In: <i>International Congress of Mathematicians</i>. EMS Press; 2022:2228-2249. doi:<a href=\"https://doi.org/10.4171/icm2022/164\">10.4171/icm2022/164</a>","apa":"Hausel, T. (2022). Enhanced mirror symmetry for Langlands dual Hitchin systems. In <i>International Congress of Mathematicians</i> (pp. 2228–2249). virtuel: EMS Press. <a href=\"https://doi.org/10.4171/icm2022/164\">https://doi.org/10.4171/icm2022/164</a>","chicago":"Hausel, Tamás. “Enhanced Mirror Symmetry for Langlands Dual Hitchin Systems.” In <i>International Congress of Mathematicians</i>, 2228–49. EMS Press, 2022. <a href=\"https://doi.org/10.4171/icm2022/164\">https://doi.org/10.4171/icm2022/164</a>.","ista":"Hausel T. 2022.Enhanced mirror symmetry for Langlands dual Hitchin systems. In: International Congress of Mathematicians. , 2228–2249."}},{"department":[{"_id":"MaJö"}],"corr_author":"1","type":"journal_article","publication_status":"published","quality_controlled":"1","publication":"Proteins: Structure, Function, and Bioinformatics","publisher":"Wiley","keyword":["Molecular Biology","Biochemistry","Structural Biology"],"page":"258-269","doi":"10.1002/prot.26217","issue":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2020.09.18.304337"}],"citation":{"mla":"Gisonno, Romina A., et al. “Evolutionary and Structural Constraints Influencing Apolipoprotein A‐I Amyloid Behavior.” <i>Proteins: Structure, Function, and Bioinformatics</i>, vol. 90, no. 1, Wiley, 2022, pp. 258–69, doi:<a href=\"https://doi.org/10.1002/prot.26217\">10.1002/prot.26217</a>.","ista":"Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, Tricerri MA. 2022. Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior. Proteins: Structure, Function, and Bioinformatics. 90(1), 258–269.","chicago":"Gisonno, Romina A., Tomas Masson, Nahuel A. Ramella, Exequiel E. Barrera, Víctor Romanowski, and M. Alejandra Tricerri. “Evolutionary and Structural Constraints Influencing Apolipoprotein A‐I Amyloid Behavior.” <i>Proteins: Structure, Function, and Bioinformatics</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/prot.26217\">https://doi.org/10.1002/prot.26217</a>.","ama":"Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, Tricerri MA. Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior. <i>Proteins: Structure, Function, and Bioinformatics</i>. 2022;90(1):258-269. doi:<a href=\"https://doi.org/10.1002/prot.26217\">10.1002/prot.26217</a>","apa":"Gisonno, R. A., Masson, T., Ramella, N. A., Barrera, E. E., Romanowski, V., &#38; Tricerri, M. A. (2022). Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior. <i>Proteins: Structure, Function, and Bioinformatics</i>. Wiley. <a href=\"https://doi.org/10.1002/prot.26217\">https://doi.org/10.1002/prot.26217</a>","short":"R.A. Gisonno, T. Masson, N.A. Ramella, E.E. Barrera, V. Romanowski, M.A. Tricerri, Proteins: Structure, Function, and Bioinformatics 90 (2022) 258–269.","ieee":"R. A. Gisonno, T. Masson, N. A. Ramella, E. E. Barrera, V. Romanowski, and M. A. Tricerri, “Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior,” <i>Proteins: Structure, Function, and Bioinformatics</i>, vol. 90, no. 1. Wiley, pp. 258–269, 2022."},"day":"01","publication_identifier":{"issn":["0887-3585"],"eissn":["1097-0134"]},"date_updated":"2024-10-09T21:08:44Z","author":[{"full_name":"Gisonno, Romina A.","first_name":"Romina A.","last_name":"Gisonno"},{"id":"93ac43e8-8599-11eb-9b86-f6efb0a4c207","first_name":"Tomas","last_name":"Masson","orcid":"0000-0002-2634-6283","full_name":"Masson, Tomas"},{"last_name":"Ramella","first_name":"Nahuel A.","full_name":"Ramella, Nahuel A."},{"first_name":"Exequiel E.","last_name":"Barrera","full_name":"Barrera, Exequiel E."},{"last_name":"Romanowski","first_name":"Víctor","full_name":"Romanowski, Víctor"},{"last_name":"Tricerri","first_name":"M. Alejandra","full_name":"Tricerri, M. Alejandra"}],"date_created":"2024-04-03T07:49:53Z","abstract":[{"lang":"eng","text":"Apolipoprotein A‐I (apoA‐I) has a key function in the reverse cholesterol transport. However, aggregation of apoA‐I single point mutants can lead to hereditary amyloid pathology. Although several studies have tackled the biophysical and structural consequences introduced by these mutations, there is little information addressing the relationship between the evolutionary and structural features that contribute to the amyloid behavior of apoA‐I. We combined evolutionary studies, in silico mutagenesis and molecular dynamics (MD) simulations to provide a comprehensive analysis of the conservation and pathogenic role of the aggregation‐prone regions (APRs) present in apoA‐I. Sequence analysis demonstrated that among the four amyloidogenic regions described for human apoA‐I, only two (APR1 and APR4) are evolutionary conserved across different species of Sarcopterygii. Moreover, stability analysis carried out with the FoldX engine showed that APR1 contributes to the marginal stability of apoA‐I. Structural properties of full‐length apoA‐I models suggest that aggregation is avoided by placing APRs into highly packed and rigid portions of its native fold. Compared to silent variants extracted from the gnomAD database, the thermodynamic and pathogenic impact of amyloid mutations showed evidence of a higher destabilizing effect. MD simulations of the amyloid variant G26R evidenced the partial unfolding of the alpha‐helix bundle with the concomitant exposure of APR1 to the solvent, suggesting an insight into the early steps involved in its aggregation. Our findings highlight APR1 as a relevant component for apoA‐I structural integrity and emphasize a destabilizing effect of amyloid variants that leads to the exposure of this region."}],"oa_version":"Preprint","pmid":1,"external_id":{"pmid":["34414600"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"volume":90,"language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"No","status":"public","date_published":"2022-01-01T00:00:00Z","title":"Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior","month":"01","intvolume":"        90","_id":"15268","year":"2022"},{"acknowledgement":"This work was supported by the European Regional Development Funds. MYL, YZ, DWY and KX thank the China Scholarship Council for scholarship support. YL acknowledges funding from the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411 and the funding for scientific research startup of Hefei University of Technology (No. 13020-03712021049). MI acknowledges funding from IST Austria and the Werner Siemens Foundation. CC acknowledges funding from the FWF “Lise Meitner Fellowship” grant agreement M 2889-N. TZ has received funding from the CSC-UAB PhD scholarship program. ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327. ICN2 thanks support from the project NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/. ICN2 is supported by the Severo Ochoa program from Spanish MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme / Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD program.","doi":"10.1016/j.cej.2021.133837","article_number":"133837","citation":{"ieee":"M. Li <i>et al.</i>, “Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application,” <i>Chemical Engineering Journal</i>, vol. 433. Elsevier, 2022.","short":"M. Li, Y. Liu, Y. Zhang, C. Chang, T. Zhang, D. Yang, K. Xiao, J. Arbiol, M. Ibáñez, A. Cabot, Chemical Engineering Journal 433 (2022).","mla":"Li, Mengyao, et al. “Room Temperature Aqueous-Based Synthesis of Copper-Doped Lead Sulfide Nanoparticles for Thermoelectric Application.” <i>Chemical Engineering Journal</i>, vol. 433, 133837, Elsevier, 2022, doi:<a href=\"https://doi.org/10.1016/j.cej.2021.133837\">10.1016/j.cej.2021.133837</a>.","ama":"Li M, Liu Y, Zhang Y, et al. Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. <i>Chemical Engineering Journal</i>. 2022;433. doi:<a href=\"https://doi.org/10.1016/j.cej.2021.133837\">10.1016/j.cej.2021.133837</a>","apa":"Li, M., Liu, Y., Zhang, Y., Chang, C., Zhang, T., Yang, D., … Cabot, A. (2022). Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. <i>Chemical Engineering Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cej.2021.133837\">https://doi.org/10.1016/j.cej.2021.133837</a>","ista":"Li M, Liu Y, Zhang Y, Chang C, Zhang T, Yang D, Xiao K, Arbiol J, Ibáñez M, Cabot A. 2022. Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. Chemical Engineering Journal. 433, 133837.","chicago":"Li, Mengyao, Yu Liu, Yu Zhang, Cheng Chang, Ting Zhang, Dawei Yang, Ke Xiao, Jordi Arbiol, Maria Ibáñez, and Andreu Cabot. “Room Temperature Aqueous-Based Synthesis of Copper-Doped Lead Sulfide Nanoparticles for Thermoelectric Application.” <i>Chemical Engineering Journal</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.cej.2021.133837\">https://doi.org/10.1016/j.cej.2021.133837</a>."},"main_file_link":[{"open_access":"1","url":"https://ddd.uab.cat/pub/artpub/2022/270830/10.1016j.cej.2021.133837.pdf"}],"isi":1,"day":"01","publication":"Chemical Engineering Journal","publisher":"Elsevier","corr_author":"1","department":[{"_id":"MaIb"}],"quality_controlled":"1","type":"journal_article","publication_status":"published","title":"Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application","month":"04","scopus_import":"1","date_published":"2022-04-01T00:00:00Z","_id":"10566","year":"2022","intvolume":"       433","article_type":"original","article_processing_charge":"No","language":[{"iso":"eng"}],"ec_funded":1,"status":"public","oa_version":"Submitted Version","abstract":[{"lang":"eng","text":"A versatile, scalable, room temperature and surfactant-free route for the synthesis of metal chalcogenide nanoparticles in aqueous solution is detailed here for the production of PbS and Cu-doped PbS nanoparticles. Subsequently, nanoparticles are annealed in a reducing atmosphere to remove surface oxide, and consolidated into dense polycrystalline materials by means of spark plasma sintering. By characterizing the transport properties of the sintered material, we observe the annealing step and the incorporation of Cu to play a key role in promoting the thermoelectric performance of PbS. The presence of Cu allows improving the electrical conductivity by increasing the charge carrier concentration and simultaneously maintaining a large charge carrier mobility, which overall translates into record power factors at ambient temperature, 2.3 mWm-1K−2. Simultaneously, the lattice thermal conductivity decreases with the introduction of Cu, leading to a record high ZT = 0.37 at room temperature and ZT = 1.22 at 773 K. Besides, a record average ZTave = 0.76 is demonstrated in the temperature range 320–773 K for n-type Pb0.955Cu0.045S."}],"volume":433,"oa":1,"external_id":{"isi":["000773425200006"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-04-14T07:43:48Z","publication_identifier":{"issn":["1385-8947"]},"author":[{"first_name":"Mengyao","last_name":"Li","full_name":"Li, Mengyao"},{"id":"2A70014E-F248-11E8-B48F-1D18A9856A87","last_name":"Liu","first_name":"Yu","full_name":"Liu, Yu","orcid":"0000-0001-7313-6740"},{"full_name":"Zhang, Yu","first_name":"Yu","last_name":"Zhang"},{"id":"9E331C2E-9F27-11E9-AE48-5033E6697425","last_name":"Chang","first_name":"Cheng","full_name":"Chang, Cheng","orcid":"0000-0002-9515-4277"},{"full_name":"Zhang, Ting","first_name":"Ting","last_name":"Zhang"},{"full_name":"Yang, Dawei","last_name":"Yang","first_name":"Dawei"},{"last_name":"Xiao","first_name":"Ke","full_name":"Xiao, Ke"},{"last_name":"Arbiol","first_name":"Jordi","full_name":"Arbiol, Jordi"},{"full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez","first_name":"Maria"},{"last_name":"Cabot","first_name":"Andreu","full_name":"Cabot, Andreu"}],"date_created":"2021-12-19T23:01:33Z","project":[{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"},{"name":"Bottom-up Engineering for Thermoelectric Applications","grant_number":"M02889","_id":"9B8804FC-BA93-11EA-9121-9846C619BF3A"},{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}]},{"page":"104-119","keyword":["flavonols","MAX2","rac-Gr24","RNA-seq","root development","transcriptional regulation"],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1093/pcp/pcab149"}],"citation":{"ama":"Struk S, Braem L, Matthys C, et al. Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. <i>Plant &#38; Cell Physiology</i>. 2022;63(1):104-119. doi:<a href=\"https://doi.org/10.1093/pcp/pcab149\">10.1093/pcp/pcab149</a>","apa":"Struk, S., Braem, L., Matthys, C., Walton, A., Vangheluwe, N., Van Praet, S., … Goormachtig, S. (2022). Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. <i>Plant &#38; Cell Physiology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/pcp/pcab149\">https://doi.org/10.1093/pcp/pcab149</a>","chicago":"Struk, Sylwia, Lukas Braem, Cedrick Matthys, Alan Walton, Nick Vangheluwe, Stan Van Praet, Lingxiang Jiang, et al. “Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.” <i>Plant &#38; Cell Physiology</i>. Oxford University Press, 2022. <a href=\"https://doi.org/10.1093/pcp/pcab149\">https://doi.org/10.1093/pcp/pcab149</a>.","ista":"Struk S, Braem L, Matthys C, Walton A, Vangheluwe N, Van Praet S, Jiang L, Baster P, De Cuyper C, Boyer F-D, Stes E, Beeckman T, Friml J, Gevaert K, Goormachtig S. 2022. Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. Plant &#38; Cell Physiology. 63(1), 104–119.","mla":"Struk, Sylwia, et al. “Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.” <i>Plant &#38; Cell Physiology</i>, vol. 63, no. 1, Oxford University Press, 2022, pp. 104–19, doi:<a href=\"https://doi.org/10.1093/pcp/pcab149\">10.1093/pcp/pcab149</a>.","ieee":"S. Struk <i>et al.</i>, “Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density,” <i>Plant &#38; Cell Physiology</i>, vol. 63, no. 1. Oxford University Press, pp. 104–119, 2022.","short":"S. Struk, L. Braem, C. Matthys, A. Walton, N. Vangheluwe, S. Van Praet, L. Jiang, P. Baster, C. De Cuyper, F.-D. Boyer, E. Stes, T. Beeckman, J. Friml, K. Gevaert, S. Goormachtig, Plant &#38; Cell Physiology 63 (2022) 104–119."},"day":"21","isi":1,"acknowledgement":"The authors thank Ralf Stracke (Bielefeld University, Bielefeld, Germany) for providing the myb mutants and their colleagues Bert De Rybel for the tmo5t;mo5l1 double mutant, Boris Parizot for tips on the RNA-seq analysis, Veronique Storme for statistical help on both the RNA-seq and lateral root density, and Martine De Cock for help in preparing the manuscript.","issue":"1","doi":"10.1093/pcp/pcab149","type":"journal_article","publication_status":"published","quality_controlled":"1","department":[{"_id":"JiFr"}],"publisher":"Oxford University Press","publication":"Plant & Cell Physiology","status":"public","language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"No","intvolume":"        63","_id":"10583","year":"2022","date_published":"2022-01-21T00:00:00Z","title":"Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density","scopus_import":"1","month":"01","author":[{"full_name":"Struk, Sylwia","first_name":"Sylwia","last_name":"Struk"},{"first_name":"Lukas","last_name":"Braem","full_name":"Braem, Lukas"},{"full_name":"Matthys, Cedrick","first_name":"Cedrick","last_name":"Matthys"},{"full_name":"Walton, Alan","first_name":"Alan","last_name":"Walton"},{"full_name":"Vangheluwe, Nick","last_name":"Vangheluwe","first_name":"Nick"},{"last_name":"Van Praet","first_name":"Stan","full_name":"Van Praet, Stan"},{"first_name":"Lingxiang","last_name":"Jiang","full_name":"Jiang, Lingxiang"},{"full_name":"Baster, Pawel","id":"3028BD74-F248-11E8-B48F-1D18A9856A87","last_name":"Baster","first_name":"Pawel"},{"full_name":"De Cuyper, Carolien","last_name":"De Cuyper","first_name":"Carolien"},{"full_name":"Boyer, Francois-Didier","first_name":"Francois-Didier","last_name":"Boyer"},{"last_name":"Stes","first_name":"Elisabeth","full_name":"Stes, Elisabeth"},{"last_name":"Beeckman","first_name":"Tom","full_name":"Beeckman, Tom"},{"first_name":"Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří"},{"first_name":"Kris","last_name":"Gevaert","full_name":"Gevaert, Kris"},{"last_name":"Goormachtig","first_name":"Sofie","full_name":"Goormachtig, Sofie"}],"date_created":"2021-12-28T11:44:18Z","publication_identifier":{"eissn":["1471-9053"],"issn":["0032-0781"]},"date_updated":"2023-08-02T13:40:43Z","external_id":{"pmid":["34791413"],"isi":["000877899400009"]},"pmid":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa":1,"volume":63,"abstract":[{"lang":"eng","text":"The synthetic strigolactone (SL) analog, rac-GR24, has been instrumental in studying the role of SLs as well as karrikins because it activates the receptors DWARF14 (D14) and KARRIKIN INSENSITIVE 2 (KAI2) of their signaling pathways, respectively. Treatment with rac-GR24 modifies the root architecture at different levels, such as decreasing the lateral root density (LRD), while promoting root hair elongation or flavonol accumulation. Previously, we have shown that the flavonol biosynthesis is transcriptionally activated in the root by rac-GR24 treatment, but, thus far, the molecular players involved in that response have remained unknown. To get an in-depth insight into the changes that occur after the compound is perceived by the roots, we compared the root transcriptomes of the wild type and the more axillary growth2 (max2) mutant, affected in both SL and karrikin signaling pathways, with and without rac-GR24 treatment. Quantitative reverse transcription (qRT)-PCR, reporter line analysis and mutant phenotyping indicated that the flavonol response and the root hair elongation are controlled by the ELONGATED HYPOCOTYL 5 (HY5) and MYB12 transcription factors, but HY5, in contrast to MYB12, affects the LRD as well. Furthermore, we identified the transcription factors TARGET OF MONOPTEROS 5 (TMO5) and TMO5 LIKE1 as negative and the Mediator complex as positive regulators of the rac-GR24 effect on LRD. Altogether, hereby, we get closer toward understanding the molecular mechanisms that underlay the rac-GR24 responses in the root."}],"oa_version":"Published Version"},{"status":"public","article_processing_charge":"Yes","article_type":"original","language":[{"iso":"eng"}],"_id":"10584","year":"2022","intvolume":"        13","scopus_import":"1","month":"01","title":"Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials","date_published":"2022-01-01T00:00:00Z","date_created":"2022-01-02T23:01:33Z","author":[{"last_name":"Nirwan","first_name":"Jorabar Singh","full_name":"Nirwan, Jorabar Singh"},{"last_name":"Lou","first_name":"Shan","full_name":"Lou, Shan"},{"last_name":"Hussain","first_name":"Saqib","full_name":"Hussain, Saqib"},{"last_name":"Nauman","first_name":"Muhammad","id":"32c21954-2022-11eb-9d5f-af9f93c24e71","full_name":"Nauman, Muhammad","orcid":"0000-0002-2111-4846"},{"full_name":"Hussain, Tariq","last_name":"Hussain","first_name":"Tariq"},{"full_name":"Conway, Barbara R.","first_name":"Barbara R.","last_name":"Conway"},{"full_name":"Ghori, Muhammad Usman","first_name":"Muhammad Usman","last_name":"Ghori"}],"date_updated":"2023-08-09T10:16:10Z","publication_identifier":{"eissn":["2072-666X"]},"volume":13,"oa":1,"external_id":{"isi":["000758547200001"]},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","abstract":[{"lang":"eng","text":"Electrically tunable lenses (ETLs) are those with the ability to alter their optical power in response to an electric signal. This feature allows such systems to not only image the areas of interest but also obtain spatial depth perception (depth of field, DOF). The aim of the present study was to develop an ETL-based imaging system for quantitative surface analysis. Firstly, the system was calibrated to achieve high depth resolution, warranting the accurate measurement of the depth and to account for and correct any influences from external factors on the ETL. This was completed using the Tenengrad operator which effectively identified the plane of best focus as demonstrated by the linear relationship between the control current applied to the ETL and the height at which the optical system focuses. The system was then employed to measure amplitude, spatial, hybrid, and volume surface texture parameters of a model material (pharmaceutical dosage form) which were validated against the parameters obtained using a previously validated surface texture analysis technique, optical profilometry. There were no statistically significant differences between the surface texture parameters measured by the techniques, highlighting the potential application of ETL-based imaging systems as an easily adaptable and low-cost alternative surface texture analysis technique to conventional microscopy techniques"}],"keyword":["surface texture","electrically tunable lens","materials","hypromellose","surface topography","surface roughness","pharmaceutical tablet","variable focus imaging"],"file_date_updated":"2022-01-03T13:43:01Z","isi":1,"day":"01","citation":{"mla":"Nirwan, Jorabar Singh, et al. “Electrically Tunable Lens (ETL) - Based Variable Focus Imaging System for Parametric Surface Texture Analysis of Materials.” <i>Micromachines</i>, vol. 13, no. 1, 17, MDPI, 2022, doi:<a href=\"https://doi.org/10.3390/mi13010017\">10.3390/mi13010017</a>.","chicago":"Nirwan, Jorabar Singh, Shan Lou, Saqib Hussain, Muhammad Nauman, Tariq Hussain, Barbara R. Conway, and Muhammad Usman Ghori. “Electrically Tunable Lens (ETL) - Based Variable Focus Imaging System for Parametric Surface Texture Analysis of Materials.” <i>Micromachines</i>. MDPI, 2022. <a href=\"https://doi.org/10.3390/mi13010017\">https://doi.org/10.3390/mi13010017</a>.","ista":"Nirwan JS, Lou S, Hussain S, Nauman M, Hussain T, Conway BR, Ghori MU. 2022. Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. Micromachines. 13(1), 17.","apa":"Nirwan, J. S., Lou, S., Hussain, S., Nauman, M., Hussain, T., Conway, B. R., &#38; Ghori, M. U. (2022). Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. <i>Micromachines</i>. MDPI. <a href=\"https://doi.org/10.3390/mi13010017\">https://doi.org/10.3390/mi13010017</a>","ama":"Nirwan JS, Lou S, Hussain S, et al. Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. <i>Micromachines</i>. 2022;13(1). doi:<a href=\"https://doi.org/10.3390/mi13010017\">10.3390/mi13010017</a>","short":"J.S. Nirwan, S. Lou, S. Hussain, M. Nauman, T. Hussain, B.R. Conway, M.U. Ghori, Micromachines 13 (2022).","ieee":"J. S. Nirwan <i>et al.</i>, “Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials,” <i>Micromachines</i>, vol. 13, no. 1. MDPI, 2022."},"issue":"1","doi":"10.3390/mi13010017","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"The authors acknowledge the financial assistance provided by the University of Huddersfield.","article_number":"17","quality_controlled":"1","publication_status":"published","type":"journal_article","file":[{"content_type":"application/pdf","file_size":5370675,"success":1,"file_id":"10601","date_updated":"2022-01-03T13:43:01Z","file_name":"2021_Micromachines_Singh.pdf","access_level":"open_access","checksum":"5d062cae3f1acb251cacb21021724c4e","creator":"alisjak","relation":"main_file","date_created":"2022-01-03T13:43:01Z"}],"department":[{"_id":"KiMo"}],"has_accepted_license":"1","publisher":"MDPI","ddc":["620"],"publication":"Micromachines"},{"acknowledgement":"This project was supported by the US Department of Energy through award (No. DE-SC0018026). The work was performed in part at the Cornell NanoScale Facility, a member of the National Nanotechnology Coordinated Infrastructure (NNCI), which is supported by the National Science Foundation (No. NNCI-1542081) and in part at the Cornell Center for Materials Research with funding from the NSF MRSEC program (No. DMR-1719875). The authors thank Beth Rhodes for the technical assistance with inkjet printing, and E. Peretz and Q. Wen for the early exploratory experiments.","issue":"5","doi":"10.1007/s12274-021-4022-7","main_file_link":[{"url":"https://www.osti.gov/biblio/1837946","open_access":"1"}],"citation":{"short":"D. Balazs, N.D. Erkan, M. Quien, T. Hanrath, Nano Research 15 (2022) 4536–4543.","ieee":"D. Balazs, N. D. Erkan, M. Quien, and T. Hanrath, “Inkjet printing of epitaxially connected nanocrystal superlattices,” <i>Nano Research</i>, vol. 15, no. 5. Springer Nature, pp. 4536–4543, 2022.","ista":"Balazs D, Erkan ND, Quien M, Hanrath T. 2022. Inkjet printing of epitaxially connected nanocrystal superlattices. Nano Research. 15(5), 4536–4543.","chicago":"Balazs, Daniel, N. Deniz Erkan, Michelle Quien, and Tobias Hanrath. “Inkjet Printing of Epitaxially Connected Nanocrystal Superlattices.” <i>Nano Research</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s12274-021-4022-7\">https://doi.org/10.1007/s12274-021-4022-7</a>.","apa":"Balazs, D., Erkan, N. D., Quien, M., &#38; Hanrath, T. (2022). Inkjet printing of epitaxially connected nanocrystal superlattices. <i>Nano Research</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s12274-021-4022-7\">https://doi.org/10.1007/s12274-021-4022-7</a>","ama":"Balazs D, Erkan ND, Quien M, Hanrath T. Inkjet printing of epitaxially connected nanocrystal superlattices. <i>Nano Research</i>. 2022;15(5):4536–4543. doi:<a href=\"https://doi.org/10.1007/s12274-021-4022-7\">10.1007/s12274-021-4022-7</a>","mla":"Balazs, Daniel, et al. “Inkjet Printing of Epitaxially Connected Nanocrystal Superlattices.” <i>Nano Research</i>, vol. 15, no. 5, Springer Nature, 2022, pp. 4536–4543, doi:<a href=\"https://doi.org/10.1007/s12274-021-4022-7\">10.1007/s12274-021-4022-7</a>."},"day":"01","isi":1,"keyword":["interfacial assembly","colloidal nanocrystal","superlattice","inkjet printing"],"page":"4536–4543","publication":"Nano Research","publisher":"Springer Nature","department":[{"_id":"MaIb"}],"type":"journal_article","publication_status":"published","quality_controlled":"1","date_published":"2022-05-01T00:00:00Z","title":"Inkjet printing of epitaxially connected nanocrystal superlattices","month":"05","scopus_import":"1","intvolume":"        15","_id":"10587","year":"2022","language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"No","status":"public","abstract":[{"lang":"eng","text":"Access to a blossoming library of colloidal nanomaterials provides building blocks for complex assembled materials. The journey to bring these prospects to fruition stands to benefit from the application of advanced processing methods. Epitaxially connected nanocrystal (or quantum dot) superlattices present a captivating model system for mesocrystals with intriguing emergent properties. The conventional processing approach to creating these materials involves assembling and attaching the constituent nanocrystals at the interface between two immiscible fluids. Processing small liquid volumes of the colloidal nanocrystal solution involves several complexities arising from the concurrent spreading, evaporation, assembly, and attachment. The ability of inkjet printers to deliver small (typically picoliter) liquid volumes with precise positioning is attractive to advance fundamental insights into the processing science, and thereby potentially enable new routes to incorporate the epitaxially connected superlattices into technology platforms. In this study, we identified the processing window of opportunity, including nanocrystal ink formulation and printing approach to enable delivery of colloidal nanocrystals from an inkjet nozzle onto the surface of a sessile droplet of the immiscible subphase. We demonstrate how inkjet printing can be scaled-down to enable the fabrication of epitaxially connected superlattices on patterned sub-millimeter droplets. We anticipate that insights from this work will spur on future advances to enable more mechanistic insights into the assembly processes and new avenues to create high-fidelity superlattices."}],"oa_version":"Submitted Version","external_id":{"isi":["000735340300001"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","volume":15,"oa":1,"publication_identifier":{"issn":["1998-0124"],"eissn":["1998-0000"]},"date_updated":"2023-08-02T13:47:21Z","author":[{"id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E","first_name":"Daniel","last_name":"Balazs","orcid":"0000-0001-7597-043X","full_name":"Balazs, Daniel"},{"last_name":"Erkan","first_name":"N. Deniz","full_name":"Erkan, N. Deniz"},{"full_name":"Quien, Michelle","first_name":"Michelle","last_name":"Quien"},{"full_name":"Hanrath, Tobias","last_name":"Hanrath","first_name":"Tobias"}],"date_created":"2022-01-02T23:01:34Z"},{"status":"public","ec_funded":1,"article_processing_charge":"Yes (via OA deal)","article_type":"original","language":[{"iso":"eng"}],"_id":"10588","year":"2022","intvolume":"       384","month":"12","scopus_import":"1","title":"Sobolev-to-Lipschitz property on QCD- spaces and applications","date_published":"2022-12-01T00:00:00Z","date_created":"2022-01-02T23:01:35Z","author":[{"full_name":"Dello Schiavo, Lorenzo","orcid":"0000-0002-9881-6870","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","last_name":"Dello Schiavo","first_name":"Lorenzo"},{"full_name":"Suzuki, Kohei","first_name":"Kohei","last_name":"Suzuki"}],"project":[{"call_identifier":"H2020","_id":"256E75B8-B435-11E9-9278-68D0E5697425","name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117"},{"name":"Taming Complexity in Partial Differential Systems","grant_number":"F6504","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"date_updated":"2025-04-14T07:27:46Z","publication_identifier":{"issn":["0025-5831"],"eissn":["1432-1807"]},"oa":1,"volume":384,"external_id":{"isi":["000734150200001"],"arxiv":["2110.05137"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa_version":"Published Version","arxiv":1,"abstract":[{"text":"We prove the Sobolev-to-Lipschitz property for metric measure spaces satisfying the quasi curvature-dimension condition recently introduced in Milman (Commun Pure Appl Math, to appear). We provide several applications to properties of the corresponding heat semigroup. In particular, under the additional assumption of infinitesimal Hilbertianity, we show the Varadhan short-time asymptotics for the heat semigroup with respect to the distance, and prove the irreducibility of the heat semigroup. These results apply in particular to large classes of (ideal) sub-Riemannian manifolds.","lang":"eng"}],"page":"1815-1832","keyword":["quasi curvature-dimension condition","sub-riemannian geometry","Sobolev-to-Lipschitz property","Varadhan short-time asymptotics"],"file_date_updated":"2022-01-03T11:08:31Z","day":"01","isi":1,"citation":{"mla":"Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property on QCD- Spaces and Applications.” <i>Mathematische Annalen</i>, vol. 384, Springer Nature, 2022, pp. 1815–32, doi:<a href=\"https://doi.org/10.1007/s00208-021-02331-2\">10.1007/s00208-021-02331-2</a>.","ista":"Dello Schiavo L, Suzuki K. 2022. Sobolev-to-Lipschitz property on QCD- spaces and applications. Mathematische Annalen. 384, 1815–1832.","chicago":"Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property on QCD- Spaces and Applications.” <i>Mathematische Annalen</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00208-021-02331-2\">https://doi.org/10.1007/s00208-021-02331-2</a>.","apa":"Dello Schiavo, L., &#38; Suzuki, K. (2022). Sobolev-to-Lipschitz property on QCD- spaces and applications. <i>Mathematische Annalen</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00208-021-02331-2\">https://doi.org/10.1007/s00208-021-02331-2</a>","ama":"Dello Schiavo L, Suzuki K. Sobolev-to-Lipschitz property on QCD- spaces and applications. <i>Mathematische Annalen</i>. 2022;384:1815-1832. doi:<a href=\"https://doi.org/10.1007/s00208-021-02331-2\">10.1007/s00208-021-02331-2</a>","short":"L. Dello Schiavo, K. Suzuki, Mathematische Annalen 384 (2022) 1815–1832.","ieee":"L. Dello Schiavo and K. Suzuki, “Sobolev-to-Lipschitz property on QCD- spaces and applications,” <i>Mathematische Annalen</i>, vol. 384. Springer Nature, pp. 1815–1832, 2022."},"doi":"10.1007/s00208-021-02331-2","acknowledgement":"The authors are grateful to Dr. Bang-Xian Han for helpful discussions on the Sobolev-to-Lipschitz property on metric measure spaces, and to Professor Kazuhiro Kuwae, Professor Emanuel Milman, Dr. Giorgio Stefani, and Dr. Gioacchino Antonelli for reading a preliminary version of this work and for their valuable comments and suggestions. Finally, they wish to express their gratitude to two anonymous Reviewers whose suggestions improved the presentation of this work.\r\n\r\nL.D.S. gratefully acknowledges funding of his position by the Austrian Science Fund (FWF) grant F65, and by the European Research Council (ERC, grant No. 716117, awarded to Prof. Dr. Jan Maas).\r\n\r\nK.S. gratefully acknowledges funding by: the JSPS Overseas Research Fellowships, Grant Nr. 290142; World Premier International Research Center Initiative (WPI), MEXT, Japan; JSPS Grant-in-Aid for Scientific Research on Innovative Areas “Discrete Geometric Analysis for Materials Design”, Grant Number 17H06465; and the Alexander von Humboldt Stiftung, Humboldt-Forschungsstipendium.","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"quality_controlled":"1","publication_status":"published","type":"journal_article","file":[{"success":1,"file_id":"10596","content_type":"application/pdf","file_size":410090,"date_created":"2022-01-03T11:08:31Z","relation":"main_file","access_level":"open_access","creator":"alisjak","checksum":"2593abbf195e38efa93b6006b1e90eb1","date_updated":"2022-01-03T11:08:31Z","file_name":"2021_MathAnn_DelloSchiavo.pdf"}],"corr_author":"1","department":[{"_id":"JaMa"}],"has_accepted_license":"1","publisher":"Springer Nature","ddc":["510"],"publication":"Mathematische Annalen"},{"publication":"Nature Physics","publisher":"Springer Nature","corr_author":"1","department":[{"_id":"AnHi"}],"quality_controlled":"1","type":"journal_article","publication_status":"published","doi":"10.1038/s41567-021-01459-x","citation":{"ista":"Higginbotham AP. 2022. A secret source. Nature Physics. 18, 126.","chicago":"Higginbotham, Andrew P. “A Secret Source.” <i>Nature Physics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41567-021-01459-x\">https://doi.org/10.1038/s41567-021-01459-x</a>.","ama":"Higginbotham AP. A secret source. <i>Nature Physics</i>. 2022;18:126. doi:<a href=\"https://doi.org/10.1038/s41567-021-01459-x\">10.1038/s41567-021-01459-x</a>","apa":"Higginbotham, A. P. (2022). A secret source. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-021-01459-x\">https://doi.org/10.1038/s41567-021-01459-x</a>","mla":"Higginbotham, Andrew P. “A Secret Source.” <i>Nature Physics</i>, vol. 18, Springer Nature, 2022, p. 126, doi:<a href=\"https://doi.org/10.1038/s41567-021-01459-x\">10.1038/s41567-021-01459-x</a>.","short":"A.P. Higginbotham, Nature Physics 18 (2022) 126.","ieee":"A. P. Higginbotham, “A secret source,” <i>Nature Physics</i>, vol. 18. Springer Nature, p. 126, 2022."},"day":"01","isi":1,"keyword":["superconducting devices","superconducting properties and materials"],"page":"126","oa_version":"None","abstract":[{"text":"Superconducting devices ubiquitously have an excess of broken Cooper pairs, which can hamper their performance. It is widely believed that external radiation is responsible but a study now suggests there must be an additional, unknown source.","lang":"eng"}],"volume":18,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000733431000007"]},"date_updated":"2024-10-09T21:01:21Z","publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"author":[{"id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","first_name":"Andrew P","last_name":"Higginbotham","orcid":"0000-0003-2607-2363","full_name":"Higginbotham, Andrew P"}],"date_created":"2022-01-02T23:01:35Z","title":"A secret source","scopus_import":"1","month":"02","date_published":"2022-02-01T00:00:00Z","year":"2022","_id":"10589","intvolume":"        18","article_type":"letter_note","article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public"},{"department":[{"_id":"GradSch"},{"_id":"LaEr"}],"quality_controlled":"1","publication_status":"published","type":"journal_article","publication":"Journal of Mathematical Physics","publisher":"AIP Publishing","keyword":["mathematical physics","statistical and nonlinear physics"],"issue":"1","doi":"10.1063/5.0051632","acknowledgement":"J.H. acknowledges partial financial support from ERC Advanced Grant “RMTBeyond” No. 101020331.","article_number":"011901","day":"03","isi":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2012.15238","open_access":"1"}],"citation":{"short":"S.J. Henheik, S. Teufel, Journal of Mathematical Physics 63 (2022).","ieee":"S. J. Henheik and S. Teufel, “Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap,” <i>Journal of Mathematical Physics</i>, vol. 63, no. 1. AIP Publishing, 2022.","mla":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Uniform Gap.” <i>Journal of Mathematical Physics</i>, vol. 63, no. 1, 011901, AIP Publishing, 2022, doi:<a href=\"https://doi.org/10.1063/5.0051632\">10.1063/5.0051632</a>.","ista":"Henheik SJ, Teufel S. 2022. Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. Journal of Mathematical Physics. 63(1), 011901.","chicago":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Uniform Gap.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2022. <a href=\"https://doi.org/10.1063/5.0051632\">https://doi.org/10.1063/5.0051632</a>.","apa":"Henheik, S. J., &#38; Teufel, S. (2022). Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0051632\">https://doi.org/10.1063/5.0051632</a>","ama":"Henheik SJ, Teufel S. Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. <i>Journal of Mathematical Physics</i>. 2022;63(1). doi:<a href=\"https://doi.org/10.1063/5.0051632\">10.1063/5.0051632</a>"},"date_updated":"2025-04-14T07:57:17Z","publication_identifier":{"eissn":["1089-7658"],"issn":["0022-2488"]},"date_created":"2022-01-03T12:19:48Z","author":[{"first_name":"Sven Joscha","last_name":"Henheik","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","orcid":"0000-0003-1106-327X","full_name":"Henheik, Sven Joscha"},{"full_name":"Teufel, Stefan","last_name":"Teufel","first_name":"Stefan"}],"project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020"}],"oa_version":"Preprint","arxiv":1,"abstract":[{"lang":"eng","text":"We show that recent results on adiabatic theory for interacting gapped many-body systems on finite lattices remain valid in the thermodynamic limit. More precisely, we prove a generalized super-adiabatic theorem for the automorphism group describing the infinite volume dynamics on the quasi-local algebra of observables. The key assumption is the existence of a sequence of gapped finite volume Hamiltonians, which generates the same infinite volume dynamics in the thermodynamic limit. Our adiabatic theorem also holds for certain perturbations of gapped ground states that close the spectral gap (so it is also an adiabatic theorem for resonances and, in this sense, “generalized”), and it provides an adiabatic approximation to all orders in the adiabatic parameter (a property often called “super-adiabatic”). In addition to the existing results for finite lattices, we also perform a resummation of the adiabatic expansion and allow for observables that are not strictly local. Finally, as an application, we prove the validity of linear and higher order response theory for our class of perturbations for infinite systems. While we consider the result and its proof as new and interesting in itself, we also lay the foundation for the proof of an adiabatic theorem for systems with a gap only in the bulk, which will be presented in a follow-up article."}],"volume":63,"oa":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"arxiv":["2012.15238"],"isi":["000739446000009"]},"article_processing_charge":"No","article_type":"original","language":[{"iso":"eng"}],"status":"public","ec_funded":1,"month":"01","scopus_import":"1","title":"Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap","date_published":"2022-01-03T00:00:00Z","year":"2022","_id":"10600","intvolume":"        63"},{"year":"2022","_id":"10602","intvolume":"        59","scopus_import":"1","month":"10","title":"Index appearance record with preorders","date_published":"2022-10-01T00:00:00Z","status":"public","article_processing_charge":"Yes (via OA deal)","article_type":"original","language":[{"iso":"eng"}],"oa":1,"volume":59,"external_id":{"isi":["000735765500001"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa_version":"Published Version","abstract":[{"lang":"eng","text":"Transforming ω-automata into parity automata is traditionally done using appearance records. We present an efficient variant of this idea, tailored to Rabin automata, and several optimizations applicable to all appearance records. We compare the methods experimentally and show that our method produces significantly smaller automata than previous approaches."}],"date_created":"2022-01-06T12:37:27Z","author":[{"id":"44CEF464-F248-11E8-B48F-1D18A9856A87","last_name":"Kretinsky","first_name":"Jan","full_name":"Kretinsky, Jan","orcid":"0000-0002-8122-2881"},{"first_name":"Tobias","last_name":"Meggendorfer","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","orcid":"0000-0002-1712-2165","full_name":"Meggendorfer, Tobias"},{"full_name":"Waldmann, Clara","last_name":"Waldmann","first_name":"Clara"},{"full_name":"Weininger, Maximilian","last_name":"Weininger","first_name":"Maximilian"}],"project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"date_updated":"2025-04-15T06:53:08Z","publication_identifier":{"issn":["0001-5903"],"eissn":["1432-0525"]},"day":"01","isi":1,"citation":{"short":"J. Kretinsky, T. Meggendorfer, C. Waldmann, M. Weininger, Acta Informatica 59 (2022) 585–618.","ieee":"J. Kretinsky, T. Meggendorfer, C. Waldmann, and M. Weininger, “Index appearance record with preorders,” <i>Acta Informatica</i>, vol. 59. Springer Nature, pp. 585–618, 2022.","mla":"Kretinsky, Jan, et al. “Index Appearance Record with Preorders.” <i>Acta Informatica</i>, vol. 59, Springer Nature, 2022, pp. 585–618, doi:<a href=\"https://doi.org/10.1007/s00236-021-00412-y\">10.1007/s00236-021-00412-y</a>.","chicago":"Kretinsky, Jan, Tobias Meggendorfer, Clara Waldmann, and Maximilian Weininger. “Index Appearance Record with Preorders.” <i>Acta Informatica</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00236-021-00412-y\">https://doi.org/10.1007/s00236-021-00412-y</a>.","ista":"Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. 2022. Index appearance record with preorders. Acta Informatica. 59, 585–618.","ama":"Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. Index appearance record with preorders. <i>Acta Informatica</i>. 2022;59:585-618. doi:<a href=\"https://doi.org/10.1007/s00236-021-00412-y\">10.1007/s00236-021-00412-y</a>","apa":"Kretinsky, J., Meggendorfer, T., Waldmann, C., &#38; Weininger, M. (2022). Index appearance record with preorders. <i>Acta Informatica</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00236-021-00412-y\">https://doi.org/10.1007/s00236-021-00412-y</a>"},"doi":"10.1007/s00236-021-00412-y","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"This work is partially funded by the German Research Foundation (DFG) projects Verified Model Checkers (No. 317422601) and Statistical Unbounded Verification (No. 383882557), and the Alexander von Humboldt Foundation with funds from the German Federal Ministry of Education and Research. It is an extended version of [21], including all proofs together with further explanations and examples. Moreover, we provide a new, more efficient construction based on (total) preorders, unifying previous optimizations. Experiments are performed with a new, performant implementation, comparing our approach to the current state of the art.","page":"585-618","keyword":["computer networks and communications","information systems","software"],"file_date_updated":"2022-01-07T07:50:31Z","has_accepted_license":"1","publisher":"Springer Nature","publication":"Acta Informatica","ddc":["000"],"quality_controlled":"1","publication_status":"published","type":"journal_article","file":[{"relation":"main_file","date_created":"2022-01-07T07:50:31Z","date_updated":"2022-01-07T07:50:31Z","file_name":"2021_ActaInfor_Křetínský.pdf","checksum":"bf1c195b6aaf59e8530cf9e3a9d731f7","creator":"cchlebak","access_level":"open_access","file_id":"10603","success":1,"file_size":1066082,"content_type":"application/pdf"}],"corr_author":"1","department":[{"_id":"KrCh"}]},{"language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"No","status":"public","date_published":"2022-02-01T00:00:00Z","title":"Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control","month":"02","scopus_import":"1","intvolume":"         6","_id":"10604","year":"2022","publication_identifier":{"eissn":["2056-3744"]},"date_updated":"2025-06-11T13:45:56Z","author":[{"full_name":"Turelli, Michael","last_name":"Turelli","first_name":"Michael"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H","full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240"}],"date_created":"2022-01-09T09:45:17Z","abstract":[{"lang":"eng","text":"Maternally inherited Wolbachia transinfections are being introduced into natural mosquito populations to reduce the transmission of dengue, Zika, and other arboviruses. Wolbachia-induced cytoplasmic incompatibility provides a frequency-dependent reproductive advantage to infected females that can spread transinfections within and among populations. However, because transinfections generally reduce host fitness, they tend to spread within populations only after their frequency exceeds a critical threshold. This produces bistability with stable equilibrium frequencies at both 0 and 1, analogous to the bistability produced by underdominance between alleles or karyotypes and by population dynamics under Allee effects. Here, we analyze how stochastic frequency variation produced by finite population size can facilitate the local spread of variants with bistable dynamics into areas where invasion is unexpected from deterministic models. Our exemplar is the establishment of wMel Wolbachia in the Aedes aegypti population of Pyramid Estates (PE), a small community in far north Queensland, Australia. In 2011, wMel was stably introduced into Gordonvale, separated from PE by barriers to A. aegypti dispersal. After nearly 6 years during which wMel was observed only at low frequencies in PE, corresponding to an apparent equilibrium between immigration and selection, wMel rose to fixation by 2018. Using analytic approximations and statistical analyses, we demonstrate that the observed fixation of wMel at PE is consistent with both stochastic transition past an unstable threshold frequency and deterministic transformation produced by steady immigration at a rate just above the threshold required for deterministic invasion. The indeterminacy results from a delicate balance of parameters needed to produce the delayed transition observed. Our analyses suggest that once Wolbachia transinfections are established locally through systematic introductions, stochastic “threshold crossing” is likely to only minimally enhance spatial spread, providing a local ratchet that slightly—but systematically—aids area-wide transformation of disease-vector populations in heterogeneous landscapes."}],"oa_version":"Published Version","external_id":{"pmid":["35127140"],"isi":["000754412600008"]},"pmid":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"volume":6,"file_date_updated":"2022-07-29T06:59:10Z","keyword":["genetics","ecology","evolution","behavior and systematics"],"page":"92-105","acknowledgement":"We thank S. O'Neill, C. Simmons, and the World Mosquito Project for providing access to unpublished data. S. Ritchie provided valuable insights into Aedes aegypti biology and the literature describing A. aegypti populations near Cairns. We thank B. Cooper for help with the figures and D. Shropshire, S. O'Neill, S. Ritchie, A. Hoffmann, B. Cooper, and members of the Cooper lab for comments on an earlier draft. Comments from three reviewers greatly improved our presentation.","issue":"1","doi":"10.1002/evl3.270","citation":{"ieee":"M. Turelli and N. H. Barton, “Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control,” <i>Evolution Letters</i>, vol. 6, no. 1. Wiley, pp. 92–105, 2022.","short":"M. Turelli, N.H. Barton, Evolution Letters 6 (2022) 92–105.","mla":"Turelli, Michael, and Nicholas H. Barton. “Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics, and Disease Control.” <i>Evolution Letters</i>, vol. 6, no. 1, Wiley, 2022, pp. 92–105, doi:<a href=\"https://doi.org/10.1002/evl3.270\">10.1002/evl3.270</a>.","apa":"Turelli, M., &#38; Barton, N. H. (2022). Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. <i>Evolution Letters</i>. Wiley. <a href=\"https://doi.org/10.1002/evl3.270\">https://doi.org/10.1002/evl3.270</a>","ama":"Turelli M, Barton NH. Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. <i>Evolution Letters</i>. 2022;6(1):92-105. doi:<a href=\"https://doi.org/10.1002/evl3.270\">10.1002/evl3.270</a>","chicago":"Turelli, Michael, and Nicholas H Barton. “Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics, and Disease Control.” <i>Evolution Letters</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/evl3.270\">https://doi.org/10.1002/evl3.270</a>.","ista":"Turelli M, Barton NH. 2022. Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. Evolution Letters. 6(1), 92–105."},"day":"01","isi":1,"department":[{"_id":"NiBa"}],"file":[{"file_size":2435185,"content_type":"application/pdf","success":1,"file_id":"11689","file_name":"2022_EvolutionLetters_Turelli.pdf","date_updated":"2022-07-29T06:59:10Z","access_level":"open_access","checksum":"7e9a37e3b65b480cd7014a6a4a7e460a","creator":"dernst","relation":"main_file","date_created":"2022-07-29T06:59:10Z"}],"type":"journal_article","publication_status":"published","quality_controlled":"1","ddc":["570"],"publication":"Evolution Letters","publisher":"Wiley","related_material":{"record":[{"relation":"research_data","id":"11686","status":"public"}]},"has_accepted_license":"1"},{"page":"335-355","file_date_updated":"2024-05-22T11:10:10Z","day":"01","citation":{"short":"T. Weighill, T. Yamauchi, N. Zava, European Journal of Mathematics 8 (2022) 335–355.","ieee":"T. Weighill, T. Yamauchi, and N. Zava, “Coarse infinite-dimensionality of hyperspaces of finite subsets,” <i>European Journal of Mathematics</i>, vol. 8, no. 1. Springer Nature, pp. 335–355, 2022.","mla":"Weighill, Thomas, et al. “Coarse Infinite-Dimensionality of Hyperspaces of Finite Subsets.” <i>European Journal of Mathematics</i>, vol. 8, no. 1, Springer Nature, 2022, pp. 335–55, doi:<a href=\"https://doi.org/10.1007/s40879-021-00515-3\">10.1007/s40879-021-00515-3</a>.","ista":"Weighill T, Yamauchi T, Zava N. 2022. Coarse infinite-dimensionality of hyperspaces of finite subsets. European Journal of Mathematics. 8(1), 335–355.","chicago":"Weighill, Thomas, Takamitsu Yamauchi, and Nicolò Zava. “Coarse Infinite-Dimensionality of Hyperspaces of Finite Subsets.” <i>European Journal of Mathematics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s40879-021-00515-3\">https://doi.org/10.1007/s40879-021-00515-3</a>.","apa":"Weighill, T., Yamauchi, T., &#38; Zava, N. (2022). Coarse infinite-dimensionality of hyperspaces of finite subsets. <i>European Journal of Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40879-021-00515-3\">https://doi.org/10.1007/s40879-021-00515-3</a>","ama":"Weighill T, Yamauchi T, Zava N. Coarse infinite-dimensionality of hyperspaces of finite subsets. <i>European Journal of Mathematics</i>. 2022;8(1):335-355. doi:<a href=\"https://doi.org/10.1007/s40879-021-00515-3\">10.1007/s40879-021-00515-3</a>"},"doi":"10.1007/s40879-021-00515-3","issue":"1","acknowledgement":"We would like to thank the referees for their careful reading and the comments that improved our work. The third named author would like to thank the Division of Mathematics, Physics and Earth Sciences of the Graduate School of Science and Engineering of Ehime University and the second named author for hosting his visit in June 2018. Open access funding provided by Institute of Science and Technology (IST Austria).","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publication_status":"published","type":"journal_article","quality_controlled":"1","department":[{"_id":"HeEd"}],"file":[{"access_level":"open_access","creator":"kschuh","checksum":"ce35cbb2d8c889dc7750719972634ed4","file_name":"2022_EuJournalMath_Weighill.pdf","date_updated":"2024-05-22T11:10:10Z","date_created":"2024-05-22T11:10:10Z","relation":"main_file","file_size":371515,"content_type":"application/pdf","file_id":"17036","success":1}],"publisher":"Springer Nature","has_accepted_license":"1","ddc":["500"],"publication":"European Journal of Mathematics","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"Yes (via OA deal)","article_type":"original","intvolume":"         8","year":"2022","_id":"10608","date_published":"2022-03-01T00:00:00Z","scopus_import":"1","month":"03","title":"Coarse infinite-dimensionality of hyperspaces of finite subsets","date_created":"2022-01-09T23:01:27Z","author":[{"full_name":"Weighill, Thomas","last_name":"Weighill","first_name":"Thomas"},{"last_name":"Yamauchi","first_name":"Takamitsu","full_name":"Yamauchi, Takamitsu"},{"full_name":"Zava, Nicolò","orcid":"0000-0001-8686-1888","id":"c8b3499c-7a77-11eb-b046-aa368cbbf2ad","last_name":"Zava","first_name":"Nicolò"}],"publication_identifier":{"issn":["2199-675X"],"eissn":["2199-6768"]},"date_updated":"2024-05-22T11:10:22Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","volume":8,"oa":1,"abstract":[{"text":"We consider infinite-dimensional properties in coarse geometry for hyperspaces consisting of finite subsets of metric spaces with the Hausdorff metric. We see that several infinite-dimensional properties are preserved by taking the hyperspace of subsets with at most n points. On the other hand, we prove that, if a metric space contains a sequence of long intervals coarsely, then its hyperspace of finite subsets is not coarsely embeddable into any uniformly convex Banach space. As a corollary, the hyperspace of finite subsets of the real line is not coarsely embeddable into any uniformly convex Banach space. It is also shown that every (not necessarily bounded geometry) metric space with straight finite decomposition complexity has metric sparsification property.","lang":"eng"}],"oa_version":"Published Version"},{"date_updated":"2025-04-15T08:24:49Z","publication_identifier":{"issn":["0022-538X"],"eissn":["1098-5514"]},"date_created":"2022-01-18T10:04:18Z","author":[{"first_name":"Stefan","last_name":"Windhaber","full_name":"Windhaber, Stefan"},{"first_name":"Qilin","last_name":"Xin","full_name":"Xin, Qilin"},{"full_name":"Uckeley, Zina M.","last_name":"Uckeley","first_name":"Zina M."},{"first_name":"Jana","last_name":"Koch","full_name":"Koch, Jana"},{"orcid":"0000-0003-1756-6564","full_name":"Obr, Martin","id":"4741CA5A-F248-11E8-B48F-1D18A9856A87","first_name":"Martin","last_name":"Obr"},{"full_name":"Garnier, Céline","last_name":"Garnier","first_name":"Céline"},{"first_name":"Catherine","last_name":"Luengo-Guyonnot","full_name":"Luengo-Guyonnot, Catherine"},{"first_name":"Maëva","last_name":"Duboeuf","full_name":"Duboeuf, Maëva"},{"orcid":"0000-0003-4790-8078","full_name":"Schur, Florian KM","first_name":"Florian KM","last_name":"Schur","id":"48AD8942-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Lozach, Pierre-Yves","first_name":"Pierre-Yves","last_name":"Lozach"}],"project":[{"name":"Structural conservation and diversity in retroviral capsid","grant_number":"P31445","call_identifier":"FWF","_id":"26736D6A-B435-11E9-9278-68D0E5697425"}],"oa_version":"Published Version","abstract":[{"lang":"eng","text":"With more than 80 members worldwide, the Orthobunyavirus genus in the Peribunyaviridae family is a large genus of enveloped RNA viruses, many of which are emerging pathogens in humans and livestock. How orthobunyaviruses (OBVs) penetrate and infect mammalian host cells remains poorly characterized. Here, we investigated the entry mechanisms of the OBV Germiston (GERV). Viral particles were visualized by cryo-electron microscopy and appeared roughly spherical with an average diameter of 98 nm. Labeling of the virus with fluorescent dyes did not adversely affect its infectivity and allowed the monitoring of single particles in fixed and live cells. Using this approach, we found that endocytic internalization of bound viruses was asynchronous and occurred within 30-40 min. The virus entered Rab5a+ early endosomes and, subsequently, late endosomal vacuoles containing Rab7a but not LAMP-1. Infectious entry did not require proteolytic cleavage, and endosomal acidification was sufficient and necessary for viral fusion. Acid-activated penetration began 15-25 min after initiation of virus internalization and relied on maturation of early endosomes to late endosomes. The optimal pH for viral membrane fusion was slightly below 6.0, and penetration was hampered when the potassium influx was abolished. Overall, our study provides real-time visualization of GERV entry into host cells and demonstrates the importance of late endosomal maturation in facilitating OBV penetration."}],"volume":96,"oa":1,"pmid":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000779305000033"],"pmid":["35019710"]},"article_processing_charge":"No","article_type":"original","language":[{"iso":"eng"}],"status":"public","scopus_import":"1","month":"03","title":"The Orthobunyavirus Germiston enters host cells from late endosomes","date_published":"2022-03-01T00:00:00Z","_id":"10639","year":"2022","intvolume":"        96","department":[{"_id":"FlSc"}],"quality_controlled":"1","publication_status":"published","type":"journal_article","publication":"Journal of Virology","publisher":"American Society for Microbiology","keyword":["virology","insect science","immunology","microbiology"],"issue":"5","acknowledged_ssus":[{"_id":"EM-Fac"}],"doi":"10.1128/jvi.02146-21","acknowledgement":"This work  was  supported  by  INRAE  starter  funds, Project IDEXLYON  (University  of  Lyon) within  the  Programme  Investissements  d’Avenir  (ANR-16-IDEX-0005),  and  FINOVIAO14 (Fondation  pour  l’Université  de  Lyon),  all  to  P.Y.L.  This  work  was  also  supported  by CellNetworks  Research  Group  funds  and  Deutsche  Forschungsgemeinschaft  (DFG)  funding (grant  numbers  LO-2338/1-1  and  LO-2338/3-1)  awarded  to  P.Y.L., Austrian  Science  Fund (FWF)  grant  P31445  to  F.K.M.S., a  Chinese  Scholarship  Council (CSC;no.  201904910701) fellowship  to   Q.X.,  and  a  ministére  de  l’enseignement  supérieur,  de  la  recherche  et  de l’innovation (MESRI) doctoral thesis grant to M.D.","article_number":"e02146-21","day":"01","isi":1,"citation":{"ieee":"S. Windhaber <i>et al.</i>, “The Orthobunyavirus Germiston enters host cells from late endosomes,” <i>Journal of Virology</i>, vol. 96, no. 5. American Society for Microbiology, 2022.","short":"S. Windhaber, Q. Xin, Z.M. Uckeley, J. Koch, M. Obr, C. Garnier, C. Luengo-Guyonnot, M. Duboeuf, F.K. Schur, P.-Y. Lozach, Journal of Virology 96 (2022).","apa":"Windhaber, S., Xin, Q., Uckeley, Z. M., Koch, J., Obr, M., Garnier, C., … Lozach, P.-Y. (2022). The Orthobunyavirus Germiston enters host cells from late endosomes. <i>Journal of Virology</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/jvi.02146-21\">https://doi.org/10.1128/jvi.02146-21</a>","ama":"Windhaber S, Xin Q, Uckeley ZM, et al. The Orthobunyavirus Germiston enters host cells from late endosomes. <i>Journal of Virology</i>. 2022;96(5). doi:<a href=\"https://doi.org/10.1128/jvi.02146-21\">10.1128/jvi.02146-21</a>","chicago":"Windhaber, Stefan, Qilin Xin, Zina M. Uckeley, Jana Koch, Martin Obr, Céline Garnier, Catherine Luengo-Guyonnot, Maëva Duboeuf, Florian KM Schur, and Pierre-Yves Lozach. “The Orthobunyavirus Germiston Enters Host Cells from Late Endosomes.” <i>Journal of Virology</i>. American Society for Microbiology, 2022. <a href=\"https://doi.org/10.1128/jvi.02146-21\">https://doi.org/10.1128/jvi.02146-21</a>.","ista":"Windhaber S, Xin Q, Uckeley ZM, Koch J, Obr M, Garnier C, Luengo-Guyonnot C, Duboeuf M, Schur FK, Lozach P-Y. 2022. The Orthobunyavirus Germiston enters host cells from late endosomes. Journal of Virology. 96(5), e02146-21.","mla":"Windhaber, Stefan, et al. “The Orthobunyavirus Germiston Enters Host Cells from Late Endosomes.” <i>Journal of Virology</i>, vol. 96, no. 5, e02146-21, American Society for Microbiology, 2022, doi:<a href=\"https://doi.org/10.1128/jvi.02146-21\">10.1128/jvi.02146-21</a>."},"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8906410"}]},{"department":[{"_id":"GradSch"},{"_id":"LaEr"}],"file":[{"relation":"main_file","date_created":"2022-01-19T09:27:43Z","file_name":"2022_ForumMathSigma_Henheik.pdf","date_updated":"2022-01-19T09:27:43Z","access_level":"open_access","creator":"cchlebak","checksum":"87592a755adcef22ea590a99dc728dd3","success":1,"file_id":"10646","file_size":705323,"content_type":"application/pdf"}],"corr_author":"1","type":"journal_article","publication_status":"published","quality_controlled":"1","ddc":["510"],"publication":"Forum of Mathematics, Sigma","publisher":"Cambridge University Press","has_accepted_license":"1","file_date_updated":"2022-01-19T09:27:43Z","keyword":["computational mathematics","discrete mathematics and combinatorics","geometry and topology","mathematical physics","statistics and probability","algebra and number theory","theoretical computer science","analysis"],"article_number":"e4","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"J.H. acknowledges partial financial support by the ERC Advanced Grant ‘RMTBeyond’ No. 101020331. Support for publication costs from the Deutsche Forschungsgemeinschaft and the Open Access Publishing Fund of the University of Tübingen is gratefully acknowledged.","doi":"10.1017/fms.2021.80","citation":{"ieee":"S. J. Henheik and S. Teufel, “Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk,” <i>Forum of Mathematics, Sigma</i>, vol. 10. Cambridge University Press, 2022.","short":"S.J. Henheik, S. Teufel, Forum of Mathematics, Sigma 10 (2022).","ama":"Henheik SJ, Teufel S. Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk. <i>Forum of Mathematics, Sigma</i>. 2022;10. doi:<a href=\"https://doi.org/10.1017/fms.2021.80\">10.1017/fms.2021.80</a>","apa":"Henheik, S. J., &#38; Teufel, S. (2022). Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk. <i>Forum of Mathematics, Sigma</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/fms.2021.80\">https://doi.org/10.1017/fms.2021.80</a>","chicago":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Gap in the Bulk.” <i>Forum of Mathematics, Sigma</i>. Cambridge University Press, 2022. <a href=\"https://doi.org/10.1017/fms.2021.80\">https://doi.org/10.1017/fms.2021.80</a>.","ista":"Henheik SJ, Teufel S. 2022. Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk. Forum of Mathematics, Sigma. 10, e4.","mla":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Gap in the Bulk.” <i>Forum of Mathematics, Sigma</i>, vol. 10, e4, Cambridge University Press, 2022, doi:<a href=\"https://doi.org/10.1017/fms.2021.80\">10.1017/fms.2021.80</a>."},"day":"18","isi":1,"publication_identifier":{"eissn":["2050-5094"]},"date_updated":"2025-04-14T07:57:17Z","project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020","grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"author":[{"id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","first_name":"Sven Joscha","last_name":"Henheik","orcid":"0000-0003-1106-327X","full_name":"Henheik, Sven Joscha"},{"first_name":"Stefan","last_name":"Teufel","full_name":"Teufel, Stefan"}],"date_created":"2022-01-18T16:18:51Z","abstract":[{"text":"We prove a generalised super-adiabatic theorem for extended fermionic systems assuming a spectral gap only in the bulk. More precisely, we assume that the infinite system has a unique ground state and that the corresponding Gelfand–Naimark–Segal Hamiltonian has a spectral gap above its eigenvalue zero. Moreover, we show that a similar adiabatic theorem also holds in the bulk of finite systems up to errors that vanish faster than any inverse power of the system size, although the corresponding finite-volume Hamiltonians need not have a spectral gap.\r\n\r\n","lang":"eng"}],"oa_version":"Published Version","arxiv":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000743615000001"],"arxiv":["2012.15239"]},"oa":1,"volume":10,"language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"Yes","ec_funded":1,"status":"public","date_published":"2022-01-18T00:00:00Z","title":"Adiabatic theorem in the thermodynamic limit: Systems with a gap in the bulk","month":"01","scopus_import":"1","intvolume":"        10","_id":"10643","year":"2022"},{"status":"public","language":[{"iso":"eng"}],"article_processing_charge":"Yes (via OA deal)","article_type":"original","intvolume":"         4","year":"2022","_id":"10652","date_published":"2022-01-10T00:00:00Z","month":"01","scopus_import":"1","title":"Constraints on probing quantum coherence to infer gravitational entanglement","date_created":"2022-01-23T23:01:27Z","author":[{"full_name":"Hosten, Onur","orcid":"0000-0002-2031-204X","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87","last_name":"Hosten","first_name":"Onur"}],"publication_identifier":{"issn":["2643-1564"]},"date_updated":"2024-10-09T21:01:26Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"volume":4,"abstract":[{"text":"Finding a feasible scheme for testing the quantum mechanical nature of the gravitational interaction has been attracting an increasing level of attention. Gravity mediated entanglement generation so far appears to be the key ingredient for a potential experiment. In a recent proposal [D. Carney et al., PRX Quantum 2, 030330 (2021)] combining an atom interferometer with a low-frequency mechanical oscillator, a coherence revival test is proposed for verifying this entanglement generation. With measurements performed only on the atoms, this protocol bypasses the need for correlation measurements. Here, we explore formulations of such a protocol, and specifically find that in the envisioned regime of operation with high thermal excitation, semiclassical models, where there is no concept of entanglement, also give the same experimental signatures. We elucidate in a fully quantum mechanical calculation that entanglement is not the source of the revivals in the relevant parameter regime. We argue that, in its current form, the suggested test is only relevant if the oscillator is nearly in a pure quantum state, and in this regime the effects are too small to be measurable. We further discuss potential open ends. The results highlight the importance and subtleties of explicitly considering how the quantum case differs from the classical expectations when testing for the quantum mechanical nature of a physical system.","lang":"eng"}],"oa_version":"Published Version","file_date_updated":"2022-01-24T11:12:44Z","day":"10","citation":{"mla":"Hosten, Onur. “Constraints on Probing Quantum Coherence to Infer Gravitational Entanglement.” <i>Physical Review Research</i>, vol. 4, no. 1, 013023, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.4.013023\">10.1103/PhysRevResearch.4.013023</a>.","ista":"Hosten O. 2022. Constraints on probing quantum coherence to infer gravitational entanglement. Physical Review Research. 4(1), 013023.","chicago":"Hosten, Onur. “Constraints on Probing Quantum Coherence to Infer Gravitational Entanglement.” <i>Physical Review Research</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/PhysRevResearch.4.013023\">https://doi.org/10.1103/PhysRevResearch.4.013023</a>.","apa":"Hosten, O. (2022). Constraints on probing quantum coherence to infer gravitational entanglement. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.4.013023\">https://doi.org/10.1103/PhysRevResearch.4.013023</a>","ama":"Hosten O. Constraints on probing quantum coherence to infer gravitational entanglement. <i>Physical Review Research</i>. 2022;4(1). doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.4.013023\">10.1103/PhysRevResearch.4.013023</a>","short":"O. Hosten, Physical Review Research 4 (2022).","ieee":"O. Hosten, “Constraints on probing quantum coherence to infer gravitational entanglement,” <i>Physical Review Research</i>, vol. 4, no. 1. American Physical Society, 2022."},"article_number":"013023","issue":"1","doi":"10.1103/PhysRevResearch.4.013023","acknowledgement":"O.H. is supported by Institute of Science and Technology Austria. The author thanks Jess Riedel for discussions.","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publication_status":"published","type":"journal_article","quality_controlled":"1","department":[{"_id":"OnHo"}],"corr_author":"1","file":[{"success":1,"file_id":"10660","file_size":236329,"content_type":"application/pdf","date_created":"2022-01-24T11:12:44Z","relation":"main_file","access_level":"open_access","checksum":"7254d267a0633ca5d63131d345e58686","creator":"cchlebak","file_name":"2022_PhysRevResearch_Hosten.pdf","date_updated":"2022-01-24T11:12:44Z"}],"publisher":"American Physical Society","has_accepted_license":"1","ddc":["530"],"publication":"Physical Review Research"},{"file_date_updated":"2022-01-24T12:14:41Z","article_number":"e2021GL095184","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"The authors gratefully acknowledge funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041), and from the PhD fellowship of Ecole Normale Supérieure de Paris-Saclay. Two supplementary movies are also provided showing the angle detection method and the squall line of the Usfc = 10 m s−1 simulation.","issue":"1","doi":"10.1029/2021GL095184","citation":{"mla":"Abramian, Sophie, et al. “Shear-Convection Interactions and Orientation of Tropical Squall Lines.” <i>Geophysical Research Letters</i>, vol. 49, no. 1, e2021GL095184, Wiley, 2022, doi:<a href=\"https://doi.org/10.1029/2021GL095184\">10.1029/2021GL095184</a>.","chicago":"Abramian, Sophie, Caroline J Muller, and Camille Risi. “Shear-Convection Interactions and Orientation of Tropical Squall Lines.” <i>Geophysical Research Letters</i>. Wiley, 2022. <a href=\"https://doi.org/10.1029/2021GL095184\">https://doi.org/10.1029/2021GL095184</a>.","ista":"Abramian S, Muller CJ, Risi C. 2022. Shear-convection interactions and orientation of tropical squall lines. Geophysical Research Letters. 49(1), e2021GL095184.","apa":"Abramian, S., Muller, C. J., &#38; Risi, C. (2022). Shear-convection interactions and orientation of tropical squall lines. <i>Geophysical Research Letters</i>. Wiley. <a href=\"https://doi.org/10.1029/2021GL095184\">https://doi.org/10.1029/2021GL095184</a>","ama":"Abramian S, Muller CJ, Risi C. Shear-convection interactions and orientation of tropical squall lines. <i>Geophysical Research Letters</i>. 2022;49(1). doi:<a href=\"https://doi.org/10.1029/2021GL095184\">10.1029/2021GL095184</a>","short":"S. Abramian, C.J. Muller, C. Risi, Geophysical Research Letters 49 (2022).","ieee":"S. Abramian, C. J. Muller, and C. Risi, “Shear-convection interactions and orientation of tropical squall lines,” <i>Geophysical Research Letters</i>, vol. 49, no. 1. Wiley, 2022."},"isi":1,"day":"16","department":[{"_id":"CaMu"}],"file":[{"file_id":"10662","success":1,"content_type":"application/pdf","file_size":1117408,"relation":"main_file","date_created":"2022-01-24T12:14:41Z","file_name":"2022_GeophysResearchLet_Abramian.pdf","date_updated":"2022-01-24T12:14:41Z","access_level":"open_access","creator":"cchlebak","checksum":"08f88b57b8e409b42e382452cd5f297b"}],"type":"journal_article","publication_status":"published","quality_controlled":"1","ddc":["550"],"publication":"Geophysical Research Letters","publisher":"Wiley","related_material":{"link":[{"url":"https://doi.org/10.1002/essoar.10507697.1","relation":"earlier_version"}]},"has_accepted_license":"1","language":[{"iso":"eng"}],"article_type":"original","article_processing_charge":"No","ec_funded":1,"status":"public","date_published":"2022-01-16T00:00:00Z","title":"Shear-convection interactions and orientation of tropical squall lines","month":"01","scopus_import":"1","intvolume":"        49","year":"2022","_id":"10653","publication_identifier":{"issn":["0094-8276"],"eissn":["1944-8007"]},"date_updated":"2025-04-14T07:58:00Z","project":[{"grant_number":"805041","name":"Organization of CLoUdS, and implications of Tropical  cyclones and for the Energetics of the tropics, in current and waRming climate","_id":"629205d8-2b32-11ec-9570-e1356ff73576","call_identifier":"H2020"}],"author":[{"full_name":"Abramian, Sophie","last_name":"Abramian","first_name":"Sophie"},{"full_name":"Muller, Caroline J","orcid":"0000-0001-5836-5350","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller","first_name":"Caroline J"},{"full_name":"Risi, Camille","last_name":"Risi","first_name":"Camille"}],"date_created":"2022-01-23T23:01:27Z","abstract":[{"lang":"eng","text":"Squall lines are known to be the consequence of the interaction of low-level shear with cold pools associated with convective downdrafts. Also, as the magnitude of the shear increases beyond a critical shear, squall lines tend to orient themselves. The existing literature suggests that this orientation reduces incoming wind shear to the squall line, and maintains equilibrium between wind shear and cold pool spreading. Although this theory is widely accepted, very few quantitative studies have been conducted on supercritical regime especially. Here, we test this hypothesis with tropical squall lines obtained by imposing a vertical wind shear in cloud resolving simulations in radiative convective equilibrium. In the sub-critical regime, squall lines are perpendicular to the shear. In the super-critical regime, their orientation maintain the equilibrium, supporting existing theories. We also find that as shear increases, cold pools become more intense. However, this intensification has little impact on squall line orientation."}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"external_id":{"pmid":["35865077"],"isi":["000743989800040"]},"oa":1,"volume":49},{"ec_funded":1,"status":"public","article_type":"original","article_processing_charge":"No","language":[{"iso":"eng"}],"year":"2022","_id":"10654","intvolume":"       128","title":"Phase transition to turbulence in spatially extended shear flows","scopus_import":"1","month":"01","date_published":"2022-01-05T00:00:00Z","author":[{"full_name":"Klotz, Lukasz","orcid":"0000-0003-1740-7635","last_name":"Klotz","first_name":"Lukasz","id":"2C9AF1C2-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Lemoult, Grégoire M","id":"4787FE80-F248-11E8-B48F-1D18A9856A87","first_name":"Grégoire M","last_name":"Lemoult"},{"full_name":"Avila, Kerstin","first_name":"Kerstin","last_name":"Avila"},{"id":"3A374330-F248-11E8-B48F-1D18A9856A87","first_name":"Björn","last_name":"Hof","orcid":"0000-0003-2057-2754","full_name":"Hof, Björn"}],"date_created":"2022-01-23T23:01:28Z","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"},{"_id":"25152F3A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Decoding the complexity of turbulence at its origin","grant_number":"306589"},{"_id":"238598C6-32DE-11EA-91FC-C7463DDC885E","grant_number":"662960","name":"Revisiting the Turbulence Problem Using Statistical Mechanics"}],"date_updated":"2024-10-22T11:08:41Z","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"volume":128,"oa":1,"external_id":{"isi":["000748271700010"],"pmid":["35061458"],"arxiv":["2111.14894"]},"pmid":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","arxiv":1,"oa_version":"Preprint","abstract":[{"lang":"eng","text":"Directed percolation (DP) has recently emerged as a possible solution to the century old puzzle surrounding the transition to turbulence. Multiple model studies reported DP exponents, however, experimental evidence is limited since the largest possible observation times are orders of magnitude shorter than the flows’ characteristic timescales. An exception is cylindrical Couette flow where the limit is not temporal, but rather the realizable system size. We present experiments in a Couette setup of unprecedented azimuthal and axial aspect ratios. Approaching the critical point to within less than 0.1% we determine five critical exponents, all of which are in excellent agreement with the 2+1D DP universality class. The complex dynamics encountered at \r\nthe onset of turbulence can hence be fully rationalized within the framework of statistical mechanics."}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2111.14894"}],"citation":{"chicago":"Klotz, Lukasz, Grégoire M Lemoult, Kerstin Avila, and Björn Hof. “Phase Transition to Turbulence in Spatially Extended Shear Flows.” <i>Physical Review Letters</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/PhysRevLett.128.014502\">https://doi.org/10.1103/PhysRevLett.128.014502</a>.","ista":"Klotz L, Lemoult GM, Avila K, Hof B. 2022. Phase transition to turbulence in spatially extended shear flows. Physical Review Letters. 128(1), 014502.","apa":"Klotz, L., Lemoult, G. M., Avila, K., &#38; Hof, B. (2022). Phase transition to turbulence in spatially extended shear flows. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.128.014502\">https://doi.org/10.1103/PhysRevLett.128.014502</a>","ama":"Klotz L, Lemoult GM, Avila K, Hof B. Phase transition to turbulence in spatially extended shear flows. <i>Physical Review Letters</i>. 2022;128(1). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.128.014502\">10.1103/PhysRevLett.128.014502</a>","mla":"Klotz, Lukasz, et al. “Phase Transition to Turbulence in Spatially Extended Shear Flows.” <i>Physical Review Letters</i>, vol. 128, no. 1, 014502, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.128.014502\">10.1103/PhysRevLett.128.014502</a>.","short":"L. Klotz, G.M. Lemoult, K. Avila, B. Hof, Physical Review Letters 128 (2022).","ieee":"L. Klotz, G. M. Lemoult, K. Avila, and B. Hof, “Phase transition to turbulence in spatially extended shear flows,” <i>Physical Review Letters</i>, vol. 128, no. 1. American Physical Society, 2022."},"day":"05","isi":1,"acknowledgement":"We thank T.Menner, T.Asenov, P. Maier and the Miba machine shop of IST Austria for their valuable support in all technical aspects. We thank Marc Avila for comments on the manuscript. This work was supported by a grant from the Simons Foundation (662960, B.H.). We acknowledge the European Research Council under the European Union’s Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement 306589 for financial support. K.A.\r\nacknowledges funding from the Central Research Development Fund of the University of Bremen, grant number ZF04B /2019/FB04 Avila Kerstin (”Independent Project for Postdocs”). L.K. was supported by the European Union’s Horizon 2020 Research and innovation programme under the Marie Sklodowska-Curie grant agreement  No. 754411.\r\n","acknowledged_ssus":[{"_id":"M-Shop"}],"doi":"10.1103/PhysRevLett.128.014502","issue":"1","article_number":"014502","quality_controlled":"1","type":"journal_article","publication_status":"published","corr_author":"1","department":[{"_id":"BjHo"}],"publisher":"American Physical Society","publication":"Physical Review Letters"}]