---
_id: '9101'
abstract:
- lang: eng
  text: 'Behavioral predispositions are innate tendencies of animals to behave in
    a given way without the input of learning. They increase survival chances and,
    due to environmental and ecological challenges, may vary substantially even between
    closely related taxa. These differences are likely to be especially pronounced
    in long-lived species like crocodilians. This order is particularly relevant for
    comparative cognition due to its phylogenetic proximity to birds. Here we compared
    early life behavioral predispositions in two Alligatoridae species. We exposed
    American alligator and spectacled caiman hatchlings to three different novel situations:
    a novel object, a novel environment that was open and a novel environment with
    a shelter. This was then repeated a week later. During exposure to the novel environments,
    alligators moved around more and explored a larger range of the arena than the
    caimans. When exposed to the novel object, the alligators reduced the mean distance
    to the novel object in the second phase, while the caimans further increased it,
    indicating diametrically opposite ontogenetic development in behavioral predispositions.
    Although all crocodilian hatchlings face comparable challenges, e.g., high predation
    pressure, the effectiveness of parental protection might explain the observed
    pattern. American alligators are apex predators capable of protecting their offspring
    against most dangers, whereas adult spectacled caimans are frequently predated
    themselves. Their distancing behavior might be related to increased predator avoidance
    and also explain the success of invasive spectacled caimans in the natural habitats
    of other crocodilians.'
acknowledgement: We thank Jamie Gilks and Terry Miles for their support at Crocodiles
  of the World. We are grateful to the Department of Cognitive Biology, University
  of Vienna for provision of working space and hardware. Finally, we would like to
  thank Cliodhna Quigley, Rachael Harrison and Urs A. Reber for discussion. Open Access
  funding provided by Lund University. This project was funded by the Marietta Blau
  grant (BMFWF) to S. A. R.
article_processing_charge: No
article_type: original
author:
- first_name: Stephan A.
  full_name: Reber, Stephan A.
  last_name: Reber
- first_name: Jinook
  full_name: Oh, Jinook
  id: 403169A4-080F-11EA-9993-BF3F3DDC885E
  last_name: Oh
  orcid: 0000-0001-7425-2372
- first_name: Judith
  full_name: Janisch, Judith
  last_name: Janisch
- first_name: Colin
  full_name: Stevenson, Colin
  last_name: Stevenson
- first_name: Shaun
  full_name: Foggett, Shaun
  last_name: Foggett
- first_name: Anna
  full_name: Wilkinson, Anna
  last_name: Wilkinson
citation:
  ama: Reber SA, Oh J, Janisch J, Stevenson C, Foggett S, Wilkinson A. Early life
    differences in behavioral predispositions in two Alligatoridae species. <i>Animal
    Cognition</i>. 2021;24(4):753-764. doi:<a href="https://doi.org/10.1007/s10071-020-01461-5">10.1007/s10071-020-01461-5</a>
  apa: Reber, S. A., Oh, J., Janisch, J., Stevenson, C., Foggett, S., &#38; Wilkinson,
    A. (2021). Early life differences in behavioral predispositions in two Alligatoridae
    species. <i>Animal Cognition</i>. Springer Nature. <a href="https://doi.org/10.1007/s10071-020-01461-5">https://doi.org/10.1007/s10071-020-01461-5</a>
  chicago: Reber, Stephan A., Jinook Oh, Judith Janisch, Colin Stevenson, Shaun Foggett,
    and Anna Wilkinson. “Early Life Differences in Behavioral Predispositions in Two
    Alligatoridae Species.” <i>Animal Cognition</i>. Springer Nature, 2021. <a href="https://doi.org/10.1007/s10071-020-01461-5">https://doi.org/10.1007/s10071-020-01461-5</a>.
  ieee: S. A. Reber, J. Oh, J. Janisch, C. Stevenson, S. Foggett, and A. Wilkinson,
    “Early life differences in behavioral predispositions in two Alligatoridae species,”
    <i>Animal Cognition</i>, vol. 24, no. 4. Springer Nature, pp. 753–764, 2021.
  ista: Reber SA, Oh J, Janisch J, Stevenson C, Foggett S, Wilkinson A. 2021. Early
    life differences in behavioral predispositions in two Alligatoridae species. Animal
    Cognition. 24(4), 753–764.
  mla: Reber, Stephan A., et al. “Early Life Differences in Behavioral Predispositions
    in Two Alligatoridae Species.” <i>Animal Cognition</i>, vol. 24, no. 4, Springer
    Nature, 2021, pp. 753–64, doi:<a href="https://doi.org/10.1007/s10071-020-01461-5">10.1007/s10071-020-01461-5</a>.
  short: S.A. Reber, J. Oh, J. Janisch, C. Stevenson, S. Foggett, A. Wilkinson, Animal
    Cognition 24 (2021) 753–764.
date_created: 2021-02-07T23:01:13Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2025-06-12T06:34:03Z
day: '01'
ddc:
- '590'
department:
- _id: SyCr
doi: 10.1007/s10071-020-01461-5
external_id:
  isi:
  - '000608382100001'
  pmid:
  - '33454828'
file:
- access_level: open_access
  checksum: d9dfa0d1de6d684692b041d936dd858e
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-09T07:40:14Z
  date_updated: 2021-02-09T07:40:14Z
  file_id: '9107'
  file_name: 2021_AnimalCognition_Reber.pdf
  file_size: 1117991
  relation: main_file
  success: 1
file_date_updated: 2021-02-09T07:40:14Z
has_accepted_license: '1'
intvolume: '        24'
isi: 1
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: 753-764
pmid: 1
publication: Animal Cognition
publication_identifier:
  eissn:
  - 1435-9456
  issn:
  - 1435-9448
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Early life differences in behavioral predispositions in two Alligatoridae species
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2021'
...
---
_id: '9111'
abstract:
- lang: eng
  text: 'We study the probabilistic convergence between the mapper graph and the Reeb
    graph of a topological space X equipped with a continuous function f:X→R. We first
    give a categorification of the mapper graph and the Reeb graph by interpreting
    them in terms of cosheaves and stratified covers of the real line R. We then introduce
    a variant of the classic mapper graph of Singh et al. (in: Eurographics symposium
    on point-based graphics, 2007), referred to as the enhanced mapper graph, and
    demonstrate that such a construction approximates the Reeb graph of (X,f) when
    it is applied to points randomly sampled from a probability density function concentrated
    on (X,f). Our techniques are based on the interleaving distance of constructible
    cosheaves and topological estimation via kernel density estimates. Following Munch
    and Wang (In: 32nd international symposium on computational geometry, volume 51
    of Leibniz international proceedings in informatics (LIPIcs), Dagstuhl, Germany,
    pp 53:1–53:16, 2016), we first show that the mapper graph of (X,f), a constructible
    R-space (with a fixed open cover), approximates the Reeb graph of the same space.
    We then construct an isomorphism between the mapper of (X,f) to the mapper of
    a super-level set of a probability density function concentrated on (X,f). Finally,
    building on the approach of Bobrowski et al. (Bernoulli 23(1):288–328, 2017b),
    we show that, with high probability, we can recover the mapper of the super-level
    set given a sufficiently large sample. Our work is the first to consider the mapper
    construction using the theory of cosheaves in a probabilistic setting. It is part
    of an ongoing effort to combine sheaf theory, probability, and statistics, to
    support topological data analysis with random data.'
acknowledgement: "AB was supported in part by the European Union’s Horizon 2020 research
  and innovation\r\nprogramme under the Marie Sklodowska-Curie GrantAgreement No.
  754411 and NSF IIS-1513616. OB was supported in part by the Israel Science Foundation,
  Grant 1965/19. BW was supported in part by NSF IIS-1513616 and DBI-1661375. EM was
  supported in part by NSF CMMI-1800466, DMS-1800446, and CCF-1907591.We would like
  to thank the Institute for Mathematics and its Applications for hosting a workshop
  titled Bridging Statistics and Sheaves in May 2018, where this work was conceived.\r\nOpen
  Access funding provided by Institute of Science and Technology (IST Austria)."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Adam
  full_name: Brown, Adam
  id: 70B7FDF6-608D-11E9-9333-8535E6697425
  last_name: Brown
- first_name: Omer
  full_name: Bobrowski, Omer
  last_name: Bobrowski
- first_name: Elizabeth
  full_name: Munch, Elizabeth
  last_name: Munch
- first_name: Bei
  full_name: Wang, Bei
  last_name: Wang
citation:
  ama: Brown A, Bobrowski O, Munch E, Wang B. Probabilistic convergence and stability
    of random mapper graphs. <i>Journal of Applied and Computational Topology</i>.
    2021;5(1):99-140. doi:<a href="https://doi.org/10.1007/s41468-020-00063-x">10.1007/s41468-020-00063-x</a>
  apa: Brown, A., Bobrowski, O., Munch, E., &#38; Wang, B. (2021). Probabilistic convergence
    and stability of random mapper graphs. <i>Journal of Applied and Computational
    Topology</i>. Springer Nature. <a href="https://doi.org/10.1007/s41468-020-00063-x">https://doi.org/10.1007/s41468-020-00063-x</a>
  chicago: Brown, Adam, Omer Bobrowski, Elizabeth Munch, and Bei Wang. “Probabilistic
    Convergence and Stability of Random Mapper Graphs.” <i>Journal of Applied and
    Computational Topology</i>. Springer Nature, 2021. <a href="https://doi.org/10.1007/s41468-020-00063-x">https://doi.org/10.1007/s41468-020-00063-x</a>.
  ieee: A. Brown, O. Bobrowski, E. Munch, and B. Wang, “Probabilistic convergence
    and stability of random mapper graphs,” <i>Journal of Applied and Computational
    Topology</i>, vol. 5, no. 1. Springer Nature, pp. 99–140, 2021.
  ista: Brown A, Bobrowski O, Munch E, Wang B. 2021. Probabilistic convergence and
    stability of random mapper graphs. Journal of Applied and Computational Topology.
    5(1), 99–140.
  mla: Brown, Adam, et al. “Probabilistic Convergence and Stability of Random Mapper
    Graphs.” <i>Journal of Applied and Computational Topology</i>, vol. 5, no. 1,
    Springer Nature, 2021, pp. 99–140, doi:<a href="https://doi.org/10.1007/s41468-020-00063-x">10.1007/s41468-020-00063-x</a>.
  short: A. Brown, O. Bobrowski, E. Munch, B. Wang, Journal of Applied and Computational
    Topology 5 (2021) 99–140.
date_created: 2021-02-11T14:41:02Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2025-04-14T07:43:51Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s41468-020-00063-x
ec_funded: 1
external_id:
  arxiv:
  - '1909.03488'
file:
- access_level: open_access
  checksum: 3f02e9d47c428484733da0f588a3c069
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-11T14:43:59Z
  date_updated: 2021-02-11T14:43:59Z
  file_id: '9112'
  file_name: 2020_JourApplCompTopology_Brown.pdf
  file_size: 2090265
  relation: main_file
  success: 1
file_date_updated: 2021-02-11T14:43:59Z
has_accepted_license: '1'
intvolume: '         5'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 99-140
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Journal of Applied and Computational Topology
publication_identifier:
  eissn:
  - 2367-1734
  issn:
  - 2367-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Probabilistic convergence and stability of random mapper graphs
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 5
year: '2021'
...
---
_id: '9113'
abstract:
- lang: eng
  text: “Hydrogen economy” could enable a carbon-neutral sustainable energy chain.
    However, issues with safety, storage, and transport of molecular hydrogen impede
    its realization. Alcohols as liquid H2 carriers could be enablers, but state-of-the-art
    reforming is difficult, requiring high temperatures >200 °C and pressures >25
    bar, and the resulting H2 is carbonized beyond tolerance levels for direct use
    in fuel cells. Here, we demonstrate ambient temperature and pressure alcohol reforming
    in a fuel cell (ARFC) with a simultaneous electrical power output. The alcohol
    is oxidized at the alkaline anode, where the resulting CO2 is sequestrated as
    carbonate. Carbon-free H2 is liberated at the acidic cathode. The neutralization
    energy between the alkaline anode and the acidic cathode drives the process, particularly
    the unusually high entropy gain (1.27-fold ΔH). The significantly positive temperature
    coefficient of the resulting electromotive force allows us to harvest a large
    fraction of the output energy from the surrounding, achieving a thermodynamic
    efficiency as high as 2.27. MoS2 as the cathode catalyst allows alcohol reforming
    even under open-air conditions, a challenge that state-of-the-art alcohol reforming
    failed to overcome. We further show reforming of a wide range of alcohols. The
    ARFC offers an unprecedented route toward hydrogen economy as CO2 is simultaneously
    captured and pure H2 produced at mild conditions.
acknowledgement: M.O.T. acknowledges DST/TMD/HFC/2 K18/58, DST-SERB, MHRD fast track,
  and DST Nanomission forfinancialassistance. Z.M.B. acknowledges CSIR-SRF fellowship
  fromMHRD, India. S.A.F. acknowledges support from IST Austria.
article_processing_charge: No
article_type: original
author:
- first_name: Zahid Manzoor
  full_name: Manzoor Bhat, Zahid Manzoor
  last_name: Manzoor Bhat
- first_name: Ravikumar
  full_name: Thimmappa, Ravikumar
  last_name: Thimmappa
- first_name: 'Neethu Christudas '
  full_name: 'Dargily, Neethu Christudas '
  last_name: Dargily
- first_name: 'Abdul '
  full_name: 'Raafik, Abdul '
  last_name: Raafik
- first_name: 'Alagar Raja '
  full_name: 'Kottaichamy, Alagar Raja '
  last_name: Kottaichamy
- first_name: 'Mruthyunjayachari Chattanahalli '
  full_name: 'Devendrachari, Mruthyunjayachari Chattanahalli '
  last_name: Devendrachari
- first_name: Mahesh
  full_name: Itagi, Mahesh
  last_name: Itagi
- first_name: Harish
  full_name: ' Makri Nimbegondi Kotresh, Harish'
  last_name: ' Makri Nimbegondi Kotresh'
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: 'Musthafa '
  full_name: 'Ottakam Thotiyl, Musthafa '
  last_name: Ottakam Thotiyl
citation:
  ama: Manzoor Bhat ZM, Thimmappa R, Dargily NC, et al. Ambient condition alcohol
    reforming to hydrogen with electricity output. <i>ACS Sustainable Chemistry and
    Engineering</i>. 2021;9(8):3104-3111. doi:<a href="https://doi.org/10.1021/acssuschemeng.0c07547">10.1021/acssuschemeng.0c07547</a>
  apa: Manzoor Bhat, Z. M., Thimmappa, R., Dargily, N. C., Raafik, A., Kottaichamy,
    A. R., Devendrachari, M. C., … Ottakam Thotiyl, M. (2021). Ambient condition alcohol
    reforming to hydrogen with electricity output. <i>ACS Sustainable Chemistry and
    Engineering</i>. American Chemical Society. <a href="https://doi.org/10.1021/acssuschemeng.0c07547">https://doi.org/10.1021/acssuschemeng.0c07547</a>
  chicago: Manzoor Bhat, Zahid Manzoor, Ravikumar Thimmappa, Neethu Christudas  Dargily,
    Abdul  Raafik, Alagar Raja  Kottaichamy, Mruthyunjayachari Chattanahalli  Devendrachari,
    Mahesh Itagi, Harish  Makri Nimbegondi Kotresh, Stefan Alexander Freunberger,
    and Musthafa  Ottakam Thotiyl. “Ambient Condition Alcohol Reforming to Hydrogen
    with Electricity Output.” <i>ACS Sustainable Chemistry and Engineering</i>. American
    Chemical Society, 2021. <a href="https://doi.org/10.1021/acssuschemeng.0c07547">https://doi.org/10.1021/acssuschemeng.0c07547</a>.
  ieee: Z. M. Manzoor Bhat <i>et al.</i>, “Ambient condition alcohol reforming to
    hydrogen with electricity output,” <i>ACS Sustainable Chemistry and Engineering</i>,
    vol. 9, no. 8. American Chemical Society, pp. 3104–3111, 2021.
  ista: Manzoor Bhat ZM, Thimmappa R, Dargily NC, Raafik A, Kottaichamy AR, Devendrachari
    MC, Itagi M,  Makri Nimbegondi Kotresh H, Freunberger SA, Ottakam Thotiyl M. 2021.
    Ambient condition alcohol reforming to hydrogen with electricity output. ACS Sustainable
    Chemistry and Engineering. 9(8), 3104–3111.
  mla: Manzoor Bhat, Zahid Manzoor, et al. “Ambient Condition Alcohol Reforming to
    Hydrogen with Electricity Output.” <i>ACS Sustainable Chemistry and Engineering</i>,
    vol. 9, no. 8, American Chemical Society, 2021, pp. 3104–11, doi:<a href="https://doi.org/10.1021/acssuschemeng.0c07547">10.1021/acssuschemeng.0c07547</a>.
  short: Z.M. Manzoor Bhat, R. Thimmappa, N.C. Dargily, A. Raafik, A.R. Kottaichamy,
    M.C. Devendrachari, M. Itagi, H.  Makri Nimbegondi Kotresh, S.A. Freunberger,
    M. Ottakam Thotiyl, ACS Sustainable Chemistry and Engineering 9 (2021) 3104–3111.
corr_author: '1'
date_created: 2021-02-12T09:20:18Z
date_published: 2021-02-11T00:00:00Z
date_updated: 2024-10-09T21:00:24Z
day: '11'
department:
- _id: StFr
doi: 10.1021/acssuschemeng.0c07547
external_id:
  isi:
  - '000625460400010'
intvolume: '         9'
isi: 1
issue: '8'
language:
- iso: eng
month: '02'
oa_version: None
page: 3104-3111
publication: ACS Sustainable Chemistry and Engineering
publication_identifier:
  eissn:
  - 2168-0485
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ambient condition alcohol reforming to hydrogen with electricity output
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2021'
...
---
_id: '9119'
abstract:
- lang: eng
  text: 'We present DILS, a deployable statistical analysis platform for conducting
    demographic inferences with linked selection from population genomic data using
    an Approximate Bayesian Computation framework. DILS takes as input single‐population
    or two‐population data sets (multilocus fasta sequences) and performs three types
    of analyses in a hierarchical manner, identifying: (a) the best demographic model
    to study the importance of gene flow and population size change on the genetic
    patterns of polymorphism and divergence, (b) the best genomic model to determine
    whether the effective size Ne and migration rate N, m are heterogeneously distributed
    along the genome (implying linked selection) and (c) loci in genomic regions most
    associated with barriers to gene flow. Also available via a Web interface, an
    objective of DILS is to facilitate collaborative research in speciation genomics.
    Here, we show the performance and limitations of DILS by using simulations and
    finally apply the method to published data on a divergence continuum composed
    by 28 pairs of Mytilus mussel populations/species.'
article_processing_charge: No
article_type: original
author:
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: Iva
  full_name: Popovic, Iva
  last_name: Popovic
- first_name: Clément
  full_name: Mazoyer, Clément
  last_name: Mazoyer
- first_name: Bruno
  full_name: Spataro, Bruno
  last_name: Spataro
- first_name: Stéphane
  full_name: Delmotte, Stéphane
  last_name: Delmotte
- first_name: Jonathan
  full_name: Romiguier, Jonathan
  last_name: Romiguier
- first_name: Étienne
  full_name: Loire, Étienne
  last_name: Loire
- first_name: Alexis
  full_name: Simon, Alexis
  last_name: Simon
- first_name: Nicolas
  full_name: Galtier, Nicolas
  last_name: Galtier
- first_name: Laurent
  full_name: Duret, Laurent
  last_name: Duret
- first_name: Nicolas
  full_name: Bierne, Nicolas
  last_name: Bierne
- first_name: Xavier
  full_name: Vekemans, Xavier
  last_name: Vekemans
- first_name: Camille
  full_name: Roux, Camille
  last_name: Roux
citation:
  ama: 'Fraisse C, Popovic I, Mazoyer C, et al. DILS: Demographic inferences with
    linked selection by using ABC. <i>Molecular Ecology Resources</i>. 2021;21:2629-2644.
    doi:<a href="https://doi.org/10.1111/1755-0998.13323">10.1111/1755-0998.13323</a>'
  apa: 'Fraisse, C., Popovic, I., Mazoyer, C., Spataro, B., Delmotte, S., Romiguier,
    J., … Roux, C. (2021). DILS: Demographic inferences with linked selection by using
    ABC. <i>Molecular Ecology Resources</i>. Wiley. <a href="https://doi.org/10.1111/1755-0998.13323">https://doi.org/10.1111/1755-0998.13323</a>'
  chicago: 'Fraisse, Christelle, Iva Popovic, Clément Mazoyer, Bruno Spataro, Stéphane
    Delmotte, Jonathan Romiguier, Étienne Loire, et al. “DILS: Demographic Inferences
    with Linked Selection by Using ABC.” <i>Molecular Ecology Resources</i>. Wiley,
    2021. <a href="https://doi.org/10.1111/1755-0998.13323">https://doi.org/10.1111/1755-0998.13323</a>.'
  ieee: 'C. Fraisse <i>et al.</i>, “DILS: Demographic inferences with linked selection
    by using ABC,” <i>Molecular Ecology Resources</i>, vol. 21. Wiley, pp. 2629–2644,
    2021.'
  ista: 'Fraisse C, Popovic I, Mazoyer C, Spataro B, Delmotte S, Romiguier J, Loire
    É, Simon A, Galtier N, Duret L, Bierne N, Vekemans X, Roux C. 2021. DILS: Demographic
    inferences with linked selection by using ABC. Molecular Ecology Resources. 21,
    2629–2644.'
  mla: 'Fraisse, Christelle, et al. “DILS: Demographic Inferences with Linked Selection
    by Using ABC.” <i>Molecular Ecology Resources</i>, vol. 21, Wiley, 2021, pp. 2629–44,
    doi:<a href="https://doi.org/10.1111/1755-0998.13323">10.1111/1755-0998.13323</a>.'
  short: C. Fraisse, I. Popovic, C. Mazoyer, B. Spataro, S. Delmotte, J. Romiguier,
    É. Loire, A. Simon, N. Galtier, L. Duret, N. Bierne, X. Vekemans, C. Roux, Molecular
    Ecology Resources 21 (2021) 2629–2644.
corr_author: '1'
date_created: 2021-02-14T23:01:14Z
date_published: 2021-01-15T00:00:00Z
date_updated: 2025-06-12T06:34:23Z
day: '15'
department:
- _id: NiBa
doi: 10.1111/1755-0998.13323
external_id:
  isi:
  - '000614183100001'
  pmid:
  - '33448666'
intvolume: '        21'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.biorxiv.org/content/10.1101/2020.06.15.151597v2
month: '01'
oa: 1
oa_version: Preprint
page: 2629-2644
pmid: 1
publication: Molecular Ecology Resources
publication_identifier:
  eissn:
  - 1755-0998
  issn:
  - 1755-098X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'DILS: Demographic inferences with linked selection by using ABC'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2021'
...
---
_id: '9158'
abstract:
- lang: eng
  text: While several tools have been developed to study the ground state of many-body
    quantum spin systems, the limitations of existing techniques call for the exploration
    of new approaches. In this manuscript we develop an alternative analytical and
    numerical framework for many-body quantum spin ground states, based on the disentanglement
    formalism. In this approach, observables are exactly expressed as Gaussian-weighted
    functional integrals over scalar fields. We identify the leading contribution
    to these integrals, given by the saddle point of a suitable effective action.
    Analytically, we develop a field-theoretical expansion of the functional integrals,
    performed by means of appropriate Feynman rules. The expansion can be truncated
    to a desired order to obtain analytical approximations to observables. Numerically,
    we show that the disentanglement approach can be used to compute ground state
    expectation values from classical stochastic processes. While the associated fluctuations
    grow exponentially with imaginary time and the system size, this growth can be
    mitigated by means of an importance sampling scheme based on knowledge of the
    saddle point configuration. We illustrate the advantages and limitations of our
    methods by considering the quantum Ising model in 1, 2 and 3 spatial dimensions.
    Our analytical and numerical approaches are applicable to a broad class of systems,
    bridging concepts from quantum lattice models, continuum field theory, and classical
    stochastic processes.
acknowledgement: "S D N would like to thank M J Bhaseen, J Chalker, B Doyon, V Gritsev,
  A Lamacraft,\r\nA Michailidis and M Serbyn for helpful feedback and stimulating
  conversations. S D N\r\nacknowledges funding from the Institute of Science and Technology
  (IST) Austria, and\r\nfrom the European Union’s Horizon 2020 research and innovation
  program under the\r\nMarie Sk\blodowska-Curie Grant Agreement No. 754411. S D N
  also acknowledges funding\r\nfrom the EPSRC Center for Doctoral Training in Cross-Disciplinary
  Approaches to Non-\r\nEquilibrium Systems (CANES) under Grant EP/L015854/1. S D
  N is grateful to IST\r\nAustria for providing open access funding."
article_number: '013101'
article_processing_charge: No
article_type: original
author:
- first_name: Stefano
  full_name: De Nicola, Stefano
  id: 42832B76-F248-11E8-B48F-1D18A9856A87
  last_name: De Nicola
  orcid: 0000-0002-4842-6671
citation:
  ama: 'De Nicola S. Disentanglement approach to quantum spin ground states: Field
    theory and stochastic simulation. <i>Journal of Statistical Mechanics: Theory
    and Experiment</i>. 2021;2021(1). doi:<a href="https://doi.org/10.1088/1742-5468/abc7c7">10.1088/1742-5468/abc7c7</a>'
  apa: 'De Nicola, S. (2021). Disentanglement approach to quantum spin ground states:
    Field theory and stochastic simulation. <i>Journal of Statistical Mechanics: Theory
    and Experiment</i>. IOP Publishing. <a href="https://doi.org/10.1088/1742-5468/abc7c7">https://doi.org/10.1088/1742-5468/abc7c7</a>'
  chicago: 'De Nicola, Stefano. “Disentanglement Approach to Quantum Spin Ground States:
    Field Theory and Stochastic Simulation.” <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>. IOP Publishing, 2021. <a href="https://doi.org/10.1088/1742-5468/abc7c7">https://doi.org/10.1088/1742-5468/abc7c7</a>.'
  ieee: 'S. De Nicola, “Disentanglement approach to quantum spin ground states: Field
    theory and stochastic simulation,” <i>Journal of Statistical Mechanics: Theory
    and Experiment</i>, vol. 2021, no. 1. IOP Publishing, 2021.'
  ista: 'De Nicola S. 2021. Disentanglement approach to quantum spin ground states:
    Field theory and stochastic simulation. Journal of Statistical Mechanics: Theory
    and Experiment. 2021(1), 013101.'
  mla: 'De Nicola, Stefano. “Disentanglement Approach to Quantum Spin Ground States:
    Field Theory and Stochastic Simulation.” <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>, vol. 2021, no. 1, 013101, IOP Publishing, 2021, doi:<a
    href="https://doi.org/10.1088/1742-5468/abc7c7">10.1088/1742-5468/abc7c7</a>.'
  short: 'S. De Nicola, Journal of Statistical Mechanics: Theory and Experiment 2021
    (2021).'
date_created: 2021-02-17T17:48:46Z
date_published: 2021-01-05T00:00:00Z
date_updated: 2025-04-14T07:43:51Z
day: '05'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1088/1742-5468/abc7c7
ec_funded: 1
external_id:
  isi:
  - '000605080300001'
file:
- access_level: open_access
  checksum: 64e2aae4837790db26e1dd1986c69c07
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-19T14:04:40Z
  date_updated: 2021-02-19T14:04:40Z
  file_id: '9172'
  file_name: 2021_JourStatMech_deNicola.pdf
  file_size: 1693609
  relation: main_file
  success: 1
file_date_updated: 2021-02-19T14:04:40Z
has_accepted_license: '1'
intvolume: '      2021'
isi: 1
issue: '1'
keyword:
- Statistics
- Probability and Uncertainty
- Statistics and Probability
- Statistical and Nonlinear Physics
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: 'Journal of Statistical Mechanics: Theory and Experiment'
publication_identifier:
  issn:
  - 1742-5468
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Disentanglement approach to quantum spin ground states: Field theory and stochastic
  simulation'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 2021
year: '2021'
...
---
_id: '9173'
abstract:
- lang: eng
  text: We show that Hilbert schemes of points on supersingular Enriques surface in
    characteristic 2, Hilbn(X), for n ≥ 2 are simply connected, symplectic varieties
    but are not irreducible symplectic as the hodge number h2,0 > 1, even though a
    supersingular Enriques surface is an irreducible symplectic variety. These are
    the classes of varieties which appear only in characteristic 2 and they show that
    the hodge number formula for G¨ottsche-Soergel does not hold over haracteristic
    2. It also gives examples of varieties with trivial canonical class which are
    neither irreducible symplectic nor Calabi-Yau, thereby showing that there are
    strictly more classes of simply connected varieties with trivial canonical class
    in characteristic 2 than over C as given by Beauville-Bogolomov decomposition
    theorem.
acknowledgement: I would like to thank M. Zdanwociz for various mathematical discussions
  which lead to this article, Tamas Hausel for hosting me in his research group at
  IST Austria and the anonymous referee for their helpful suggestions and comments.
  This research has received funding from the European Union's Horizon 2020 Marie
  Sklodowska-Curie Actions Grant No. 754411 and Institue of Science and Technology
  Austria IST-PLUS Grant No. 754411.
article_number: '102957'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Tanya K
  full_name: Srivastava, Tanya K
  id: 4D046628-F248-11E8-B48F-1D18A9856A87
  last_name: Srivastava
citation:
  ama: Srivastava TK. Pathologies of the Hilbert scheme of points of a supersingular
    Enriques surface. <i>Bulletin des Sciences Mathematiques</i>. 2021;167(03). doi:<a
    href="https://doi.org/10.1016/j.bulsci.2021.102957">10.1016/j.bulsci.2021.102957</a>
  apa: Srivastava, T. K. (2021). Pathologies of the Hilbert scheme of points of a
    supersingular Enriques surface. <i>Bulletin Des Sciences Mathematiques</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.bulsci.2021.102957">https://doi.org/10.1016/j.bulsci.2021.102957</a>
  chicago: Srivastava, Tanya K. “Pathologies of the Hilbert Scheme of Points of a
    Supersingular Enriques Surface.” <i>Bulletin Des Sciences Mathematiques</i>. Elsevier,
    2021. <a href="https://doi.org/10.1016/j.bulsci.2021.102957">https://doi.org/10.1016/j.bulsci.2021.102957</a>.
  ieee: T. K. Srivastava, “Pathologies of the Hilbert scheme of points of a supersingular
    Enriques surface,” <i>Bulletin des Sciences Mathematiques</i>, vol. 167, no. 03.
    Elsevier, 2021.
  ista: Srivastava TK. 2021. Pathologies of the Hilbert scheme of points of a supersingular
    Enriques surface. Bulletin des Sciences Mathematiques. 167(03), 102957.
  mla: Srivastava, Tanya K. “Pathologies of the Hilbert Scheme of Points of a Supersingular
    Enriques Surface.” <i>Bulletin Des Sciences Mathematiques</i>, vol. 167, no. 03,
    102957, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.bulsci.2021.102957">10.1016/j.bulsci.2021.102957</a>.
  short: T.K. Srivastava, Bulletin Des Sciences Mathematiques 167 (2021).
date_created: 2021-02-21T23:01:20Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2025-04-14T07:43:51Z
day: '01'
department:
- _id: TaHa
doi: 10.1016/j.bulsci.2021.102957
ec_funded: 1
external_id:
  arxiv:
  - '2010.08976'
  isi:
  - '000623881600009'
intvolume: '       167'
isi: 1
issue: '03'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2010.08976
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Bulletin des Sciences Mathematiques
publication_identifier:
  issn:
  - 0007-4497
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Pathologies of the Hilbert scheme of points of a supersingular Enriques surface
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 167
year: '2021'
...
---
_id: '9188'
abstract:
- lang: eng
  text: Genomic imprinting is an epigenetic mechanism that results in parental allele-specific
    expression of ~1% of all genes in mouse and human. Imprinted genes are key developmental
    regulators and play pivotal roles in many biological processes such as nutrient
    transfer from the mother to offspring and neuronal development. Imprinted genes
    are also involved in human disease, including neurodevelopmental disorders, and
    often occur in clusters that are regulated by a common imprint control region
    (ICR). In extra-embryonic tissues ICRs can act over large distances, with the
    largest surrounding Igf2r spanning over 10 million base-pairs. Besides classical
    imprinted expression that shows near exclusive maternal or paternal expression,
    widespread biased imprinted expression has been identified mainly in brain. In
    this review we discuss recent developments mapping cell type specific imprinted
    expression in extra-embryonic tissues and neocortex in the mouse. We highlight
    the advantages of using an inducible uniparental chromosome disomy (UPD) system
    to generate cells carrying either two maternal or two paternal copies of a specific
    chromosome to analyze the functional consequences of genomic imprinting. Mosaic
    Analysis with Double Markers (MADM) allows fluorescent labeling and concomitant
    induction of UPD sparsely in specific cell types, and thus to over-express or
    suppress all imprinted genes on that chromosome. To illustrate the utility of
    this technique, we explain how MADM-induced UPD revealed new insights about the
    function of the well-studied Cdkn1c imprinted gene, and how MADM-induced UPDs
    led to identification of highly cell type specific phenotypes related to perturbed
    imprinted expression in the mouse neocortex. Finally, we give an outlook on how
    MADM could be used to probe cell type specific imprinted expression in other tissues
    in mouse, particularly in extra-embryonic tissues.
acknowledgement: We thank Melissa Stouffer for critically reading the manuscript.
  This work was supported by IST Austria institutional funds; NÖ Forschung und Bildung
  n[f + b] life science call grant (C13-002) to S.H. and the European Research Council
  (ERC) under the European Union's Horizon 2020 research and innovation program (grant
  agreement 725780 LinPro) to S.H.
article_number: '104986'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
  orcid: 0000-0002-7462-0048
- first_name: Quanah
  full_name: Hudson, Quanah
  last_name: Hudson
- first_name: Susanne
  full_name: Laukoter, Susanne
  id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
  last_name: Laukoter
  orcid: 0000-0002-7903-3010
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Pauler F, Hudson Q, Laukoter S, Hippenmeyer S. Inducible uniparental chromosome
    disomy to probe genomic imprinting at single-cell level in brain and beyond. <i>Neurochemistry
    International</i>. 2021;145(5). doi:<a href="https://doi.org/10.1016/j.neuint.2021.104986">10.1016/j.neuint.2021.104986</a>
  apa: Pauler, F., Hudson, Q., Laukoter, S., &#38; Hippenmeyer, S. (2021). Inducible
    uniparental chromosome disomy to probe genomic imprinting at single-cell level
    in brain and beyond. <i>Neurochemistry International</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuint.2021.104986">https://doi.org/10.1016/j.neuint.2021.104986</a>
  chicago: Pauler, Florian, Quanah Hudson, Susanne Laukoter, and Simon Hippenmeyer.
    “Inducible Uniparental Chromosome Disomy to Probe Genomic Imprinting at Single-Cell
    Level in Brain and Beyond.” <i>Neurochemistry International</i>. Elsevier, 2021.
    <a href="https://doi.org/10.1016/j.neuint.2021.104986">https://doi.org/10.1016/j.neuint.2021.104986</a>.
  ieee: F. Pauler, Q. Hudson, S. Laukoter, and S. Hippenmeyer, “Inducible uniparental
    chromosome disomy to probe genomic imprinting at single-cell level in brain and
    beyond,” <i>Neurochemistry International</i>, vol. 145, no. 5. Elsevier, 2021.
  ista: Pauler F, Hudson Q, Laukoter S, Hippenmeyer S. 2021. Inducible uniparental
    chromosome disomy to probe genomic imprinting at single-cell level in brain and
    beyond. Neurochemistry International. 145(5), 104986.
  mla: Pauler, Florian, et al. “Inducible Uniparental Chromosome Disomy to Probe Genomic
    Imprinting at Single-Cell Level in Brain and Beyond.” <i>Neurochemistry International</i>,
    vol. 145, no. 5, 104986, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.neuint.2021.104986">10.1016/j.neuint.2021.104986</a>.
  short: F. Pauler, Q. Hudson, S. Laukoter, S. Hippenmeyer, Neurochemistry International
    145 (2021).
date_created: 2021-02-23T12:31:43Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2025-04-14T07:43:04Z
day: '01'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.neuint.2021.104986
ec_funded: 1
external_id:
  isi:
  - '000635575000005'
  pmid:
  - '33600873'
file:
- access_level: open_access
  checksum: c6d7a40089cd29e289f9b22e75768304
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-08-11T12:30:38Z
  date_updated: 2021-08-11T12:30:38Z
  file_id: '9883'
  file_name: 2021_NCI_Pauler.pdf
  file_size: 7083499
  relation: main_file
  success: 1
file_date_updated: 2021-08-11T12:30:38Z
has_accepted_license: '1'
intvolume: '       145'
isi: 1
issue: '5'
keyword:
- Cell Biology
- Cellular and Molecular Neuroscience
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 25D92700-B435-11E9-9278-68D0E5697425
  grant_number: LS13-002
  name: Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain
publication: Neurochemistry International
publication_identifier:
  issn:
  - 0197-0186
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Inducible uniparental chromosome disomy to probe genomic imprinting at single-cell
  level in brain and beyond
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 145
year: '2021'
...
---
_id: '9189'
abstract:
- lang: eng
  text: Transposable elements exist widely throughout plant genomes and play important
    roles in plant evolution. Auxin is an important regulator that is traditionally
    associated with root development and drought stress adaptation. The DEEPER ROOTING
    1 (DRO1) gene is a key component of rice drought avoidance. Here, we identified
    a transposon that acts as an autonomous auxin‐responsive promoter and its presence
    at specific genome positions conveys physiological adaptations related to drought
    avoidance. Rice varieties with high and auxin‐mediated transcription of DRO1 in
    the root tip show deeper and longer root phenotypes and are thus better adapted
    to drought. The INDITTO2 transposon contains an auxin response element and displays
    auxin‐responsive promoter activity; it is thus able to convey auxin regulation
    of transcription to genes in its proximity. In the rice Acuce, which displays
    DRO1‐mediated drought adaptation, the INDITTO2 transposon was found to be inserted
    at the promoter region of the DRO1 locus. Transgenesis‐based insertion of the
    INDITTO2 transposon into the DRO1 promoter of the non‐adapted rice variety Nipponbare
    was sufficient to promote its drought avoidance. Our data identify an example
    of how transposons can act as promoters and convey hormonal regulation to nearby
    loci, improving plant fitness in response to different abiotic stresses.
article_processing_charge: No
article_type: original
author:
- first_name: Y
  full_name: Zhao, Y
  last_name: Zhao
- first_name: L
  full_name: Wu, L
  last_name: Wu
- first_name: Q
  full_name: Fu, Q
  last_name: Fu
- first_name: D
  full_name: Wang, D
  last_name: Wang
- first_name: J
  full_name: Li, J
  last_name: Li
- first_name: B
  full_name: Yao, B
  last_name: Yao
- first_name: S
  full_name: Yu, S
  last_name: Yu
- first_name: L
  full_name: Jiang, L
  last_name: Jiang
- first_name: J
  full_name: Qian, J
  last_name: Qian
- first_name: X
  full_name: Zhou, X
  last_name: Zhou
- first_name: L
  full_name: Han, L
  last_name: Han
- first_name: S
  full_name: Zhao, S
  last_name: Zhao
- first_name: C
  full_name: Ma, C
  last_name: Ma
- first_name: Y
  full_name: Zhang, Y
  last_name: Zhang
- first_name: C
  full_name: Luo, C
  last_name: Luo
- first_name: Q
  full_name: Dong, Q
  last_name: Dong
- first_name: S
  full_name: Li, S
  last_name: Li
- first_name: L
  full_name: Zhang, L
  last_name: Zhang
- first_name: X
  full_name: Jiang, X
  last_name: Jiang
- first_name: Y
  full_name: Li, Y
  last_name: Li
- first_name: H
  full_name: Luo, H
  last_name: Luo
- first_name: K
  full_name: Li, K
  last_name: Li
- first_name: J
  full_name: Yang, J
  last_name: Yang
- first_name: Q
  full_name: Luo, Q
  last_name: Luo
- first_name: L
  full_name: Li, L
  last_name: Li
- first_name: S
  full_name: Peng, S
  last_name: Peng
- first_name: H
  full_name: Huang, H
  last_name: Huang
- first_name: Z
  full_name: Zuo, Z
  last_name: Zuo
- first_name: C
  full_name: Liu, C
  last_name: Liu
- first_name: L
  full_name: Wang, L
  last_name: Wang
- first_name: C
  full_name: Li, C
  last_name: Li
- first_name: X
  full_name: He, X
  last_name: He
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Y
  full_name: Du, Y
  last_name: Du
citation:
  ama: Zhao Y, Wu L, Fu Q, et al. INDITTO2 transposon conveys auxin-mediated DRO1
    transcription for rice drought avoidance. <i>Plant, Cell &#38; Environment</i>.
    2021;44(6):1846-1857. doi:<a href="https://doi.org/10.1111/pce.14029">10.1111/pce.14029</a>
  apa: Zhao, Y., Wu, L., Fu, Q., Wang, D., Li, J., Yao, B., … Du, Y. (2021). INDITTO2
    transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance.
    <i>Plant, Cell &#38; Environment</i>. Wiley. <a href="https://doi.org/10.1111/pce.14029">https://doi.org/10.1111/pce.14029</a>
  chicago: Zhao, Y, L Wu, Q Fu, D Wang, J Li, B Yao, S Yu, et al. “INDITTO2 Transposon
    Conveys Auxin-Mediated DRO1 Transcription for Rice Drought Avoidance.” <i>Plant,
    Cell &#38; Environment</i>. Wiley, 2021. <a href="https://doi.org/10.1111/pce.14029">https://doi.org/10.1111/pce.14029</a>.
  ieee: Y. Zhao <i>et al.</i>, “INDITTO2 transposon conveys auxin-mediated DRO1 transcription
    for rice drought avoidance,” <i>Plant, Cell &#38; Environment</i>, vol. 44, no.
    6. Wiley, pp. 1846–1857, 2021.
  ista: Zhao Y, Wu L, Fu Q, Wang D, Li J, Yao B, Yu S, Jiang L, Qian J, Zhou X, Han
    L, Zhao S, Ma C, Zhang Y, Luo C, Dong Q, Li S, Zhang L, Jiang X, Li Y, Luo H,
    Li K, Yang J, Luo Q, Li L, Peng S, Huang H, Zuo Z, Liu C, Wang L, Li C, He X,
    Friml J, Du Y. 2021. INDITTO2 transposon conveys auxin-mediated DRO1 transcription
    for rice drought avoidance. Plant, Cell &#38; Environment. 44(6), 1846–1857.
  mla: Zhao, Y., et al. “INDITTO2 Transposon Conveys Auxin-Mediated DRO1 Transcription
    for Rice Drought Avoidance.” <i>Plant, Cell &#38; Environment</i>, vol. 44, no.
    6, Wiley, 2021, pp. 1846–57, doi:<a href="https://doi.org/10.1111/pce.14029">10.1111/pce.14029</a>.
  short: Y. Zhao, L. Wu, Q. Fu, D. Wang, J. Li, B. Yao, S. Yu, L. Jiang, J. Qian,
    X. Zhou, L. Han, S. Zhao, C. Ma, Y. Zhang, C. Luo, Q. Dong, S. Li, L. Zhang, X.
    Jiang, Y. Li, H. Luo, K. Li, J. Yang, Q. Luo, L. Li, S. Peng, H. Huang, Z. Zuo,
    C. Liu, L. Wang, C. Li, X. He, J. Friml, Y. Du, Plant, Cell &#38; Environment
    44 (2021) 1846–1857.
date_created: 2021-02-24T10:07:21Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2023-11-07T08:18:36Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/pce.14029
external_id:
  isi:
  - '000625398600001'
  pmid:
  - '33576018'
file:
- access_level: open_access
  checksum: a812418fede076741c9c4dc07f317068
  content_type: application/pdf
  creator: amally
  date_created: 2023-11-02T17:02:11Z
  date_updated: 2023-11-02T17:02:11Z
  file_id: '14481'
  file_name: Zhao PlantCellEnv 2021_accepted.pdf
  file_size: 8437528
  relation: main_file
  success: 1
file_date_updated: 2023-11-02T17:02:11Z
has_accepted_license: '1'
intvolume: '        44'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 1846-1857
pmid: 1
publication: Plant, Cell & Environment
publication_identifier:
  eissn:
  - 1365-3040
  issn:
  - 0140-7791
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought
  avoidance
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 44
year: '2021'
...
---
_id: '9192'
abstract:
- lang: eng
  text: Here are the research data underlying the publication " Effects of fine-scale
    population structure on inbreeding in a long-term study of snapdragons (Antirrhinum
    majus)." Further information are summed up in the README document.
article_processing_charge: No
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Louise S
  full_name: Arathoon, Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
  orcid: 0000-0003-1771-714X
- first_name: Carina
  full_name: Baskett, Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects
    of fine-scale population structure on the distribution of heterozygosity in a
    long-term study of Antirrhinum majus. 2021. doi:<a href="https://doi.org/10.15479/AT:ISTA:9192">10.15479/AT:ISTA:9192</a>
  apa: Surendranadh, P., Arathoon, L. S., Baskett, C., Field, D., Pickup, M., &#38;
    Barton, N. H. (2021). Effects of fine-scale population structure on the distribution
    of heterozygosity in a long-term study of Antirrhinum majus. Institute of Science
    and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:9192">https://doi.org/10.15479/AT:ISTA:9192</a>
  chicago: Surendranadh, Parvathy, Louise S Arathoon, Carina Baskett, David Field,
    Melinda Pickup, and Nicholas H Barton. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    Institute of Science and Technology Austria, 2021. <a href="https://doi.org/10.15479/AT:ISTA:9192">https://doi.org/10.15479/AT:ISTA:9192</a>.
  ieee: P. Surendranadh, L. S. Arathoon, C. Baskett, D. Field, M. Pickup, and N. H.
    Barton, “Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus.” Institute of Science and Technology
    Austria, 2021.
  ista: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. 2021.
    Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus, Institute of Science and Technology
    Austria, <a href="https://doi.org/10.15479/AT:ISTA:9192">10.15479/AT:ISTA:9192</a>.
  mla: Surendranadh, Parvathy, et al. <i>Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus</i>.
    Institute of Science and Technology Austria, 2021, doi:<a href="https://doi.org/10.15479/AT:ISTA:9192">10.15479/AT:ISTA:9192</a>.
  short: P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton,
    (2021).
contributor:
- contributor_type: project_member
  first_name: Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
- contributor_type: project_member
  first_name: Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
- contributor_type: project_member
  first_name: Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
- contributor_type: project_member
  first_name: David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- contributor_type: project_member
  first_name: Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- contributor_type: project_leader
  first_name: Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
date_created: 2021-02-24T17:49:21Z
date_published: 2021-02-26T00:00:00Z
date_updated: 2025-04-15T08:20:40Z
day: '26'
ddc:
- '576'
department:
- _id: GradSch
- _id: NiBa
doi: 10.15479/AT:ISTA:9192
file:
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  checksum: f85537815809a8a4b7da9d01163f88c0
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  creator: larathoo
  date_created: 2021-02-24T17:45:13Z
  date_updated: 2021-02-24T17:45:13Z
  file_id: '9193'
  file_name: Data_Code.zip
  file_size: 5934452
  relation: main_file
  success: 1
file_date_updated: 2021-02-24T17:45:13Z
has_accepted_license: '1'
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '8254'
    relation: earlier_version
    status: public
  - id: '11321'
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    status: public
  - id: '11411'
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    status: public
status: public
title: Effects of fine-scale population structure on the distribution of heterozygosity
  in a long-term study of Antirrhinum majus
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9200'
abstract:
- lang: eng
  text: Formal design of embedded and cyber-physical systems relies on mathematical
    modeling. In this paper, we consider the model class of hybrid automata whose
    dynamics are defined by affine differential equations. Given a set of time-series
    data, we present an algorithmic approach to synthesize a hybrid automaton exhibiting
    behavior that is close to the data, up to a specified precision, and changes in
    synchrony with the data. A fundamental problem in our synthesis algorithm is to
    check membership of a time series in a hybrid automaton. Our solution integrates
    reachability and optimization techniques for affine dynamical systems to obtain
    both a sufficient and a necessary condition for membership, combined in a refinement
    framework. The algorithm processes one time series at a time and hence can be
    interrupted, provide an intermediate result, and be resumed. We report experimental
    results demonstrating the applicability of our synthesis approach.
acknowledgement: This research was supported in part by the Austrian Science Fund
  (FWF) under grant Z211-N23 (Wittgenstein Award) and the European Union’s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement
  No. 754411.
article_processing_charge: No
arxiv: 1
author:
- first_name: Miriam
  full_name: Garcia Soto, Miriam
  id: 4B3207F6-F248-11E8-B48F-1D18A9856A87
  last_name: Garcia Soto
  orcid: 0000-0003-2936-5719
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Christian
  full_name: Schilling, Christian
  id: 3A2F4DCE-F248-11E8-B48F-1D18A9856A87
  last_name: Schilling
  orcid: 0000-0003-3658-1065
citation:
  ama: 'Garcia Soto M, Henzinger TA, Schilling C. Synthesis of hybrid automata with
    affine dynamics from time-series data. In: <i>HSCC ’21: Proceedings of the 24th
    International Conference on Hybrid Systems: Computation and Control</i>. Association
    for Computing Machinery; 2021:2102.12734. doi:<a href="https://doi.org/10.1145/3447928.3456704">10.1145/3447928.3456704</a>'
  apa: 'Garcia Soto, M., Henzinger, T. A., &#38; Schilling, C. (2021). Synthesis of
    hybrid automata with affine dynamics from time-series data. In <i>HSCC ’21: Proceedings
    of the 24th International Conference on Hybrid Systems: Computation and Control</i>
    (p. 2102.12734). Nashville, TN, United States: Association for Computing Machinery.
    <a href="https://doi.org/10.1145/3447928.3456704">https://doi.org/10.1145/3447928.3456704</a>'
  chicago: 'Garcia Soto, Miriam, Thomas A Henzinger, and Christian Schilling. “Synthesis
    of Hybrid Automata with Affine Dynamics from Time-Series Data.” In <i>HSCC ’21:
    Proceedings of the 24th International Conference on Hybrid Systems: Computation
    and Control</i>, 2102.12734. Association for Computing Machinery, 2021. <a href="https://doi.org/10.1145/3447928.3456704">https://doi.org/10.1145/3447928.3456704</a>.'
  ieee: 'M. Garcia Soto, T. A. Henzinger, and C. Schilling, “Synthesis of hybrid automata
    with affine dynamics from time-series data,” in <i>HSCC ’21: Proceedings of the
    24th International Conference on Hybrid Systems: Computation and Control</i>,
    Nashville, TN, United States, 2021, p. 2102.12734.'
  ista: 'Garcia Soto M, Henzinger TA, Schilling C. 2021. Synthesis of hybrid automata
    with affine dynamics from time-series data. HSCC ’21: Proceedings of the 24th
    International Conference on Hybrid Systems: Computation and Control. HSCC: Hybrid
    Systems - Computation and Control, 2102.12734.'
  mla: 'Garcia Soto, Miriam, et al. “Synthesis of Hybrid Automata with Affine Dynamics
    from Time-Series Data.” <i>HSCC ’21: Proceedings of the 24th International Conference
    on Hybrid Systems: Computation and Control</i>, Association for Computing Machinery,
    2021, p. 2102.12734, doi:<a href="https://doi.org/10.1145/3447928.3456704">10.1145/3447928.3456704</a>.'
  short: 'M. Garcia Soto, T.A. Henzinger, C. Schilling, in:, HSCC ’21: Proceedings
    of the 24th International Conference on Hybrid Systems: Computation and Control,
    Association for Computing Machinery, 2021, p. 2102.12734.'
conference:
  end_date: 2021-05-21
  location: Nashville, TN, United States
  name: 'HSCC: Hybrid Systems - Computation and Control'
  start_date: 2021-05-19
corr_author: '1'
date_created: 2021-02-26T16:30:39Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2025-07-10T12:01:40Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1145/3447928.3456704
ec_funded: 1
external_id:
  arxiv:
  - '2102.12734'
  isi:
  - '000932821700028'
file:
- access_level: open_access
  checksum: 4c1202c1abf71384c3ee6fea88c2f80e
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-05-25T13:53:22Z
  date_updated: 2021-05-25T13:53:22Z
  file_id: '9424'
  file_name: 2021_HSCC_Soto.pdf
  file_size: 1474786
  relation: main_file
  success: 1
file_date_updated: 2021-05-25T13:53:22Z
has_accepted_license: '1'
isi: 1
keyword:
- hybrid automaton
- membership
- system identification
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '2102.12734'
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: 'HSCC ''21: Proceedings of the 24th International Conference on Hybrid
  Systems: Computation and Control'
publication_identifier:
  isbn:
  - '9781450383394'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synthesis of hybrid automata with affine dynamics from time-series data
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9206'
abstract:
- lang: eng
  text: 'The precise engineering of thermoelectric materials using nanocrystals as
    their building blocks has proven to be an excellent strategy to increase energy
    conversion efficiency. Here we present a synthetic route to produce Sb-doped PbS
    colloidal nanoparticles. These nanoparticles are then consolidated into nanocrystalline
    PbS:Sb using spark plasma sintering. We demonstrate that the introduction of Sb
    significantly influences the size, geometry, crystal lattice and especially the
    carrier concentration of PbS. The increase of charge carrier concentration achieved
    with the introduction of Sb translates into an increase of the electrical and
    thermal conductivities and a decrease of the Seebeck coefficient. Overall, PbS:Sb
    nanomaterial were characterized by two-fold higher thermoelectric figures of merit
    than undoped PbS. '
acknowledgement: "This work was supported by European Regional Development Funds and
  the Framework 7\r\nprogram under project UNION (FP7-NMP 310250). GSN acknowledges
  support from the US National Science Foundation under grant No. DMR-1748188. DC
  acknowledges support from COLCIENCIAS under project 120480863414. "
article_number: '853'
article_processing_charge: No
article_type: original
author:
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Kaya
  full_name: Wei, Kaya
  last_name: Wei
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Mengyao
  full_name: Li, Mengyao
  last_name: Li
- first_name: Aziz
  full_name: Genç, Aziz
  last_name: Genç
- first_name: Taisiia
  full_name: Berestok, Taisiia
  last_name: Berestok
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Alexey
  full_name: Shavel, Alexey
  last_name: Shavel
- first_name: George S.
  full_name: Nolas, George S.
  last_name: Nolas
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Cadavid D, Wei K, Liu Y, et al. Synthesis, bottom up assembly and thermoelectric
    properties of Sb-doped PbS nanocrystal building blocks. <i>Materials</i>. 2021;14(4).
    doi:<a href="https://doi.org/10.3390/ma14040853">10.3390/ma14040853</a>
  apa: Cadavid, D., Wei, K., Liu, Y., Zhang, Y., Li, M., Genç, A., … Cabot, A. (2021).
    Synthesis, bottom up assembly and thermoelectric properties of Sb-doped PbS nanocrystal
    building blocks. <i>Materials</i>. MDPI. <a href="https://doi.org/10.3390/ma14040853">https://doi.org/10.3390/ma14040853</a>
  chicago: Cadavid, Doris, Kaya Wei, Yu Liu, Yu Zhang, Mengyao Li, Aziz Genç, Taisiia
    Berestok, et al. “Synthesis, Bottom up Assembly and Thermoelectric Properties
    of Sb-Doped PbS Nanocrystal Building Blocks.” <i>Materials</i>. MDPI, 2021. <a
    href="https://doi.org/10.3390/ma14040853">https://doi.org/10.3390/ma14040853</a>.
  ieee: D. Cadavid <i>et al.</i>, “Synthesis, bottom up assembly and thermoelectric
    properties of Sb-doped PbS nanocrystal building blocks,” <i>Materials</i>, vol.
    14, no. 4. MDPI, 2021.
  ista: Cadavid D, Wei K, Liu Y, Zhang Y, Li M, Genç A, Berestok T, Ibáñez M, Shavel
    A, Nolas GS, Cabot A. 2021. Synthesis, bottom up assembly and thermoelectric properties
    of Sb-doped PbS nanocrystal building blocks. Materials. 14(4), 853.
  mla: Cadavid, Doris, et al. “Synthesis, Bottom up Assembly and Thermoelectric Properties
    of Sb-Doped PbS Nanocrystal Building Blocks.” <i>Materials</i>, vol. 14, no. 4,
    853, MDPI, 2021, doi:<a href="https://doi.org/10.3390/ma14040853">10.3390/ma14040853</a>.
  short: D. Cadavid, K. Wei, Y. Liu, Y. Zhang, M. Li, A. Genç, T. Berestok, M. Ibáñez,
    A. Shavel, G.S. Nolas, A. Cabot, Materials 14 (2021).
date_created: 2021-02-28T23:01:24Z
date_published: 2021-02-10T00:00:00Z
date_updated: 2025-06-12T06:35:03Z
day: '10'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.3390/ma14040853
external_id:
  isi:
  - '000624094100001'
  pmid:
  - '33578981'
file:
- access_level: open_access
  checksum: 76d6c7f97b810ce504ab151c9bf3524e
  content_type: application/pdf
  creator: dernst
  date_created: 2021-03-03T07:32:01Z
  date_updated: 2021-03-03T07:32:01Z
  file_id: '9218'
  file_name: 2021_Materials_Cadavid.pdf
  file_size: 2722517
  relation: main_file
  success: 1
file_date_updated: 2021-03-03T07:32:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '4'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Materials
publication_identifier:
  eissn:
  - 1996-1944
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synthesis, bottom up assembly and thermoelectric properties of Sb-doped PbS
  nanocrystal building blocks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2021'
...
---
_id: '9207'
abstract:
- lang: eng
  text: "In this paper we experimentally study the transitional range of Reynolds
    numbers in\r\nplane Couette–Poiseuille flow, focusing our attention on the localized
    turbulent structures\r\ntriggered by a strong impulsive jet and the large-scale
    flow generated around these\r\nstructures. We present a detailed investigation
    of the large-scale flow and show how\r\nits amplitude depends on Reynolds number
    and amplitude perturbation. In addition,\r\nwe characterize the initial dynamics
    of the localized turbulent spot, which includes the\r\ncoupling between the small
    and large scales, as well as the dependence of the advection\r\nspeed on the large-scale
    flow generated around the spot. Finally, we provide the first\r\nexperimental
    measurements of the large-scale flow around an oblique turbulent band."
acknowledgement: "We thank Y. Duguet, S. Gomé, G. Lemoult, T. Liu, B. Semin and L.S.
  Tuckerman for\r\nfruitful discussions. \r\nThis work was supported by a grant, TRANSFLOW,
  provided by the Agence Nationale de\r\nla Recherche (ANR). A.M.P. was partially
  supported by the French Embassy in Russia (I.I. Mechnikov scholarship) and by the
  Russian Science Foundation (project no. 18-79-00189). L.K. was partially supported
  by the European Union’s Horizon 2020 research and innovation programme under the
  Marie Skłodowska-Curie grant agreement no. 754411."
article_number: A24
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Lukasz
  full_name: Klotz, Lukasz
  id: 2C9AF1C2-F248-11E8-B48F-1D18A9856A87
  last_name: Klotz
  orcid: 0000-0003-1740-7635
- first_name: A. M.
  full_name: Pavlenko, A. M.
  last_name: Pavlenko
- first_name: J. E.
  full_name: Wesfreid, J. E.
  last_name: Wesfreid
citation:
  ama: 'Klotz L, Pavlenko AM, Wesfreid JE. Experimental measurements in plane Couette-Poiseuille
    flow: Dynamics of the large- and small-scale flow. <i>Journal of Fluid Mechanics</i>.
    2021;912. doi:<a href="https://doi.org/10.1017/jfm.2020.1089">10.1017/jfm.2020.1089</a>'
  apa: 'Klotz, L., Pavlenko, A. M., &#38; Wesfreid, J. E. (2021). Experimental measurements
    in plane Couette-Poiseuille flow: Dynamics of the large- and small-scale flow.
    <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2020.1089">https://doi.org/10.1017/jfm.2020.1089</a>'
  chicago: 'Klotz, Lukasz, A. M. Pavlenko, and J. E. Wesfreid. “Experimental Measurements
    in Plane Couette-Poiseuille Flow: Dynamics of the Large- and Small-Scale Flow.”
    <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2021. <a href="https://doi.org/10.1017/jfm.2020.1089">https://doi.org/10.1017/jfm.2020.1089</a>.'
  ieee: 'L. Klotz, A. M. Pavlenko, and J. E. Wesfreid, “Experimental measurements
    in plane Couette-Poiseuille flow: Dynamics of the large- and small-scale flow,”
    <i>Journal of Fluid Mechanics</i>, vol. 912. Cambridge University Press, 2021.'
  ista: 'Klotz L, Pavlenko AM, Wesfreid JE. 2021. Experimental measurements in plane
    Couette-Poiseuille flow: Dynamics of the large- and small-scale flow. Journal
    of Fluid Mechanics. 912, A24.'
  mla: 'Klotz, Lukasz, et al. “Experimental Measurements in Plane Couette-Poiseuille
    Flow: Dynamics of the Large- and Small-Scale Flow.” <i>Journal of Fluid Mechanics</i>,
    vol. 912, A24, Cambridge University Press, 2021, doi:<a href="https://doi.org/10.1017/jfm.2020.1089">10.1017/jfm.2020.1089</a>.'
  short: L. Klotz, A.M. Pavlenko, J.E. Wesfreid, Journal of Fluid Mechanics 912 (2021).
date_created: 2021-02-28T23:01:25Z
date_published: 2021-02-15T00:00:00Z
date_updated: 2025-04-14T07:43:51Z
day: '15'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1017/jfm.2020.1089
ec_funded: 1
external_id:
  isi:
  - '000618034400001'
file:
- access_level: open_access
  checksum: b8020d6338667673e34fde0608913dd2
  content_type: application/pdf
  creator: dernst
  date_created: 2021-03-03T09:49:34Z
  date_updated: 2021-03-03T09:49:34Z
  file_id: '9220'
  file_name: 2021_JourFluidMechanics_Klotz.pdf
  file_size: 4124471
  relation: main_file
  success: 1
file_date_updated: 2021-03-03T09:49:34Z
has_accepted_license: '1'
intvolume: '       912'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Journal of Fluid Mechanics
publication_identifier:
  eissn:
  - 1469-7645
  issn:
  - 0022-1120
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Experimental measurements in plane Couette-Poiseuille flow: Dynamics of the
  large- and small-scale flow'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 912
year: '2021'
...
---
_id: '9210'
abstract:
- lang: eng
  text: "Modern neural networks can easily fit their training set perfectly. Surprisingly,
    despite being “overfit” in this way, they tend to generalize well to future data,
    thereby defying the classic bias–variance trade-off of machine learning theory.
    Of the many possible explanations, a prevalent one is that training by stochastic
    gradient descent (SGD) imposes an implicit bias that leads it to learn simple
    functions, and these simple functions generalize well. However, the specifics
    of this implicit bias are not well understood.\r\nIn this work, we explore the
    smoothness conjecture which states that SGD is implicitly biased towards learning
    functions that are smooth. We propose several measures to formalize the intuitive
    notion of smoothness, and we conduct experiments to determine whether SGD indeed
    implicitly optimizes for these measures. Our findings rule out the possibility
    that smoothness measures based on first-order derivatives are being implicitly
    enforced. They are supportive, though, of the smoothness conjecture for measures
    based on second-order derivatives."
article_processing_charge: No
author:
- first_name: Vaclav
  full_name: Volhejn, Vaclav
  id: d5235fb4-7a6d-11eb-b254-f25d12d631a8
  last_name: Volhejn
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Volhejn V, Lampert C. Does SGD implicitly optimize for smoothness? In: <i>42nd
    German Conference on Pattern Recognition</i>. Vol 12544. LNCS. Springer; 2021:246-259.
    doi:<a href="https://doi.org/10.1007/978-3-030-71278-5_18">10.1007/978-3-030-71278-5_18</a>'
  apa: 'Volhejn, V., &#38; Lampert, C. (2021). Does SGD implicitly optimize for smoothness?
    In <i>42nd German Conference on Pattern Recognition</i> (Vol. 12544, pp. 246–259).
    Tübingen, Germany: Springer. <a href="https://doi.org/10.1007/978-3-030-71278-5_18">https://doi.org/10.1007/978-3-030-71278-5_18</a>'
  chicago: Volhejn, Vaclav, and Christoph Lampert. “Does SGD Implicitly Optimize for
    Smoothness?” In <i>42nd German Conference on Pattern Recognition</i>, 12544:246–59.
    LNCS. Springer, 2021. <a href="https://doi.org/10.1007/978-3-030-71278-5_18">https://doi.org/10.1007/978-3-030-71278-5_18</a>.
  ieee: V. Volhejn and C. Lampert, “Does SGD implicitly optimize for smoothness?,”
    in <i>42nd German Conference on Pattern Recognition</i>, Tübingen, Germany, 2021,
    vol. 12544, pp. 246–259.
  ista: 'Volhejn V, Lampert C. 2021. Does SGD implicitly optimize for smoothness?
    42nd German Conference on Pattern Recognition. DAGM GCPR: German Conference on
    Pattern Recognition LNCS vol. 12544, 246–259.'
  mla: Volhejn, Vaclav, and Christoph Lampert. “Does SGD Implicitly Optimize for Smoothness?”
    <i>42nd German Conference on Pattern Recognition</i>, vol. 12544, Springer, 2021,
    pp. 246–59, doi:<a href="https://doi.org/10.1007/978-3-030-71278-5_18">10.1007/978-3-030-71278-5_18</a>.
  short: V. Volhejn, C. Lampert, in:, 42nd German Conference on Pattern Recognition,
    Springer, 2021, pp. 246–259.
conference:
  end_date: 2020-10-01
  location: Tübingen, Germany
  name: 'DAGM GCPR: German Conference on Pattern Recognition '
  start_date: 2020-09-28
date_created: 2021-03-01T09:01:16Z
date_published: 2021-03-17T00:00:00Z
date_updated: 2025-09-10T10:00:33Z
day: '17'
ddc:
- '510'
department:
- _id: ChLa
doi: 10.1007/978-3-030-71278-5_18
external_id:
  isi:
  - '001500603200018'
file:
- access_level: open_access
  checksum: 3e3628ab1cf658d82524963f808004ea
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-12T07:27:58Z
  date_updated: 2022-08-12T07:27:58Z
  file_id: '11820'
  file_name: 2020_GCPR_submitted_Volhejn.pdf
  file_size: 420234
  relation: main_file
  success: 1
file_date_updated: 2022-08-12T07:27:58Z
has_accepted_license: '1'
intvolume: '     12544'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 246-259
publication: 42nd German Conference on Pattern Recognition
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783030712778'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: Does SGD implicitly optimize for smoothness?
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 12544
year: '2021'
...
---
_id: '9224'
abstract:
- lang: eng
  text: We re-examine attempts to study the many-body localization transition using
    measures that are physically natural on the ergodic/quantum chaotic regime of
    the phase diagram. Using simple scaling arguments and an analysis of various models
    for which rigorous results are available, we find that these measures can be particularly
    adversely affected by the strong finite-size effects observed in nearly all numerical
    studies of many-body localization. This severely impacts their utility in probing
    the transition and the localized phase. In light of this analysis, we discuss
    a recent study (Šuntajs et al., 2020) of the behaviour of the Thouless energy
    and level repulsion in disordered spin chains, and its implications for the question
    of whether MBL is a true phase of matter.
article_number: '168415'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: D. A.
  full_name: Abanin, D. A.
  last_name: Abanin
- first_name: J. H.
  full_name: Bardarson, J. H.
  last_name: Bardarson
- first_name: G.
  full_name: De Tomasi, G.
  last_name: De Tomasi
- first_name: S.
  full_name: Gopalakrishnan, S.
  last_name: Gopalakrishnan
- first_name: V.
  full_name: Khemani, V.
  last_name: Khemani
- first_name: S. A.
  full_name: Parameswaran, S. A.
  last_name: Parameswaran
- first_name: F.
  full_name: Pollmann, F.
  last_name: Pollmann
- first_name: A. C.
  full_name: Potter, A. C.
  last_name: Potter
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: R.
  full_name: Vasseur, R.
  last_name: Vasseur
citation:
  ama: 'Abanin DA, Bardarson JH, De Tomasi G, et al. Distinguishing localization from
    chaos: Challenges in finite-size systems. <i>Annals of Physics</i>. 2021;427(4).
    doi:<a href="https://doi.org/10.1016/j.aop.2021.168415">10.1016/j.aop.2021.168415</a>'
  apa: 'Abanin, D. A., Bardarson, J. H., De Tomasi, G., Gopalakrishnan, S., Khemani,
    V., Parameswaran, S. A., … Vasseur, R. (2021). Distinguishing localization from
    chaos: Challenges in finite-size systems. <i>Annals of Physics</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.aop.2021.168415">https://doi.org/10.1016/j.aop.2021.168415</a>'
  chicago: 'Abanin, D. A., J. H. Bardarson, G. De Tomasi, S. Gopalakrishnan, V. Khemani,
    S. A. Parameswaran, F. Pollmann, A. C. Potter, Maksym Serbyn, and R. Vasseur.
    “Distinguishing Localization from Chaos: Challenges in Finite-Size Systems.” <i>Annals
    of Physics</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.aop.2021.168415">https://doi.org/10.1016/j.aop.2021.168415</a>.'
  ieee: 'D. A. Abanin <i>et al.</i>, “Distinguishing localization from chaos: Challenges
    in finite-size systems,” <i>Annals of Physics</i>, vol. 427, no. 4. Elsevier,
    2021.'
  ista: 'Abanin DA, Bardarson JH, De Tomasi G, Gopalakrishnan S, Khemani V, Parameswaran
    SA, Pollmann F, Potter AC, Serbyn M, Vasseur R. 2021. Distinguishing localization
    from chaos: Challenges in finite-size systems. Annals of Physics. 427(4), 168415.'
  mla: 'Abanin, D. A., et al. “Distinguishing Localization from Chaos: Challenges
    in Finite-Size Systems.” <i>Annals of Physics</i>, vol. 427, no. 4, 168415, Elsevier,
    2021, doi:<a href="https://doi.org/10.1016/j.aop.2021.168415">10.1016/j.aop.2021.168415</a>.'
  short: D.A. Abanin, J.H. Bardarson, G. De Tomasi, S. Gopalakrishnan, V. Khemani,
    S.A. Parameswaran, F. Pollmann, A.C. Potter, M. Serbyn, R. Vasseur, Annals of
    Physics 427 (2021).
date_created: 2021-03-07T23:01:25Z
date_published: 2021-04-01T00:00:00Z
date_updated: 2025-07-10T12:01:41Z
day: '01'
department:
- _id: MaSe
doi: 10.1016/j.aop.2021.168415
external_id:
  arxiv:
  - '1911.04501'
  isi:
  - '000634879800007'
intvolume: '       427'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1911.04501
month: '04'
oa: 1
oa_version: Preprint
publication: Annals of Physics
publication_identifier:
  eissn:
  - 1096-035X
  issn:
  - 0003-4916
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Distinguishing localization from chaos: Challenges in finite-size systems'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 427
year: '2021'
...
---
_id: '9227'
abstract:
- lang: eng
  text: In the multiway cut problem we are given a weighted undirected graph   G=(V,E)  and
    a set   T⊆V  of k terminals. The goal is to find a minimum weight set of edges   E′⊆E  with
    the property that by removing   E′  from G all the terminals become disconnected.
    In this paper we present a simple local search approximation algorithm for the
    multiway cut problem with approximation ratio   2−2k . We present an experimental
    evaluation of the performance of our local search algorithm and show that it greatly
    outperforms the isolation heuristic of Dalhaus et al. and it has similar performance
    as the much more complex algorithms of Calinescu et al., Sharma and Vondrak, and
    Buchbinder et al. which have the currently best known approximation ratios for
    this problem.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Andrew
  full_name: Bloch-Hansen, Andrew
  last_name: Bloch-Hansen
- first_name: Nasim
  full_name: Samei, Nasim
  id: C1531CAE-36E9-11EA-845F-33AA3DDC885E
  last_name: Samei
- first_name: Roberto
  full_name: Solis-Oba, Roberto
  last_name: Solis-Oba
citation:
  ama: 'Bloch-Hansen A, Samei N, Solis-Oba R. Experimental evaluation of a local search
    approximation algorithm for the multiway cut problem. In: <i>Conference on Algorithms
    and Discrete Applied Mathematics</i>. Vol 12601. Springer Nature; 2021:346-358.
    doi:<a href="https://doi.org/10.1007/978-3-030-67899-9_28">10.1007/978-3-030-67899-9_28</a>'
  apa: 'Bloch-Hansen, A., Samei, N., &#38; Solis-Oba, R. (2021). Experimental evaluation
    of a local search approximation algorithm for the multiway cut problem. In <i>Conference
    on Algorithms and Discrete Applied Mathematics</i> (Vol. 12601, pp. 346–358).
    Rupnagar, India: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-67899-9_28">https://doi.org/10.1007/978-3-030-67899-9_28</a>'
  chicago: Bloch-Hansen, Andrew, Nasim Samei, and Roberto Solis-Oba. “Experimental
    Evaluation of a Local Search Approximation Algorithm for the Multiway Cut Problem.”
    In <i>Conference on Algorithms and Discrete Applied Mathematics</i>, 12601:346–58.
    Springer Nature, 2021. <a href="https://doi.org/10.1007/978-3-030-67899-9_28">https://doi.org/10.1007/978-3-030-67899-9_28</a>.
  ieee: A. Bloch-Hansen, N. Samei, and R. Solis-Oba, “Experimental evaluation of a
    local search approximation algorithm for the multiway cut problem,” in <i>Conference
    on Algorithms and Discrete Applied Mathematics</i>, Rupnagar, India, 2021, vol.
    12601, pp. 346–358.
  ista: 'Bloch-Hansen A, Samei N, Solis-Oba R. 2021. Experimental evaluation of a
    local search approximation algorithm for the multiway cut problem. Conference
    on Algorithms and Discrete Applied Mathematics. CALDAM: Conference on Algorithms
    and Discrete Applied Mathematics, LNCS, vol. 12601, 346–358.'
  mla: Bloch-Hansen, Andrew, et al. “Experimental Evaluation of a Local Search Approximation
    Algorithm for the Multiway Cut Problem.” <i>Conference on Algorithms and Discrete
    Applied Mathematics</i>, vol. 12601, Springer Nature, 2021, pp. 346–58, doi:<a
    href="https://doi.org/10.1007/978-3-030-67899-9_28">10.1007/978-3-030-67899-9_28</a>.
  short: A. Bloch-Hansen, N. Samei, R. Solis-Oba, in:, Conference on Algorithms and
    Discrete Applied Mathematics, Springer Nature, 2021, pp. 346–358.
conference:
  end_date: 2021-02-13
  location: Rupnagar, India
  name: 'CALDAM: Conference on Algorithms and Discrete Applied Mathematics'
  start_date: 2021-02-11
date_created: 2021-03-07T23:01:25Z
date_published: 2021-01-28T00:00:00Z
date_updated: 2025-09-10T10:01:54Z
day: '28'
department:
- _id: VlKo
doi: 10.1007/978-3-030-67899-9_28
external_id:
  isi:
  - '001433483100028'
intvolume: '     12601'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
page: 346-358
publication: Conference on Algorithms and Discrete Applied Mathematics
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783030678982'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Experimental evaluation of a local search approximation algorithm for the multiway
  cut problem
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 12601
year: '2021'
...
---
_id: '9228'
abstract:
- lang: eng
  text: Legacy conferences are costly and time consuming, and exclude scientists lacking
    various resources or abilities. During the 2020 pandemic, we created an online
    conference platform, Neuromatch Conferences (NMC), aimed at developing technological
    and cultural changes to make conferences more democratic, scalable, and accessible.
    We discuss the lessons we learned.
acknowledgement: We thank all of our volunteers from the NMC conferences (list of
  names in the appendix). We also thank the NSF for support from 1734220 to B.W.,
  and DARPA for support to T.A.
article_processing_charge: No
article_type: original
author:
- first_name: Titipat
  full_name: Achakulvisut, Titipat
  last_name: Achakulvisut
- first_name: Tulakan
  full_name: Ruangrong, Tulakan
  last_name: Ruangrong
- first_name: Patrick
  full_name: Mineault, Patrick
  last_name: Mineault
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: Megan A.K.
  full_name: Peters, Megan A.K.
  last_name: Peters
- first_name: Panayiota
  full_name: Poirazi, Panayiota
  last_name: Poirazi
- first_name: Christopher
  full_name: Rozell, Christopher
  last_name: Rozell
- first_name: Brad
  full_name: Wyble, Brad
  last_name: Wyble
- first_name: Dan F.M.
  full_name: Goodman, Dan F.M.
  last_name: Goodman
- first_name: Konrad Paul
  full_name: Kording, Konrad Paul
  last_name: Kording
citation:
  ama: 'Achakulvisut T, Ruangrong T, Mineault P, et al. Towards democratizing and
    automating online conferences: Lessons from the Neuromatch Conferences. <i>Trends
    in Cognitive Sciences</i>. 2021;25(4):265-268. doi:<a href="https://doi.org/10.1016/j.tics.2021.01.007">10.1016/j.tics.2021.01.007</a>'
  apa: 'Achakulvisut, T., Ruangrong, T., Mineault, P., Vogels, T. P., Peters, M. A.
    K., Poirazi, P., … Kording, K. P. (2021). Towards democratizing and automating
    online conferences: Lessons from the Neuromatch Conferences. <i>Trends in Cognitive
    Sciences</i>. Elsevier. <a href="https://doi.org/10.1016/j.tics.2021.01.007">https://doi.org/10.1016/j.tics.2021.01.007</a>'
  chicago: 'Achakulvisut, Titipat, Tulakan Ruangrong, Patrick Mineault, Tim P Vogels,
    Megan A.K. Peters, Panayiota Poirazi, Christopher Rozell, Brad Wyble, Dan F.M.
    Goodman, and Konrad Paul Kording. “Towards Democratizing and Automating Online
    Conferences: Lessons from the Neuromatch Conferences.” <i>Trends in Cognitive
    Sciences</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.tics.2021.01.007">https://doi.org/10.1016/j.tics.2021.01.007</a>.'
  ieee: 'T. Achakulvisut <i>et al.</i>, “Towards democratizing and automating online
    conferences: Lessons from the Neuromatch Conferences,” <i>Trends in Cognitive
    Sciences</i>, vol. 25, no. 4. Elsevier, pp. 265–268, 2021.'
  ista: 'Achakulvisut T, Ruangrong T, Mineault P, Vogels TP, Peters MAK, Poirazi P,
    Rozell C, Wyble B, Goodman DFM, Kording KP. 2021. Towards democratizing and automating
    online conferences: Lessons from the Neuromatch Conferences. Trends in Cognitive
    Sciences. 25(4), 265–268.'
  mla: 'Achakulvisut, Titipat, et al. “Towards Democratizing and Automating Online
    Conferences: Lessons from the Neuromatch Conferences.” <i>Trends in Cognitive
    Sciences</i>, vol. 25, no. 4, Elsevier, 2021, pp. 265–68, doi:<a href="https://doi.org/10.1016/j.tics.2021.01.007">10.1016/j.tics.2021.01.007</a>.'
  short: T. Achakulvisut, T. Ruangrong, P. Mineault, T.P. Vogels, M.A.K. Peters, P.
    Poirazi, C. Rozell, B. Wyble, D.F.M. Goodman, K.P. Kording, Trends in Cognitive
    Sciences 25 (2021) 265–268.
date_created: 2021-03-07T23:01:25Z
date_published: 2021-04-01T00:00:00Z
date_updated: 2023-08-07T13:59:07Z
day: '01'
ddc:
- '570'
department:
- _id: TiVo
doi: 10.1016/j.tics.2021.01.007
external_id:
  isi:
  - '000627418000001'
  pmid:
  - '33608214'
file:
- access_level: open_access
  checksum: 87e39ea7bd266b976e8631b66979214d
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-27T07:31:24Z
  date_updated: 2022-05-27T07:31:24Z
  file_id: '11415'
  file_name: 2021_TrendsCognitiveSciences_Achakulvisut.pdf
  file_size: 380720
  relation: main_file
  success: 1
file_date_updated: 2022-05-27T07:31:24Z
has_accepted_license: '1'
intvolume: '        25'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 265-268
pmid: 1
publication: Trends in Cognitive Sciences
publication_identifier:
  eissn:
  - 1879-307X
  issn:
  - 1364-6613
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Towards democratizing and automating online conferences: Lessons from the
  Neuromatch Conferences'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 25
year: '2021'
...
---
_id: '9230'
abstract:
- lang: eng
  text: "We consider a model of the Riemann zeta function on the critical axis and
    study its maximum over intervals of length (log T)θ, where θ is either fixed or
    tends to zero at a suitable rate.\r\nIt is shown that the deterministic level
    of the maximum interpolates smoothly between the ones\r\nof log-correlated variables
    and of i.i.d. random variables, exhibiting a smooth transition ‘from\r\n3/4 to
    1/4’ in the second order. This provides a natural context where extreme value
    statistics of\r\nlog-correlated variables with time-dependent variance and rate
    occur. A key ingredient of the\r\nproof is a precise upper tail tightness estimate
    for the maximum of the model on intervals of\r\nsize one, that includes a Gaussian
    correction. This correction is expected to be present for the\r\nRiemann zeta
    function and pertains to the question of the correct order of the maximum of\r\nthe
    zeta function in large intervals."
acknowledgement: The research of L.-P. A. is supported in part by the grant NSF CAREER
  DMS-1653602. G. D. gratefully acknowledges support from the European Union’s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement
  No. 754411. The research of L. H. is supported in part by the Deutsche Forschungsgemeinschaft
  (DFG, German Research Foundation) through Project-ID 233630050 -TRR 146, Project-ID
  443891315 within SPP 2265 and Project-ID 446173099.
article_number: '2103.04817'
article_processing_charge: No
arxiv: 1
author:
- first_name: Louis-Pierre
  full_name: Arguin, Louis-Pierre
  last_name: Arguin
- first_name: Guillaume
  full_name: Dubach, Guillaume
  id: D5C6A458-10C4-11EA-ABF4-A4B43DDC885E
  last_name: Dubach
  orcid: 0000-0001-6892-8137
- first_name: Lisa
  full_name: Hartung, Lisa
  last_name: Hartung
citation:
  ama: Arguin L-P, Dubach G, Hartung L. Maxima of a random model of the Riemann zeta
    function over intervals of varying length. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2103.04817">10.48550/arXiv.2103.04817</a>
  apa: Arguin, L.-P., Dubach, G., &#38; Hartung, L. (n.d.). Maxima of a random model
    of the Riemann zeta function over intervals of varying length. <i>arXiv</i>. <a
    href="https://doi.org/10.48550/arXiv.2103.04817">https://doi.org/10.48550/arXiv.2103.04817</a>
  chicago: Arguin, Louis-Pierre, Guillaume Dubach, and Lisa Hartung. “Maxima of a
    Random Model of the Riemann Zeta Function over Intervals of Varying Length.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/arXiv.2103.04817">https://doi.org/10.48550/arXiv.2103.04817</a>.
  ieee: L.-P. Arguin, G. Dubach, and L. Hartung, “Maxima of a random model of the
    Riemann zeta function over intervals of varying length,” <i>arXiv</i>. .
  ista: Arguin L-P, Dubach G, Hartung L. Maxima of a random model of the Riemann zeta
    function over intervals of varying length. arXiv, 2103.04817.
  mla: Arguin, Louis-Pierre, et al. “Maxima of a Random Model of the Riemann Zeta
    Function over Intervals of Varying Length.” <i>ArXiv</i>, 2103.04817, doi:<a href="https://doi.org/10.48550/arXiv.2103.04817">10.48550/arXiv.2103.04817</a>.
  short: L.-P. Arguin, G. Dubach, L. Hartung, ArXiv (n.d.).
date_created: 2021-03-09T11:08:15Z
date_published: 2021-03-08T00:00:00Z
date_updated: 2025-04-14T07:43:51Z
day: '08'
department:
- _id: LaEr
doi: 10.48550/arXiv.2103.04817
ec_funded: 1
external_id:
  arxiv:
  - '2103.04817'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2103.04817
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: arXiv
publication_status: submitted
status: public
title: Maxima of a random model of the Riemann zeta function over intervals of varying
  length
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9234'
abstract:
- lang: eng
  text: In this paper, we present two new inertial projection-type methods for solving
    multivalued variational inequality problems in finite-dimensional spaces. We establish
    the convergence of the sequence generated by these methods when the multivalued
    mapping associated with the problem is only required to be locally bounded without
    any monotonicity assumption. Furthermore, the inertial techniques that we employ
    in this paper are quite different from the ones used in most papers. Moreover,
    based on the weaker assumptions on the inertial factor in our methods, we derive
    several special cases of our methods. Finally, we present some experimental results
    to illustrate the profits that we gain by introducing the inertial extrapolation
    steps.
acknowledgement: 'The authors sincerely thank the Editor-in-Chief and anonymous referees
  for their careful reading, constructive comments and fruitful suggestions that help
  improve the manuscript. The research of the first author is supported by the National
  Research Foundation (NRF) South Africa (S& F-DSI/NRF Free Standing Postdoctoral
  Fellowship; Grant Number: 120784). The first author also acknowledges the financial
  support from DSI/NRF, South Africa Center of Excellence in Mathematical and Statistical
  Sciences (CoE-MaSS) Postdoctoral Fellowship. The second author has received funding
  from the European Research Council (ERC) under the European Union’s Seventh Framework
  Program (FP7 - 2007-2013) (Grant agreement No. 616160). Open Access funding provided
  by Institute of Science and Technology (IST Austria).'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Chinedu
  full_name: Izuchukwu, Chinedu
  last_name: Izuchukwu
- first_name: Yekini
  full_name: Shehu, Yekini
  id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87
  last_name: Shehu
  orcid: 0000-0001-9224-7139
citation:
  ama: Izuchukwu C, Shehu Y. New inertial projection methods for solving multivalued
    variational inequality problems beyond monotonicity. <i>Networks and Spatial Economics</i>.
    2021;21(2):291-323. doi:<a href="https://doi.org/10.1007/s11067-021-09517-w">10.1007/s11067-021-09517-w</a>
  apa: Izuchukwu, C., &#38; Shehu, Y. (2021). New inertial projection methods for
    solving multivalued variational inequality problems beyond monotonicity. <i>Networks
    and Spatial Economics</i>. Springer Nature. <a href="https://doi.org/10.1007/s11067-021-09517-w">https://doi.org/10.1007/s11067-021-09517-w</a>
  chicago: Izuchukwu, Chinedu, and Yekini Shehu. “New Inertial Projection Methods
    for Solving Multivalued Variational Inequality Problems beyond Monotonicity.”
    <i>Networks and Spatial Economics</i>. Springer Nature, 2021. <a href="https://doi.org/10.1007/s11067-021-09517-w">https://doi.org/10.1007/s11067-021-09517-w</a>.
  ieee: C. Izuchukwu and Y. Shehu, “New inertial projection methods for solving multivalued
    variational inequality problems beyond monotonicity,” <i>Networks and Spatial
    Economics</i>, vol. 21, no. 2. Springer Nature, pp. 291–323, 2021.
  ista: Izuchukwu C, Shehu Y. 2021. New inertial projection methods for solving multivalued
    variational inequality problems beyond monotonicity. Networks and Spatial Economics.
    21(2), 291–323.
  mla: Izuchukwu, Chinedu, and Yekini Shehu. “New Inertial Projection Methods for
    Solving Multivalued Variational Inequality Problems beyond Monotonicity.” <i>Networks
    and Spatial Economics</i>, vol. 21, no. 2, Springer Nature, 2021, pp. 291–323,
    doi:<a href="https://doi.org/10.1007/s11067-021-09517-w">10.1007/s11067-021-09517-w</a>.
  short: C. Izuchukwu, Y. Shehu, Networks and Spatial Economics 21 (2021) 291–323.
date_created: 2021-03-10T12:18:47Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2024-11-04T13:52:33Z
day: '01'
ddc:
- '510'
department:
- _id: VlKo
doi: 10.1007/s11067-021-09517-w
ec_funded: 1
external_id:
  isi:
  - '000625002100001'
file:
- access_level: open_access
  checksum: 22b4253a2e5da843622a2df713784b4c
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-08-11T12:44:16Z
  date_updated: 2021-08-11T12:44:16Z
  file_id: '9884'
  file_name: 2021_NetworksSpatialEconomics_Shehu.pdf
  file_size: 834964
  relation: main_file
  success: 1
file_date_updated: 2021-08-11T12:44:16Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '2'
keyword:
- Computer Networks and Communications
- Software
- Artificial Intelligence
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 291-323
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '616160'
  name: 'Discrete Optimization in Computer Vision: Theory and Practice'
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Networks and Spatial Economics
publication_identifier:
  eissn:
  - 1572-9427
  issn:
  - 1566-113X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: New inertial projection methods for solving multivalued variational inequality
  problems beyond monotonicity
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 21
year: '2021'
...
---
_id: '9235'
abstract:
- lang: eng
  text: Cu2–xS has become one of the most promising thermoelectric materials for application
    in the middle-high temperature range. Its advantages include the abundance, low
    cost, and safety of its elements and a high performance at relatively elevated
    temperatures. However, stability issues limit its operation current and temperature,
    thus calling for the optimization of the material performance in the middle temperature
    range. Here, we present a synthetic protocol for large scale production of covellite
    CuS nanoparticles at ambient temperature and atmosphere, and using water as a
    solvent. The crystal phase and stoichiometry of the particles are afterward tuned
    through an annealing process at a moderate temperature under inert or reducing
    atmosphere. While annealing under argon results in Cu1.8S nanopowder with a rhombohedral
    crystal phase, annealing in an atmosphere containing hydrogen leads to tetragonal
    Cu1.96S. High temperature X-ray diffraction analysis shows the material annealed
    in argon to transform to the cubic phase at ca. 400 K, while the material annealed
    in the presence of hydrogen undergoes two phase transitions, first to hexagonal
    and then to the cubic structure. The annealing atmosphere, temperature, and time
    allow adjustment of the density of copper vacancies and thus tuning of the charge
    carrier concentration and material transport properties. In this direction, the
    material annealed under Ar is characterized by higher electrical conductivities
    but lower Seebeck coefficients than the material annealed in the presence of hydrogen.
    By optimizing the charge carrier concentration through the annealing time, Cu2–xS
    with record figures of merit in the middle temperature range, up to 1.41 at 710
    K, is obtained. We finally demonstrate that this strategy, based on a low-cost
    and scalable solution synthesis process, is also suitable for the production of
    high performance Cu2–xS layers using high throughput and cost-effective printing
    technologies.
acknowledgement: This work was supported by the European Regional Development Funds.
  M.Y.L., X.H., T.Z., and K.X. thank the China Scholarship Council for scholarship
  support. M.I. acknowledges financial support from IST Austria. J.L. acknowledges
  support from the National Natural Science Foundation of China (No. 22008091), the
  funding for scientific research startup of Jiangsu University (No. 19JDG044), and
  Jiangsu Provincial Program for High-Level Innovative and Entrepreneurial Talents
  Introduction. J.L. is a Serra Húnter fellow and is grateful to the ICREA Academia
  program and projects MICINN/FEDER RTI2018-093996-B-C31 and GC 2017 SGR 128. ICN2
  acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish
  MINECO ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from Spanish
  MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme/Generalitat
  de Catalunya. Part of the present work has been performed in the framework of Universitat
  Autònoma de Barcelona Materials Science PhD program. T.Z. has received funding from
  the CSC-UAB PhD scholarship program.
article_processing_charge: No
article_type: original
author:
- first_name: Mengyao
  full_name: Li, Mengyao
  last_name: Li
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Xu
  full_name: Han, Xu
  last_name: Han
- first_name: Ting
  full_name: Zhang, Ting
  last_name: Zhang
- first_name: Yong
  full_name: Zuo, Yong
  last_name: Zuo
- first_name: Chenyang
  full_name: Xie, Chenyang
  last_name: Xie
- first_name: Ke
  full_name: Xiao, Ke
  last_name: Xiao
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Jordi
  full_name: Llorca, Jordi
  last_name: Llorca
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Junfeng
  full_name: Liu, Junfeng
  last_name: Liu
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Li M, Liu Y, Zhang Y, et al. Effect of the annealing atmosphere on crystal
    phase and thermoelectric properties of copper sulfide. <i>ACS Nano</i>. 2021;15(3):4967–4978.
    doi:<a href="https://doi.org/10.1021/acsnano.0c09866">10.1021/acsnano.0c09866</a>
  apa: Li, M., Liu, Y., Zhang, Y., Han, X., Zhang, T., Zuo, Y., … Cabot, A. (2021).
    Effect of the annealing atmosphere on crystal phase and thermoelectric properties
    of copper sulfide. <i>ACS Nano</i>. American Chemical Society . <a href="https://doi.org/10.1021/acsnano.0c09866">https://doi.org/10.1021/acsnano.0c09866</a>
  chicago: Li, Mengyao, Yu Liu, Yu Zhang, Xu Han, Ting Zhang, Yong Zuo, Chenyang Xie,
    et al. “Effect of the Annealing Atmosphere on Crystal Phase and Thermoelectric
    Properties of Copper Sulfide.” <i>ACS Nano</i>. American Chemical Society , 2021.
    <a href="https://doi.org/10.1021/acsnano.0c09866">https://doi.org/10.1021/acsnano.0c09866</a>.
  ieee: M. Li <i>et al.</i>, “Effect of the annealing atmosphere on crystal phase
    and thermoelectric properties of copper sulfide,” <i>ACS Nano</i>, vol. 15, no.
    3. American Chemical Society , pp. 4967–4978, 2021.
  ista: Li M, Liu Y, Zhang Y, Han X, Zhang T, Zuo Y, Xie C, Xiao K, Arbiol J, Llorca
    J, Ibáñez M, Liu J, Cabot A. 2021. Effect of the annealing atmosphere on crystal
    phase and thermoelectric properties of copper sulfide. ACS Nano. 15(3), 4967–4978.
  mla: Li, Mengyao, et al. “Effect of the Annealing Atmosphere on Crystal Phase and
    Thermoelectric Properties of Copper Sulfide.” <i>ACS Nano</i>, vol. 15, no. 3,
    American Chemical Society , 2021, pp. 4967–4978, doi:<a href="https://doi.org/10.1021/acsnano.0c09866">10.1021/acsnano.0c09866</a>.
  short: M. Li, Y. Liu, Y. Zhang, X. Han, T. Zhang, Y. Zuo, C. Xie, K. Xiao, J. Arbiol,
    J. Llorca, M. Ibáñez, J. Liu, A. Cabot, ACS Nano 15 (2021) 4967–4978.
corr_author: '1'
date_created: 2021-03-10T20:12:45Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2024-10-09T21:04:04Z
day: '01'
department:
- _id: MaIb
doi: 10.1021/acsnano.0c09866
external_id:
  isi:
  - '000634569100106'
  pmid:
  - '33645986'
intvolume: '        15'
isi: 1
issue: '3'
keyword:
- General Engineering
- General Physics and Astronomy
- General Materials Science
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://upcommons.upc.edu/bitstream/handle/2117/363528/Pb%20mengyao.pdf?sequence=1&isAllowed=y
month: '03'
oa: 1
oa_version: Submitted Version
page: 4967–4978
pmid: 1
publication: ACS Nano
publication_identifier:
  eissn:
  - 1936-086X
  issn:
  - 1936-0851
publication_status: published
publisher: 'American Chemical Society '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Effect of the annealing atmosphere on crystal phase and thermoelectric properties
  of copper sulfide
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2021'
...
---
_id: '9239'
abstract:
- lang: eng
  text: 'A graph game proceeds as follows: two players move a token through a graph
    to produce a finite or infinite path, which determines the payoff of the game.
    We study bidding games in which in each turn, an auction determines which player
    moves the token. Bidding games were largely studied in combination with two variants
    of first-price auctions called “Richman” and “poorman” bidding. We study taxman
    bidding, which span the spectrum between the two. The game is parameterized by
    a constant : portion τ of the winning bid is paid to the other player, and portion  to
    the bank. While finite-duration (reachability) taxman games have been studied
    before, we present, for the first time, results on infinite-duration taxman games:
    we unify, generalize, and simplify previous equivalences between bidding games
    and a class of stochastic games called random-turn games.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Guy
  full_name: Avni, Guy
  id: 463C8BC2-F248-11E8-B48F-1D18A9856A87
  last_name: Avni
  orcid: 0000-0001-5588-8287
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Đorđe
  full_name: Žikelić, Đorđe
  last_name: Žikelić
citation:
  ama: Avni G, Henzinger TA, Žikelić Đ. Bidding mechanisms in graph games. <i>Journal
    of Computer and System Sciences</i>. 2021;119(8):133-144. doi:<a href="https://doi.org/10.1016/j.jcss.2021.02.008">10.1016/j.jcss.2021.02.008</a>
  apa: Avni, G., Henzinger, T. A., &#38; Žikelić, Đ. (2021). Bidding mechanisms in
    graph games. <i>Journal of Computer and System Sciences</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcss.2021.02.008">https://doi.org/10.1016/j.jcss.2021.02.008</a>
  chicago: Avni, Guy, Thomas A Henzinger, and Đorđe Žikelić. “Bidding Mechanisms in
    Graph Games.” <i>Journal of Computer and System Sciences</i>. Elsevier, 2021.
    <a href="https://doi.org/10.1016/j.jcss.2021.02.008">https://doi.org/10.1016/j.jcss.2021.02.008</a>.
  ieee: G. Avni, T. A. Henzinger, and Đ. Žikelić, “Bidding mechanisms in graph games,”
    <i>Journal of Computer and System Sciences</i>, vol. 119, no. 8. Elsevier, pp.
    133–144, 2021.
  ista: Avni G, Henzinger TA, Žikelić Đ. 2021. Bidding mechanisms in graph games.
    Journal of Computer and System Sciences. 119(8), 133–144.
  mla: Avni, Guy, et al. “Bidding Mechanisms in Graph Games.” <i>Journal of Computer
    and System Sciences</i>, vol. 119, no. 8, Elsevier, 2021, pp. 133–44, doi:<a href="https://doi.org/10.1016/j.jcss.2021.02.008">10.1016/j.jcss.2021.02.008</a>.
  short: G. Avni, T.A. Henzinger, Đ. Žikelić, Journal of Computer and System Sciences
    119 (2021) 133–144.
date_created: 2021-03-14T23:01:32Z
date_published: 2021-03-03T00:00:00Z
date_updated: 2025-07-10T11:53:57Z
day: '03'
department:
- _id: ToHe
doi: 10.1016/j.jcss.2021.02.008
external_id:
  arxiv:
  - '1905.03835'
  isi:
  - '000634149800009'
intvolume: '       119'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1905.03835
month: '03'
oa: 1
oa_version: Preprint
page: 133-144
publication: Journal of Computer and System Sciences
publication_identifier:
  eissn:
  - 1090-2724
  issn:
  - 0022-0000
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '6884'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Bidding mechanisms in graph games
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 119
year: '2021'
...
