---
OA_place: publisher
OA_type: hybrid
_id: '20857'
abstract:
- lang: eng
  text: 'Evolutionary games provide a flexible mathematical framework for many problems
    in biology and social evolution. Prisoners’ dilemma, and in particular, the important
    special case of donation games, represents social dilemmas where cooperation is
    mutually beneficial, yet defection is preferred by selfish agents. In evolutionary
    games on networks, the agents interact over a population structure. The existence
    of population structures that promote cooperative behavior is a fascinating and
    active research topic. Previous research establishes structures promoting cooperation
    in the limit of weak selection where the benefit-to-cost ratio β exceeds 1.5.
    The existence of such structures for medium and strong selection for 1 < ß < 2
    and for weak selection for 1 < ß < 1.5 has been a long-standing open question.
    First, we answer the open questions in the affirmative: For every selection strength
    and every ß > 1, we construct networks promoting cooperation. Second, we present
    a robustness result with respect to β and selection strength: Our structures promote
    cooperation for a range of these parameter values rather than specific parameter
    values. Finally, we supplement our theoretical results with simulation results
    on small population structures that show the effectiveness of our construction
    over well-studied population structures.'
acknowledgement: J.S. and K.C. were supported by the European Research Council CoG
  863818 (ForM-SMArt) and Austrian Science Fund (FWF) 10.55776/COE12.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jakub
  full_name: Svoboda, Jakub
  id: 130759D2-D7DD-11E9-87D2-DE0DE6697425
  last_name: Svoboda
  orcid: 0000-0002-1419-3267
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: Svoboda J, Chatterjee K. Promoters of cooperation in evolutionary games. <i>Proceedings
    of the National Academy of Sciences</i>. 2025;122(51):e2524109122. doi:<a href="https://doi.org/10.1073/pnas.2524109122">10.1073/pnas.2524109122</a>
  apa: Svoboda, J., &#38; Chatterjee, K. (2025). Promoters of cooperation in evolutionary
    games. <i>Proceedings of the National Academy of Sciences</i>. National Academy
    of Sciences. <a href="https://doi.org/10.1073/pnas.2524109122">https://doi.org/10.1073/pnas.2524109122</a>
  chicago: Svoboda, Jakub, and Krishnendu Chatterjee. “Promoters of Cooperation in
    Evolutionary Games.” <i>Proceedings of the National Academy of Sciences</i>. National
    Academy of Sciences, 2025. <a href="https://doi.org/10.1073/pnas.2524109122">https://doi.org/10.1073/pnas.2524109122</a>.
  ieee: J. Svoboda and K. Chatterjee, “Promoters of cooperation in evolutionary games,”
    <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 51. National
    Academy of Sciences, p. e2524109122, 2025.
  ista: Svoboda J, Chatterjee K. 2025. Promoters of cooperation in evolutionary games.
    Proceedings of the National Academy of Sciences. 122(51), e2524109122.
  mla: Svoboda, Jakub, and Krishnendu Chatterjee. “Promoters of Cooperation in Evolutionary
    Games.” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no.
    51, National Academy of Sciences, 2025, p. e2524109122, doi:<a href="https://doi.org/10.1073/pnas.2524109122">10.1073/pnas.2524109122</a>.
  short: J. Svoboda, K. Chatterjee, Proceedings of the National Academy of Sciences
    122 (2025) e2524109122.
corr_author: '1'
date_created: 2025-12-28T23:01:26Z
date_published: 2025-12-15T00:00:00Z
date_updated: 2026-02-16T12:34:04Z
day: '15'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1073/pnas.2524109122
ec_funded: 1
external_id:
  pmid:
  - '41397136'
file:
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  date_created: 2025-12-29T09:36:50Z
  date_updated: 2025-12-29T09:36:50Z
  file_id: '20860'
  file_name: 2025_PNAS_Svoboda.pdf
  file_size: 2308124
  relation: main_file
  success: 1
file_date_updated: 2025-12-29T09:36:50Z
has_accepted_license: '1'
intvolume: '       122'
issue: '51'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: e2524109122
pmid: 1
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Promoters of cooperation in evolutionary games
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 122
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20866'
abstract:
- lang: eng
  text: In this work, we present hypernode automata as a specification formalism for
    hyperproperties of systems whose executions may be misaligned among themselves,
    such as concurrent systems. These automata consist of nodes labeled with hypernode
    logic formulas and transitions marked with synchronizing actions. Hypernode logic
    formulas establish relations between sequences of variable values among different
    system executions. This logic enables both synchronous and asynchronous analysis
    of traces. In its asynchronous view on execution traces, hypernode formulas establish
    relations on the order of value changes for each variable without correlating
    their timing. In both views, the analysis of different execution traces is synchronized
    through the transitions of hypernode automata. By combining logic’s declarative
    nature with automata’s procedural power, hypernode automata seamlessly integrate
    asynchronicity requirements at the node level with synchronicity between node
    transitions. We show that the model-checking problem for hypernode automata is
    decidable for specifications where each node specifies either a synchronous or
    an asynchronous requirement for the system’s executions, but not both.
acknowledgement: This work was supported in part by the Austrian Science Fund (FWF)
  SFB project SpyCoDe 10.55776/F85, by the FWF projects ZK-35 and W1255-N23, and by
  the ERC Advanced Grant VAMOS 101020093. Open access funding provided by Institute
  of Science and Technology (IST Austria).
article_number: '43'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Ezio
  full_name: Bartocci, Ezio
  last_name: Bartocci
- first_name: Marek
  full_name: Chalupa, Marek
  id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
  last_name: Chalupa
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Dejan
  full_name: Nickovic, Dejan
  id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
  last_name: Nickovic
- first_name: Ana
  full_name: Oliveira da Costa, Ana
  id: f347ec37-6676-11ee-b395-a888cb7b4fb4
  last_name: Oliveira da Costa
  orcid: 0000-0002-8741-5799
citation:
  ama: Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. Hypernode
    automata. <i>Acta Informatica</i>. 2025;62(4). doi:<a href="https://doi.org/10.1007/s00236-025-00509-8">10.1007/s00236-025-00509-8</a>
  apa: Bartocci, E., Chalupa, M., Henzinger, T. A., Nickovic, D., &#38; Oliveira da
    Costa, A. (2025). Hypernode automata. <i>Acta Informatica</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s00236-025-00509-8">https://doi.org/10.1007/s00236-025-00509-8</a>
  chicago: Bartocci, Ezio, Marek Chalupa, Thomas A Henzinger, Dejan Nickovic, and
    Ana Oliveira da Costa. “Hypernode Automata.” <i>Acta Informatica</i>. Springer
    Nature, 2025. <a href="https://doi.org/10.1007/s00236-025-00509-8">https://doi.org/10.1007/s00236-025-00509-8</a>.
  ieee: E. Bartocci, M. Chalupa, T. A. Henzinger, D. Nickovic, and A. Oliveira da
    Costa, “Hypernode automata,” <i>Acta Informatica</i>, vol. 62, no. 4. Springer
    Nature, 2025.
  ista: Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. 2025.
    Hypernode automata. Acta Informatica. 62(4), 43.
  mla: Bartocci, Ezio, et al. “Hypernode Automata.” <i>Acta Informatica</i>, vol.
    62, no. 4, 43, Springer Nature, 2025, doi:<a href="https://doi.org/10.1007/s00236-025-00509-8">10.1007/s00236-025-00509-8</a>.
  short: E. Bartocci, M. Chalupa, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa,
    Acta Informatica 62 (2025).
corr_author: '1'
date_created: 2025-12-29T12:07:12Z
date_published: 2025-12-09T00:00:00Z
date_updated: 2026-01-05T12:27:41Z
day: '09'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/s00236-025-00509-8
ec_funded: 1
external_id:
  arxiv:
  - '2305.02836'
file:
- access_level: open_access
  checksum: 06ed45a1218ad8464818803ae2968aaf
  content_type: application/pdf
  creator: dernst
  date_created: 2026-01-05T12:26:43Z
  date_updated: 2026-01-05T12:26:43Z
  file_id: '20944'
  file_name: 2025_ActaInformatica_Bartocci.pdf
  file_size: 7117003
  relation: main_file
  success: 1
file_date_updated: 2026-01-05T12:26:43Z
has_accepted_license: '1'
intvolume: '        62'
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 34a1b658-11ca-11ed-8bc3-c75229f0241e
  grant_number: F8502
  name: Interface Theory for Security and Privacy
publication: Acta Informatica
publication_identifier:
  eissn:
  - 1432-0525
  issn:
  - 0001-5903
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '14405'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Hypernode automata
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20867'
abstract:
- lang: eng
  text: We discuss the embeddability of subspaces of the Gromov–Hausdorff space, which
    consists of isometry classes of compact metric spaces endowed with the Gromov–Hausdorff
    distance, into Hilbert spaces. These embeddings are particularly valuable for
    applications to topological data analysis. We prove that its subspace consisting
    of metric spaces with at most n points has asymptotic dimension n(n−1)∕2. Thus,
    there exists a coarse embedding of that space into a Hilbert space. On the contrary,
    if the number of points is not bounded, then the subspace cannot be coarsely embedded
    into any uniformly convex Banach space and so, in particular, into any Hilbert
    space. Furthermore, we prove that, even if we restrict to finite metric spaces
    whose diameter is bounded by some constant, the subspace still cannot be bi-Lipschitz
    embedded into any finite-dimensional Hilbert space. We obtain both nonembeddability
    results by finding obstructions to coarse and bi-Lipschitz embeddings in families
    of isometry classes of finite subsets of the real line endowed with the Euclidean–Hausdorff
    distance.
acknowledgement: "The author was supported by the FWF Grant, Project number I4245-N35.
  The author would like to thank Thomas Weighill for the helpful discussions around
  Theorem 3.10, and Takamitsu Yamauchi for bringing to my attention the fundamental
  reference [35]. Furthermore, the author\r\nis thankful for the detailed and helpful
  comments of the reviewer of this manuscript."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nicolò
  full_name: Zava, Nicolò
  id: c8b3499c-7a77-11eb-b046-aa368cbbf2ad
  last_name: Zava
  orcid: 0000-0001-8686-1888
citation:
  ama: Zava N. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
    space into Hilbert spaces. <i>Algebraic &#38; Geometric Topology</i>. 2025;25(8):5153-5174.
    doi:<a href="https://doi.org/10.2140/agt.2025.25.5153">10.2140/agt.2025.25.5153</a>
  apa: Zava, N. (2025). Coarse and bi-Lipschitz embeddability of subspaces of the
    Gromov–Hausdorff space into Hilbert spaces. <i>Algebraic &#38; Geometric Topology</i>.
    Mathematical Sciences Publishers. <a href="https://doi.org/10.2140/agt.2025.25.5153">https://doi.org/10.2140/agt.2025.25.5153</a>
  chicago: Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the
    Gromov–Hausdorff Space into Hilbert Spaces.” <i>Algebraic &#38; Geometric Topology</i>.
    Mathematical Sciences Publishers, 2025. <a href="https://doi.org/10.2140/agt.2025.25.5153">https://doi.org/10.2140/agt.2025.25.5153</a>.
  ieee: N. Zava, “Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
    space into Hilbert spaces,” <i>Algebraic &#38; Geometric Topology</i>, vol. 25,
    no. 8. Mathematical Sciences Publishers, pp. 5153–5174, 2025.
  ista: Zava N. 2025. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
    space into Hilbert spaces. Algebraic &#38; Geometric Topology. 25(8), 5153–5174.
  mla: Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the Gromov–Hausdorff
    Space into Hilbert Spaces.” <i>Algebraic &#38; Geometric Topology</i>, vol. 25,
    no. 8, Mathematical Sciences Publishers, 2025, pp. 5153–74, doi:<a href="https://doi.org/10.2140/agt.2025.25.5153">10.2140/agt.2025.25.5153</a>.
  short: N. Zava, Algebraic &#38; Geometric Topology 25 (2025) 5153–5174.
corr_author: '1'
date_created: 2025-12-29T12:09:09Z
date_published: 2025-11-20T00:00:00Z
date_updated: 2026-01-05T12:19:09Z
day: '20'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.2140/agt.2025.25.5153
external_id:
  arxiv:
  - '2303.04730'
file:
- access_level: open_access
  checksum: 1e05b4f17a44500ae1ae1e21bc636f6a
  content_type: application/pdf
  creator: dernst
  date_created: 2026-01-05T12:16:38Z
  date_updated: 2026-01-05T12:16:38Z
  file_id: '20943'
  file_name: 2025_AlgebraicGeomTopology_Zava.pdf
  file_size: 574389
  relation: main_file
  success: 1
file_date_updated: 2026-01-05T12:16:38Z
has_accepted_license: '1'
intvolume: '        25'
issue: '8'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 5153-5174
project:
- _id: 26AD5D90-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I04245
  name: Algebraic Footprints of Geometric Features in Homology
publication: Algebraic & Geometric Topology
publication_identifier:
  eissn:
  - 1472-2739
  issn:
  - 1472-2747
publication_status: published
publisher: Mathematical Sciences Publishers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff
  space into Hilbert spaces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2025'
...
---
OA_type: closed access
_id: '20868'
abstract:
- lang: eng
  text: Residents of low-latitude megacities face growing vulnerability to humid-heat
    stress under urbanization and global warming, yet limited research has assessed
    the morbidity burden of mental and behavioral disorders (MBDs) linked to humid-heat
    exposures in these cities. Here we quantify the hospital admissions of MBDs in
    Shanghai, a megacity of over 25 million inhabitants, attributable to humid heat,
    and project future burdens under various greenhouse gas (GHG)-emission and population
    scenarios. Humid heat drives a higher morbidity burden than high temperature alone,
    especially in humid-heat nights. Without population change, the humid-heat-related
    morbidity burden of MBDs would increase by 68.2% (95% empirical confidence interval
    56.7%–81.6%) under the highest-GHG-emission scenario by the 2090s, while 8,465
    (95% empirical confidence interval 6,928–10,053) cases would be avoided by reducing
    emissions to the lowest pathway. With projected population decline, the attributable
    hospital admissions will decrease toward century’s end. These findings highlight
    the benefit of GHG mitigation in reducing the growing MBD risks posed by extreme
    humid heat.
acknowledgement: 'This research was supported by the National Natural Science Foundation
  of China (grants 42288101 and 42175066) and Shanghai International Science and Technology
  Partnership Project (grant 21230780200). G.S. is supported by the China Brain Project
  (grant 2025ZD0215100), the National Natural Science Foundation of China (grant 82150710554),
  the Chinese National Key Project (grant 2023YFE0199700), the National Natural Science
  Foundation of China (grant W2541022) and the EC Horizon Europe: environMENTAL project.'
article_processing_charge: No
article_type: original
author:
- first_name: Chen
  full_name: Liang, Chen
  last_name: Liang
- first_name: Jiacan
  full_name: Yuan, Jiacan
  last_name: Yuan
- first_name: Renhe
  full_name: Zhang, Renhe
  last_name: Zhang
- first_name: Xu
  full_name: Tang, Xu
  last_name: Tang
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Emin
  full_name: Serin, Emin
  last_name: Serin
- first_name: Hedi
  full_name: Kebir, Hedi
  last_name: Kebir
- first_name: Tristram A.
  full_name: Lett, Tristram A.
  last_name: Lett
- first_name: Nilakshi
  full_name: Vaidya, Nilakshi
  last_name: Vaidya
- first_name: Jean-Charles
  full_name: Roy, Jean-Charles
  last_name: Roy
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
- first_name: Andreas
  full_name: Heinz, Andreas
  last_name: Heinz
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Roland
  full_name: Eils, Roland
  last_name: Eils
- first_name: Marcel
  full_name: Jentsch, Marcel
  last_name: Jentsch
- first_name: Ulrike-Helene
  full_name: Taron, Ulrike-Helene
  last_name: Taron
- first_name: Tatjana
  full_name: Schütz, Tatjana
  last_name: Schütz
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Andreas
  full_name: Meyer-Lindenberg, Andreas
  last_name: Meyer-Lindenberg
- first_name: Heike
  full_name: Tost, Heike
  last_name: Tost
- first_name: Nathalie
  full_name: Holz, Nathalie
  last_name: Holz
- first_name: Emanuel
  full_name: Schwarz, Emanuel
  last_name: Schwarz
- first_name: Argyris
  full_name: Stringaris, Argyris
  last_name: Stringaris
- first_name: Nina
  full_name: Christmann, Nina
  last_name: Christmann
- first_name: Karina
  full_name: Janson, Karina
  last_name: Janson
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Beke
  full_name: Seefried, Beke
  last_name: Seefried
- first_name: Rieke
  full_name: Aden, Rieke
  last_name: Aden
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Lars T.
  full_name: Westlye, Lars T.
  last_name: Westlye
- first_name: Dennis
  full_name: van der Meer, Dennis
  last_name: van der Meer
- first_name: Sara
  full_name: Fernández-Cabello, Sara
  last_name: Fernández-Cabello
- first_name: Rikka
  full_name: Kjelkenes, Rikka
  last_name: Kjelkenes
- first_name: Helga
  full_name: Ask, Helga
  last_name: Ask
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Mira
  full_name: Tschorn, Mira
  last_name: Tschorn
- first_name: Sarah Jane
  full_name: Böttger, Sarah Jane
  last_name: Böttger
- first_name: Andre
  full_name: Marquand, Andre
  last_name: Marquand
- first_name: Antoine
  full_name: Bernas, Antoine
  last_name: Bernas
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Jaime
  full_name: Gallego, Jaime
  last_name: Gallego
- first_name: Álvaro
  full_name: Pastor, Álvaro
  last_name: Pastor
- first_name: Guillem
  full_name: Feixas, Guillem
  last_name: Feixas
- first_name: Francisco José
  full_name: Eiroa-Orosa, Francisco José
  last_name: Eiroa-Orosa
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: Andreas J.
  full_name: Forstner, Andreas J.
  last_name: Forstner
- first_name: Isabelle
  full_name: Claus, Isabelle
  last_name: Claus
- first_name: Carina
  full_name: Mathey, Carina
  last_name: Mathey
- first_name: Stefanie
  full_name: Heilmann-Heimbach, Stefanie
  last_name: Heilmann-Heimbach
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Abigail
  full_name: Miller, Abigail
  last_name: Miller
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Karen
  full_name: Schmitt, Karen
  last_name: Schmitt
- first_name: Johannes
  full_name: Wilbertz, Johannes
  last_name: Wilbertz
- first_name: Myrto
  full_name: Patraskaki, Myrto
  last_name: Patraskaki
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Spase
  full_name: Petkoski, Spase
  last_name: Petkoski
- first_name: Anastasios-Polykarpos
  full_name: Athanasiadis, Anastasios-Polykarpos
  last_name: Athanasiadis
- first_name: Bernhard
  full_name: Spanlang, Bernhard
  last_name: Spanlang
- first_name: Charlie
  full_name: Pearmund, Charlie
  last_name: Pearmund
- first_name: Sören
  full_name: Hese, Sören
  last_name: Hese
- first_name: Paul
  full_name: Renner, Paul
  last_name: Renner
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Xiao
  full_name: Chang, Xiao
  last_name: Chang
- first_name: Yuxiang
  full_name: Dai, Yuxiang
  last_name: Dai
- first_name: Yunman
  full_name: Xia, Yunman
  last_name: Xia
- first_name: Yuzhu
  full_name: Li, Yuzhu
  last_name: Li
- first_name: Yanqing
  full_name: Zhang, Yanqing
  last_name: Zhang
- first_name: Vince
  full_name: Calhoun, Vince
  last_name: Calhoun
- first_name: Paul
  full_name: Thompson, Paul
  last_name: Thompson
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Sylvane
  full_name: Desrivières, Sylvane
  last_name: Desrivières
- first_name: Kofoworola
  full_name: Agunbiade, Kofoworola
  last_name: Agunbiade
- first_name: Xinyang
  full_name: Yu, Xinyang
  last_name: Yu
- first_name: Zuo
  full_name: Zhang, Zuo
  last_name: Zhang
- first_name: Di
  full_name: Chen, Di
  last_name: Chen
- first_name: Allan H.
  full_name: Young, Allan H.
  last_name: Young
- first_name: Ameli
  full_name: Schwalber, Ameli
  last_name: Schwalber
- first_name: Vanessa
  full_name: Köhler, Vanessa
  last_name: Köhler
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: George
  full_name: Ogoh, George
  last_name: Ogoh
- first_name: Tamara
  full_name: Schikowski, Tamara
  last_name: Schikowski
- first_name: Ragnhild
  full_name: Brandlistuen, Ragnhild
  last_name: Brandlistuen
citation:
  ama: Liang C, Yuan J, Zhang R, et al. Projecting the morbidity burden of mental
    and behavioral disorders associated with increasing humid heat in Shanghai. <i>Nature
    Mental Health</i>. 2025;3(12):1532-1544. doi:<a href="https://doi.org/10.1038/s44220-025-00519-y">10.1038/s44220-025-00519-y</a>
  apa: Liang, C., Yuan, J., Zhang, R., Tang, X., Schumann, G., Hitchen, E., … Brandlistuen,
    R. (2025). Projecting the morbidity burden of mental and behavioral disorders
    associated with increasing humid heat in Shanghai. <i>Nature Mental Health</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s44220-025-00519-y">https://doi.org/10.1038/s44220-025-00519-y</a>
  chicago: Liang, Chen, Jiacan Yuan, Renhe Zhang, Xu Tang, Gunter Schumann, Esther
    Hitchen, Elli Polemiti, et al. “Projecting the Morbidity Burden of Mental and
    Behavioral Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature
    Mental Health</i>. Springer Nature, 2025. <a href="https://doi.org/10.1038/s44220-025-00519-y">https://doi.org/10.1038/s44220-025-00519-y</a>.
  ieee: C. Liang <i>et al.</i>, “Projecting the morbidity burden of mental and behavioral
    disorders associated with increasing humid heat in Shanghai,” <i>Nature Mental
    Health</i>, vol. 3, no. 12. Springer Nature, pp. 1532–1544, 2025.
  ista: Liang C, Yuan J, Zhang R, Tang X, Schumann G, Hitchen E, Polemiti E, Serin
    E, Kebir H, Lett TA, Vaidya N, Roy J-C, Walter H, Heinz A, Ralser M, Twardziok
    S, Eils R, Jentsch M, Taron U-H, Schütz T, Schepanski K, Banaschewski T, Neidhart
    M, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris A, Christmann N,
    Janson K, Nees F, Neidhart M, Seefried B, Aden R, Andreassen OA, Westlye LT, van
    der Meer D, Fernández-Cabello S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger
    SJ, Marquand A, Bernas A, Novarino G, Slater M, Gallego J, Pastor Á, Feixas G,
    Eiroa-Orosa FJ, Nöthen MM, Forstner AJ, Claus I, Mathey C, Heilmann-Heimbach S,
    Hoffmann P, Miller A, Sommer P, Schmitt K, Wilbertz J, Patraskaki M, Jirsa V,
    Petkoski S, Athanasiadis A-P, Spanlang B, Pearmund C, Hese S, Renner P, Jia T,
    Chang X, Dai Y, Xia Y, Li Y, Zhang Y, Calhoun V, Thompson P, Clinton N, Desrivières
    S, Agunbiade K, Yu X, Zhang Z, Chen D, Young AH, Schwalber A, Köhler V, Stahl
    B, Ogoh G, Schikowski T, Brandlistuen R. 2025. Projecting the morbidity burden
    of mental and behavioral disorders associated with increasing humid heat in Shanghai.
    Nature Mental Health. 3(12), 1532–1544.
  mla: Liang, Chen, et al. “Projecting the Morbidity Burden of Mental and Behavioral
    Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature Mental
    Health</i>, vol. 3, no. 12, Springer Nature, 2025, pp. 1532–44, doi:<a href="https://doi.org/10.1038/s44220-025-00519-y">10.1038/s44220-025-00519-y</a>.
  short: C. Liang, J. Yuan, R. Zhang, X. Tang, G. Schumann, E. Hitchen, E. Polemiti,
    E. Serin, H. Kebir, T.A. Lett, N. Vaidya, J.-C. Roy, H. Walter, A. Heinz, M. Ralser,
    S. Twardziok, R. Eils, M. Jentsch, U.-H. Taron, T. Schütz, K. Schepanski, T. Banaschewski,
    M. Neidhart, A. Meyer-Lindenberg, H. Tost, N. Holz, E. Schwarz, A. Stringaris,
    N. Christmann, K. Janson, F. Nees, M. Neidhart, B. Seefried, R. Aden, O.A. Andreassen,
    L.T. Westlye, D. van der Meer, S. Fernández-Cabello, R. Kjelkenes, H. Ask, M.
    Rapp, M. Tschorn, S.J. Böttger, A. Marquand, A. Bernas, G. Novarino, M. Slater,
    J. Gallego, Á. Pastor, G. Feixas, F.J. Eiroa-Orosa, M.M. Nöthen, A.J. Forstner,
    I. Claus, C. Mathey, S. Heilmann-Heimbach, P. Hoffmann, A. Miller, P. Sommer,
    K. Schmitt, J. Wilbertz, M. Patraskaki, V. Jirsa, S. Petkoski, A.-P. Athanasiadis,
    B. Spanlang, C. Pearmund, S. Hese, P. Renner, T. Jia, X. Chang, Y. Dai, Y. Xia,
    Y. Li, Y. Zhang, V. Calhoun, P. Thompson, N. Clinton, S. Desrivières, K. Agunbiade,
    X. Yu, Z. Zhang, D. Chen, A.H. Young, A. Schwalber, V. Köhler, B. Stahl, G. Ogoh,
    T. Schikowski, R. Brandlistuen, Nature Mental Health 3 (2025) 1532–1544.
date_created: 2025-12-29T12:11:28Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-01-05T12:02:29Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-025-00519-y
intvolume: '         3'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
page: 1532-1544
project:
- _id: 349d1832-11ca-11ed-8bc3-d79b574010e0
  grant_number: '101057429'
  name: Reducing the impact of major environmental challenges on mental health
publication: Nature Mental Health
publication_identifier:
  issn:
  - 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Projecting the morbidity burden of mental and behavioral disorders associated
  with increasing humid heat in Shanghai
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2025'
...
---
OA_type: closed access
_id: '20869'
abstract:
- lang: eng
  text: "Premise: What maintains trait divergence in the face of gene flow? Two varieties
    of wild snapdragon (Antirrhinum majus) characterized by divergent flower color
    hybridize in their native range. Selection on flower color genes is indicated
    by sharp clines, but the selective agents have not been demonstrated. Although
    previous work has focused on pollinators, pigmentation genes can also contribute
    to abiotic stress tolerance. We hypothesized that pigmentation in A. majus mediates
    stress tolerance, which could contribute to hybrid zone maintenance through parental
    niche divergence or hybrid maladaptation. Specifically, we tested whether morphotype
    mediates drought tolerance in an experiment comparing magenta-flowered var. pseudomajus,
    yellow-flowered var. striatum, and their pink-flowered hybrid cross.\r\nMethods:
    We experimentally compared drought tolerance of each morphotype from allopatric
    crosses within and between varieties using three greenhouse treatments. Control
    plants were watered as needed, while drought-treated plants were watered half
    as often, either from the transplant stage (“early” drought), or from flowering
    onset (“late” drought).\r\nResults: Parental morphotypes responded identically
    to drought in fitness and most phenotypic traits. However, hybrids had lower survival
    (14%) under late drought stress than parental morphotypes (70%). All hybrids that
    flowered in the late drought treatment died, compared to ~20% of flowering parental
    morphotypes.\r\nConclusions: Hybrid maladaptation to abiotic stress could potentially
    contribute to flower color divergence in the face of gene flow in A. majus. Further
    research should test the relevance of our results to field conditions and explicitly
    probe the role of flower color genes in drought tolerance."
acknowledgement: Thank you to Doug Schemske and Nick Barton forcritically reviewing
  the manuscript, Beatriz Pablo Car-mona for assisting with data collection, Melinda
  Pickupand Eva Cereghetti for seedlings, and Louise Arathoon,Ksenia Khudiakova, Georg
  Rieckh, Daria Shiplina, andAnja Westram for help with experimental maintenance.We
  sincerely thank the Associate Editor Brenda Grewelland two anonymous reviewers for
  their thoughtfulcomments and suggestions, which substantially improved the clarity
  and quality of our manuscript. C.B. receivedfunding from the European Union's Horizon
  2020 researchand innovation programme under the Marie Skłodowska‐Curie Grant Agreement
  No. 754411
article_number: e70129
article_processing_charge: No
article_type: original
author:
- first_name: Alexandre
  full_name: Fuster‐Calvo, Alexandre
  last_name: Fuster‐Calvo
- first_name: Coline C.
  full_name: Jaworski, Coline C.
  last_name: Jaworski
- first_name: Thomas
  full_name: Ellis, Thomas
  id: 3153D6D4-F248-11E8-B48F-1D18A9856A87
  last_name: Ellis
  orcid: 0000-0002-8511-0254
- first_name: Carina
  full_name: Baskett, Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
citation:
  ama: Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. Reduced fitness under drought
    stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors.
    <i>American Journal of Botany</i>. 2025;112(12). doi:<a href="https://doi.org/10.1002/ajb2.70129">10.1002/ajb2.70129</a>
  apa: Fuster‐Calvo, A., Jaworski, C. C., Ellis, T., &#38; Baskett, C. (2025). Reduced
    fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with
    divergent flower colors. <i>American Journal of Botany</i>. Wiley. <a href="https://doi.org/10.1002/ajb2.70129">https://doi.org/10.1002/ajb2.70129</a>
  chicago: Fuster‐Calvo, Alexandre, Coline C. Jaworski, Thomas Ellis, and Carina Baskett.
    “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties
    with Divergent Flower Colors.” <i>American Journal of Botany</i>. Wiley, 2025.
    <a href="https://doi.org/10.1002/ajb2.70129">https://doi.org/10.1002/ajb2.70129</a>.
  ieee: A. Fuster‐Calvo, C. C. Jaworski, T. Ellis, and C. Baskett, “Reduced fitness
    under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent
    flower colors,” <i>American Journal of Botany</i>, vol. 112, no. 12. Wiley, 2025.
  ista: Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. 2025. Reduced fitness under
    drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower
    colors. American Journal of Botany. 112(12), e70129.
  mla: Fuster‐Calvo, Alexandre, et al. “Reduced Fitness under Drought Stress in F1
    Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” <i>American
    Journal of Botany</i>, vol. 112, no. 12, e70129, Wiley, 2025, doi:<a href="https://doi.org/10.1002/ajb2.70129">10.1002/ajb2.70129</a>.
  short: A. Fuster‐Calvo, C.C. Jaworski, T. Ellis, C. Baskett, American Journal of
    Botany 112 (2025).
date_created: 2025-12-29T12:14:26Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-01-05T11:56:22Z
day: '01'
department:
- _id: NiBa
doi: 10.1002/ajb2.70129
ec_funded: 1
external_id:
  pmid:
  - '41327576 '
intvolume: '       112'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: American Journal of Botany
publication_identifier:
  eissn:
  - 1537-2197
  issn:
  - 0002-9122
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/Alex-Fuster/hybrids_drought
scopus_import: '1'
status: public
title: Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties
  with divergent flower colors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20924'
abstract:
- lang: eng
  text: "Pioneer transcription factors (TFs) possess the ability to read out DNA motifs
    embedded within nucleosomes, driving changes in gene expression during cellular
    differentiation and reprogramming. Here, we present selected engagement on nucleosome
    sequencing (SeEN-seq), a protocol designed to systematically identify potential
    TF-binding sites on the nucleosome. We describe steps for nucleosome library assembly,
    SeEN-seq assay, and cryoelectron microscopy (cryo-EM) sample preparation. This
    protocol facilitates the preparation of homogeneous pioneer TF-nucleosome complexes
    for cryo-EM structure determination using single-particle analysis.\r\nFor complete
    details on the use and execution of this protocol, please refer to Michael et
    al.1"
acknowledgement: We thank R.H. Kim, A. Casper, and R. Gautsch for sequencing at the
  NGS facility (RRID:SCR_025746). K.T. is an Honorary Professor at the Department
  of Biology, Ludwig-Maximilians-University, Munich, Germany. This study was funded
  by European Research Council grant ERC-CoG-818556 TotipotentZygotChrom (K.T.), Max
  Planck Society (K.T.), and ERC Starting Grant “ChromaChrono” 101162145 (A.K.M.).
article_number: '104295'
article_processing_charge: Yes
article_type: original
author:
- first_name: Wataru
  full_name: Kobayashi, Wataru
  last_name: Kobayashi
- first_name: Alicia
  full_name: Michael, Alicia
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
  orcid: 0000-0002-6080-839X
- first_name: Siwat
  full_name: Ruangroengkulrith, Siwat
  last_name: Ruangroengkulrith
- first_name: Maximilian
  full_name: Kümmecke, Maximilian
  last_name: Kümmecke
- first_name: Kikuë
  full_name: Tachibana, Kikuë
  last_name: Tachibana
citation:
  ama: Kobayashi W, Michael AK, Ruangroengkulrith S, Kümmecke M, Tachibana K. Protocol
    for integrative analysis of transcription factor-nucleosome interactions using
    SeEN-seq and cryo-EM structure determination. <i>STAR Protocols</i>. 2025;7. doi:<a
    href="https://doi.org/10.1016/j.xpro.2025.104295">10.1016/j.xpro.2025.104295</a>
  apa: Kobayashi, W., Michael, A. K., Ruangroengkulrith, S., Kümmecke, M., &#38; Tachibana,
    K. (2025). Protocol for integrative analysis of transcription factor-nucleosome
    interactions using SeEN-seq and cryo-EM structure determination. <i>STAR Protocols</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.xpro.2025.104295">https://doi.org/10.1016/j.xpro.2025.104295</a>
  chicago: Kobayashi, Wataru, Alicia K. Michael, Siwat Ruangroengkulrith, Maximilian
    Kümmecke, and Kikuë Tachibana. “Protocol for Integrative Analysis of Transcription
    Factor-Nucleosome Interactions Using SeEN-Seq and Cryo-EM Structure Determination.”
    <i>STAR Protocols</i>. Elsevier, 2025. <a href="https://doi.org/10.1016/j.xpro.2025.104295">https://doi.org/10.1016/j.xpro.2025.104295</a>.
  ieee: W. Kobayashi, A. K. Michael, S. Ruangroengkulrith, M. Kümmecke, and K. Tachibana,
    “Protocol for integrative analysis of transcription factor-nucleosome interactions
    using SeEN-seq and cryo-EM structure determination,” <i>STAR Protocols</i>, vol.
    7. Elsevier, 2025.
  ista: Kobayashi W, Michael AK, Ruangroengkulrith S, Kümmecke M, Tachibana K. 2025.
    Protocol for integrative analysis of transcription factor-nucleosome interactions
    using SeEN-seq and cryo-EM structure determination. STAR Protocols. 7, 104295.
  mla: Kobayashi, Wataru, et al. “Protocol for Integrative Analysis of Transcription
    Factor-Nucleosome Interactions Using SeEN-Seq and Cryo-EM Structure Determination.”
    <i>STAR Protocols</i>, vol. 7, 104295, Elsevier, 2025, doi:<a href="https://doi.org/10.1016/j.xpro.2025.104295">10.1016/j.xpro.2025.104295</a>.
  short: W. Kobayashi, A.K. Michael, S. Ruangroengkulrith, M. Kümmecke, K. Tachibana,
    STAR Protocols 7 (2025).
corr_author: '1'
date_created: 2026-01-04T23:01:33Z
date_published: 2025-12-26T00:00:00Z
date_updated: 2026-01-05T11:16:11Z
day: '26'
department:
- _id: AlMi
doi: 10.1016/j.xpro.2025.104295
external_id:
  pmid:
  - '41455105'
has_accepted_license: '1'
intvolume: '         7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.xpro.2025.104295
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9136c684-16d5-11f0-9cad-91c0177b365f
  grant_number: '101162145'
  name: Circadian structural transitions of chromatin
publication: STAR Protocols
publication_identifier:
  eissn:
  - 2666-1667
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Protocol for integrative analysis of transcription factor-nucleosome interactions
  using SeEN-seq and cryo-EM structure determination
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20925'
abstract:
- lang: eng
  text: 'We prove normal typicality and dynamical typicality for a (centered) random
    block-band matrix model with block-dependent variances. A key feature of our model
    is that we achieve intermediate equilibration times, an aspect that has not been
    proven rigorously in any model before. Our proof builds on recently established
    concentration estimates for products of resolvents of Wigner type random matrices
    (Erdős and Riabov in Commun Math Phys 405(12): 282, 2024) and an intricate analysis
    of the deterministic approximation.'
acknowledgement: L.E. and J.H. are supported by the ERC Advanced Grant “RMTBeyond”
  No. 101020331. Moreover, J.H. acknowledges (partial) financial support by the ERC
  Consolidator Grant “ProbQuant” (jointly with the Swiss State Secretariat for Education,
  Research and Innovation). C.V. was (partially) supported by the German Academic
  Scholarship Foundation and the Deutsche Forschungsgemeinschaft (DFG, German Research
  Foundation) – TRR 352 – Project-ID 470903074. Moreover, C.V. acknowledges (partial)
  financial support by the ERC Starting Grant “FermiMath" No. 101040991 and the ERC
  Consolidator Grant “RAMBAS” No. 10104424, funded by the European Union. Open access
  funding provided by Institute of Science and Technology (IST Austria).
article_number: '5'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Sven Joscha
  full_name: Henheik, Sven Joscha
  id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
  last_name: Henheik
  orcid: 0000-0003-1106-327X
- first_name: Cornelia
  full_name: Vogel, Cornelia
  id: 1cd0554a-ea28-11f0-9f40-ff76440883cd
  last_name: Vogel
citation:
  ama: Erdös L, Henheik SJ, Vogel C. Normal typicality and dynamical typicality for
    a random block-band matrix model. <i>Letters in Mathematical Physics</i>. 2025;116.
    doi:<a href="https://doi.org/10.1007/s11005-025-02037-5">10.1007/s11005-025-02037-5</a>
  apa: Erdös, L., Henheik, S. J., &#38; Vogel, C. (2025). Normal typicality and dynamical
    typicality for a random block-band matrix model. <i>Letters in Mathematical Physics</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s11005-025-02037-5">https://doi.org/10.1007/s11005-025-02037-5</a>
  chicago: Erdös, László, Sven Joscha Henheik, and Cornelia Vogel. “Normal Typicality
    and Dynamical Typicality for a Random Block-Band Matrix Model.” <i>Letters in
    Mathematical Physics</i>. Springer Nature, 2025. <a href="https://doi.org/10.1007/s11005-025-02037-5">https://doi.org/10.1007/s11005-025-02037-5</a>.
  ieee: L. Erdös, S. J. Henheik, and C. Vogel, “Normal typicality and dynamical typicality
    for a random block-band matrix model,” <i>Letters in Mathematical Physics</i>,
    vol. 116. Springer Nature, 2025.
  ista: Erdös L, Henheik SJ, Vogel C. 2025. Normal typicality and dynamical typicality
    for a random block-band matrix model. Letters in Mathematical Physics. 116, 5.
  mla: Erdös, László, et al. “Normal Typicality and Dynamical Typicality for a Random
    Block-Band Matrix Model.” <i>Letters in Mathematical Physics</i>, vol. 116, 5,
    Springer Nature, 2025, doi:<a href="https://doi.org/10.1007/s11005-025-02037-5">10.1007/s11005-025-02037-5</a>.
  short: L. Erdös, S.J. Henheik, C. Vogel, Letters in Mathematical Physics 116 (2025).
corr_author: '1'
date_created: 2026-01-04T23:01:33Z
date_published: 2025-12-26T00:00:00Z
date_updated: 2026-01-05T11:22:25Z
day: '26'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1007/s11005-025-02037-5
ec_funded: 1
external_id:
  pmid:
  - '41459414'
has_accepted_license: '1'
intvolume: '       116'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s11005-025-02037-5
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication: Letters in Mathematical Physics
publication_identifier:
  eissn:
  - 1573-0530
  issn:
  - 0377-9017
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Normal typicality and dynamical typicality for a random block-band matrix model
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 116
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20926'
abstract:
- lang: eng
  text: Most current machine learning interatomic potentials (MLIPs) rely on short-range
    approximations, without explicit treatment of long-range electrostatics. To address
    this, we recently developed the Latent Ewald Summation (LES) method, which infers
    electrostatic interactions, polarization, and Born effective charges (BECs), just
    by learning from energy and force training data. Here, we present LES as a standalone
    library, compatible with any short-range MLIP, and demonstrate its integration
    with methods such as MACE, NequIP, Allegro, CACE, CHGNet, and UMA. We benchmark
    LES-enhanced models on distinct systems, including bulk water, polar dipeptides,
    and gold dimer adsorption on defective substrates, and show that LES not only
    captures correct electrostatics but also improves accuracy. Additionally, we scale
    LES to large and chemically diverse data by training MACELES-OFF on the SPICE
    set containing molecules and clusters, making a universal MLIP with electrostatics
    for organic systems, including biomolecules. MACELES-OFF is more accurate than
    its short-range counterpart (MACE-OFF) trained on the same data set, predicts
    dipoles and BECs reliably, and has better descriptions of bulk liquids. By enabling
    efficient long-range electrostatics without directly training on electrical properties,
    LES paves the way for electrostatic foundation MLIPs.
acknowledgement: Research reported in this publication was supported by the National
  Institute Of General Medical Sciences of the National Institutes of Health under
  Award Number R35GM159986. The content is solely the responsibility of the authors
  and does not necessarily represent the official views of the National Institutes
  of Health. D.K. and B.C. acknowledge funding from Toyota Research Institute Synthesis
  Advanced Research Challenge. T.J.I., D.S.K. and P.Z. acknowledge funding from BIDMaP
  Postdoctoral Fellowship. T.J.I. used resources of the National Energy Research Scientific
  Computing Center (NERSC), a Department of Energy Office of Science User Facility
  using NERSC award DOEERCAP0031751 ′GenAI@NERSC’. The authors thank Bowen Deng for
  valuable discussions on MatGL implementation, and thank Gabor Csanyi for stimulating
  discussions.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Dongjin
  full_name: Kim, Dongjin
  last_name: Kim
- first_name: Xiaoyu
  full_name: Wang, Xiaoyu
  id: 8dff9c62-32b0-11ee-9fa8-fc73025e10f3
  last_name: Wang
- first_name: Santiago
  full_name: Vargas, Santiago
  last_name: Vargas
- first_name: Peichen
  full_name: Zhong, Peichen
  last_name: Zhong
- first_name: Daniel S.
  full_name: King, Daniel S.
  last_name: King
- first_name: Theo Jaffrelot
  full_name: Inizan, Theo Jaffrelot
  last_name: Inizan
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
citation:
  ama: Kim D, Wang X, Vargas S, et al. A universal augmentation framework for long-range
    electrostatics in machine learning interatomic potentials. <i>Journal of Chemical
    Theory and Computation</i>. 2025;21(24):12709-12724. doi:<a href="https://doi.org/10.1021/acs.jctc.5c01400">10.1021/acs.jctc.5c01400</a>
  apa: Kim, D., Wang, X., Vargas, S., Zhong, P., King, D. S., Inizan, T. J., &#38;
    Cheng, B. (2025). A universal augmentation framework for long-range electrostatics
    in machine learning interatomic potentials. <i>Journal of Chemical Theory and
    Computation</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.jctc.5c01400">https://doi.org/10.1021/acs.jctc.5c01400</a>
  chicago: Kim, Dongjin, Xiaoyu Wang, Santiago Vargas, Peichen Zhong, Daniel S. King,
    Theo Jaffrelot Inizan, and Bingqing Cheng. “A Universal Augmentation Framework
    for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” <i>Journal
    of Chemical Theory and Computation</i>. American Chemical Society, 2025. <a href="https://doi.org/10.1021/acs.jctc.5c01400">https://doi.org/10.1021/acs.jctc.5c01400</a>.
  ieee: D. Kim <i>et al.</i>, “A universal augmentation framework for long-range electrostatics
    in machine learning interatomic potentials,” <i>Journal of Chemical Theory and
    Computation</i>, vol. 21, no. 24. American Chemical Society, pp. 12709–12724,
    2025.
  ista: Kim D, Wang X, Vargas S, Zhong P, King DS, Inizan TJ, Cheng B. 2025. A universal
    augmentation framework for long-range electrostatics in machine learning interatomic
    potentials. Journal of Chemical Theory and Computation. 21(24), 12709–12724.
  mla: Kim, Dongjin, et al. “A Universal Augmentation Framework for Long-Range Electrostatics
    in Machine Learning Interatomic Potentials.” <i>Journal of Chemical Theory and
    Computation</i>, vol. 21, no. 24, American Chemical Society, 2025, pp. 12709–24,
    doi:<a href="https://doi.org/10.1021/acs.jctc.5c01400">10.1021/acs.jctc.5c01400</a>.
  short: D. Kim, X. Wang, S. Vargas, P. Zhong, D.S. King, T.J. Inizan, B. Cheng, Journal
    of Chemical Theory and Computation 21 (2025) 12709–12724.
corr_author: '1'
date_created: 2026-01-04T23:01:33Z
date_published: 2025-12-10T00:00:00Z
date_updated: 2026-01-05T11:34:21Z
day: '10'
department:
- _id: GradSch
- _id: BiCh
doi: 10.1021/acs.jctc.5c01400
external_id:
  arxiv:
  - '2507.14302'
  pmid:
  - '41368735 '
intvolume: '        21'
issue: '24'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2507.14302
month: '12'
oa: 1
oa_version: Preprint
page: 12709-12724
pmid: 1
publication: Journal of Chemical Theory and Computation
publication_identifier:
  eissn:
  - 1549-9626
  issn:
  - 1549-9618
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: A universal augmentation framework for long-range electrostatics in machine
  learning interatomic potentials
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20927'
abstract:
- lang: eng
  text: Cavity-magnon polaritons are hybrid excitations from the interaction between
    cavity photons and magnons, the quanta of collective spin oscillations. Along
    with the tunability of the magnon-photon coupling strength, fast information transfer
    and conversion speed are desired in hybrid devices. This can be achieved utilizing
    the propagating nature of spin waves with nonzero momentum for their ultrafast
    time dynamics and reduced ohmic dissipation. Antiferromagnets are particularly
    interesting as hosts for magnons since stray-field interactions are minimized
    and they support multiple modes with distinctive magnetic-field behavior across
    the phase diagram. Chromium trichloride (CrCl3) is a van der Waals layered antiferromagnet
    having a strong easy-plane anisotropy and a weak in-plane easy-axis anisotropy.
    Despite some magnetic resonance studies, the impact of magnetic reorientation
    of spins in CrCl3 on the cavity-magnon-polariton interaction strength as a function
    of magnetic field remains largely unexplored. In this study, we investigate the
    coupling between magnons in CrCl3 and photons in a coplanar waveguide resonator
    as a function of magnetic field. In particular, we find that the magnon-photon
    coupling strength varies nonmonotonically and distinctly with the magnetic field
    for the acoustic and the optical magnons, which can be utilized to tune the magnon-photon
    coupling strength using an external magnetic field as a knob. We find the signature
    of spin-flop transition in the two harmonics of the cavity due to a stronger dispersive
    coupling between optical magnons and cavity photons at lower fields. Additionally,
    we find standing modes formed by spin waves with nonzero momentum associated with
    the two hybrid magnons when the external field is applied at an angle with the
    crystal plane. These modes do not undergo substantial coupling with the cavity
    mode unlike the antiferromagnetic modes and can be used as low-loss propagation
    channels in hybrid devices.
acknowledgement: We thank R. Vijayaraghavan, V. Singh, A. Kamra, A. Barman, M. Patankar,
  S. Kundu, S. Hazra, S. Sahu, A. Riswadkar, A. Bhattacharjee, and S. Das for helpful
  discussions and experimental assistance. We acknowledge the Swarnajayanti Fellowship
  of the Department of Science and Technology (for M.M.D.), DST Nanomission Grant
  No. SR/NM/NS-45/2016, SERB SUPRA Grant No. SPR/2019/001247, ONRG Grant No. N62909–18-1–2058,
  and the Department of Atomic Energy of the Government of India Grant No. 12-R&D-TFR5.10–0100
  for support.
article_number: '214443'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Supriya
  full_name: Mandal, Supriya
  last_name: Mandal
- first_name: Krishnendu
  full_name: Maji, Krishnendu
  id: 76bc9e9f-ba0b-11ee-8184-90edabd17a58
  last_name: Maji
- first_name: Lucky
  full_name: Kapoor, Lucky
  id: 84b9700b-15b2-11ec-abd3-831089e67615
  last_name: Kapoor
  orcid: 0000-0001-8319-2148
- first_name: Souvik
  full_name: Sasmal, Souvik
  last_name: Sasmal
- first_name: Soham
  full_name: Manni, Soham
  last_name: Manni
- first_name: John
  full_name: Jesudasan, John
  last_name: Jesudasan
- first_name: Pratap
  full_name: Raychaudhuri, Pratap
  last_name: Raychaudhuri
- first_name: Arumugam
  full_name: Thamizhavel, Arumugam
  last_name: Thamizhavel
- first_name: Mandar M.
  full_name: Deshmukh, Mandar M.
  last_name: Deshmukh
citation:
  ama: Mandal S, Maji K, Kapoor L, et al. Cavity based sensing of antiferromagnetic
    canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton
    system. <i>Physical Review B</i>. 2025;112(21). doi:<a href="https://doi.org/10.1103/bdd1-b8ys">10.1103/bdd1-b8ys</a>
  apa: Mandal, S., Maji, K., Kapoor, L., Sasmal, S., Manni, S., Jesudasan, J., … Deshmukh,
    M. M. (2025). Cavity based sensing of antiferromagnetic canting and nonzero-momentum
    spin waves in a van der Waals cavity-magnon-polariton system. <i>Physical Review
    B</i>. American Physical Society. <a href="https://doi.org/10.1103/bdd1-b8ys">https://doi.org/10.1103/bdd1-b8ys</a>
  chicago: Mandal, Supriya, Krishnendu Maji, Lucky Kapoor, Souvik Sasmal, Soham Manni,
    John Jesudasan, Pratap Raychaudhuri, Arumugam Thamizhavel, and Mandar M. Deshmukh.
    “Cavity Based Sensing of Antiferromagnetic Canting and Nonzero-Momentum Spin Waves
    in a van Der Waals Cavity-Magnon-Polariton System.” <i>Physical Review B</i>.
    American Physical Society, 2025. <a href="https://doi.org/10.1103/bdd1-b8ys">https://doi.org/10.1103/bdd1-b8ys</a>.
  ieee: S. Mandal <i>et al.</i>, “Cavity based sensing of antiferromagnetic canting
    and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system,”
    <i>Physical Review B</i>, vol. 112, no. 21. American Physical Society, 2025.
  ista: Mandal S, Maji K, Kapoor L, Sasmal S, Manni S, Jesudasan J, Raychaudhuri P,
    Thamizhavel A, Deshmukh MM. 2025. Cavity based sensing of antiferromagnetic canting
    and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system.
    Physical Review B. 112(21), 214443.
  mla: Mandal, Supriya, et al. “Cavity Based Sensing of Antiferromagnetic Canting
    and Nonzero-Momentum Spin Waves in a van Der Waals Cavity-Magnon-Polariton System.”
    <i>Physical Review B</i>, vol. 112, no. 21, 214443, American Physical Society,
    2025, doi:<a href="https://doi.org/10.1103/bdd1-b8ys">10.1103/bdd1-b8ys</a>.
  short: S. Mandal, K. Maji, L. Kapoor, S. Sasmal, S. Manni, J. Jesudasan, P. Raychaudhuri,
    A. Thamizhavel, M.M. Deshmukh, Physical Review B 112 (2025).
date_created: 2026-01-04T23:01:34Z
date_published: 2025-12-19T00:00:00Z
date_updated: 2026-01-05T10:07:04Z
day: '19'
department:
- _id: MaIb
- _id: JoFi
doi: 10.1103/bdd1-b8ys
external_id:
  arxiv:
  - '2512.05236'
intvolume: '       112'
issue: '21'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2512.05236
month: '12'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '20940'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin
  waves in a van der Waals cavity-magnon-polariton system
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2025'
...
---
OA_type: closed access
_id: '20928'
abstract:
- lang: eng
  text: The current work focuses on the performance of hydrodynamics and mass transfer
    in a microchannel. A hydrodynamic model is developed for a gas–liquid (CO2–water)
    system and slug flow pattern. For the first time in literature, a concept of pulsating
    velocity input is introduced in an enhanced cross-T-junction microchannel to study
    the mass transfer using the physical absorption mechanism in ANSYS FLUENT R2 2024.
    The mass transfer model is associated with the hydrodynamic model and some user-defined
    functions in FLUENT. This work demonstrates that incorporating obstructions and
    applying trapezoidal and sinusoidal wave inputs improve the CO2 absorption rate.
    The obtained data are further compared with the plain T-junction microchannel
    in terms of mass transfer coefficient. Solubility of CO2 in three different solvents
    (ethyl alcohol, water, and ethylene glycol) has been revealed in an enhanced cross
    T-junction microchannel at two different temperatures, i.e., 298.15 and 303.15 K.
    The numerical simulations illustrate that an increase in temperature has an adverse
    effect on the mass transfer rate.
acknowledgement: The authors are thankful for the financial support provided by the
  Ministry of Education, India, and MNNIT Allahabad, as well as for the necessary
  equipment, computing facilities, and overall support to carry out this study.
article_number: '122012'
article_processing_charge: No
article_type: original
author:
- first_name: Bushra
  full_name: Khatoon, Bushra
  last_name: Khatoon
- first_name: Vikas K.
  full_name: Chaudhary, Vikas K.
  last_name: Chaudhary
- first_name: Shoaib
  full_name: Kamil, Shoaib
  id: 185a19af-dc7d-11ea-9b2f-8eb2201959e9
  last_name: Kamil
- first_name: Shabih Ul
  full_name: Hasan, Shabih Ul
  last_name: Hasan
- first_name: M. Siraj
  full_name: Alam, M. Siraj
  last_name: Alam
citation:
  ama: 'Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. Enhanced mass transfer
    in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical
    simulation. <i>Physics of Fluids</i>. 2025;37(12). doi:<a href="https://doi.org/10.1063/5.0303132">10.1063/5.0303132</a>'
  apa: 'Khatoon, B., Chaudhary, V. K., Kamil, S., Hasan, S. U., &#38; Alam, M. S.
    (2025). Enhanced mass transfer in microgeometry using pulsating velocity inputs:
    Hydrodynamic analysis and numerical simulation. <i>Physics of Fluids</i>. AIP
    Publishing. <a href="https://doi.org/10.1063/5.0303132">https://doi.org/10.1063/5.0303132</a>'
  chicago: 'Khatoon, Bushra, Vikas K. Chaudhary, Shoaib Kamil, Shabih Ul Hasan, and
    M. Siraj Alam. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity
    Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of Fluids</i>.
    AIP Publishing, 2025. <a href="https://doi.org/10.1063/5.0303132">https://doi.org/10.1063/5.0303132</a>.'
  ieee: 'B. Khatoon, V. K. Chaudhary, S. Kamil, S. U. Hasan, and M. S. Alam, “Enhanced
    mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis
    and numerical simulation,” <i>Physics of Fluids</i>, vol. 37, no. 12. AIP Publishing,
    2025.'
  ista: 'Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. 2025. Enhanced mass
    transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis
    and numerical simulation. Physics of Fluids. 37(12), 122012.'
  mla: 'Khatoon, Bushra, et al. “Enhanced Mass Transfer in Microgeometry Using Pulsating
    Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of
    Fluids</i>, vol. 37, no. 12, 122012, AIP Publishing, 2025, doi:<a href="https://doi.org/10.1063/5.0303132">10.1063/5.0303132</a>.'
  short: B. Khatoon, V.K. Chaudhary, S. Kamil, S.U. Hasan, M.S. Alam, Physics of Fluids
    37 (2025).
date_created: 2026-01-04T23:01:34Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-01-05T10:54:15Z
day: '01'
department:
- _id: BjHo
doi: 10.1063/5.0303132
intvolume: '        37'
issue: '12'
language:
- iso: eng
month: '12'
oa_version: None
publication: Physics of Fluids
publication_identifier:
  eissn:
  - 1089-7666
  issn:
  - 1070-6631
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic
  analysis and numerical simulation'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20929'
abstract:
- lang: eng
  text: Insulin/insulin-like growth factor signaling inhibits FOXO transcription factors
    to control development, homeostasis, and aging. Here, we use proximity labeling
    to identify proteins interacting with the C. elegans FOXO DAF-16. We show that
    in well-fed, unstressed animals harboring active insulin signaling, DAF-16 forms
    a complex with the PAR-1/MARK serine/threonine kinase, a key regulator of cell
    polarity. PAR-1 inhibits DAF-16 accumulation and promotes DAF-16 phosphorylation
    at S249, at a conserved motif that PAR-1/human MARK2 phosphorylates in vitro.
    DAF-2 insulin-like receptor signaling stimulates DAF-16 S249 phosphorylation,
    suggesting DAF-2 activates PAR-1. DAF-2 also promotes PAR-1 expression by inhibiting
    DAF-16. PAR-1 knockdown, or DAF-16 S249A, prolong lifespan, whereas phosphomimetic
    DAF-16 S249D suppresses the longevity of daf-2 mutants. At low insulin signaling,
    DAF-16 proximity labeling highlights transcription factors, chromatin regulators,
    and DNA repair proteins. One interactor, the zinc finger/homeobox protein ZFH-2/ZFHX3,
    forms a complex with DAF-16 and prolongs lifespan. Our work provides entry points
    for hypothesis-driven studies of FOXO function and longevity.
acknowledged_ssus:
- _id: Bio
acknowledgement: We thank de Bono lab members for helpful comments on the manuscript,
  and the Mass Spec Facility at the Max Perutz Labs, notably WeiQiang Chen and Markus
  Hartl, for invaluable discussions and comments on mass spec analyses of worm samples.
  All LC-MS/MS analyses were performed on instruments of the Vienna BioCenter Core
  Facilities (VBCF). Microscopy was supported by the Scientific Services Units (SSU)
  of ISTA through resources provided by the Imaging & Optics Facility (IOF). We are
  grateful to Dr. Geraldine Seydoux (Johns Hopkins University) for worm strains and
  plasmids, and Dr. Seung-Jae V. Lee (KAIST) for RNAi clones. We are grateful to Ekaterina
  Lashmanova for designing the daf-16::TbID::mNG::3xFLAG knock-in construct and for
  her outstanding support in the lab. This work was supported by a Wellcome Investigator
  Award (209504/A/17/Z) to MdB and an ISTplus Fellowship to MA (Marie Sklodowska-Curie
  agreement No 754411).
article_number: '11355'
article_processing_charge: Yes
article_type: original
author:
- first_name: Murat
  full_name: Artan, Murat
  id: C407B586-6052-11E9-B3AE-7006E6697425
  last_name: Artan
  orcid: 0000-0001-8945-6992
- first_name: Hanna
  full_name: Schön, Hanna
  id: C8E17EDC-D7AA-11E9-B7B7-45ECE5697425
  last_name: Schön
- first_name: Mario
  full_name: De Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: De Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Artan M, Schön H, de Bono M. Proximity labeling of DAF-16 FOXO highlights aging
    regulatory proteins. <i>Nature Communications</i>. 2025;16. doi:<a href="https://doi.org/10.1038/s41467-025-66409-0">10.1038/s41467-025-66409-0</a>
  apa: Artan, M., Schön, H., &#38; de Bono, M. (2025). Proximity labeling of DAF-16
    FOXO highlights aging regulatory proteins. <i>Nature Communications</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41467-025-66409-0">https://doi.org/10.1038/s41467-025-66409-0</a>
  chicago: Artan, Murat, Hanna Schön, and Mario de Bono. “Proximity Labeling of DAF-16
    FOXO Highlights Aging Regulatory Proteins.” <i>Nature Communications</i>. Springer
    Nature, 2025. <a href="https://doi.org/10.1038/s41467-025-66409-0">https://doi.org/10.1038/s41467-025-66409-0</a>.
  ieee: M. Artan, H. Schön, and M. de Bono, “Proximity labeling of DAF-16 FOXO highlights
    aging regulatory proteins,” <i>Nature Communications</i>, vol. 16. Springer Nature,
    2025.
  ista: Artan M, Schön H, de Bono M. 2025. Proximity labeling of DAF-16 FOXO highlights
    aging regulatory proteins. Nature Communications. 16, 11355.
  mla: Artan, Murat, et al. “Proximity Labeling of DAF-16 FOXO Highlights Aging Regulatory
    Proteins.” <i>Nature Communications</i>, vol. 16, 11355, Springer Nature, 2025,
    doi:<a href="https://doi.org/10.1038/s41467-025-66409-0">10.1038/s41467-025-66409-0</a>.
  short: M. Artan, H. Schön, M. de Bono, Nature Communications 16 (2025).
corr_author: '1'
date_created: 2026-01-04T23:01:34Z
date_published: 2025-12-11T00:00:00Z
date_updated: 2026-01-05T11:00:03Z
day: '11'
ddc:
- '570'
department:
- _id: MaDe
doi: 10.1038/s41467-025-66409-0
ec_funded: 1
external_id:
  pmid:
  - '41381452'
file:
- access_level: open_access
  checksum: 748e2e003b878b85b6048d51621d6aae
  content_type: application/pdf
  creator: dernst
  date_created: 2026-01-05T10:58:28Z
  date_updated: 2026-01-05T10:58:28Z
  file_id: '20941'
  file_name: 2025_NatureComm_Artan.pdf
  file_size: 1642352
  relation: main_file
  success: 1
file_date_updated: 2026-01-05T10:58:28Z
has_accepted_license: '1'
intvolume: '        16'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 23870BE8-32DE-11EA-91FC-C7463DDC885E
  grant_number: 209504/A/17/Z
  name: Molecular mechanisms of neural circuit function
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Proximity labeling of DAF-16 FOXO highlights aging regulatory proteins
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20930'
abstract:
- lang: eng
  text: "Context. Beta Pictoris is an A-type star that hosts a complex planetary system
    with two massive gas giants and a prominent debris disc. Variable absorption lines
    in its stellar spectrum have been interpreted as signatures of exocomets – comet-like
    bodies transiting the star. Stellar flybys can gravitationally perturb objects
    in the outer comet reservoir, altering their orbits and potentially injecting
    them into the inner system, thereby triggering exocomet showers.\r\nAims. We assessed
    the contribution of stellar flybys to the observed exocomet activity by reconstructing
    the stellar encounter history of β Pictoris in the past and future.\r\nMethods.
    We used Gaia DR3 data, supplemented with radial velocities from complementary
    spectroscopic surveys, to compile a catalogue of stars currently within 80 pc
    of β Pictoris. Their orbits were integrated backwards and forwards in time in
    an axisymmetric Galactic potential (via the GALA package) to identify encounters
    within 2 pc of the system.\r\nResults. We identified 99 416 stars currently within
    80 pc of β Pictoris with resolved kinematics. Among these, 49 stars (including
    the eight components of five binaries) encounter β Pictoris within 2 pc between
    –1.5 Myr and +2 Myr. For four of the binaries, the centre-of-mass trajectories
    also pass within 2 pc. We estimated the sample to be more than 60% complete within
    0.5 Myr of today.\r\nConclusions. Despite β Pictoris being the eponym of its famous
    moving group, none of the identified encounters involved its moving group members;
    all are unrelated field stars. We found no encounter capable of shaping the observed
    disc structures, although stellar flybys may contribute to the long-term evolution
    of an Oort Cloud-like structure. Our catalogue constitutes the most complete reconstruction
    of the β Pictoris encounter history to date and provides a robust foundation for
    future dynamical simulations."
acknowledgement: We thank the referee for their suggestions and comments, which helped
  us improve the quality and clarity of the paper. JLGM and EV acknowledge the support
  from the Spanish Ministry of Science and Innovation/State Agency of Research (MCIN/AEI)
  under the grant PID2021-127289-NB-I00. ST acknowledges the funding from the European
  Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie
  grant agreement No. 101034413. AJM acknowledges support from the Swedish National
  Space Agency (Career Grant 2023-00146) and from the Swedish Research Council (Project
  Grant 2022-04043). JLGM also sincerely thanks AMP for his careful final reading
  of this manuscript. This work has made use of data from the European Space Agency
  (ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data
  Processing and Analysis Consortium (DPAC). Funding for the DPAC has been provided
  by national institutions, in particular the institutions participating in the Gaia
  Multilateral Agreement. We acknowledge the use of the public data products from
  RAVE (https://www.rave-survey.org), GALAH (https://galah-survey.org), APOGEE ((https://www.sdss.org)
  and LAMOST (http://www.lamost.org) surveys. This research has also made use of the
  SIMBAD database and the VizieR catalogue access tool, operated at CDS, Strasbourg,
  France, as well as the NASA Astrophysics Data System Bibliographic Services and
  the arXiv pre-print server operated by Cornell University. Computational analyses
  in this work relied extensively on the NumPy and SciPy libraries for numerical computing,
  matplotlib and seaborn for data visualization, and the Gala package for Galactic
  dynamics. This work also made use of Astropy, a community-developed core PYTHON
  package and an ecosystem of tools and resources for astronomy. We thank the developers
  and maintainers of these open-source resources for their invaluable contributions
  to the astronomical community.
article_number: A237
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: J. L.
  full_name: Gragera-Más, J. L.
  last_name: Gragera-Más
- first_name: Santiago
  full_name: Torres Rodriguez, Santiago
  id: a8df4360-4328-11ee-8f1a-e502d0c83fc2
  last_name: Torres Rodriguez
  orcid: 0000-0002-3150-8988
- first_name: A. J.
  full_name: Mustill, A. J.
  last_name: Mustill
- first_name: E.
  full_name: Villaver, E.
  last_name: Villaver
citation:
  ama: Gragera-Más JL, Torres Rodriguez S, Mustill AJ, Villaver E. A kinematic history
    of stellar encounters with Beta Pictoris. <i>Astronomy &#38; Astrophysics</i>.
    2025;704. doi:<a href="https://doi.org/10.1051/0004-6361/202555940">10.1051/0004-6361/202555940</a>
  apa: Gragera-Más, J. L., Torres Rodriguez, S., Mustill, A. J., &#38; Villaver, E.
    (2025). A kinematic history of stellar encounters with Beta Pictoris. <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202555940">https://doi.org/10.1051/0004-6361/202555940</a>
  chicago: Gragera-Más, J. L., Santiago Torres Rodriguez, A. J. Mustill, and E. Villaver.
    “A Kinematic History of Stellar Encounters with Beta Pictoris.” <i>Astronomy &#38;
    Astrophysics</i>. EDP Sciences, 2025. <a href="https://doi.org/10.1051/0004-6361/202555940">https://doi.org/10.1051/0004-6361/202555940</a>.
  ieee: J. L. Gragera-Más, S. Torres Rodriguez, A. J. Mustill, and E. Villaver, “A
    kinematic history of stellar encounters with Beta Pictoris,” <i>Astronomy &#38;
    Astrophysics</i>, vol. 704. EDP Sciences, 2025.
  ista: Gragera-Más JL, Torres Rodriguez S, Mustill AJ, Villaver E. 2025. A kinematic
    history of stellar encounters with Beta Pictoris. Astronomy &#38; Astrophysics.
    704, A237.
  mla: Gragera-Más, J. L., et al. “A Kinematic History of Stellar Encounters with
    Beta Pictoris.” <i>Astronomy &#38; Astrophysics</i>, vol. 704, A237, EDP Sciences,
    2025, doi:<a href="https://doi.org/10.1051/0004-6361/202555940">10.1051/0004-6361/202555940</a>.
  short: J.L. Gragera-Más, S. Torres Rodriguez, A.J. Mustill, E. Villaver, Astronomy
    &#38; Astrophysics 704 (2025).
date_created: 2026-01-04T23:01:34Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-02-16T12:15:07Z
day: '01'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.1051/0004-6361/202555940
ec_funded: 1
external_id:
  arxiv:
  - '2510.02509'
file:
- access_level: open_access
  checksum: 2fb4d5a1603043aa7931a31f2c180877
  content_type: application/pdf
  creator: dernst
  date_created: 2026-01-05T11:06:16Z
  date_updated: 2026-01-05T11:06:16Z
  file_id: '20942'
  file_name: 2025_AstronomyAstrophysics_GrageraMas.pdf
  file_size: 11021467
  relation: main_file
  success: 1
file_date_updated: 2026-01-05T11:06:16Z
has_accepted_license: '1'
intvolume: '       704'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: A kinematic history of stellar encounters with Beta Pictoris
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 704
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20931'
abstract:
- lang: eng
  text: "Context. Asymmetries in the observed rotational splittings of a multiplet
    contain information about the star’s rotation profile and internal magnetic field.
    Moreover, the frequency regularities of multiplets can be used for mode identification.
    However, to exploit this information, highly accurate theoretical predictions
    are needed.\r\n\r\nAims. We aim to quantify the difference in the predicted mode
    asymmetries between a 1D perturbative method and a 2D method that includes a 2D
    stellar structure model, which takes rotation into account. We then place these
    differences between 1D and 2D methods in the context of asteroseismic measurements
    of internal magnetic fields. We only focus on the asymmetries and not on possible
    additional frequency peaks that can arise when the magnetic and rotation axis
    are misaligned.\r\n\r\nMethods. We coupled the 1D pulsation codes GYRE and StORM
    to the 2D stellar structure code ESTER and compared the oscillation predictions
    with the results from the 2D TOP pulsation code. We focused on zero-age main-sequence
    models representative of rotating β Cephei pulsators spinning at up to 20 per
    cent of the critical Keplerian rotation rate. Specifically, we investigated low-radial-order
    gravity and pressure modes.\r\n\r\nResults. We find a generally good agreement
    between the oscillation frequencies resulting from the 1D and 2D pulsation codes.
    We report differences in predicted mode multiplet asymmetries of mostly below
    0.06 d−1. Since the magnetic asymmetries are small compared to the differences
    in the rotational asymmetries resulting from the 1D and 2D predictions, accurate
    measurements of the magnetic field are in most cases challenging.\r\n\r\nConclusions.
    Differences in the predicted mode asymmetries of a rotating star between 1D perturbative
    methods and 2D non-perturbative methods can greatly hinder accurate measurements
    of internal magnetic fields in main-sequence pulsators with low-order modes. Nevertheless,
    reasonably accurate measurements could be possible with npg ≥ 2 modes if the internal
    rotation is roughly below 10 per cent of the Keplerian critical rotation frequency
    for (aligned) magnetic fields of the order of a few hundred kilogauss. While the
    differences between the 1D and 2D frequency predictions are mostly too large for
    internal magnetic field detections, the rotational asymmetries predicted by StORM
    are in general accurate enough for asteroseismic modelling of the stellar rotation
    in main-sequence stars with identified low-order modes."
acknowledgement: 'We thank the anonymous referee for their comments on the manuscript,
  Dario Fritzewski for providing the distribution of fractions of critical rotation
  for the β Cephei sample, and Zhao Guo for the discussions. The research leading
  to these results has received funding from the European Research Council (ERC) under
  the Horizon Europe programme (Synergy Grant agreement N°101071505: 4D-STAR). While
  partially funded by the European Union, views and opinions expressed are however
  those of the authors only and do not necessarily reflect those of the European Union
  or the European Research Council. Neither the European Union nor the granting authority
  can be held responsible for them. V.V. acknowledges support from the Research Foundation
  Flanders (FWO) under grant agreement N°1156923N (PhD Fellowship). S.B.D. acknowledges
  funding from the European Union’s Horizon 2020 research and innovation programme
  under the Marie Skłodowska-Curie grant agreement N°101034413. L.B. gratefully acknowledges
  support from the European Research Council (ERC) under the Horizon Europe programme
  (Calcifer; Starting Grant agreement N°101165631). J.B., M.R., S.M. and J.S.G.M have
  been supported by CNES, focused on the preparation of the PLATO mission. Computations
  with ESTER and TOP have made use of the HPC resources from the CALMIP supercomputing
  centre (Grant 2023-P0107). This research made use of the numpy (Harris et al. 2020)
  and matplotlib (Hunter 2007) Python software packages.'
article_number: A336
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: J. S.G.
  full_name: Mombarg, J. S.G.
  last_name: Mombarg
- first_name: V.
  full_name: Vanlaer, V.
  last_name: Vanlaer
- first_name: Srijan B
  full_name: Das, Srijan B
  id: 9ce7c423-dacf-11ed-8942-e09c6cb27149
  last_name: Das
  orcid: 0000-0003-0896-7972
- first_name: M.
  full_name: Rieutord, M.
  last_name: Rieutord
- first_name: C.
  full_name: Aerts, C.
  last_name: Aerts
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
- first_name: S.
  full_name: Mathis, S.
  last_name: Mathis
- first_name: D. R.
  full_name: Reese, D. R.
  last_name: Reese
- first_name: J.
  full_name: Ballot, J.
  last_name: Ballot
citation:
  ama: Mombarg JSG, Vanlaer V, Das SB, et al. Is a 1D perturbative method sufficient
    for asteroseismic modelling of β Cephei pulsators? Implications for measurements
    of rotation and internal magnetic fields. <i>Astronomy &#38; Astrophysics</i>.
    2025;704. doi:<a href="https://doi.org/10.1051/0004-6361/202557247">10.1051/0004-6361/202557247</a>
  apa: Mombarg, J. S. G., Vanlaer, V., Das, S. B., Rieutord, M., Aerts, C., Bugnet,
    L. A., … Ballot, J. (2025). Is a 1D perturbative method sufficient for asteroseismic
    modelling of β Cephei pulsators? Implications for measurements of rotation and
    internal magnetic fields. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a
    href="https://doi.org/10.1051/0004-6361/202557247">https://doi.org/10.1051/0004-6361/202557247</a>
  chicago: Mombarg, J. S.G., V. Vanlaer, Srijan B Das, M. Rieutord, C. Aerts, Lisa
    Annabelle Bugnet, S. Mathis, D. R. Reese, and J. Ballot. “Is a 1D Perturbative
    Method Sufficient for Asteroseismic Modelling of β Cephei Pulsators? Implications
    for Measurements of Rotation and Internal Magnetic Fields.” <i>Astronomy &#38;
    Astrophysics</i>. EDP Sciences, 2025. <a href="https://doi.org/10.1051/0004-6361/202557247">https://doi.org/10.1051/0004-6361/202557247</a>.
  ieee: J. S. G. Mombarg <i>et al.</i>, “Is a 1D perturbative method sufficient for
    asteroseismic modelling of β Cephei pulsators? Implications for measurements of
    rotation and internal magnetic fields,” <i>Astronomy &#38; Astrophysics</i>, vol.
    704. EDP Sciences, 2025.
  ista: Mombarg JSG, Vanlaer V, Das SB, Rieutord M, Aerts C, Bugnet LA, Mathis S,
    Reese DR, Ballot J. 2025. Is a 1D perturbative method sufficient for asteroseismic
    modelling of β Cephei pulsators? Implications for measurements of rotation and
    internal magnetic fields. Astronomy &#38; Astrophysics. 704, A336.
  mla: Mombarg, J. S. G., et al. “Is a 1D Perturbative Method Sufficient for Asteroseismic
    Modelling of β Cephei Pulsators? Implications for Measurements of Rotation and
    Internal Magnetic Fields.” <i>Astronomy &#38; Astrophysics</i>, vol. 704, A336,
    EDP Sciences, 2025, doi:<a href="https://doi.org/10.1051/0004-6361/202557247">10.1051/0004-6361/202557247</a>.
  short: J.S.G. Mombarg, V. Vanlaer, S.B. Das, M. Rieutord, C. Aerts, L.A. Bugnet,
    S. Mathis, D.R. Reese, J. Ballot, Astronomy &#38; Astrophysics 704 (2025).
date_created: 2026-01-04T23:01:35Z
date_published: 2025-12-19T00:00:00Z
date_updated: 2026-02-16T12:14:36Z
day: '19'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.1051/0004-6361/202557247
ec_funded: 1
external_id:
  arxiv:
  - '2511.09617'
file:
- access_level: open_access
  checksum: d838b4783920c43b7cc866e9cf08b383
  content_type: application/pdf
  creator: dernst
  date_created: 2026-01-05T08:36:28Z
  date_updated: 2026-01-05T08:36:28Z
  file_id: '20937'
  file_name: 2025_AstronomyAstrophysics_Mombarg.pdf
  file_size: 2620909
  relation: main_file
  success: 1
file_date_updated: 2026-01-05T08:36:28Z
has_accepted_license: '1'
intvolume: '       704'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
- _id: 914d8549-16d5-11f0-9cad-bbe6324c93a9
  grant_number: '101165631'
  name: 'Unveiling the mysteries of stellar dynamics: a pioneering journey in magnetoasteroseismology'
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
related_material:
  record:
  - id: '20936'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei
  pulsators? Implications for measurements of rotation and internal magnetic fields
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 704
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20932'
abstract:
- lang: eng
  text: Identifying Lyman continuum (LyC) leakers at intermediate redshifts is crucial
    for understanding the properties of cosmic reionizers because the opacity of the
    intergalactic medium (IGM) prevents the direct detection of LyC emission from
    sources during the Epoch of Reionization (EoR). In this study, we confirm two
    new LyC candidate leakers at z ∼ 3 in the Abell 2744 cluster field, with absolute
    escape fractions (fesc) of 0.83−0.80+0.15 and 0.74−0.70+0.23, respectively. The
    LyC emission was detected using HST/WFC3/F275W and F336W imaging. These two candidate
    leakers appear to be faint (MUV = −17.61 ± 0.06 and −18.22 ± 0.10), exhibit blue
    UV continuum slopes (β = −2.43 ± 0.05 and −1.92 ± 0.09), have low masses (M★ ∼ 107.51 ± 0.03
    and 107.17 ± 0.15 M⊙) and Lyα equivalent widths of 90 ± 3 Å and 28 ± 12 Å, respectively.
    These two LyC candidate leakers were detected in a catalog of 91 spectroscopically
    confirmed sources using public spectra from the JWST and/or MUSE. We also analyzed
    properties that were proposed as indirect indicators of LyC emission, such as
    Lyα, the O32 ratio, and M★. We created a galaxy subsample that was selected according
    to these properties, stacked the LyC observations of this subsample, and assessed
    the limits of the escape fractions in the stacks. We aim to enhance our understanding
    of LyC escape mechanisms and improve our predictions of the LyC fesc during the
    EoR by analyzing the individual candidates and the stacks in the context of the
    currently limited sample of known LyC leakers at z ∼ 3.
acknowledgement: 'We acknowledge support from the National Science Foundation of China
  – 12225301, INAF Large grant “Spectroscopic survey with JWST” jand from PRIN 2022
  MUR project 2022CB3PJ3 – First Light And Galaxy aSsembly (FLAGS) funded by the European
  Union – Next Generation EU, and Postgraduate Scholarship Program under the grant
  of China Scholarship Council. P.W. and B.V. acknowledge support from the INAF Mini
  Grant ‘1.05.24.07.01 RSN1: Spatially Resolved Near-IR Emission of Intermediate-Redshift
  Jellyfish Galaxies’ (PI Watson). We acknowledge A. Acebron, C. Grillo, and P. Rosati
  for their fundamental contribution to the strong lensing analysis and results. We
  also extend our gratitude to the JWST and HST teams for their efforts in designing,
  building, and operating these transformative missions.'
article_number: A328
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Y.
  full_name: Liu, Y.
  last_name: Liu
- first_name: Sara
  full_name: Mascia, Sara
  id: edaf889c-c7cd-11ef-ab1b-bb28c431bd29
  last_name: Mascia
- first_name: L.
  full_name: Pentericci, L.
  last_name: Pentericci
- first_name: P.
  full_name: Watson, P.
  last_name: Watson
- first_name: A.
  full_name: Alavi, A.
  last_name: Alavi
- first_name: P.
  full_name: Bergamini, P.
  last_name: Bergamini
- first_name: M.
  full_name: Bradač, M.
  last_name: Bradač
- first_name: A.
  full_name: Calabrò, A.
  last_name: Calabrò
- first_name: K.
  full_name: Glazebrook, K.
  last_name: Glazebrook
- first_name: A.
  full_name: Henry, A.
  last_name: Henry
- first_name: M.
  full_name: Llerena, M.
  last_name: Llerena
- first_name: E.
  full_name: Merlin, E.
  last_name: Merlin
- first_name: B.
  full_name: Metha, B.
  last_name: Metha
- first_name: T.
  full_name: Nanayakkara, T.
  last_name: Nanayakkara
- first_name: L.
  full_name: Napolitano, L.
  last_name: Napolitano
- first_name: N.
  full_name: Roy, N.
  last_name: Roy
- first_name: B.
  full_name: Siana, B.
  last_name: Siana
- first_name: E.
  full_name: Vanzella, E.
  last_name: Vanzella
- first_name: B.
  full_name: Vulcani, B.
  last_name: Vulcani
- first_name: X.
  full_name: Wang, X.
  last_name: Wang
citation:
  ama: Liu Y, Mascia S, Pentericci L, et al. A Lyman continuum analysis of ∼100 galaxies
    at z spec∼ 3 in the Abell 2744 cluster field. <i>Astronomy &#38; Astrophysics</i>.
    2025;704. doi:<a href="https://doi.org/10.1051/0004-6361/202556410">10.1051/0004-6361/202556410</a>
  apa: Liu, Y., Mascia, S., Pentericci, L., Watson, P., Alavi, A., Bergamini, P.,
    … Wang, X. (2025). A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in
    the Abell 2744 cluster field. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences.
    <a href="https://doi.org/10.1051/0004-6361/202556410">https://doi.org/10.1051/0004-6361/202556410</a>
  chicago: Liu, Y., Sara Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini,
    M. Bradač, et al. “A Lyman Continuum Analysis of ∼100 Galaxies at z Spec∼ 3 in
    the Abell 2744 Cluster Field.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences,
    2025. <a href="https://doi.org/10.1051/0004-6361/202556410">https://doi.org/10.1051/0004-6361/202556410</a>.
  ieee: Y. Liu <i>et al.</i>, “A Lyman continuum analysis of ∼100 galaxies at z spec∼
    3 in the Abell 2744 cluster field,” <i>Astronomy &#38; Astrophysics</i>, vol.
    704. EDP Sciences, 2025.
  ista: Liu Y, Mascia S, Pentericci L, Watson P, Alavi A, Bergamini P, Bradač M, Calabrò
    A, Glazebrook K, Henry A, Llerena M, Merlin E, Metha B, Nanayakkara T, Napolitano
    L, Roy N, Siana B, Vanzella E, Vulcani B, Wang X. 2025. A Lyman continuum analysis
    of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field. Astronomy &#38;
    Astrophysics. 704, A328.
  mla: Liu, Y., et al. “A Lyman Continuum Analysis of ∼100 Galaxies at z Spec∼ 3 in
    the Abell 2744 Cluster Field.” <i>Astronomy &#38; Astrophysics</i>, vol. 704,
    A328, EDP Sciences, 2025, doi:<a href="https://doi.org/10.1051/0004-6361/202556410">10.1051/0004-6361/202556410</a>.
  short: Y. Liu, S. Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini, M. Bradač,
    A. Calabrò, K. Glazebrook, A. Henry, M. Llerena, E. Merlin, B. Metha, T. Nanayakkara,
    L. Napolitano, N. Roy, B. Siana, E. Vanzella, B. Vulcani, X. Wang, Astronomy &#38;
    Astrophysics 704 (2025).
date_created: 2026-01-04T23:01:35Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2026-02-16T12:14:52Z
day: '01'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.1051/0004-6361/202556410
external_id:
  arxiv:
  - '2507.11045'
file:
- access_level: open_access
  checksum: 3e6061f3c4bfb521b3333ea4913c241a
  content_type: application/pdf
  creator: dernst
  date_created: 2026-01-05T09:26:17Z
  date_updated: 2026-01-05T09:26:17Z
  file_id: '20938'
  file_name: 2025_AstronomyAstrophysics_Liu.pdf
  file_size: 4642530
  relation: main_file
  success: 1
file_date_updated: 2026-01-05T09:26:17Z
has_accepted_license: '1'
intvolume: '       704'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744
  cluster field
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 704
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20933'
abstract:
- lang: eng
  text: Photo-responsive systems based on azobenzenes usually require UV light for
    E→Z isomerization, limiting their applicability, especially in biomedical contexts.
    Disequilibration by sensitization of azobenzene under confinement (DESC) has recently
    emerged as a supramolecular strategy to bypass this limitation without the need
    to derivatize the azobenzene scaffold. Here, we expand DESC to water-soluble azopolymers
    obtained by RAFT polymerization and systematically investigate the interplay between
    the polymer structure and DESC efficiency. Using this approach, we achieved as
    much as 85% of the direct photoexcitation (UV) switching efficiency, while utilizing
    low-energy (yellow) light. These results establish general design principles for
    combining DESC with polymeric systems, opening new opportunities for the development
    of functional materials driven with low-energy light.
acknowledgement: "This work is supported by the European Research Council (Consolidator
  Grand project MULTIMODAL, no. 101045223), the Research Council of Finland Center
  of Excellence “Life-Inspired Hybrid Materials Research” (LIBER, no. 346107) and
  the Research Council of Finland Flagship Programme on Photonics Research and Innovation
  (PREIN, no. 320165). H.M. gratefully acknowledges Oommen Podivan for providing access
  to their Zetasizer for DLS measurements and the Faculty of Medicine and Health Technologies
  at Tampere University for access to their laboratory facilities. R.K. acknowledges
  funding through the Award for Research Cooperation and High Excellence in Science
  (ARCHES) from the Federal German Ministry for Education and Research. S.H. acknowledges
  financial support through the profi7 profiling action SUSBIO from the Research Council
  of Finland (no. 352754).\r\nOpen access publishing facilitated by Tampereen yliopisto
  ja Tampereen ammattikorkeakoulu, as part of the Wiley - FinELib agreement."
article_number: e23447
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Henning Jörn
  full_name: Meteling, Henning Jörn
  last_name: Meteling
- first_name: Julius
  full_name: Gemen, Julius
  last_name: Gemen
- first_name: Satu
  full_name: Häkkinen, Satu
  last_name: Häkkinen
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Arri
  full_name: Priimagi, Arri
  last_name: Priimagi
citation:
  ama: Meteling HJ, Gemen J, Häkkinen S, Klajn R, Priimagi A. Sensitized disequilibration
    of water-soluble azopolymers. <i>Angewandte Chemie International Edition</i>.
    2025. doi:<a href="https://doi.org/10.1002/anie.202523447">10.1002/anie.202523447</a>
  apa: Meteling, H. J., Gemen, J., Häkkinen, S., Klajn, R., &#38; Priimagi, A. (2025).
    Sensitized disequilibration of water-soluble azopolymers. <i>Angewandte Chemie
    International Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.202523447">https://doi.org/10.1002/anie.202523447</a>
  chicago: Meteling, Henning Jörn, Julius Gemen, Satu Häkkinen, Rafal Klajn, and Arri
    Priimagi. “Sensitized Disequilibration of Water-Soluble Azopolymers.” <i>Angewandte
    Chemie International Edition</i>. Wiley, 2025. <a href="https://doi.org/10.1002/anie.202523447">https://doi.org/10.1002/anie.202523447</a>.
  ieee: H. J. Meteling, J. Gemen, S. Häkkinen, R. Klajn, and A. Priimagi, “Sensitized
    disequilibration of water-soluble azopolymers,” <i>Angewandte Chemie International
    Edition</i>. Wiley, 2025.
  ista: Meteling HJ, Gemen J, Häkkinen S, Klajn R, Priimagi A. 2025. Sensitized disequilibration
    of water-soluble azopolymers. Angewandte Chemie International Edition., e23447.
  mla: Meteling, Henning Jörn, et al. “Sensitized Disequilibration of Water-Soluble
    Azopolymers.” <i>Angewandte Chemie International Edition</i>, e23447, Wiley, 2025,
    doi:<a href="https://doi.org/10.1002/anie.202523447">10.1002/anie.202523447</a>.
  short: H.J. Meteling, J. Gemen, S. Häkkinen, R. Klajn, A. Priimagi, Angewandte Chemie
    International Edition (2025).
date_created: 2026-01-04T23:01:35Z
date_published: 2025-12-23T00:00:00Z
date_updated: 2026-01-05T09:42:56Z
day: '23'
ddc:
- '540'
department:
- _id: RaKl
doi: 10.1002/anie.202523447
external_id:
  pmid:
  - '41437660'
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/anie.202523447
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 7bf494dc-9f16-11ee-852c-9fe37e3f50f0
  grant_number: '713490'
  name: 'Integrating Molecular Photoswitches with PH-Feedback Mechanisms: Towards
    Life-like Materials'
publication: Angewandte Chemie International Edition
publication_identifier:
  eissn:
  - 1521-3773
  issn:
  - 1433-7851
publication_status: epub_ahead
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sensitized disequilibration of water-soluble azopolymers
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20934'
abstract:
- lang: eng
  text: ' Supervised learning for causal discovery from observational data often achieves
    competitive performance despite seemingly avoiding the explicit assumptions that
    traditional methods require for identifiability. In this work, we analyze CSIvA
    (Ke et al., 2023) on bivariate causal models, a transformer architecture for amortized
    inference promising to train on synthetic data and transfer to real ones. First,
    we bridge the gap with identifiability theory, showing that the training distribution
    implicitly defines a prior on the causal model of the test observations: consistent
    with classical approaches, good performance is achieved when we have a good prior
    on the test data, and the underlying model is identifiable. Second, we find that
    CSIvA can not generalize to classes of causal models unseen during training: to
    overcome this limitation, we theoretically and empirically analyze \textit{when}
    training CSIvA on datasets generated by multiple identifiable causal models with
    different structural assumptions improves its generalization at test time. Overall,
    we find that amortized causal discovery still adheres to identifiability theory,
    violating the previous hypothesis from Lopez-Paz et al. (2015) that supervised
    learning methods could overcome its restrictions.'
alternative_title:
- TMLR
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Francesco
  full_name: Montagna, Francesco
  id: 353afc8e-19f4-11f0-9db9-811f1723c83f
  last_name: Montagna
- first_name: Maximilian T
  full_name: Cairney-Leeming, Maximilian T
  id: 2214a80c-31f8-11ee-a48d-cf52cc58759b
  last_name: Cairney-Leeming
- first_name: Dhanya
  full_name: Sridhar, Dhanya
  last_name: Sridhar
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
citation:
  ama: Montagna F, Cairney-Leeming MT, Sridhar D, Locatello F. Demystifying amortized
    causal discovery with transformers. <i>Transactions on Machine Learning Research</i>.
    2025.
  apa: Montagna, F., Cairney-Leeming, M. T., Sridhar, D., &#38; Locatello, F. (2025).
    Demystifying amortized causal discovery with transformers. <i>Transactions on
    Machine Learning Research</i>. ML Research Press.
  chicago: Montagna, Francesco, Maximilian T Cairney-Leeming, Dhanya Sridhar, and
    Francesco Locatello. “Demystifying Amortized Causal Discovery with Transformers.”
    <i>Transactions on Machine Learning Research</i>. ML Research Press, 2025.
  ieee: F. Montagna, M. T. Cairney-Leeming, D. Sridhar, and F. Locatello, “Demystifying
    amortized causal discovery with transformers,” <i>Transactions on Machine Learning
    Research</i>. ML Research Press, 2025.
  ista: Montagna F, Cairney-Leeming MT, Sridhar D, Locatello F. 2025. Demystifying
    amortized causal discovery with transformers. Transactions on Machine Learning
    Research.
  mla: Montagna, Francesco, et al. “Demystifying Amortized Causal Discovery with Transformers.”
    <i>Transactions on Machine Learning Research</i>, ML Research Press, 2025.
  short: F. Montagna, M.T. Cairney-Leeming, D. Sridhar, F. Locatello, Transactions
    on Machine Learning Research (2025).
corr_author: '1'
date_created: 2026-01-04T23:01:35Z
date_published: 2025-12-18T00:00:00Z
date_updated: 2026-01-05T09:54:59Z
day: '18'
ddc:
- '000'
department:
- _id: FrLo
external_id:
  arxiv:
  - '2405.16924'
file:
- access_level: open_access
  checksum: 968c471bb1f682cf823b2d4cadea8a3f
  content_type: application/pdf
  creator: dernst
  date_created: 2026-01-05T09:51:28Z
  date_updated: 2026-01-05T09:51:28Z
  file_id: '20939'
  file_name: 2025_PMLR_Montagna.pdf
  file_size: 1030280
  relation: main_file
  success: 1
file_date_updated: 2026-01-05T09:51:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Transactions on Machine Learning Research
publication_identifier:
  eissn:
  - 2835-8856
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/francescomontagna/learning-to-induce.git
scopus_import: '1'
status: public
title: Demystifying amortized causal discovery with transformers
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20935'
abstract:
- lang: eng
  text: In situ cryo-electron tomography (cryo-ET) has emerged as the method of choice
    to investigate the structures of biomolecules in their native context. However,
    challenges remain for the efficient production and sharing of large-scale cryo-ET
    datasets. Here, we combined cryogenic plasma-based focused ion beam (cryo-PFIB)
    milling with recent advances in cryo-ET acquisition and processing to generate
    a dataset of 1,829 annotated tomograms of the green alga Chlamydomonas reinhardtii,
    which we provide as a community resource to drive method development and inspire
    biological discovery. To assay data quality, we performed subtomogram averaging
    of both soluble and membrane-bound complexes ranging in size from >3 MDa to ∼200
    kDa, including 80S ribosomes, Rubisco, nucleosomes, microtubules, clathrin, photosystem
    II, and mitochondrial ATP synthase. The majority of these density maps reached
    sub-nanometer resolution, demonstrating the potential of this C. reinhardtii dataset
    as well as the promise of modern cryo-ET workflows and open data sharing to empower
    visual proteomics.
acknowledgement: Calculations were performed at the Max Planck Institute of Biochemistry
  and the Raven Supercomputer of the Max Planck Computing and Data Facility (MPCDF)
  in Garching, Germany; at the sciCORE (http://scicore.unibas.ch/) scientific computing
  center at the University of Basel, Switzerland; and at Thermo Fisher Scientific,
  in Eindhoven, the Netherlands. This work was supported by Thermo Fisher Scientific.
  All lamella preparations and tilt-series collections used in this work were conducted
  at Thermo Fisher R&D facilities in Brno and Eindhoven, utilizing Arctis and Krios
  microscopes. This work was also supported by the ERC consolidator grant “cryOcean”
  (fulfilled by the Swiss State Secretariat for Education, Research and Innovation,
  M822.00045) as well as a Swiss Nanoscience Institute PhD school grant to B.D.E.
  and P.V.d.S., an EMBO long-term postdoctoral fellowship (ALTF-383-2022) to G.T.,
  an SNSF Postdoctoral Fellowship (project 210561) to F.W., a Boehringer Ingelheim
  Fonds fellowship to L.L., and by the Max Planck Society to J.A.G.B. and J.M.P.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Ron
  full_name: Kelley, Ron
  last_name: Kelley
- first_name: Sagar
  full_name: Khavnekar, Sagar
  last_name: Khavnekar
- first_name: Ricardo D.
  full_name: Righetto, Ricardo D.
  last_name: Righetto
- first_name: Jessica
  full_name: Heebner, Jessica
  last_name: Heebner
- first_name: Martin
  full_name: Obr, Martin
  id: 4741CA5A-F248-11E8-B48F-1D18A9856A87
  last_name: Obr
  orcid: 0000-0003-1756-6564
- first_name: Xianjun
  full_name: Zhang, Xianjun
  last_name: Zhang
- first_name: Saikat
  full_name: Chakraborty, Saikat
  last_name: Chakraborty
- first_name: Grigory
  full_name: Tagiltsev, Grigory
  last_name: Tagiltsev
- first_name: Alicia
  full_name: Michael, Alicia
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
  orcid: 0000-0002-6080-839X
- first_name: Sofie
  full_name: Van Dorst, Sofie
  last_name: Van Dorst
- first_name: Florent
  full_name: Waltz, Florent
  last_name: Waltz
- first_name: Caitlyn L.
  full_name: Mccafferty, Caitlyn L.
  last_name: Mccafferty
- first_name: Lorenz
  full_name: Lamm, Lorenz
  last_name: Lamm
- first_name: Simon
  full_name: Zufferey, Simon
  last_name: Zufferey
- first_name: Philippe
  full_name: Van Der Stappen, Philippe
  last_name: Van Der Stappen
- first_name: Hugo
  full_name: Van Den Hoek, Hugo
  last_name: Van Den Hoek
- first_name: Wojciech
  full_name: Wietrzynski, Wojciech
  last_name: Wietrzynski
- first_name: Pavol
  full_name: Harar, Pavol
  id: e03d953a-6e8c-11ef-99e4-f0717d385cd5
  last_name: Harar
  orcid: 0000-0001-5206-1794
- first_name: William
  full_name: Wan, William
  last_name: Wan
- first_name: John A.G.
  full_name: Briggs, John A.G.
  last_name: Briggs
- first_name: Jürgen M.
  full_name: Plitzko, Jürgen M.
  last_name: Plitzko
- first_name: Benjamin D.
  full_name: Engel, Benjamin D.
  last_name: Engel
- first_name: Abhay
  full_name: Kotecha, Abhay
  last_name: Kotecha
citation:
  ama: Kelley R, Khavnekar S, Righetto RD, et al. Toward community-driven visual proteomics
    with large-scale cryo-electron tomography of Chlamydomonas reinhardtii. <i>Molecular
    Cell</i>. doi:<a href="https://doi.org/10.1016/j.molcel.2025.11.029">10.1016/j.molcel.2025.11.029</a>
  apa: Kelley, R., Khavnekar, S., Righetto, R. D., Heebner, J., Obr, M., Zhang, X.,
    … Kotecha, A. (n.d.). Toward community-driven visual proteomics with large-scale
    cryo-electron tomography of Chlamydomonas reinhardtii. <i>Molecular Cell</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.molcel.2025.11.029">https://doi.org/10.1016/j.molcel.2025.11.029</a>
  chicago: Kelley, Ron, Sagar Khavnekar, Ricardo D. Righetto, Jessica Heebner, Martin
    Obr, Xianjun Zhang, Saikat Chakraborty, et al. “Toward Community-Driven Visual
    Proteomics with Large-Scale Cryo-Electron Tomography of Chlamydomonas Reinhardtii.”
    <i>Molecular Cell</i>. Elsevier, n.d. <a href="https://doi.org/10.1016/j.molcel.2025.11.029">https://doi.org/10.1016/j.molcel.2025.11.029</a>.
  ieee: R. Kelley <i>et al.</i>, “Toward community-driven visual proteomics with large-scale
    cryo-electron tomography of Chlamydomonas reinhardtii,” <i>Molecular Cell</i>.
    Elsevier.
  ista: Kelley R, Khavnekar S, Righetto RD, Heebner J, Obr M, Zhang X, Chakraborty
    S, Tagiltsev G, Michael AK, Van Dorst S, Waltz F, Mccafferty CL, Lamm L, Zufferey
    S, Van Der Stappen P, Van Den Hoek H, Wietrzynski W, Harar P, Wan W, Briggs JAG,
    Plitzko JM, Engel BD, Kotecha A. Toward community-driven visual proteomics with
    large-scale cryo-electron tomography of Chlamydomonas reinhardtii. Molecular Cell.
  mla: Kelley, Ron, et al. “Toward Community-Driven Visual Proteomics with Large-Scale
    Cryo-Electron Tomography of Chlamydomonas Reinhardtii.” <i>Molecular Cell</i>,
    Elsevier, doi:<a href="https://doi.org/10.1016/j.molcel.2025.11.029">10.1016/j.molcel.2025.11.029</a>.
  short: R. Kelley, S. Khavnekar, R.D. Righetto, J. Heebner, M. Obr, X. Zhang, S.
    Chakraborty, G. Tagiltsev, A.K. Michael, S. Van Dorst, F. Waltz, C.L. Mccafferty,
    L. Lamm, S. Zufferey, P. Van Der Stappen, H. Van Den Hoek, W. Wietrzynski, P.
    Harar, W. Wan, J.A.G. Briggs, J.M. Plitzko, B.D. Engel, A. Kotecha, Molecular
    Cell (n.d.).
date_created: 2026-01-04T23:01:36Z
date_published: 2025-12-19T00:00:00Z
date_updated: 2026-01-05T08:32:47Z
day: '19'
ddc:
- '570'
department:
- _id: AlMi
doi: 10.1016/j.molcel.2025.11.029
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.molcel.2025.11.029
month: '12'
oa: 1
oa_version: Published Version
publication: Molecular Cell
publication_identifier:
  eissn:
  - 1097-4164
  issn:
  - 1097-2765
publication_status: inpress
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Toward community-driven visual proteomics with large-scale cryo-electron tomography
  of Chlamydomonas reinhardtii
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: repository
OA_type: gold
_id: '20936'
abstract:
- lang: eng
  text: "Supplementary material for Mombarg et al. (2025, A&A). Title: \"Is a 1D perturbative
    method sufficient for asteroseismic modelling of \r\n~Cephei pulsators? Implications
    for measurements of rotation and internal magnetic fields\"\r\n\r\nContent:\r\n-
    Non-rotating ESTER models and associated .GSM models. (Xini = 0.71, Zini = 0.014,
    vertical/horizonal viscosity 10^7 cm^2/s, vertical chemical diffusion 10^4 cm^2/s
    for evolution model. More details on the ESTER models can be found in the ESTER
    manual.\r\n\r\n- Rotational asymmetries computed with StORM and TOP in 1/d, and
    the central m=0 frequency from TOP in 1/d. (all_A*_new.pkl)\r\n\r\n- Magnetic
    asymmetries in 1/d for different obliquity angles between 0 and 90 deg for ZAMS
    and MAMS model, for B_0 = 75 kG. *_nu key gives unperturbed mode frequencies,
    *_npg the radial order (asym_dict.pkl, asym_dict_evol.pkl)"
article_processing_charge: No
author:
- first_name: Joey
  full_name: Mombarg, Joey
  last_name: Mombarg
- first_name: Vincent
  full_name: Vanlaer, Vincent
  last_name: Vanlaer
- first_name: Srijan B
  full_name: Das, Srijan B
  id: 9ce7c423-dacf-11ed-8942-e09c6cb27149
  last_name: Das
  orcid: 0000-0003-0896-7972
- first_name: Michel
  full_name: Rieutord, Michel
  last_name: Rieutord
- first_name: Conny
  full_name: Aerts, Conny
  last_name: Aerts
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
- first_name: Stephane
  full_name: Mathis, Stephane
  last_name: Mathis
- first_name: Daniel
  full_name: Reese, Daniel
  last_name: Reese
- first_name: Jerome
  full_name: Ballot, Jerome
  last_name: Ballot
citation:
  ama: Mombarg J, Vanlaer V, Das SB, et al. Is a 1D perturbative method sufficient
    for asteroseismic modelling of β Cephei pulsators? 2025. doi:<a href="https://doi.org/10.5281/ZENODO.17580178">10.5281/ZENODO.17580178</a>
  apa: Mombarg, J., Vanlaer, V., Das, S. B., Rieutord, M., Aerts, C., Bugnet, L. A.,
    … Ballot, J. (2025). Is a 1D perturbative method sufficient for asteroseismic
    modelling of β Cephei pulsators? Zenodo. <a href="https://doi.org/10.5281/ZENODO.17580178">https://doi.org/10.5281/ZENODO.17580178</a>
  chicago: Mombarg, Joey, Vincent Vanlaer, Srijan B Das, Michel Rieutord, Conny Aerts,
    Lisa Annabelle Bugnet, Stephane Mathis, Daniel Reese, and Jerome Ballot. “Is a
    1D Perturbative Method Sufficient for Asteroseismic Modelling of β Cephei Pulsators?”
    Zenodo, 2025. <a href="https://doi.org/10.5281/ZENODO.17580178">https://doi.org/10.5281/ZENODO.17580178</a>.
  ieee: J. Mombarg <i>et al.</i>, “Is a 1D perturbative method sufficient for asteroseismic
    modelling of β Cephei pulsators?” Zenodo, 2025.
  ista: Mombarg J, Vanlaer V, Das SB, Rieutord M, Aerts C, Bugnet LA, Mathis S, Reese
    D, Ballot J. 2025. Is a 1D perturbative method sufficient for asteroseismic modelling
    of β Cephei pulsators?, Zenodo, <a href="https://doi.org/10.5281/ZENODO.17580178">10.5281/ZENODO.17580178</a>.
  mla: Mombarg, Joey, et al. <i>Is a 1D Perturbative Method Sufficient for Asteroseismic
    Modelling of β Cephei Pulsators?</i> Zenodo, 2025, doi:<a href="https://doi.org/10.5281/ZENODO.17580178">10.5281/ZENODO.17580178</a>.
  short: J. Mombarg, V. Vanlaer, S.B. Das, M. Rieutord, C. Aerts, L.A. Bugnet, S.
    Mathis, D. Reese, J. Ballot, (2025).
date_created: 2026-01-05T08:39:33Z
date_published: 2025-11-11T00:00:00Z
date_updated: 2026-02-16T12:14:36Z
day: '11'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.5281/ZENODO.17580178
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.17580178
month: '11'
oa: 1
oa_version: Submitted Version
publisher: Zenodo
related_material:
  record:
  - id: '20931'
    relation: used_in_publication
    status: public
status: public
title: Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei
  pulsators?
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20940'
abstract:
- lang: eng
  text: These are the raw data files that supplement our study of mode dispersion
    with magnetic field of a cavity-magnonics system containing chromium trichloride
    on coplanar waveguide resonator.
article_processing_charge: No
author:
- first_name: Supriya
  full_name: Mandal, Supriya
  last_name: Mandal
- first_name: Krishnendu
  full_name: Maji, Krishnendu
  id: 76bc9e9f-ba0b-11ee-8184-90edabd17a58
  last_name: Maji
- first_name: Lucky
  full_name: Kapoor, Lucky
  id: 84b9700b-15b2-11ec-abd3-831089e67615
  last_name: Kapoor
  orcid: 0000-0001-8319-2148
- first_name: Souvik
  full_name: Sasmal, Souvik
  last_name: Sasmal
- first_name: Soham
  full_name: Manni, Soham
  last_name: Manni
- first_name: John
  full_name: Jesudasan, John
  last_name: Jesudasan
- first_name: Pratap
  full_name: Raychaudhuri, Pratap
  last_name: Raychaudhuri
- first_name: Arumugam
  full_name: Thamizhavel, Arumugam
  last_name: Thamizhavel
- first_name: Mandar M.
  full_name: Deshmukh, Mandar M.
  last_name: Deshmukh
citation:
  ama: Mandal S, Maji K, Kapoor L, et al. Mode dispersion with magnetic field in a
    cavity-magnonics system. 2025. doi:<a href="https://doi.org/10.5281/ZENODO.15321721">10.5281/ZENODO.15321721</a>
  apa: Mandal, S., Maji, K., Kapoor, L., Sasmal, S., Manni, S., Jesudasan, J., … Deshmukh,
    M. M. (2025). Mode dispersion with magnetic field in a cavity-magnonics system.
    Zenodo. <a href="https://doi.org/10.5281/ZENODO.15321721">https://doi.org/10.5281/ZENODO.15321721</a>
  chicago: Mandal, Supriya, Krishnendu Maji, Lucky Kapoor, Souvik Sasmal, Soham Manni,
    John Jesudasan, Pratap Raychaudhuri, Arumugam Thamizhavel, and Mandar M. Deshmukh.
    “Mode Dispersion with Magnetic Field in a Cavity-Magnonics System.” Zenodo, 2025.
    <a href="https://doi.org/10.5281/ZENODO.15321721">https://doi.org/10.5281/ZENODO.15321721</a>.
  ieee: S. Mandal <i>et al.</i>, “Mode dispersion with magnetic field in a cavity-magnonics
    system.” Zenodo, 2025.
  ista: Mandal S, Maji K, Kapoor L, Sasmal S, Manni S, Jesudasan J, Raychaudhuri P,
    Thamizhavel A, Deshmukh MM. 2025. Mode dispersion with magnetic field in a cavity-magnonics
    system, Zenodo, <a href="https://doi.org/10.5281/ZENODO.15321721">10.5281/ZENODO.15321721</a>.
  mla: Mandal, Supriya, et al. <i>Mode Dispersion with Magnetic Field in a Cavity-Magnonics
    System</i>. Zenodo, 2025, doi:<a href="https://doi.org/10.5281/ZENODO.15321721">10.5281/ZENODO.15321721</a>.
  short: S. Mandal, K. Maji, L. Kapoor, S. Sasmal, S. Manni, J. Jesudasan, P. Raychaudhuri,
    A. Thamizhavel, M.M. Deshmukh, (2025).
date_created: 2026-01-05T10:00:06Z
date_published: 2025-05-02T00:00:00Z
date_updated: 2026-01-05T10:07:04Z
day: '02'
department:
- _id: MaIb
- _id: JoFi
doi: 10.5281/ZENODO.15321721
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/ZENODO.15321721
month: '05'
oa: 1
oa_version: Submitted Version
publisher: Zenodo
related_material:
  record:
  - id: '20927'
    relation: used_in_publication
    status: public
status: public
title: Mode dispersion with magnetic field in a cavity-magnonics system
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_type: closed access
_id: '20973'
abstract:
- lang: eng
  text: CuAgSe-based materials are attractive for low-temperature thermoelectric (TE)
    applications but are limited by bipolar conduction and relatively high thermal
    conductivity. Herein, we report a ligand-free aqueous synthesis of Te-doped CuAgSe
    (CuAgSe1-xTex), where structural and electronic modulation improve carrier transport
    and suppress phonon propagation. Ex-situ time-resolved X-ray diffraction reveals
    a spontaneous growth mechanism, while density functional theory calculations show
    that Te-5s and 5p orbitals hybridization generates localized states and an asymmetric
    density of states, thereby enhancing the Seebeck coefficient. Electron microscopy
    and strain analyses confirm that Te-doping introduces a high density of lattice
    dislocations and grain boundaries, leading to a reduced lattice thermal conductivity
    of 0.11 W m−1K−1 at 443 K. These synergistic effects translate into device-level
    performance—the first integrated CuAgSe thermoelectric modules, exhibit a maximum
    cooling temperature difference of 27.3 K, and power density of 0.34 W cm−2 with
    a conversion efficiency of 3.6% at a modest temperature gradient of 136 K. These
    results demonstrate that CuAgSe1-xTex enables efficient energy harvesting and
    localized cooling under small temperature gradient, underscoring the importance
    of structural and electronic design beyond conventional zT benchmarks.
acknowledgement: K.H.L. acknowledges financial support from the National Natural Science
  Foundation of China (NSFC) (Grant Number 22208293) and the National Foreign Expert
  Project (Y20240175). Y.L. acknowledges funding from the NSFC (Grant Number 22209034),
  the Innovation and Entrepreneurship Project of Overseas Returnees in Anhui Province
  (Grant Number 2022LCX002), and the Fundamental Research Funds for the Central Universities
  (JZ2024HGTB0239). Y.Z. acknowledges funding from the NSFC (Grant Number 52502313)
  and Wenzhou Basic Scientific Research Project (Grant Number G20240034). Q. W. acknowledges
  financial support from the NSFC (Grant Number 22208292), the High-Level Overseas-Educated
  Talents Return Program, and the “Pioneer” and “Leading Goose” R&D Program of Zhejiang
  [2025C04021]. K.H.L., Q. W., and X. Y. also acknowledge the Research Funds of the
  Institute of Zhejiang University-Quzhou (Grants No. IZQ2022RCZX101, IZQ2021RCZX003,
  IZQ2021RCZX002, and IZQ2024KJ0004). M.H. acknowledges the funding from the Australian
  Research Council and the iLAuNCH Trailblazer, Department of Education, Australia.
  M.H. acknowledges the computational support from the National Computational Infrastructure
  (NCI), Australia, and Pawsey Supercomputing Centre, Australia.
article_number: e13035
article_processing_charge: No
article_type: original
author:
- first_name: Weite
  full_name: Meng, Weite
  last_name: Meng
- first_name: Mingquan
  full_name: Li, Mingquan
  last_name: Li
- first_name: Qingyue
  full_name: Wang, Qingyue
  last_name: Wang
- first_name: Pingan
  full_name: Song, Pingan
  last_name: Song
- first_name: Xuan
  full_name: Yang, Xuan
  last_name: Yang
- first_name: Wen Jun
  full_name: Wang, Wen Jun
  last_name: Wang
- first_name: Min
  full_name: Hong, Min
  last_name: Hong
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Yu
  full_name: Liu, Yu
  last_name: Liu
- first_name: Khak Ho
  full_name: Lim, Khak Ho
  last_name: Lim
citation:
  ama: Meng W, Li M, Wang Q, et al. Efficient near room temperature thermoelectric
    cooling and power generation with CuAgSe. <i>Small</i>. 2025. doi:<a href="https://doi.org/10.1002/smll.202513035">10.1002/smll.202513035</a>
  apa: Meng, W., Li, M., Wang, Q., Song, P., Yang, X., Wang, W. J., … Lim, K. H. (2025).
    Efficient near room temperature thermoelectric cooling and power generation with
    CuAgSe. <i>Small</i>. Wiley. <a href="https://doi.org/10.1002/smll.202513035">https://doi.org/10.1002/smll.202513035</a>
  chicago: Meng, Weite, Mingquan Li, Qingyue Wang, Pingan Song, Xuan Yang, Wen Jun
    Wang, Min Hong, et al. “Efficient near Room Temperature Thermoelectric Cooling
    and Power Generation with CuAgSe.” <i>Small</i>. Wiley, 2025. <a href="https://doi.org/10.1002/smll.202513035">https://doi.org/10.1002/smll.202513035</a>.
  ieee: W. Meng <i>et al.</i>, “Efficient near room temperature thermoelectric cooling
    and power generation with CuAgSe,” <i>Small</i>. Wiley, 2025.
  ista: Meng W, Li M, Wang Q, Song P, Yang X, Wang WJ, Hong M, Ibáñez M, Cabot A,
    Zhang Y, Liu Y, Lim KH. 2025. Efficient near room temperature thermoelectric cooling
    and power generation with CuAgSe. Small., e13035.
  mla: Meng, Weite, et al. “Efficient near Room Temperature Thermoelectric Cooling
    and Power Generation with CuAgSe.” <i>Small</i>, e13035, Wiley, 2025, doi:<a href="https://doi.org/10.1002/smll.202513035">10.1002/smll.202513035</a>.
  short: W. Meng, M. Li, Q. Wang, P. Song, X. Yang, W.J. Wang, M. Hong, M. Ibáñez,
    A. Cabot, Y. Zhang, Y. Liu, K.H. Lim, Small (2025).
date_created: 2026-01-11T23:01:34Z
date_published: 2025-12-30T00:00:00Z
date_updated: 2026-01-12T09:37:19Z
day: '30'
department:
- _id: MaIb
doi: 10.1002/smll.202513035
external_id:
  pmid:
  - '41470065'
language:
- iso: eng
month: '12'
oa_version: None
pmid: 1
publication: Small
publication_identifier:
  eissn:
  - 1613-6829
  issn:
  - 1613-6810
publication_status: epub_ahead
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient near room temperature thermoelectric cooling and power generation
  with CuAgSe
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
