[{"article_number":"2203.16701","citation":{"apa":"Bombari, S., Achille, A., Wang, Z., Wang, Y.-X., Xie, Y., Singh, K. Y., … Soatto, S. (n.d.). Towards differential relational privacy and its use in question answering. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.2203.16701\">https://doi.org/10.48550/arXiv.2203.16701</a>","chicago":"Bombari, Simone, Alessandro Achille, Zijian Wang, Yu-Xiang Wang, Yusheng Xie, Kunwar Yashraj Singh, Srikar Appalaraju, Vijay Mahadevan, and Stefano Soatto. “Towards Differential Relational Privacy and Its Use in Question Answering.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.2203.16701\">https://doi.org/10.48550/arXiv.2203.16701</a>.","ama":"Bombari S, Achille A, Wang Z, et al. Towards differential relational privacy and its use in question answering. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.2203.16701\">10.48550/arXiv.2203.16701</a>","ieee":"S. Bombari <i>et al.</i>, “Towards differential relational privacy and its use in question answering,” <i>arXiv</i>. .","ista":"Bombari S, Achille A, Wang Z, Wang Y-X, Xie Y, Singh KY, Appalaraju S, Mahadevan V, Soatto S. Towards differential relational privacy and its use in question answering. arXiv, 2203.16701.","short":"S. Bombari, A. Achille, Z. Wang, Y.-X. Wang, Y. Xie, K.Y. Singh, S. Appalaraju, V. Mahadevan, S. Soatto, ArXiv (n.d.).","mla":"Bombari, Simone, et al. “Towards Differential Relational Privacy and Its Use in Question Answering.” <i>ArXiv</i>, 2203.16701, doi:<a href=\"https://doi.org/10.48550/arXiv.2203.16701\">10.48550/arXiv.2203.16701</a>."},"language":[{"iso":"eng"}],"_id":"12860","day":"30","arxiv":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"03","title":"Towards differential relational privacy and its use in question answering","external_id":{"arxiv":["2203.16701"]},"publication":"arXiv","status":"public","doi":"10.48550/arXiv.2203.16701","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2203.16701"}],"date_created":"2023-04-23T16:11:48Z","abstract":[{"lang":"eng","text":"Memorization of the relation between entities in a dataset can lead to privacy issues when using a trained model for question answering. We introduce Relational Memorization (RM) to understand, quantify and control this phenomenon. While bounding general memorization can have detrimental effects on the performance of a trained model, bounding RM does not prevent effective learning. The difference is most pronounced when the data distribution is long-tailed, with many queries having only few training examples: Impeding general memorization prevents effective learning, while impeding only relational memorization still allows learning general properties of the underlying concepts. We formalize the notion of Relational Privacy (RP) and, inspired by Differential Privacy (DP), we provide a possible definition of Differential Relational Privacy (DrP). These notions can be used to describe and compute bounds on the amount of RM in a trained model. We illustrate Relational Privacy concepts in experiments with large-scale models for Question Answering."}],"publication_status":"submitted","oa_version":"Preprint","type":"preprint","article_processing_charge":"No","author":[{"id":"ca726dda-de17-11ea-bc14-f9da834f63aa","first_name":"Simone","full_name":"Bombari, Simone","last_name":"Bombari"},{"full_name":"Achille, Alessandro","last_name":"Achille","first_name":"Alessandro"},{"last_name":"Wang","full_name":"Wang, Zijian","first_name":"Zijian"},{"first_name":"Yu-Xiang","full_name":"Wang, Yu-Xiang","last_name":"Wang"},{"last_name":"Xie","full_name":"Xie, Yusheng","first_name":"Yusheng"},{"first_name":"Kunwar Yashraj","full_name":"Singh, Kunwar Yashraj","last_name":"Singh"},{"first_name":"Srikar","last_name":"Appalaraju","full_name":"Appalaraju, Srikar"},{"last_name":"Mahadevan","full_name":"Mahadevan, Vijay","first_name":"Vijay"},{"full_name":"Soatto, Stefano","last_name":"Soatto","first_name":"Stefano"}],"oa":1,"date_updated":"2023-04-25T07:34:49Z","date_published":"2022-03-30T00:00:00Z","department":[{"_id":"GradSch"},{"_id":"MaMo"}],"year":"2022"},{"related_material":{"record":[{"id":"11733","status":"public","relation":"used_in_publication"}]},"month":"09","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Improving genome-wide association discovery and genomic prediction accuracy in biobank data","_id":"13064","day":"02","corr_author":"1","license":"https://creativecommons.org/publicdomain/zero/1.0/","publisher":"Dryad","ddc":["570"],"citation":{"ama":"Orliac E, Trejo Banos D, Ojavee S, et al. Improving genome-wide association discovery and genomic prediction accuracy in biobank data. 2022. doi:<a href=\"https://doi.org/10.5061/DRYAD.GTHT76HMZ\">10.5061/DRYAD.GTHT76HMZ</a>","apa":"Orliac, E., Trejo Banos, D., Ojavee, S., Läll, K., Mägi, R., Visscher, P., &#38; Robinson, M. R. (2022). Improving genome-wide association discovery and genomic prediction accuracy in biobank data. Dryad. <a href=\"https://doi.org/10.5061/DRYAD.GTHT76HMZ\">https://doi.org/10.5061/DRYAD.GTHT76HMZ</a>","chicago":"Orliac, Etienne, Daniel Trejo Banos, Sven Ojavee, Kristi Läll, Reedik Mägi, Peter Visscher, and Matthew Richard Robinson. “Improving Genome-Wide Association Discovery and Genomic Prediction Accuracy in Biobank Data.” Dryad, 2022. <a href=\"https://doi.org/10.5061/DRYAD.GTHT76HMZ\">https://doi.org/10.5061/DRYAD.GTHT76HMZ</a>.","ieee":"E. Orliac <i>et al.</i>, “Improving genome-wide association discovery and genomic prediction accuracy in biobank data.” Dryad, 2022.","ista":"Orliac E, Trejo Banos D, Ojavee S, Läll K, Mägi R, Visscher P, Robinson MR. 2022. Improving genome-wide association discovery and genomic prediction accuracy in biobank data, Dryad, <a href=\"https://doi.org/10.5061/DRYAD.GTHT76HMZ\">10.5061/DRYAD.GTHT76HMZ</a>.","short":"E. Orliac, D. Trejo Banos, S. Ojavee, K. Läll, R. Mägi, P. Visscher, M.R. Robinson, (2022).","mla":"Orliac, Etienne, et al. <i>Improving Genome-Wide Association Discovery and Genomic Prediction Accuracy in Biobank Data</i>. Dryad, 2022, doi:<a href=\"https://doi.org/10.5061/DRYAD.GTHT76HMZ\">10.5061/DRYAD.GTHT76HMZ</a>."},"date_updated":"2025-06-12T06:22:36Z","date_published":"2022-09-02T00:00:00Z","department":[{"_id":"MaRo"}],"year":"2022","tmp":{"image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)"},"author":[{"last_name":"Orliac","full_name":"Orliac, Etienne","first_name":"Etienne"},{"last_name":"Trejo Banos","full_name":"Trejo Banos, Daniel","first_name":"Daniel"},{"last_name":"Ojavee","full_name":"Ojavee, Sven","first_name":"Sven"},{"full_name":"Läll, Kristi","last_name":"Läll","first_name":"Kristi"},{"first_name":"Reedik","last_name":"Mägi","full_name":"Mägi, Reedik"},{"first_name":"Peter","last_name":"Visscher","full_name":"Visscher, Peter"},{"first_name":"Matthew Richard","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","orcid":"0000-0001-8982-8813","full_name":"Robinson, Matthew Richard","last_name":"Robinson"}],"article_processing_charge":"No","oa":1,"doi":"10.5061/DRYAD.GTHT76HMZ","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.gtht76hmz"}],"date_created":"2023-05-23T16:28:13Z","abstract":[{"text":"Genetically informed, deep-phenotyped biobanks are an important research resource and it is imperative that the most powerful, versatile, and efficient analysis approaches are used. Here, we apply our recently developed Bayesian grouped mixture of regressions model (GMRM) in the UK and Estonian Biobanks and obtain the highest genomic prediction accuracy reported to date across 21 heritable traits. When compared to other approaches, GMRM accuracy was greater than annotation prediction models run in the LDAK or LDPred-funct software by 15% (SE 7%) and 14% (SE 2%), respectively, and was 18% (SE 3%) greater than a baseline BayesR model without single-nucleotide polymorphism (SNP) markers grouped into minor allele frequency–linkage disequilibrium (MAF-LD) annotation categories. For height, the prediction accuracy R 2 was 47% in a UK Biobank holdout sample, which was 76% of the estimated h SNP 2 . We then extend our GMRM prediction model to provide mixed-linear model association (MLMA) SNP marker estimates for genome-wide association (GWAS) discovery, which increased the independent loci detected to 16,162 in unrelated UK Biobank individuals, compared to 10,550 from BoltLMM and 10,095 from Regenie, a 62 and 65% increase, respectively. The average χ2 value of the leading markers increased by 15.24 (SE 0.41) for every 1% increase in prediction accuracy gained over a baseline BayesR model across the traits. Thus, we show that modeling genetic associations accounting for MAF and LD differences among SNP markers, and incorporating prior knowledge of genomic function, is important for both genomic prediction and discovery in large-scale individual-level studies.","lang":"eng"}],"oa_version":"Published Version","type":"research_data_reference","status":"public"},{"main_file_link":[{"url":"https://doi.org/10.5061/dryad.m905qfv4b","open_access":"1"}],"doi":"10.5061/DRYAD.M905QFV4B","abstract":[{"lang":"eng","text":"Chromosomal inversions have been shown to play a major role in local adaptation by suppressing recombination between alternative arrangements and maintaining beneficial allele combinations. However, so far, their importance relative to the remaining genome remains largely unknown. Understanding the genetic architecture of adaptation requires better estimates of how loci of different effect sizes contribute to phenotypic variation. Here, we used three Swedish islands where the marine snail Littorina saxatilis has repeatedly evolved into two distinct ecotypes along a habitat transition. We estimated the contribution of inversion polymorphisms to phenotypic divergence while controlling for polygenic effects in the remaining genome using a quantitative genetics framework. We confirmed the importance of inversions but showed that contributions of loci outside inversions are of similar magnitude, with variable proportions dependent on the trait and the population. Some inversions showed consistent effects across all sites, whereas others exhibited site-specific effects, indicating that the genomic basis for replicated phenotypic divergence is only partly shared. The contributions of sexual dimorphism as well as environmental factors to phenotypic variation were significant but minor compared to inversions and polygenic background. Overall, this integrated approach provides insight into the multiple mechanisms contributing to parallel phenotypic divergence."}],"date_created":"2023-05-23T16:33:12Z","oa_version":"Published Version","type":"research_data_reference","status":"public","date_updated":"2023-08-04T09:42:10Z","date_published":"2022-07-28T00:00:00Z","department":[{"_id":"NiBa"}],"year":"2022","author":[{"first_name":"Eva","last_name":"Koch","full_name":"Koch, Eva"},{"first_name":"Mark","last_name":"Ravinet","full_name":"Ravinet, Mark"},{"id":"3C147470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1050-4969","first_name":"Anja M","full_name":"Westram, Anja M","last_name":"Westram"},{"last_name":"Jonannesson","full_name":"Jonannesson, Kerstin","first_name":"Kerstin"},{"full_name":"Butlin, Roger","last_name":"Butlin","first_name":"Roger"}],"tmp":{"image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)"},"article_processing_charge":"No","oa":1,"_id":"13066","day":"28","publisher":"Dryad","citation":{"chicago":"Koch, Eva, Mark Ravinet, Anja M Westram, Kerstin Jonannesson, and Roger Butlin. “Data from: Genetic Architecture of Repeated Phenotypic Divergence in Littorina Saxatilis Ecotype Evolution.” Dryad, 2022. <a href=\"https://doi.org/10.5061/DRYAD.M905QFV4B\">https://doi.org/10.5061/DRYAD.M905QFV4B</a>.","apa":"Koch, E., Ravinet, M., Westram, A. M., Jonannesson, K., &#38; Butlin, R. (2022). Data from: Genetic architecture of repeated phenotypic divergence in Littorina saxatilis ecotype evolution. Dryad. <a href=\"https://doi.org/10.5061/DRYAD.M905QFV4B\">https://doi.org/10.5061/DRYAD.M905QFV4B</a>","ama":"Koch E, Ravinet M, Westram AM, Jonannesson K, Butlin R. Data from: Genetic architecture of repeated phenotypic divergence in Littorina saxatilis ecotype evolution. 2022. doi:<a href=\"https://doi.org/10.5061/DRYAD.M905QFV4B\">10.5061/DRYAD.M905QFV4B</a>","mla":"Koch, Eva, et al. <i>Data from: Genetic Architecture of Repeated Phenotypic Divergence in Littorina Saxatilis Ecotype Evolution</i>. Dryad, 2022, doi:<a href=\"https://doi.org/10.5061/DRYAD.M905QFV4B\">10.5061/DRYAD.M905QFV4B</a>.","ieee":"E. Koch, M. Ravinet, A. M. Westram, K. Jonannesson, and R. Butlin, “Data from: Genetic architecture of repeated phenotypic divergence in Littorina saxatilis ecotype evolution.” Dryad, 2022.","short":"E. Koch, M. Ravinet, A.M. Westram, K. Jonannesson, R. Butlin, (2022).","ista":"Koch E, Ravinet M, Westram AM, Jonannesson K, Butlin R. 2022. Data from: Genetic architecture of repeated phenotypic divergence in Littorina saxatilis ecotype evolution, Dryad, <a href=\"https://doi.org/10.5061/DRYAD.M905QFV4B\">10.5061/DRYAD.M905QFV4B</a>."},"ddc":["570"],"related_material":{"record":[{"id":"12247","status":"public","relation":"used_in_publication"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"07","title":"Data from: Genetic architecture of repeated phenotypic divergence in Littorina saxatilis ecotype evolution"},{"doi":"10.5281/ZENODO.5733408","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.5813846","open_access":"1"}],"date_created":"2023-05-23T17:05:40Z","abstract":[{"lang":"eng","text":"The source code for replicating experiments presented in the paper.\r\n\r\nThe implementation of the designed priority schedulers can be found in Galois-2.2.1/include/Galois/WorkList/:\r\nStealingMultiQueue.h is the StealingMultiQueue.\r\nMQOptimized/ contains MQ Optimized variants.\r\n\r\nWe provide images that contain all the dependencies and datasets. Images can be pulled from npostnikova/mq-based-schedulers repository, or downloaded from Zenodo. See readme for more detail."}],"oa_version":"Published Version","type":"research_data_reference","status":"public","date_updated":"2025-04-14T13:51:59Z","date_published":"2022-01-03T00:00:00Z","department":[{"_id":"DaAl"}],"year":"2022","article_processing_charge":"No","author":[{"last_name":"Postnikova","full_name":"Postnikova, Anastasiia","first_name":"Anastasiia"},{"first_name":"Nikita","id":"2F4DB10C-F248-11E8-B48F-1D18A9856A87","full_name":"Koval, Nikita","last_name":"Koval"},{"first_name":"Giorgi","id":"3279A00C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5634-0731","last_name":"Nadiradze","full_name":"Nadiradze, Giorgi"},{"first_name":"Dan-Adrian","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh"}],"oa":1,"_id":"13076","day":"03","corr_author":"1","publisher":"Zenodo","ddc":["510"],"citation":{"chicago":"Postnikova, Anastasiia, Nikita Koval, Giorgi Nadiradze, and Dan-Adrian Alistarh. “Multi-Queues Can Be State-of-the-Art Priority Schedulers.” Zenodo, 2022. <a href=\"https://doi.org/10.5281/ZENODO.5733408\">https://doi.org/10.5281/ZENODO.5733408</a>.","apa":"Postnikova, A., Koval, N., Nadiradze, G., &#38; Alistarh, D.-A. (2022). Multi-queues can be state-of-the-art priority schedulers. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.5733408\">https://doi.org/10.5281/ZENODO.5733408</a>","ama":"Postnikova A, Koval N, Nadiradze G, Alistarh D-A. Multi-queues can be state-of-the-art priority schedulers. 2022. doi:<a href=\"https://doi.org/10.5281/ZENODO.5733408\">10.5281/ZENODO.5733408</a>","mla":"Postnikova, Anastasiia, et al. <i>Multi-Queues Can Be State-of-the-Art Priority Schedulers</i>. Zenodo, 2022, doi:<a href=\"https://doi.org/10.5281/ZENODO.5733408\">10.5281/ZENODO.5733408</a>.","ieee":"A. Postnikova, N. Koval, G. Nadiradze, and D.-A. Alistarh, “Multi-queues can be state-of-the-art priority schedulers.” Zenodo, 2022.","ista":"Postnikova A, Koval N, Nadiradze G, Alistarh D-A. 2022. Multi-queues can be state-of-the-art priority schedulers, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.5733408\">10.5281/ZENODO.5733408</a>.","short":"A. Postnikova, N. Koval, G. Nadiradze, D.-A. Alistarh, (2022)."},"related_material":{"link":[{"relation":"software","url":"https://github.com/npostnikova/mq-based-schedulers/tree/v1.1"}],"record":[{"status":"public","relation":"used_in_publication","id":"11180"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","title":"Multi-queues can be state-of-the-art priority schedulers"},{"date_published":"2022-12-01T00:00:00Z","year":"2022","oa":1,"intvolume":"       199","date_created":"2023-07-16T22:01:12Z","abstract":[{"lang":"eng","text":"Brains are thought to engage in predictive learning - learning to predict upcoming stimuli - to construct an internal model of their environment. This is especially notable for spatial navigation, as first described by Tolman’s latent learning tasks. However, predictive learning has also been observed in sensory cortex, in settings unrelated to spatial navigation. Apart from normative frameworks such as active inference or efficient coding, what could be the utility of learning to predict the patterns of occurrence of correlated stimuli? Here we show that prediction, and thereby the construction of an internal model of sequential stimuli, can bootstrap the learning process of a working memory task in a recurrent neural network. We implemented predictive learning alongside working memory match-tasks, and networks emerged to solve the prediction task first by encoding information across time to predict upcoming stimuli, and then eavesdropped on this solution to solve the matching task. Eavesdropping was most beneficial when neural resources were limited. Hence, predictive learning acts as a general neural mechanism to learn to store sensory information that can later be essential for working memory tasks."}],"quality_controlled":"1","publication":"Proceedings of Machine Learning Research","volume":199,"ec_funded":1,"title":"Predictive learning enables neural networks to learn complex working memory tasks","_id":"13239","publisher":"ML Research Press","day":"01","ddc":["000"],"date_updated":"2025-04-14T07:54:31Z","department":[{"_id":"TiVo"}],"author":[{"first_name":"Thijs L.","full_name":"Van Der Plas, Thijs L.","last_name":"Van Der Plas"},{"first_name":"Tim P","orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","full_name":"Vogels, Tim P","last_name":"Vogels"},{"last_name":"Manohar","full_name":"Manohar, Sanjay G.","first_name":"Sanjay G."}],"article_processing_charge":"No","publication_status":"published","type":"conference","oa_version":"Published Version","status":"public","file":[{"file_id":"13243","date_created":"2023-07-18T06:32:38Z","access_level":"open_access","success":1,"creator":"dernst","content_type":"application/pdf","date_updated":"2023-07-18T06:32:38Z","file_name":"2022_PMLR_vanderPlas.pdf","checksum":"7530a93ef42e10b4db1e5e4b69796e93","relation":"main_file","file_size":585135}],"page":"518-531","acknowledgement":"The authors would like to thank members of the Vogels lab and Manohar lab, as well as Adam Packer, Andrew Saxe, Stefano Sarao Mannelli and Jacob Bakermans for fruitful discussions and comments on earlier versions of the manuscript.\r\nTLvdP was supported by funding from the Biotechnology and Biological Sciences Research Council (BBSRC) [grant number BB/M011224/1]. TPV was supported by an ERC Consolidator Grant (SYNAPSEEK). SGM was funded by a MRC Clinician Scientist Fellowship MR/P00878X and Leverhulme Grant RPG-2018-310.","publication_identifier":{"eissn":["2640-3498"]},"month":"12","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","file_date_updated":"2023-07-18T06:32:38Z","project":[{"_id":"0aacfa84-070f-11eb-9043-d7eb2c709234","call_identifier":"H2020","name":"Learning the shape of synaptic plasticity rules for neuronal architectures and function through machine learning.","grant_number":"819603"}],"citation":{"ama":"Van Der Plas TL, Vogels TP, Manohar SG. Predictive learning enables neural networks to learn complex working memory tasks. In: <i>Proceedings of Machine Learning Research</i>. Vol 199. ML Research Press; 2022:518-531.","chicago":"Van Der Plas, Thijs L., Tim P Vogels, and Sanjay G. Manohar. “Predictive Learning Enables Neural Networks to Learn Complex Working Memory Tasks.” In <i>Proceedings of Machine Learning Research</i>, 199:518–31. ML Research Press, 2022.","apa":"Van Der Plas, T. L., Vogels, T. P., &#38; Manohar, S. G. (2022). Predictive learning enables neural networks to learn complex working memory tasks. In <i>Proceedings of Machine Learning Research</i> (Vol. 199, pp. 518–531). ML Research Press.","mla":"Van Der Plas, Thijs L., et al. “Predictive Learning Enables Neural Networks to Learn Complex Working Memory Tasks.” <i>Proceedings of Machine Learning Research</i>, vol. 199, ML Research Press, 2022, pp. 518–31.","ista":"Van Der Plas TL, Vogels TP, Manohar SG. 2022. Predictive learning enables neural networks to learn complex working memory tasks. Proceedings of Machine Learning Research. vol. 199, 518–531.","ieee":"T. L. Van Der Plas, T. P. Vogels, and S. G. Manohar, “Predictive learning enables neural networks to learn complex working memory tasks,” in <i>Proceedings of Machine Learning Research</i>, 2022, vol. 199, pp. 518–531.","short":"T.L. Van Der Plas, T.P. Vogels, S.G. Manohar, in:, Proceedings of Machine Learning Research, ML Research Press, 2022, pp. 518–531."},"has_accepted_license":"1","language":[{"iso":"eng"}]},{"publisher":"Frontiers Media","day":"19","_id":"13240","ddc":["579"],"publication":"Frontiers in Fungal Biology","article_type":"original","title":"Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis","volume":3,"quality_controlled":"1","intvolume":"         3","date_created":"2023-07-16T22:01:12Z","abstract":[{"lang":"eng","text":"Ustilago maydis is a biotrophic phytopathogenic fungus that causes corn smut disease. As a well-established model system, U. maydis is genetically fully accessible with large omics datasets available and subject to various biological questions ranging from DNA-repair, RNA-transport, and protein secretion to disease biology. For many genetic approaches, tight control of transgene regulation is important. Here we established an optimised version of the Tetracycline-ON (TetON) system for U. maydis. We demonstrate the Tetracycline concentration-dependent expression of fluorescent protein transgenes and the system’s suitability for the induced expression of the toxic protein BCL2 Associated X-1 (Bax1). The Golden Gate compatible vector system contains a native minimal promoter from the mating factor a-1 encoding gene, mfa with ten copies of the tet-regulated operator (tetO) and a codon optimised Tet-repressor (tetR*) which is translationally fused to the native transcriptional corepressor Mql1 (UMAG_05501). The metabolism-independent transcriptional regulator system is functional both, in liquid culture as well as on solid media in the presence of the inducer and can become a useful tool for toxin-antitoxin studies, identification of antifungal proteins, and to study functions of toxic gene products in Ustilago maydis."}],"year":"2022","date_published":"2022-10-19T00:00:00Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"file_date_updated":"2023-07-17T11:46:34Z","scopus_import":"1","language":[{"iso":"eng"}],"citation":{"ama":"Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis. <i>Frontiers in Fungal Biology</i>. 2022;3. doi:<a href=\"https://doi.org/10.3389/ffunb.2022.1029114\">10.3389/ffunb.2022.1029114</a>","chicago":"Ingole, Kishor D., Nithya Nagarajan, Simon Uhse, Caterina Giannini, and Armin Djamei. “Tetracycline-Controlled (TetON) Gene Expression System for the Smut Fungus Ustilago Maydis.” <i>Frontiers in Fungal Biology</i>. Frontiers Media, 2022. <a href=\"https://doi.org/10.3389/ffunb.2022.1029114\">https://doi.org/10.3389/ffunb.2022.1029114</a>.","apa":"Ingole, K. D., Nagarajan, N., Uhse, S., Giannini, C., &#38; Djamei, A. (2022). Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis. <i>Frontiers in Fungal Biology</i>. Frontiers Media. <a href=\"https://doi.org/10.3389/ffunb.2022.1029114\">https://doi.org/10.3389/ffunb.2022.1029114</a>","mla":"Ingole, Kishor D., et al. “Tetracycline-Controlled (TetON) Gene Expression System for the Smut Fungus Ustilago Maydis.” <i>Frontiers in Fungal Biology</i>, vol. 3, 1029114, Frontiers Media, 2022, doi:<a href=\"https://doi.org/10.3389/ffunb.2022.1029114\">10.3389/ffunb.2022.1029114</a>.","short":"K.D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, A. Djamei, Frontiers in Fungal Biology 3 (2022).","ieee":"K. D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, and A. Djamei, “Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis,” <i>Frontiers in Fungal Biology</i>, vol. 3. Frontiers Media, 2022.","ista":"Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. 2022. Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago maydis. Frontiers in Fungal Biology. 3, 1029114."},"article_number":"1029114","has_accepted_license":"1","publication_identifier":{"eissn":["2673-6128"]},"acknowledgement":"The research leading to these results received funding from the European Research Council under the European Union’s Seventh Framework Programme ERC-2013-STG (grant agreement: 335691), the Austrian Science Fund (I 3033-B22), the Austrian Academy of Sciences, and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy EXC-2070-390732324 (PhenoRob) and DFG grant (DJ 64/5-1).\r\nWe would like to thank the GMI/IMBA/IMP core facilities for their excellent technical support. We would like to acknowledge Dr. Sinéad A. O’Sullivan from DZNE, University of Bonn for providing anti-GFP antibodies. The authors are thankful to the Excellence University of Bonn for providing infrastructure and instrumentation facilities at the INRES-Plant Pathology department.","file":[{"content_type":"application/pdf","creator":"dernst","success":1,"access_level":"open_access","date_created":"2023-07-17T11:46:34Z","file_id":"13242","file_size":27966699,"relation":"main_file","checksum":"2254e0119c0749d6f7237084fefcece6","date_updated":"2023-07-17T11:46:34Z","file_name":"2023_FrontiersFungalBio_Ingole.pdf"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","month":"10","type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.3389/ffunb.2022.1029114","status":"public","department":[{"_id":"JiFr"}],"date_updated":"2024-03-06T14:01:57Z","author":[{"first_name":"Kishor D.","last_name":"Ingole","full_name":"Ingole, Kishor D."},{"first_name":"Nithya","last_name":"Nagarajan","full_name":"Nagarajan, Nithya"},{"full_name":"Uhse, Simon","last_name":"Uhse","first_name":"Simon"},{"id":"e3fdddd5-f6e0-11ea-865d-ca99ee6367f4","first_name":"Caterina","full_name":"Giannini, Caterina","last_name":"Giannini"},{"first_name":"Armin","last_name":"Djamei","full_name":"Djamei, Armin"}],"article_processing_charge":"Yes"},{"publication":"Proceedings of Machine Learning Research","title":"On the impossibility of fairness-aware learning from corrupted data","volume":171,"day":"01","publisher":"ML Research Press","arxiv":1,"_id":"13241","year":"2022","date_published":"2022-12-01T00:00:00Z","oa":1,"quality_controlled":"1","main_file_link":[{"url":"https://arxiv.org/abs/2102.06004","open_access":"1"}],"intvolume":"       171","date_created":"2023-07-16T22:01:13Z","abstract":[{"lang":"eng","text":"Addressing fairness concerns about machine learning models is a crucial step towards their long-term adoption in real-world automated systems. Many approaches for training fair models from data have been developed and an implicit assumption about such algorithms is that they are able to recover a fair model, despite potential historical biases in the data. In this work we show a number of impossibility results that indicate that there is no learning algorithm that can recover a fair model when a proportion of the dataset is subject to arbitrary manipulations. Specifically, we prove that there are situations in which an adversary can force any learner to return a biased classifier, with or without degrading accuracy, and that the strength of this bias increases for learning problems with underrepresented protected groups in the data. Our results emphasize on the importance of studying further data corruption models of various strength and of establishing stricter data collection practices for fairness-aware learning."}],"publication_identifier":{"eissn":["2640-3498"]},"external_id":{"arxiv":["2102.06004"]},"page":"59-83","acknowledgement":"This paper is a shortened, workshop version of Konstantinov and Lampert (2021),\r\nhttps://arxiv.org/abs/2102.06004. For further results, including an analysis of algorithms achieving the lower bounds from this paper, we refer to the full version.","related_material":{"record":[{"status":"public","relation":"extended_version","id":"10802"}]},"month":"12","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","scopus_import":"1","language":[{"iso":"eng"}],"citation":{"chicago":"Konstantinov, Nikola H, and Christoph Lampert. “On the Impossibility of Fairness-Aware Learning from Corrupted Data.” In <i>Proceedings of Machine Learning Research</i>, 171:59–83. ML Research Press, 2022.","apa":"Konstantinov, N. H., &#38; Lampert, C. (2022). On the impossibility of fairness-aware learning from corrupted data. In <i>Proceedings of Machine Learning Research</i> (Vol. 171, pp. 59–83). ML Research Press.","ama":"Konstantinov NH, Lampert C. On the impossibility of fairness-aware learning from corrupted data. In: <i>Proceedings of Machine Learning Research</i>. Vol 171. ML Research Press; 2022:59-83.","mla":"Konstantinov, Nikola H., and Christoph Lampert. “On the Impossibility of Fairness-Aware Learning from Corrupted Data.” <i>Proceedings of Machine Learning Research</i>, vol. 171, ML Research Press, 2022, pp. 59–83.","ieee":"N. H. Konstantinov and C. Lampert, “On the impossibility of fairness-aware learning from corrupted data,” in <i>Proceedings of Machine Learning Research</i>, 2022, vol. 171, pp. 59–83.","ista":"Konstantinov NH, Lampert C. 2022. On the impossibility of fairness-aware learning from corrupted data. Proceedings of Machine Learning Research. vol. 171, 59–83.","short":"N.H. Konstantinov, C. Lampert, in:, Proceedings of Machine Learning Research, ML Research Press, 2022, pp. 59–83."},"department":[{"_id":"ChLa"}],"date_updated":"2024-10-09T21:05:54Z","article_processing_charge":"No","author":[{"last_name":"Konstantinov","full_name":"Konstantinov, Nikola H","first_name":"Nikola H","id":"4B9D76E4-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph","full_name":"Lampert, Christoph","last_name":"Lampert"}],"oa_version":"Preprint","type":"conference","publication_status":"published","status":"public"},{"quality_controlled":"1","abstract":[{"lang":"eng","text":"The first part of this paper is a survey of mathematical results on mirror symmetry phenomena between Hitchin systems for Langlands dual groups. The second part introduces\r\nand discusses multiplicity algebras of the Hitchin system on Lagrangians, and considers\r\ncorresponding conjectural structures on their mirror."}],"date_created":"2025-07-10T13:13:36Z","year":"2022","date_published":"2022-07-15T00:00:00Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"day":"15","arxiv":1,"publisher":"EMS Press","_id":"19984","ddc":["510"],"publication":"International Congress of Mathematicians","title":"Enhanced mirror symmetry for Langlands dual Hitchin systems","OA_place":"publisher","oa_version":"Published Version","type":"book_chapter","doi":"10.4171/icm2022/164","publication_status":"published","status":"public","department":[{"_id":"TaHa"}],"date_updated":"2025-09-24T09:12:13Z","article_processing_charge":"No","author":[{"full_name":"Hausel, Tamás","last_name":"Hausel","orcid":"0000-0002-9582-2634","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","first_name":"Tamás"}],"file_date_updated":"2025-09-24T09:05:05Z","corr_author":"1","language":[{"iso":"eng"}],"has_accepted_license":"1","citation":{"ista":"Hausel T. 2022.Enhanced mirror symmetry for Langlands dual Hitchin systems. In: International Congress of Mathematicians. , 2228–2249.","ieee":"T. Hausel, “Enhanced mirror symmetry for Langlands dual Hitchin systems,” in <i>International Congress of Mathematicians</i>, EMS Press, 2022, pp. 2228–2249.","short":"T. Hausel, in:, International Congress of Mathematicians, EMS Press, 2022, pp. 2228–2249.","mla":"Hausel, Tamás. “Enhanced Mirror Symmetry for Langlands Dual Hitchin Systems.” <i>International Congress of Mathematicians</i>, EMS Press, 2022, pp. 2228–49, doi:<a href=\"https://doi.org/10.4171/icm2022/164\">10.4171/icm2022/164</a>.","apa":"Hausel, T. (2022). Enhanced mirror symmetry for Langlands dual Hitchin systems. In <i>International Congress of Mathematicians</i> (pp. 2228–2249). virtuel: EMS Press. <a href=\"https://doi.org/10.4171/icm2022/164\">https://doi.org/10.4171/icm2022/164</a>","chicago":"Hausel, Tamás. “Enhanced Mirror Symmetry for Langlands Dual Hitchin Systems.” In <i>International Congress of Mathematicians</i>, 2228–49. EMS Press, 2022. <a href=\"https://doi.org/10.4171/icm2022/164\">https://doi.org/10.4171/icm2022/164</a>.","ama":"Hausel T. Enhanced mirror symmetry for Langlands dual Hitchin systems. In: <i>International Congress of Mathematicians</i>. EMS Press; 2022:2228-2249. doi:<a href=\"https://doi.org/10.4171/icm2022/164\">10.4171/icm2022/164</a>"},"publication_identifier":{"isbn":["9783985470587"],"eisbn":["9783985475582"]},"OA_type":"gold","external_id":{"arxiv":["2112.09455"]},"page":"2228-2249","acknowledgement":"The author thanks Nigel Hitchin for introducing him to Higgs bundles during 1995–1998,\r\nsuggesting the SYZ picture for Langlands dual Hitchin systems in 1996, and for the\r\nmore recent collaborations [29, 30]. He also thanks David Ben-Zvi, Pierre-Henri Chaudouard, Pierre Deligne, Ron Donagi, Sergei Gukov, Jochen Heinloth, Vadim Kaloshin,\r\nJoel Kamnitzer, Gérard Laumon, Anton Mellit, David Nadler, Andy Neitzke, Ngô Bao\r\nChâu, Michael Thaddeus, Tony Pantev, Du Pei, Richárd Rimányi, Leonid Rybnikov, Vivek\r\nShende, Balázs Szendrői, András Szenes, Fernando Rodriguez-Villegas, Edward Witten,\r\nand Zhiwei Yun for discussions about the subjects in this paper over the years. Thanks are\r\nalso due to Hülya Argüz, Jakub Löwit, Balázs Szendrői, and Nigel Hitchin for the careful\r\nreading of the paper.","file":[{"date_created":"2025-09-24T09:05:05Z","success":1,"access_level":"open_access","file_id":"20387","creator":"dernst","content_type":"application/pdf","file_name":"2022_ICM_Hausel.pdf","date_updated":"2025-09-24T09:05:05Z","file_size":655370,"checksum":"d2b9d4cf51c854f1082d8dc18c5853b1","relation":"main_file"}],"conference":{"end_date":"2022-07-14","location":"virtuel","start_date":"2022-07-06","name":"ICM: International Congress of Mathematicians"},"month":"07","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"_id":"15268","day":"01","publisher":"Wiley","pmid":1,"keyword":["Molecular Biology","Biochemistry","Structural Biology"],"publication":"Proteins: Structure, Function, and Bioinformatics","volume":90,"title":"Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior","article_type":"original","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2020.09.18.304337"}],"abstract":[{"lang":"eng","text":"Apolipoprotein A‐I (apoA‐I) has a key function in the reverse cholesterol transport. However, aggregation of apoA‐I single point mutants can lead to hereditary amyloid pathology. Although several studies have tackled the biophysical and structural consequences introduced by these mutations, there is little information addressing the relationship between the evolutionary and structural features that contribute to the amyloid behavior of apoA‐I. We combined evolutionary studies, in silico mutagenesis and molecular dynamics (MD) simulations to provide a comprehensive analysis of the conservation and pathogenic role of the aggregation‐prone regions (APRs) present in apoA‐I. Sequence analysis demonstrated that among the four amyloidogenic regions described for human apoA‐I, only two (APR1 and APR4) are evolutionary conserved across different species of Sarcopterygii. Moreover, stability analysis carried out with the FoldX engine showed that APR1 contributes to the marginal stability of apoA‐I. Structural properties of full‐length apoA‐I models suggest that aggregation is avoided by placing APRs into highly packed and rigid portions of its native fold. Compared to silent variants extracted from the gnomAD database, the thermodynamic and pathogenic impact of amyloid mutations showed evidence of a higher destabilizing effect. MD simulations of the amyloid variant G26R evidenced the partial unfolding of the alpha‐helix bundle with the concomitant exposure of APR1 to the solvent, suggesting an insight into the early steps involved in its aggregation. Our findings highlight APR1 as a relevant component for apoA‐I structural integrity and emphasize a destabilizing effect of amyloid variants that leads to the exposure of this region."}],"intvolume":"        90","date_created":"2024-04-03T07:49:53Z","quality_controlled":"1","date_published":"2022-01-01T00:00:00Z","issue":"1","year":"2022","oa":1,"corr_author":"1","citation":{"ista":"Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, Tricerri MA. 2022. Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior. Proteins: Structure, Function, and Bioinformatics. 90(1), 258–269.","short":"R.A. Gisonno, T. Masson, N.A. Ramella, E.E. Barrera, V. Romanowski, M.A. Tricerri, Proteins: Structure, Function, and Bioinformatics 90 (2022) 258–269.","ieee":"R. A. Gisonno, T. Masson, N. A. Ramella, E. E. Barrera, V. Romanowski, and M. A. Tricerri, “Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior,” <i>Proteins: Structure, Function, and Bioinformatics</i>, vol. 90, no. 1. Wiley, pp. 258–269, 2022.","mla":"Gisonno, Romina A., et al. “Evolutionary and Structural Constraints Influencing Apolipoprotein A‐I Amyloid Behavior.” <i>Proteins: Structure, Function, and Bioinformatics</i>, vol. 90, no. 1, Wiley, 2022, pp. 258–69, doi:<a href=\"https://doi.org/10.1002/prot.26217\">10.1002/prot.26217</a>.","apa":"Gisonno, R. A., Masson, T., Ramella, N. A., Barrera, E. E., Romanowski, V., &#38; Tricerri, M. A. (2022). Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior. <i>Proteins: Structure, Function, and Bioinformatics</i>. Wiley. <a href=\"https://doi.org/10.1002/prot.26217\">https://doi.org/10.1002/prot.26217</a>","chicago":"Gisonno, Romina A., Tomas Masson, Nahuel A. Ramella, Exequiel E. Barrera, Víctor Romanowski, and M. Alejandra Tricerri. “Evolutionary and Structural Constraints Influencing Apolipoprotein A‐I Amyloid Behavior.” <i>Proteins: Structure, Function, and Bioinformatics</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/prot.26217\">https://doi.org/10.1002/prot.26217</a>.","ama":"Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, Tricerri MA. Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior. <i>Proteins: Structure, Function, and Bioinformatics</i>. 2022;90(1):258-269. doi:<a href=\"https://doi.org/10.1002/prot.26217\">10.1002/prot.26217</a>"},"language":[{"iso":"eng"}],"external_id":{"pmid":["34414600"]},"page":"258-269","publication_identifier":{"issn":["0887-3585"],"eissn":["1097-0134"]},"month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1002/prot.26217","publication_status":"published","oa_version":"Preprint","type":"journal_article","status":"public","date_updated":"2024-10-09T21:08:44Z","department":[{"_id":"MaJö"}],"article_processing_charge":"No","author":[{"first_name":"Romina A.","full_name":"Gisonno, Romina A.","last_name":"Gisonno"},{"full_name":"Masson, Tomas","last_name":"Masson","first_name":"Tomas","id":"93ac43e8-8599-11eb-9b86-f6efb0a4c207","orcid":"0000-0002-2634-6283"},{"last_name":"Ramella","full_name":"Ramella, Nahuel A.","first_name":"Nahuel A."},{"first_name":"Exequiel E.","last_name":"Barrera","full_name":"Barrera, Exequiel E."},{"first_name":"Víctor","last_name":"Romanowski","full_name":"Romanowski, Víctor"},{"first_name":"M. Alejandra","last_name":"Tricerri","full_name":"Tricerri, M. Alejandra"}]},{"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://ddd.uab.cat/pub/artpub/2022/270830/10.1016j.cej.2021.133837.pdf"}],"intvolume":"       433","abstract":[{"text":"A versatile, scalable, room temperature and surfactant-free route for the synthesis of metal chalcogenide nanoparticles in aqueous solution is detailed here for the production of PbS and Cu-doped PbS nanoparticles. Subsequently, nanoparticles are annealed in a reducing atmosphere to remove surface oxide, and consolidated into dense polycrystalline materials by means of spark plasma sintering. By characterizing the transport properties of the sintered material, we observe the annealing step and the incorporation of Cu to play a key role in promoting the thermoelectric performance of PbS. The presence of Cu allows improving the electrical conductivity by increasing the charge carrier concentration and simultaneously maintaining a large charge carrier mobility, which overall translates into record power factors at ambient temperature, 2.3 mWm-1K−2. Simultaneously, the lattice thermal conductivity decreases with the introduction of Cu, leading to a record high ZT = 0.37 at room temperature and ZT = 1.22 at 773 K. Besides, a record average ZTave = 0.76 is demonstrated in the temperature range 320–773 K for n-type Pb0.955Cu0.045S.","lang":"eng"}],"date_created":"2021-12-19T23:01:33Z","year":"2022","date_published":"2022-04-01T00:00:00Z","oa":1,"day":"01","publisher":"Elsevier","_id":"10566","publication":"Chemical Engineering Journal","article_type":"original","title":"Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application","ec_funded":1,"volume":433,"oa_version":"Submitted Version","type":"journal_article","doi":"10.1016/j.cej.2021.133837","publication_status":"published","status":"public","isi":1,"department":[{"_id":"MaIb"}],"date_updated":"2025-04-14T07:43:48Z","article_processing_charge":"No","author":[{"full_name":"Li, Mengyao","last_name":"Li","first_name":"Mengyao"},{"first_name":"Yu","orcid":"0000-0001-7313-6740","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","full_name":"Liu, Yu","last_name":"Liu"},{"first_name":"Yu","last_name":"Zhang","full_name":"Zhang, Yu"},{"orcid":"0000-0002-9515-4277","id":"9E331C2E-9F27-11E9-AE48-5033E6697425","first_name":"Cheng","full_name":"Chang, Cheng","last_name":"Chang"},{"first_name":"Ting","last_name":"Zhang","full_name":"Zhang, Ting"},{"last_name":"Yang","full_name":"Yang, Dawei","first_name":"Dawei"},{"first_name":"Ke","full_name":"Xiao, Ke","last_name":"Xiao"},{"first_name":"Jordi","full_name":"Arbiol, Jordi","last_name":"Arbiol"},{"last_name":"Ibáñez","full_name":"Ibáñez, Maria","first_name":"Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"name":"Bottom-up Engineering for Thermoelectric Applications","_id":"9B8804FC-BA93-11EA-9121-9846C619BF3A","grant_number":"M02889"},{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"corr_author":"1","scopus_import":"1","language":[{"iso":"eng"}],"article_number":"133837","citation":{"short":"M. Li, Y. Liu, Y. Zhang, C. Chang, T. Zhang, D. Yang, K. Xiao, J. Arbiol, M. Ibáñez, A. Cabot, Chemical Engineering Journal 433 (2022).","ieee":"M. Li <i>et al.</i>, “Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application,” <i>Chemical Engineering Journal</i>, vol. 433. Elsevier, 2022.","ista":"Li M, Liu Y, Zhang Y, Chang C, Zhang T, Yang D, Xiao K, Arbiol J, Ibáñez M, Cabot A. 2022. Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. Chemical Engineering Journal. 433, 133837.","mla":"Li, Mengyao, et al. “Room Temperature Aqueous-Based Synthesis of Copper-Doped Lead Sulfide Nanoparticles for Thermoelectric Application.” <i>Chemical Engineering Journal</i>, vol. 433, 133837, Elsevier, 2022, doi:<a href=\"https://doi.org/10.1016/j.cej.2021.133837\">10.1016/j.cej.2021.133837</a>.","ama":"Li M, Liu Y, Zhang Y, et al. Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. <i>Chemical Engineering Journal</i>. 2022;433. doi:<a href=\"https://doi.org/10.1016/j.cej.2021.133837\">10.1016/j.cej.2021.133837</a>","apa":"Li, M., Liu, Y., Zhang, Y., Chang, C., Zhang, T., Yang, D., … Cabot, A. (2022). Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application. <i>Chemical Engineering Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cej.2021.133837\">https://doi.org/10.1016/j.cej.2021.133837</a>","chicago":"Li, Mengyao, Yu Liu, Yu Zhang, Cheng Chang, Ting Zhang, Dawei Yang, Ke Xiao, Jordi Arbiol, Maria Ibáñez, and Andreu Cabot. “Room Temperature Aqueous-Based Synthesis of Copper-Doped Lead Sulfide Nanoparticles for Thermoelectric Application.” <i>Chemical Engineering Journal</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.cej.2021.133837\">https://doi.org/10.1016/j.cej.2021.133837</a>."},"publication_identifier":{"issn":["1385-8947"]},"external_id":{"isi":["000773425200006"]},"acknowledgement":"This work was supported by the European Regional Development Funds. MYL, YZ, DWY and KX thank the China Scholarship Council for scholarship support. YL acknowledges funding from the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411 and the funding for scientific research startup of Hefei University of Technology (No. 13020-03712021049). MI acknowledges funding from IST Austria and the Werner Siemens Foundation. CC acknowledges funding from the FWF “Lise Meitner Fellowship” grant agreement M 2889-N. TZ has received funding from the CSC-UAB PhD scholarship program. ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327. ICN2 thanks support from the project NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/. ICN2 is supported by the Severo Ochoa program from Spanish MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme / Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD program.","month":"04","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"citation":{"chicago":"Struk, Sylwia, Lukas Braem, Cedrick Matthys, Alan Walton, Nick Vangheluwe, Stan Van Praet, Lingxiang Jiang, et al. “Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.” <i>Plant &#38; Cell Physiology</i>. Oxford University Press, 2022. <a href=\"https://doi.org/10.1093/pcp/pcab149\">https://doi.org/10.1093/pcp/pcab149</a>.","apa":"Struk, S., Braem, L., Matthys, C., Walton, A., Vangheluwe, N., Van Praet, S., … Goormachtig, S. (2022). Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. <i>Plant &#38; Cell Physiology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/pcp/pcab149\">https://doi.org/10.1093/pcp/pcab149</a>","ama":"Struk S, Braem L, Matthys C, et al. Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. <i>Plant &#38; Cell Physiology</i>. 2022;63(1):104-119. doi:<a href=\"https://doi.org/10.1093/pcp/pcab149\">10.1093/pcp/pcab149</a>","mla":"Struk, Sylwia, et al. “Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators That Link Rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.” <i>Plant &#38; Cell Physiology</i>, vol. 63, no. 1, Oxford University Press, 2022, pp. 104–19, doi:<a href=\"https://doi.org/10.1093/pcp/pcab149\">10.1093/pcp/pcab149</a>.","short":"S. Struk, L. Braem, C. Matthys, A. Walton, N. Vangheluwe, S. Van Praet, L. Jiang, P. Baster, C. De Cuyper, F.-D. Boyer, E. Stes, T. Beeckman, J. Friml, K. Gevaert, S. Goormachtig, Plant &#38; Cell Physiology 63 (2022) 104–119.","ista":"Struk S, Braem L, Matthys C, Walton A, Vangheluwe N, Van Praet S, Jiang L, Baster P, De Cuyper C, Boyer F-D, Stes E, Beeckman T, Friml J, Gevaert K, Goormachtig S. 2022. Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density. Plant &#38; Cell Physiology. 63(1), 104–119.","ieee":"S. Struk <i>et al.</i>, “Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density,” <i>Plant &#38; Cell Physiology</i>, vol. 63, no. 1. Oxford University Press, pp. 104–119, 2022."},"language":[{"iso":"eng"}],"scopus_import":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"01","external_id":{"isi":["000877899400009"],"pmid":["34791413"]},"acknowledgement":"The authors thank Ralf Stracke (Bielefeld University, Bielefeld, Germany) for providing the myb mutants and their colleagues Bert De Rybel for the tmo5t;mo5l1 double mutant, Boris Parizot for tips on the RNA-seq analysis, Veronique Storme for statistical help on both the RNA-seq and lateral root density, and Martine De Cock for help in preparing the manuscript.","page":"104-119","publication_identifier":{"eissn":["1471-9053"],"issn":["0032-0781"]},"isi":1,"status":"public","doi":"10.1093/pcp/pcab149","publication_status":"published","oa_version":"Published Version","type":"journal_article","article_processing_charge":"No","author":[{"last_name":"Struk","full_name":"Struk, Sylwia","first_name":"Sylwia"},{"first_name":"Lukas","last_name":"Braem","full_name":"Braem, Lukas"},{"first_name":"Cedrick","full_name":"Matthys, Cedrick","last_name":"Matthys"},{"first_name":"Alan","full_name":"Walton, Alan","last_name":"Walton"},{"last_name":"Vangheluwe","full_name":"Vangheluwe, Nick","first_name":"Nick"},{"first_name":"Stan","full_name":"Van Praet, Stan","last_name":"Van Praet"},{"last_name":"Jiang","full_name":"Jiang, Lingxiang","first_name":"Lingxiang"},{"first_name":"Pawel","id":"3028BD74-F248-11E8-B48F-1D18A9856A87","last_name":"Baster","full_name":"Baster, Pawel"},{"full_name":"De Cuyper, Carolien","last_name":"De Cuyper","first_name":"Carolien"},{"first_name":"Francois-Didier","last_name":"Boyer","full_name":"Boyer, Francois-Didier"},{"first_name":"Elisabeth","last_name":"Stes","full_name":"Stes, Elisabeth"},{"full_name":"Beeckman, Tom","last_name":"Beeckman","first_name":"Tom"},{"last_name":"Friml","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","first_name":"Jiří"},{"first_name":"Kris","last_name":"Gevaert","full_name":"Gevaert, Kris"},{"full_name":"Goormachtig, Sofie","last_name":"Goormachtig","first_name":"Sofie"}],"date_updated":"2023-08-02T13:40:43Z","department":[{"_id":"JiFr"}],"pmid":1,"_id":"10583","day":"21","publisher":"Oxford University Press","volume":63,"title":"Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density","article_type":"original","publication":"Plant & Cell Physiology","keyword":["flavonols","MAX2","rac-Gr24","RNA-seq","root development","transcriptional regulation"],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1093/pcp/pcab149"}],"intvolume":"        63","abstract":[{"lang":"eng","text":"The synthetic strigolactone (SL) analog, rac-GR24, has been instrumental in studying the role of SLs as well as karrikins because it activates the receptors DWARF14 (D14) and KARRIKIN INSENSITIVE 2 (KAI2) of their signaling pathways, respectively. Treatment with rac-GR24 modifies the root architecture at different levels, such as decreasing the lateral root density (LRD), while promoting root hair elongation or flavonol accumulation. Previously, we have shown that the flavonol biosynthesis is transcriptionally activated in the root by rac-GR24 treatment, but, thus far, the molecular players involved in that response have remained unknown. To get an in-depth insight into the changes that occur after the compound is perceived by the roots, we compared the root transcriptomes of the wild type and the more axillary growth2 (max2) mutant, affected in both SL and karrikin signaling pathways, with and without rac-GR24 treatment. Quantitative reverse transcription (qRT)-PCR, reporter line analysis and mutant phenotyping indicated that the flavonol response and the root hair elongation are controlled by the ELONGATED HYPOCOTYL 5 (HY5) and MYB12 transcription factors, but HY5, in contrast to MYB12, affects the LRD as well. Furthermore, we identified the transcription factors TARGET OF MONOPTEROS 5 (TMO5) and TMO5 LIKE1 as negative and the Mediator complex as positive regulators of the rac-GR24 effect on LRD. Altogether, hereby, we get closer toward understanding the molecular mechanisms that underlay the rac-GR24 responses in the root."}],"date_created":"2021-12-28T11:44:18Z","quality_controlled":"1","oa":1,"date_published":"2022-01-21T00:00:00Z","issue":"1","year":"2022"},{"publication_identifier":{"eissn":["2072-666X"]},"acknowledgement":"The authors acknowledge the financial assistance provided by the University of Huddersfield.","file":[{"file_size":5370675,"relation":"main_file","checksum":"5d062cae3f1acb251cacb21021724c4e","file_name":"2021_Micromachines_Singh.pdf","date_updated":"2022-01-03T13:43:01Z","content_type":"application/pdf","creator":"alisjak","access_level":"open_access","success":1,"date_created":"2022-01-03T13:43:01Z","file_id":"10601"}],"external_id":{"isi":["000758547200001"]},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","month":"01","file_date_updated":"2022-01-03T13:43:01Z","scopus_import":"1","language":[{"iso":"eng"}],"citation":{"mla":"Nirwan, Jorabar Singh, et al. “Electrically Tunable Lens (ETL) - Based Variable Focus Imaging System for Parametric Surface Texture Analysis of Materials.” <i>Micromachines</i>, vol. 13, no. 1, 17, MDPI, 2022, doi:<a href=\"https://doi.org/10.3390/mi13010017\">10.3390/mi13010017</a>.","short":"J.S. Nirwan, S. Lou, S. Hussain, M. Nauman, T. Hussain, B.R. Conway, M.U. Ghori, Micromachines 13 (2022).","ieee":"J. S. Nirwan <i>et al.</i>, “Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials,” <i>Micromachines</i>, vol. 13, no. 1. MDPI, 2022.","ista":"Nirwan JS, Lou S, Hussain S, Nauman M, Hussain T, Conway BR, Ghori MU. 2022. Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. Micromachines. 13(1), 17.","ama":"Nirwan JS, Lou S, Hussain S, et al. Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. <i>Micromachines</i>. 2022;13(1). doi:<a href=\"https://doi.org/10.3390/mi13010017\">10.3390/mi13010017</a>","chicago":"Nirwan, Jorabar Singh, Shan Lou, Saqib Hussain, Muhammad Nauman, Tariq Hussain, Barbara R. Conway, and Muhammad Usman Ghori. “Electrically Tunable Lens (ETL) - Based Variable Focus Imaging System for Parametric Surface Texture Analysis of Materials.” <i>Micromachines</i>. MDPI, 2022. <a href=\"https://doi.org/10.3390/mi13010017\">https://doi.org/10.3390/mi13010017</a>.","apa":"Nirwan, J. S., Lou, S., Hussain, S., Nauman, M., Hussain, T., Conway, B. R., &#38; Ghori, M. U. (2022). Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials. <i>Micromachines</i>. MDPI. <a href=\"https://doi.org/10.3390/mi13010017\">https://doi.org/10.3390/mi13010017</a>"},"article_number":"17","has_accepted_license":"1","department":[{"_id":"KiMo"}],"date_updated":"2023-08-09T10:16:10Z","author":[{"full_name":"Nirwan, Jorabar Singh","last_name":"Nirwan","first_name":"Jorabar Singh"},{"full_name":"Lou, Shan","last_name":"Lou","first_name":"Shan"},{"first_name":"Saqib","full_name":"Hussain, Saqib","last_name":"Hussain"},{"full_name":"Nauman, Muhammad","last_name":"Nauman","first_name":"Muhammad","orcid":"0000-0002-2111-4846","id":"32c21954-2022-11eb-9d5f-af9f93c24e71"},{"first_name":"Tariq","full_name":"Hussain, Tariq","last_name":"Hussain"},{"full_name":"Conway, Barbara R.","last_name":"Conway","first_name":"Barbara R."},{"first_name":"Muhammad Usman","last_name":"Ghori","full_name":"Ghori, Muhammad Usman"}],"article_processing_charge":"Yes","type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.3390/mi13010017","status":"public","isi":1,"publication":"Micromachines","keyword":["surface texture","electrically tunable lens","materials","hypromellose","surface topography","surface roughness","pharmaceutical tablet","variable focus imaging"],"article_type":"original","title":"Electrically tunable lens (ETL) - based variable focus imaging system for parametric surface texture analysis of materials","volume":13,"publisher":"MDPI","day":"01","_id":"10584","ddc":["620"],"year":"2022","issue":"1","date_published":"2022-01-01T00:00:00Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"quality_controlled":"1","date_created":"2022-01-02T23:01:33Z","intvolume":"        13","abstract":[{"lang":"eng","text":"Electrically tunable lenses (ETLs) are those with the ability to alter their optical power in response to an electric signal. This feature allows such systems to not only image the areas of interest but also obtain spatial depth perception (depth of field, DOF). The aim of the present study was to develop an ETL-based imaging system for quantitative surface analysis. Firstly, the system was calibrated to achieve high depth resolution, warranting the accurate measurement of the depth and to account for and correct any influences from external factors on the ETL. This was completed using the Tenengrad operator which effectively identified the plane of best focus as demonstrated by the linear relationship between the control current applied to the ETL and the height at which the optical system focuses. The system was then employed to measure amplitude, spatial, hybrid, and volume surface texture parameters of a model material (pharmaceutical dosage form) which were validated against the parameters obtained using a previously validated surface texture analysis technique, optical profilometry. There were no statistically significant differences between the surface texture parameters measured by the techniques, highlighting the potential application of ETL-based imaging systems as an easily adaptable and low-cost alternative surface texture analysis technique to conventional microscopy techniques"}]},{"keyword":["interfacial assembly","colloidal nanocrystal","superlattice","inkjet printing"],"publication":"Nano Research","volume":15,"article_type":"original","title":"Inkjet printing of epitaxially connected nanocrystal superlattices","_id":"10587","day":"01","publisher":"Springer Nature","date_published":"2022-05-01T00:00:00Z","issue":"5","year":"2022","oa":1,"main_file_link":[{"url":"https://www.osti.gov/biblio/1837946","open_access":"1"}],"abstract":[{"text":"Access to a blossoming library of colloidal nanomaterials provides building blocks for complex assembled materials. The journey to bring these prospects to fruition stands to benefit from the application of advanced processing methods. Epitaxially connected nanocrystal (or quantum dot) superlattices present a captivating model system for mesocrystals with intriguing emergent properties. The conventional processing approach to creating these materials involves assembling and attaching the constituent nanocrystals at the interface between two immiscible fluids. Processing small liquid volumes of the colloidal nanocrystal solution involves several complexities arising from the concurrent spreading, evaporation, assembly, and attachment. The ability of inkjet printers to deliver small (typically picoliter) liquid volumes with precise positioning is attractive to advance fundamental insights into the processing science, and thereby potentially enable new routes to incorporate the epitaxially connected superlattices into technology platforms. In this study, we identified the processing window of opportunity, including nanocrystal ink formulation and printing approach to enable delivery of colloidal nanocrystals from an inkjet nozzle onto the surface of a sessile droplet of the immiscible subphase. We demonstrate how inkjet printing can be scaled-down to enable the fabrication of epitaxially connected superlattices on patterned sub-millimeter droplets. We anticipate that insights from this work will spur on future advances to enable more mechanistic insights into the assembly processes and new avenues to create high-fidelity superlattices.","lang":"eng"}],"intvolume":"        15","date_created":"2022-01-02T23:01:34Z","quality_controlled":"1","external_id":{"isi":["000735340300001"]},"acknowledgement":"This project was supported by the US Department of Energy through award (No. DE-SC0018026). The work was performed in part at the Cornell NanoScale Facility, a member of the National Nanotechnology Coordinated Infrastructure (NNCI), which is supported by the National Science Foundation (No. NNCI-1542081) and in part at the Cornell Center for Materials Research with funding from the NSF MRSEC program (No. DMR-1719875). The authors thank Beth Rhodes for the technical assistance with inkjet printing, and E. Peretz and Q. Wen for the early exploratory experiments.","page":"4536–4543","publication_identifier":{"issn":["1998-0124"],"eissn":["1998-0000"]},"month":"05","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","citation":{"ista":"Balazs D, Erkan ND, Quien M, Hanrath T. 2022. Inkjet printing of epitaxially connected nanocrystal superlattices. Nano Research. 15(5), 4536–4543.","ieee":"D. Balazs, N. D. Erkan, M. Quien, and T. Hanrath, “Inkjet printing of epitaxially connected nanocrystal superlattices,” <i>Nano Research</i>, vol. 15, no. 5. Springer Nature, pp. 4536–4543, 2022.","short":"D. Balazs, N.D. Erkan, M. Quien, T. Hanrath, Nano Research 15 (2022) 4536–4543.","mla":"Balazs, Daniel, et al. “Inkjet Printing of Epitaxially Connected Nanocrystal Superlattices.” <i>Nano Research</i>, vol. 15, no. 5, Springer Nature, 2022, pp. 4536–4543, doi:<a href=\"https://doi.org/10.1007/s12274-021-4022-7\">10.1007/s12274-021-4022-7</a>.","ama":"Balazs D, Erkan ND, Quien M, Hanrath T. Inkjet printing of epitaxially connected nanocrystal superlattices. <i>Nano Research</i>. 2022;15(5):4536–4543. doi:<a href=\"https://doi.org/10.1007/s12274-021-4022-7\">10.1007/s12274-021-4022-7</a>","apa":"Balazs, D., Erkan, N. D., Quien, M., &#38; Hanrath, T. (2022). Inkjet printing of epitaxially connected nanocrystal superlattices. <i>Nano Research</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s12274-021-4022-7\">https://doi.org/10.1007/s12274-021-4022-7</a>","chicago":"Balazs, Daniel, N. Deniz Erkan, Michelle Quien, and Tobias Hanrath. “Inkjet Printing of Epitaxially Connected Nanocrystal Superlattices.” <i>Nano Research</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s12274-021-4022-7\">https://doi.org/10.1007/s12274-021-4022-7</a>."},"language":[{"iso":"eng"}],"date_updated":"2023-08-02T13:47:21Z","department":[{"_id":"MaIb"}],"article_processing_charge":"No","author":[{"last_name":"Balazs","full_name":"Balazs, Daniel","first_name":"Daniel","orcid":"0000-0001-7597-043X","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E"},{"full_name":"Erkan, N. Deniz","last_name":"Erkan","first_name":"N. Deniz"},{"last_name":"Quien","full_name":"Quien, Michelle","first_name":"Michelle"},{"first_name":"Tobias","last_name":"Hanrath","full_name":"Hanrath, Tobias"}],"doi":"10.1007/s12274-021-4022-7","publication_status":"published","oa_version":"Submitted Version","type":"journal_article","isi":1,"status":"public"},{"_id":"10588","publisher":"Springer Nature","arxiv":1,"day":"01","ddc":["510"],"publication":"Mathematische Annalen","keyword":["quasi curvature-dimension condition","sub-riemannian geometry","Sobolev-to-Lipschitz property","Varadhan short-time asymptotics"],"volume":384,"ec_funded":1,"title":"Sobolev-to-Lipschitz property on QCD- spaces and applications","article_type":"original","abstract":[{"lang":"eng","text":"We prove the Sobolev-to-Lipschitz property for metric measure spaces satisfying the quasi curvature-dimension condition recently introduced in Milman (Commun Pure Appl Math, to appear). We provide several applications to properties of the corresponding heat semigroup. In particular, under the additional assumption of infinitesimal Hilbertianity, we show the Varadhan short-time asymptotics for the heat semigroup with respect to the distance, and prove the irreducibility of the heat semigroup. These results apply in particular to large classes of (ideal) sub-Riemannian manifolds."}],"date_created":"2022-01-02T23:01:35Z","intvolume":"       384","quality_controlled":"1","date_published":"2022-12-01T00:00:00Z","year":"2022","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"scopus_import":"1","corr_author":"1","project":[{"_id":"256E75B8-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117"},{"name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"file_date_updated":"2022-01-03T11:08:31Z","citation":{"chicago":"Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property on QCD- Spaces and Applications.” <i>Mathematische Annalen</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00208-021-02331-2\">https://doi.org/10.1007/s00208-021-02331-2</a>.","apa":"Dello Schiavo, L., &#38; Suzuki, K. (2022). Sobolev-to-Lipschitz property on QCD- spaces and applications. <i>Mathematische Annalen</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00208-021-02331-2\">https://doi.org/10.1007/s00208-021-02331-2</a>","ama":"Dello Schiavo L, Suzuki K. Sobolev-to-Lipschitz property on QCD- spaces and applications. <i>Mathematische Annalen</i>. 2022;384:1815-1832. doi:<a href=\"https://doi.org/10.1007/s00208-021-02331-2\">10.1007/s00208-021-02331-2</a>","mla":"Dello Schiavo, Lorenzo, and Kohei Suzuki. “Sobolev-to-Lipschitz Property on QCD- Spaces and Applications.” <i>Mathematische Annalen</i>, vol. 384, Springer Nature, 2022, pp. 1815–32, doi:<a href=\"https://doi.org/10.1007/s00208-021-02331-2\">10.1007/s00208-021-02331-2</a>.","ista":"Dello Schiavo L, Suzuki K. 2022. Sobolev-to-Lipschitz property on QCD- spaces and applications. Mathematische Annalen. 384, 1815–1832.","ieee":"L. Dello Schiavo and K. Suzuki, “Sobolev-to-Lipschitz property on QCD- spaces and applications,” <i>Mathematische Annalen</i>, vol. 384. Springer Nature, pp. 1815–1832, 2022.","short":"L. Dello Schiavo, K. Suzuki, Mathematische Annalen 384 (2022) 1815–1832."},"has_accepted_license":"1","language":[{"iso":"eng"}],"page":"1815-1832","file":[{"content_type":"application/pdf","creator":"alisjak","file_id":"10596","date_created":"2022-01-03T11:08:31Z","access_level":"open_access","success":1,"checksum":"2593abbf195e38efa93b6006b1e90eb1","relation":"main_file","file_size":410090,"date_updated":"2022-01-03T11:08:31Z","file_name":"2021_MathAnn_DelloSchiavo.pdf"}],"acknowledgement":"The authors are grateful to Dr. Bang-Xian Han for helpful discussions on the Sobolev-to-Lipschitz property on metric measure spaces, and to Professor Kazuhiro Kuwae, Professor Emanuel Milman, Dr. Giorgio Stefani, and Dr. Gioacchino Antonelli for reading a preliminary version of this work and for their valuable comments and suggestions. Finally, they wish to express their gratitude to two anonymous Reviewers whose suggestions improved the presentation of this work.\r\n\r\nL.D.S. gratefully acknowledges funding of his position by the Austrian Science Fund (FWF) grant F65, and by the European Research Council (ERC, grant No. 716117, awarded to Prof. Dr. Jan Maas).\r\n\r\nK.S. gratefully acknowledges funding by: the JSPS Overseas Research Fellowships, Grant Nr. 290142; World Premier International Research Center Initiative (WPI), MEXT, Japan; JSPS Grant-in-Aid for Scientific Research on Innovative Areas “Discrete Geometric Analysis for Materials Design”, Grant Number 17H06465; and the Alexander von Humboldt Stiftung, Humboldt-Forschungsstipendium.","external_id":{"arxiv":["2110.05137"],"isi":["000734150200001"]},"publication_identifier":{"eissn":["1432-1807"],"issn":["0025-5831"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"12","publication_status":"published","doi":"10.1007/s00208-021-02331-2","type":"journal_article","oa_version":"Published Version","isi":1,"status":"public","date_updated":"2025-04-14T07:27:46Z","department":[{"_id":"JaMa"}],"author":[{"id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","orcid":"0000-0002-9881-6870","first_name":"Lorenzo","full_name":"Dello Schiavo, Lorenzo","last_name":"Dello Schiavo"},{"last_name":"Suzuki","full_name":"Suzuki, Kohei","first_name":"Kohei"}],"article_processing_charge":"Yes (via OA deal)"},{"isi":1,"status":"public","publication_status":"published","doi":"10.1038/s41567-021-01459-x","type":"journal_article","oa_version":"None","article_processing_charge":"No","author":[{"full_name":"Higginbotham, Andrew P","last_name":"Higginbotham","first_name":"Andrew P","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2607-2363"}],"date_updated":"2024-10-09T21:01:21Z","department":[{"_id":"AnHi"}],"citation":{"apa":"Higginbotham, A. P. (2022). A secret source. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-021-01459-x\">https://doi.org/10.1038/s41567-021-01459-x</a>","chicago":"Higginbotham, Andrew P. “A Secret Source.” <i>Nature Physics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41567-021-01459-x\">https://doi.org/10.1038/s41567-021-01459-x</a>.","ama":"Higginbotham AP. A secret source. <i>Nature Physics</i>. 2022;18:126. doi:<a href=\"https://doi.org/10.1038/s41567-021-01459-x\">10.1038/s41567-021-01459-x</a>","ieee":"A. P. Higginbotham, “A secret source,” <i>Nature Physics</i>, vol. 18. Springer Nature, p. 126, 2022.","short":"A.P. Higginbotham, Nature Physics 18 (2022) 126.","ista":"Higginbotham AP. 2022. A secret source. Nature Physics. 18, 126.","mla":"Higginbotham, Andrew P. “A Secret Source.” <i>Nature Physics</i>, vol. 18, Springer Nature, 2022, p. 126, doi:<a href=\"https://doi.org/10.1038/s41567-021-01459-x\">10.1038/s41567-021-01459-x</a>."},"language":[{"iso":"eng"}],"scopus_import":"1","corr_author":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"02","page":"126","external_id":{"isi":["000733431000007"]},"publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"abstract":[{"lang":"eng","text":"Superconducting devices ubiquitously have an excess of broken Cooper pairs, which can hamper their performance. It is widely believed that external radiation is responsible but a study now suggests there must be an additional, unknown source."}],"intvolume":"        18","date_created":"2022-01-02T23:01:35Z","quality_controlled":"1","date_published":"2022-02-01T00:00:00Z","year":"2022","_id":"10589","publisher":"Springer Nature","day":"01","volume":18,"article_type":"letter_note","title":"A secret source","publication":"Nature Physics","keyword":["superconducting devices","superconducting properties and materials"]},{"_id":"10600","day":"03","publisher":"AIP Publishing","arxiv":1,"keyword":["mathematical physics","statistical and nonlinear physics"],"publication":"Journal of Mathematical Physics","volume":63,"title":"Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap","article_type":"original","ec_funded":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2012.15238","open_access":"1"}],"date_created":"2022-01-03T12:19:48Z","intvolume":"        63","abstract":[{"lang":"eng","text":"We show that recent results on adiabatic theory for interacting gapped many-body systems on finite lattices remain valid in the thermodynamic limit. More precisely, we prove a generalized super-adiabatic theorem for the automorphism group describing the infinite volume dynamics on the quasi-local algebra of observables. The key assumption is the existence of a sequence of gapped finite volume Hamiltonians, which generates the same infinite volume dynamics in the thermodynamic limit. Our adiabatic theorem also holds for certain perturbations of gapped ground states that close the spectral gap (so it is also an adiabatic theorem for resonances and, in this sense, “generalized”), and it provides an adiabatic approximation to all orders in the adiabatic parameter (a property often called “super-adiabatic”). In addition to the existing results for finite lattices, we also perform a resummation of the adiabatic expansion and allow for observables that are not strictly local. Finally, as an application, we prove the validity of linear and higher order response theory for our class of perturbations for infinite systems. While we consider the result and its proof as new and interesting in itself, we also lay the foundation for the proof of an adiabatic theorem for systems with a gap only in the bulk, which will be presented in a follow-up article."}],"quality_controlled":"1","date_published":"2022-01-03T00:00:00Z","issue":"1","year":"2022","oa":1,"scopus_import":"1","project":[{"grant_number":"101020331","call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"article_number":"011901","citation":{"short":"S.J. Henheik, S. Teufel, Journal of Mathematical Physics 63 (2022).","ista":"Henheik SJ, Teufel S. 2022. Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. Journal of Mathematical Physics. 63(1), 011901.","ieee":"S. J. Henheik and S. Teufel, “Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap,” <i>Journal of Mathematical Physics</i>, vol. 63, no. 1. AIP Publishing, 2022.","mla":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Uniform Gap.” <i>Journal of Mathematical Physics</i>, vol. 63, no. 1, 011901, AIP Publishing, 2022, doi:<a href=\"https://doi.org/10.1063/5.0051632\">10.1063/5.0051632</a>.","apa":"Henheik, S. J., &#38; Teufel, S. (2022). Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0051632\">https://doi.org/10.1063/5.0051632</a>","chicago":"Henheik, Sven Joscha, and Stefan Teufel. “Adiabatic Theorem in the Thermodynamic Limit: Systems with a Uniform Gap.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2022. <a href=\"https://doi.org/10.1063/5.0051632\">https://doi.org/10.1063/5.0051632</a>.","ama":"Henheik SJ, Teufel S. Adiabatic theorem in the thermodynamic limit: Systems with a uniform gap. <i>Journal of Mathematical Physics</i>. 2022;63(1). doi:<a href=\"https://doi.org/10.1063/5.0051632\">10.1063/5.0051632</a>"},"language":[{"iso":"eng"}],"external_id":{"arxiv":["2012.15238"],"isi":["000739446000009"]},"acknowledgement":"J.H. acknowledges partial financial support from ERC Advanced Grant “RMTBeyond” No. 101020331.","publication_identifier":{"issn":["0022-2488"],"eissn":["1089-7658"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"01","doi":"10.1063/5.0051632","publication_status":"published","oa_version":"Preprint","type":"journal_article","isi":1,"status":"public","date_updated":"2025-04-14T07:57:17Z","department":[{"_id":"GradSch"},{"_id":"LaEr"}],"author":[{"first_name":"Sven Joscha","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","orcid":"0000-0003-1106-327X","last_name":"Henheik","full_name":"Henheik, Sven Joscha"},{"last_name":"Teufel","full_name":"Teufel, Stefan","first_name":"Stefan"}],"article_processing_charge":"No"},{"keyword":["computer networks and communications","information systems","software"],"publication":"Acta Informatica","title":"Index appearance record with preorders","article_type":"original","volume":59,"day":"01","publisher":"Springer Nature","_id":"10602","ddc":["000"],"year":"2022","date_published":"2022-10-01T00:00:00Z","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"quality_controlled":"1","abstract":[{"text":"Transforming ω-automata into parity automata is traditionally done using appearance records. We present an efficient variant of this idea, tailored to Rabin automata, and several optimizations applicable to all appearance records. We compare the methods experimentally and show that our method produces significantly smaller automata than previous approaches.","lang":"eng"}],"date_created":"2022-01-06T12:37:27Z","intvolume":"        59","publication_identifier":{"eissn":["1432-0525"],"issn":["0001-5903"]},"external_id":{"isi":["000735765500001"]},"page":"585-618","acknowledgement":"This work is partially funded by the German Research Foundation (DFG) projects Verified Model Checkers (No. 317422601) and Statistical Unbounded Verification (No. 383882557), and the Alexander von Humboldt Foundation with funds from the German Federal Ministry of Education and Research. It is an extended version of [21], including all proofs together with further explanations and examples. Moreover, we provide a new, more efficient construction based on (total) preorders, unifying previous optimizations. Experiments are performed with a new, performant implementation, comparing our approach to the current state of the art.","file":[{"file_id":"10603","date_created":"2022-01-07T07:50:31Z","success":1,"access_level":"open_access","creator":"cchlebak","content_type":"application/pdf","date_updated":"2022-01-07T07:50:31Z","file_name":"2021_ActaInfor_Křetínský.pdf","checksum":"bf1c195b6aaf59e8530cf9e3a9d731f7","relation":"main_file","file_size":1066082}],"month":"10","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file_date_updated":"2022-01-07T07:50:31Z","project":[{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"corr_author":"1","scopus_import":"1","language":[{"iso":"eng"}],"has_accepted_license":"1","citation":{"mla":"Kretinsky, Jan, et al. “Index Appearance Record with Preorders.” <i>Acta Informatica</i>, vol. 59, Springer Nature, 2022, pp. 585–618, doi:<a href=\"https://doi.org/10.1007/s00236-021-00412-y\">10.1007/s00236-021-00412-y</a>.","ista":"Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. 2022. Index appearance record with preorders. Acta Informatica. 59, 585–618.","ieee":"J. Kretinsky, T. Meggendorfer, C. Waldmann, and M. Weininger, “Index appearance record with preorders,” <i>Acta Informatica</i>, vol. 59. Springer Nature, pp. 585–618, 2022.","short":"J. Kretinsky, T. Meggendorfer, C. Waldmann, M. Weininger, Acta Informatica 59 (2022) 585–618.","ama":"Kretinsky J, Meggendorfer T, Waldmann C, Weininger M. Index appearance record with preorders. <i>Acta Informatica</i>. 2022;59:585-618. doi:<a href=\"https://doi.org/10.1007/s00236-021-00412-y\">10.1007/s00236-021-00412-y</a>","chicago":"Kretinsky, Jan, Tobias Meggendorfer, Clara Waldmann, and Maximilian Weininger. “Index Appearance Record with Preorders.” <i>Acta Informatica</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s00236-021-00412-y\">https://doi.org/10.1007/s00236-021-00412-y</a>.","apa":"Kretinsky, J., Meggendorfer, T., Waldmann, C., &#38; Weininger, M. (2022). Index appearance record with preorders. <i>Acta Informatica</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00236-021-00412-y\">https://doi.org/10.1007/s00236-021-00412-y</a>"},"department":[{"_id":"KrCh"}],"date_updated":"2025-04-15T06:53:08Z","author":[{"full_name":"Kretinsky, Jan","last_name":"Kretinsky","first_name":"Jan","id":"44CEF464-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8122-2881"},{"last_name":"Meggendorfer","full_name":"Meggendorfer, Tobias","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","orcid":"0000-0002-1712-2165","first_name":"Tobias"},{"first_name":"Clara","last_name":"Waldmann","full_name":"Waldmann, Clara"},{"first_name":"Maximilian","full_name":"Weininger, Maximilian","last_name":"Weininger"}],"article_processing_charge":"Yes (via OA deal)","oa_version":"Published Version","type":"journal_article","doi":"10.1007/s00236-021-00412-y","publication_status":"published","status":"public","isi":1},{"article_processing_charge":"No","author":[{"last_name":"Turelli","full_name":"Turelli, Michael","first_name":"Michael"},{"full_name":"Barton, Nicholas H","last_name":"Barton","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H"}],"department":[{"_id":"NiBa"}],"date_updated":"2025-06-11T13:45:56Z","status":"public","isi":1,"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.1002/evl3.270","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","publication_identifier":{"eissn":["2056-3744"]},"file":[{"creator":"dernst","content_type":"application/pdf","access_level":"open_access","success":1,"date_created":"2022-07-29T06:59:10Z","file_id":"11689","file_size":2435185,"relation":"main_file","checksum":"7e9a37e3b65b480cd7014a6a4a7e460a","file_name":"2022_EvolutionLetters_Turelli.pdf","date_updated":"2022-07-29T06:59:10Z"}],"related_material":{"record":[{"id":"11686","relation":"research_data","status":"public"}]},"acknowledgement":"We thank S. O'Neill, C. Simmons, and the World Mosquito Project for providing access to unpublished data. S. Ritchie provided valuable insights into Aedes aegypti biology and the literature describing A. aegypti populations near Cairns. We thank B. Cooper for help with the figures and D. Shropshire, S. O'Neill, S. Ritchie, A. Hoffmann, B. Cooper, and members of the Cooper lab for comments on an earlier draft. Comments from three reviewers greatly improved our presentation.","page":"92-105","external_id":{"isi":["000754412600008"],"pmid":["35127140"]},"language":[{"iso":"eng"}],"citation":{"short":"M. Turelli, N.H. Barton, Evolution Letters 6 (2022) 92–105.","ista":"Turelli M, Barton NH. 2022. Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. Evolution Letters. 6(1), 92–105.","ieee":"M. Turelli and N. H. Barton, “Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control,” <i>Evolution Letters</i>, vol. 6, no. 1. Wiley, pp. 92–105, 2022.","mla":"Turelli, Michael, and Nicholas H. Barton. “Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics, and Disease Control.” <i>Evolution Letters</i>, vol. 6, no. 1, Wiley, 2022, pp. 92–105, doi:<a href=\"https://doi.org/10.1002/evl3.270\">10.1002/evl3.270</a>.","apa":"Turelli, M., &#38; Barton, N. H. (2022). Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. <i>Evolution Letters</i>. Wiley. <a href=\"https://doi.org/10.1002/evl3.270\">https://doi.org/10.1002/evl3.270</a>","chicago":"Turelli, Michael, and Nicholas H Barton. “Why Did the Wolbachia Transinfection Cross the Road? Drift, Deterministic Dynamics, and Disease Control.” <i>Evolution Letters</i>. Wiley, 2022. <a href=\"https://doi.org/10.1002/evl3.270\">https://doi.org/10.1002/evl3.270</a>.","ama":"Turelli M, Barton NH. Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control. <i>Evolution Letters</i>. 2022;6(1):92-105. doi:<a href=\"https://doi.org/10.1002/evl3.270\">10.1002/evl3.270</a>"},"has_accepted_license":"1","file_date_updated":"2022-07-29T06:59:10Z","scopus_import":"1","oa":1,"year":"2022","issue":"1","date_published":"2022-02-01T00:00:00Z","quality_controlled":"1","date_created":"2022-01-09T09:45:17Z","intvolume":"         6","abstract":[{"lang":"eng","text":"Maternally inherited Wolbachia transinfections are being introduced into natural mosquito populations to reduce the transmission of dengue, Zika, and other arboviruses. Wolbachia-induced cytoplasmic incompatibility provides a frequency-dependent reproductive advantage to infected females that can spread transinfections within and among populations. However, because transinfections generally reduce host fitness, they tend to spread within populations only after their frequency exceeds a critical threshold. This produces bistability with stable equilibrium frequencies at both 0 and 1, analogous to the bistability produced by underdominance between alleles or karyotypes and by population dynamics under Allee effects. Here, we analyze how stochastic frequency variation produced by finite population size can facilitate the local spread of variants with bistable dynamics into areas where invasion is unexpected from deterministic models. Our exemplar is the establishment of wMel Wolbachia in the Aedes aegypti population of Pyramid Estates (PE), a small community in far north Queensland, Australia. In 2011, wMel was stably introduced into Gordonvale, separated from PE by barriers to A. aegypti dispersal. After nearly 6 years during which wMel was observed only at low frequencies in PE, corresponding to an apparent equilibrium between immigration and selection, wMel rose to fixation by 2018. Using analytic approximations and statistical analyses, we demonstrate that the observed fixation of wMel at PE is consistent with both stochastic transition past an unstable threshold frequency and deterministic transformation produced by steady immigration at a rate just above the threshold required for deterministic invasion. The indeterminacy results from a delicate balance of parameters needed to produce the delayed transition observed. Our analyses suggest that once Wolbachia transinfections are established locally through systematic introductions, stochastic “threshold crossing” is likely to only minimally enhance spatial spread, providing a local ratchet that slightly—but systematically—aids area-wide transformation of disease-vector populations in heterogeneous landscapes."}],"article_type":"original","title":"Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control","volume":6,"keyword":["genetics","ecology","evolution","behavior and systematics"],"publication":"Evolution Letters","pmid":1,"ddc":["570"],"publisher":"Wiley","day":"01","_id":"10604"},{"ddc":["500"],"_id":"10608","publisher":"Springer Nature","day":"01","volume":8,"article_type":"original","title":"Coarse infinite-dimensionality of hyperspaces of finite subsets","publication":"European Journal of Mathematics","intvolume":"         8","abstract":[{"text":"We consider infinite-dimensional properties in coarse geometry for hyperspaces consisting of finite subsets of metric spaces with the Hausdorff metric. We see that several infinite-dimensional properties are preserved by taking the hyperspace of subsets with at most n points. On the other hand, we prove that, if a metric space contains a sequence of long intervals coarsely, then its hyperspace of finite subsets is not coarsely embeddable into any uniformly convex Banach space. As a corollary, the hyperspace of finite subsets of the real line is not coarsely embeddable into any uniformly convex Banach space. It is also shown that every (not necessarily bounded geometry) metric space with straight finite decomposition complexity has metric sparsification property.","lang":"eng"}],"date_created":"2022-01-09T23:01:27Z","quality_controlled":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa":1,"date_published":"2022-03-01T00:00:00Z","year":"2022","issue":"1","citation":{"chicago":"Weighill, Thomas, Takamitsu Yamauchi, and Nicolò Zava. “Coarse Infinite-Dimensionality of Hyperspaces of Finite Subsets.” <i>European Journal of Mathematics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s40879-021-00515-3\">https://doi.org/10.1007/s40879-021-00515-3</a>.","apa":"Weighill, T., Yamauchi, T., &#38; Zava, N. (2022). Coarse infinite-dimensionality of hyperspaces of finite subsets. <i>European Journal of Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40879-021-00515-3\">https://doi.org/10.1007/s40879-021-00515-3</a>","ama":"Weighill T, Yamauchi T, Zava N. Coarse infinite-dimensionality of hyperspaces of finite subsets. <i>European Journal of Mathematics</i>. 2022;8(1):335-355. doi:<a href=\"https://doi.org/10.1007/s40879-021-00515-3\">10.1007/s40879-021-00515-3</a>","mla":"Weighill, Thomas, et al. “Coarse Infinite-Dimensionality of Hyperspaces of Finite Subsets.” <i>European Journal of Mathematics</i>, vol. 8, no. 1, Springer Nature, 2022, pp. 335–55, doi:<a href=\"https://doi.org/10.1007/s40879-021-00515-3\">10.1007/s40879-021-00515-3</a>.","ieee":"T. Weighill, T. Yamauchi, and N. Zava, “Coarse infinite-dimensionality of hyperspaces of finite subsets,” <i>European Journal of Mathematics</i>, vol. 8, no. 1. Springer Nature, pp. 335–355, 2022.","short":"T. Weighill, T. Yamauchi, N. Zava, European Journal of Mathematics 8 (2022) 335–355.","ista":"Weighill T, Yamauchi T, Zava N. 2022. Coarse infinite-dimensionality of hyperspaces of finite subsets. European Journal of Mathematics. 8(1), 335–355."},"has_accepted_license":"1","language":[{"iso":"eng"}],"scopus_import":"1","file_date_updated":"2024-05-22T11:10:10Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","month":"03","file":[{"creator":"kschuh","content_type":"application/pdf","file_id":"17036","date_created":"2024-05-22T11:10:10Z","success":1,"access_level":"open_access","checksum":"ce35cbb2d8c889dc7750719972634ed4","relation":"main_file","file_size":371515,"date_updated":"2024-05-22T11:10:10Z","file_name":"2022_EuJournalMath_Weighill.pdf"}],"page":"335-355","acknowledgement":"We would like to thank the referees for their careful reading and the comments that improved our work. The third named author would like to thank the Division of Mathematics, Physics and Earth Sciences of the Graduate School of Science and Engineering of Ehime University and the second named author for hosting his visit in June 2018. Open access funding provided by Institute of Science and Technology (IST Austria).","publication_identifier":{"issn":["2199-675X"],"eissn":["2199-6768"]},"status":"public","publication_status":"published","doi":"10.1007/s40879-021-00515-3","type":"journal_article","oa_version":"Published Version","article_processing_charge":"Yes (via OA deal)","author":[{"last_name":"Weighill","full_name":"Weighill, Thomas","first_name":"Thomas"},{"first_name":"Takamitsu","full_name":"Yamauchi, Takamitsu","last_name":"Yamauchi"},{"full_name":"Zava, Nicolò","last_name":"Zava","first_name":"Nicolò","id":"c8b3499c-7a77-11eb-b046-aa368cbbf2ad","orcid":"0000-0001-8686-1888"}],"date_updated":"2024-05-22T11:10:22Z","department":[{"_id":"HeEd"}]},{"language":[{"iso":"eng"}],"citation":{"apa":"Windhaber, S., Xin, Q., Uckeley, Z. M., Koch, J., Obr, M., Garnier, C., … Lozach, P.-Y. (2022). The Orthobunyavirus Germiston enters host cells from late endosomes. <i>Journal of Virology</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/jvi.02146-21\">https://doi.org/10.1128/jvi.02146-21</a>","chicago":"Windhaber, Stefan, Qilin Xin, Zina M. Uckeley, Jana Koch, Martin Obr, Céline Garnier, Catherine Luengo-Guyonnot, Maëva Duboeuf, Florian KM Schur, and Pierre-Yves Lozach. “The Orthobunyavirus Germiston Enters Host Cells from Late Endosomes.” <i>Journal of Virology</i>. American Society for Microbiology, 2022. <a href=\"https://doi.org/10.1128/jvi.02146-21\">https://doi.org/10.1128/jvi.02146-21</a>.","ama":"Windhaber S, Xin Q, Uckeley ZM, et al. The Orthobunyavirus Germiston enters host cells from late endosomes. <i>Journal of Virology</i>. 2022;96(5). doi:<a href=\"https://doi.org/10.1128/jvi.02146-21\">10.1128/jvi.02146-21</a>","ieee":"S. Windhaber <i>et al.</i>, “The Orthobunyavirus Germiston enters host cells from late endosomes,” <i>Journal of Virology</i>, vol. 96, no. 5. American Society for Microbiology, 2022.","short":"S. Windhaber, Q. Xin, Z.M. Uckeley, J. Koch, M. Obr, C. Garnier, C. Luengo-Guyonnot, M. Duboeuf, F.K. Schur, P.-Y. Lozach, Journal of Virology 96 (2022).","ista":"Windhaber S, Xin Q, Uckeley ZM, Koch J, Obr M, Garnier C, Luengo-Guyonnot C, Duboeuf M, Schur FK, Lozach P-Y. 2022. The Orthobunyavirus Germiston enters host cells from late endosomes. Journal of Virology. 96(5), e02146-21.","mla":"Windhaber, Stefan, et al. “The Orthobunyavirus Germiston Enters Host Cells from Late Endosomes.” <i>Journal of Virology</i>, vol. 96, no. 5, e02146-21, American Society for Microbiology, 2022, doi:<a href=\"https://doi.org/10.1128/jvi.02146-21\">10.1128/jvi.02146-21</a>."},"article_number":"e02146-21","project":[{"grant_number":"P31445","call_identifier":"FWF","name":"Structural conservation and diversity in retroviral capsid","_id":"26736D6A-B435-11E9-9278-68D0E5697425"}],"scopus_import":"1","month":"03","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_identifier":{"eissn":["1098-5514"],"issn":["0022-538X"]},"acknowledgement":"This work  was  supported  by  INRAE  starter  funds, Project IDEXLYON  (University  of  Lyon) within  the  Programme  Investissements  d’Avenir  (ANR-16-IDEX-0005),  and  FINOVIAO14 (Fondation  pour  l’Université  de  Lyon),  all  to  P.Y.L.  This  work  was  also  supported  by CellNetworks  Research  Group  funds  and  Deutsche  Forschungsgemeinschaft  (DFG)  funding (grant  numbers  LO-2338/1-1  and  LO-2338/3-1)  awarded  to  P.Y.L., Austrian  Science  Fund (FWF)  grant  P31445  to  F.K.M.S., a  Chinese  Scholarship  Council (CSC;no.  201904910701) fellowship  to   Q.X.,  and  a  ministére  de  l’enseignement  supérieur,  de  la  recherche  et  de l’innovation (MESRI) doctoral thesis grant to M.D.","external_id":{"pmid":["35019710"],"isi":["000779305000033"]},"acknowledged_ssus":[{"_id":"EM-Fac"}],"status":"public","isi":1,"type":"journal_article","oa_version":"Published Version","publication_status":"published","doi":"10.1128/jvi.02146-21","article_processing_charge":"No","author":[{"last_name":"Windhaber","full_name":"Windhaber, Stefan","first_name":"Stefan"},{"first_name":"Qilin","full_name":"Xin, Qilin","last_name":"Xin"},{"last_name":"Uckeley","full_name":"Uckeley, Zina M.","first_name":"Zina M."},{"first_name":"Jana","last_name":"Koch","full_name":"Koch, Jana"},{"orcid":"0000-0003-1756-6564","id":"4741CA5A-F248-11E8-B48F-1D18A9856A87","first_name":"Martin","last_name":"Obr","full_name":"Obr, Martin"},{"first_name":"Céline","full_name":"Garnier, Céline","last_name":"Garnier"},{"last_name":"Luengo-Guyonnot","full_name":"Luengo-Guyonnot, Catherine","first_name":"Catherine"},{"full_name":"Duboeuf, Maëva","last_name":"Duboeuf","first_name":"Maëva"},{"full_name":"Schur, Florian KM","last_name":"Schur","first_name":"Florian KM","orcid":"0000-0003-4790-8078","id":"48AD8942-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Lozach, Pierre-Yves","last_name":"Lozach","first_name":"Pierre-Yves"}],"department":[{"_id":"FlSc"}],"date_updated":"2025-04-15T08:24:49Z","pmid":1,"publisher":"American Society for Microbiology","day":"01","_id":"10639","article_type":"original","title":"The Orthobunyavirus Germiston enters host cells from late endosomes","volume":96,"keyword":["virology","insect science","immunology","microbiology"],"publication":"Journal of Virology","quality_controlled":"1","intvolume":"        96","abstract":[{"lang":"eng","text":"With more than 80 members worldwide, the Orthobunyavirus genus in the Peribunyaviridae family is a large genus of enveloped RNA viruses, many of which are emerging pathogens in humans and livestock. How orthobunyaviruses (OBVs) penetrate and infect mammalian host cells remains poorly characterized. Here, we investigated the entry mechanisms of the OBV Germiston (GERV). Viral particles were visualized by cryo-electron microscopy and appeared roughly spherical with an average diameter of 98 nm. Labeling of the virus with fluorescent dyes did not adversely affect its infectivity and allowed the monitoring of single particles in fixed and live cells. Using this approach, we found that endocytic internalization of bound viruses was asynchronous and occurred within 30-40 min. The virus entered Rab5a+ early endosomes and, subsequently, late endosomal vacuoles containing Rab7a but not LAMP-1. Infectious entry did not require proteolytic cleavage, and endosomal acidification was sufficient and necessary for viral fusion. Acid-activated penetration began 15-25 min after initiation of virus internalization and relied on maturation of early endosomes to late endosomes. The optimal pH for viral membrane fusion was slightly below 6.0, and penetration was hampered when the potassium influx was abolished. Overall, our study provides real-time visualization of GERV entry into host cells and demonstrates the importance of late endosomal maturation in facilitating OBV penetration."}],"date_created":"2022-01-18T10:04:18Z","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8906410"}],"oa":1,"year":"2022","issue":"5","date_published":"2022-03-01T00:00:00Z"}]