---
OA_place: publisher
_id: '12809'
abstract:
- lang: eng
  text: "Understanding the mechanisms of learning and memory formation has always
    been one of\r\nthe main goals in neuroscience. Already Pavlov (1927) in his early
    days has used his classic\r\nconditioning experiments to study the neural mechanisms
    governing behavioral adaptation.\r\nWhat was not known back then was that the
    part of the brain that is largely responsible for\r\nthis type of associative
    learning is the cerebellum.\r\nSince then, plenty of theories on cerebellar learning
    have emerged. Despite their differences,\r\none thing they all have in common
    is that learning relies on synaptic and intrinsic plasticity.\r\nThe goal of my
    PhD project was to unravel the molecular mechanisms underlying synaptic\r\nplasticity
    in two synapses that have been shown to be implicated in motor learning, in an\r\neffort
    to understand how learning and memory formation are processed in the cerebellum.\r\nOne
    of the earliest and most well-known cerebellar theories postulates that motor
    learning\r\nlargely depends on long-term depression at the parallel fiber-Purkinje
    cell (PC-PC) synapse.\r\nHowever, the discovery of other types of plasticity in
    the cerebellar circuitry, like long-term\r\npotentiation (LTP) at the PC-PC synapse,
    potentiation of molecular layer interneurons (MLIs),\r\nand plasticity transfer
    from the cortex to the cerebellar/ vestibular nuclei has increased the\r\npopularity
    of the idea that multiple sites of plasticity might be involved in learning.\r\nStill
    a lot remains unknown about the molecular mechanisms responsible for these types
    of\r\nplasticity and whether they occur during physiological learning.\r\nIn the
    first part of this thesis we have analyzed the variation and nanodistribution
    of voltagegated calcium channels (VGCCs) and α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
    acid\r\ntype glutamate receptors (AMPARs) on the parallel fiber-Purkinje cell
    synapse after vestibuloocular reflex phase reversal adaptation, a behavior that
    has been suggested to rely on PF-PC\r\nLTP. We have found that on the last day
    of adaptation there is no learning trace in form of\r\nVGCCs nor AMPARs variation
    at the PF-PC synapse, but instead a decrease in the number of\r\nPF-PC synapses.
    These data seem to support the view that learning is only stored in the\r\ncerebellar
    cortex in an initial learning phase, being transferred later to the vestibular
    nuclei.\r\nNext, we have studied the role of MLIs in motor learning using a relatively
    simple and well characterized behavioral paradigm – horizontal optokinetic reflex
    (HOKR) adaptation. We\r\nhave found behavior-induced MLI potentiation in form
    of release probability increase that\r\ncould be explained by the increase of
    VGCCs at the presynaptic side. Our results strengthen\r\nthe idea of distributed
    cerebellar plasticity contributing to learning and provide a novel\r\nmechanism
    for release probability increase. "
acknowledged_ssus:
- _id: EM-Fac
- _id: Bio
- _id: PreCl
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Catarina
  full_name: Alcarva, Catarina
  id: 3A96634C-F248-11E8-B48F-1D18A9856A87
  last_name: Alcarva
citation:
  ama: 'Alcarva C. Plasticity in the cerebellum: What molecular mechanisms are behind
    physiological learning. 2023. doi:<a href="https://doi.org/10.15479/at:ista:12809">10.15479/at:ista:12809</a>'
  apa: 'Alcarva, C. (2023). <i>Plasticity in the cerebellum: What molecular mechanisms
    are behind physiological learning</i>. Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/at:ista:12809">https://doi.org/10.15479/at:ista:12809</a>'
  chicago: 'Alcarva, Catarina. “Plasticity in the Cerebellum: What Molecular Mechanisms
    Are behind Physiological Learning.” Institute of Science and Technology Austria,
    2023. <a href="https://doi.org/10.15479/at:ista:12809">https://doi.org/10.15479/at:ista:12809</a>.'
  ieee: 'C. Alcarva, “Plasticity in the cerebellum: What molecular mechanisms are
    behind physiological learning,” Institute of Science and Technology Austria, 2023.'
  ista: 'Alcarva C. 2023. Plasticity in the cerebellum: What molecular mechanisms
    are behind physiological learning. Institute of Science and Technology Austria.'
  mla: 'Alcarva, Catarina. <i>Plasticity in the Cerebellum: What Molecular Mechanisms
    Are behind Physiological Learning</i>. Institute of Science and Technology Austria,
    2023, doi:<a href="https://doi.org/10.15479/at:ista:12809">10.15479/at:ista:12809</a>.'
  short: 'C. Alcarva, Plasticity in the Cerebellum: What Molecular Mechanisms Are
    behind Physiological Learning, Institute of Science and Technology Austria, 2023.'
corr_author: '1'
date_created: 2023-04-06T07:54:09Z
date_published: 2023-04-06T00:00:00Z
date_updated: 2026-04-07T13:53:28Z
day: '06'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: RySh
doi: 10.15479/at:ista:12809
file:
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  date_updated: 2024-04-08T22:30:03Z
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  date_updated: 2024-04-08T22:30:03Z
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file_date_updated: 2024-04-08T22:30:03Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: '115'
project:
- _id: 267DFB90-B435-11E9-9278-68D0E5697425
  name: 'Plasticity in the cerebellum: Which molecular mechanisms are behind physiological
    learning?'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
title: 'Plasticity in the cerebellum: What molecular mechanisms are behind physiological
  learning'
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2023'
...
---
_id: '12212'
abstract:
- lang: eng
  text: Alzheimer’s disease (AD) is characterized by a reorganization of brain activity
    determining network hyperexcitability and loss of synaptic plasticity. Precisely,
    a dysfunction in metabotropic GABAB receptor signalling through G protein-gated
    inwardly rectifying K+ (GIRK or Kir3) channels on the hippocampus has been postulated.
    Thus, we determined the impact of amyloid-β (Aβ) pathology in GIRK channel density,
    subcellular distribution, and its association with GABAB receptors in hippocampal
    CA1 pyramidal neurons from the APP/PS1 mouse model using quantitative SDS-digested
    freeze-fracture replica labelling (SDS-FRL) and proximity ligation in situ assay
    (P-LISA). In wild type mice, single SDS-FRL detection revealed a similar dendritic
    gradient for GIRK1 and GIRK2 in CA1 pyramidal cells, with higher densities in
    spines, and GIRK3 showed a lower and uniform distribution. Double SDS-FRL showed
    a co-clustering of GIRK2 and GIRK1 in post- and presynaptic compartments, but
    not for GIRK2 and GIRK3. Likewise, double GABAB1 and GIRK2 SDS-FRL detection displayed
    a high degree of co-clustering in nanodomains (40–50 nm) mostly in spines and
    axon terminals. In APP/PS1 mice, the density of GIRK2 and GIRK1, but not for GIRK3,
    was significantly reduced along the neuronal surface of CA1 pyramidal cells and
    in axon terminals contacting them. Importantly, GABAB1 and GIRK2 co-clustering
    was not present in APP/PS1 mice. Similarly, P-LISA experiments revealed a significant
    reduction in GABAB1 and GIRK2 interaction on the hippocampus of this animal model.
    Overall, our results provide compelling evidence showing a significant reduction
    on the cell surface density of pre- and postsynaptic GIRK1 and GIRK2, but not
    GIRK3, and a decline in GABAB receptors and GIRK2 channels co-clustering in hippocampal
    pyramidal neurons from APP/PS1 mice, thus suggesting that a disruption in the
    GABAB receptor–GIRK channel membrane assembly causes dysregulation in the GABAB
    signalling via GIRK channels in this AD animal model.
acknowledgement: "We thank Ms. Diane Latawiec for the English revision of the manuscript.
  Funding sources were the Spanish Ministerio de Economía y Competitividad, Junta
  de Comunidades de Castilla-La Mancha (Spain), and Life Science Innovation Center
  at University of Fukui. We thank Centres de Recerca de Catalunya (CERCA) Programme/Generalitat
  de Catalunya for IDIBELL institutional support. We thank Hitoshi Takagi and Takako
  Maegawa at the University of Fukui for their technical assistance on SDS-FRL experiments.\r\nThis
  work was supported by grants from the Spanish Ministerio de Economía y Competitividad
  (BFU2015-63769-R, RTI2018-095812-B-I00, and PID2021-125875OB-I00) and Junta de Comunidades
  de Castilla-La Mancha (SBPLY/17/180501/000229 and SBPLY/21/180501/000064) to RL,
  Life Science Innovation Center at University of Fukui and JSPS KAKENHI (Grant Numbers
  16H04662, 19H03323, and 20H05058) to YF, and Margarita Salas fellowship from Ministerio
  de Universidades and Universidad de Castilla-La Mancha to AMB."
article_number: '136'
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruiz, Rocío
  last_name: Alfaro-Ruiz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: de la Ossa, Luis
  last_name: de la Ossa
- first_name: Ester
  full_name: Aso, Ester
  last_name: Aso
- first_name: Laura
  full_name: Gómez-Acero, Laura
  last_name: Gómez-Acero
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Francisco
  full_name: Ciruela, Francisco
  last_name: Ciruela
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruiz R, et al. Nanoscale alterations in
    GABAB receptors and GIRK channel organization on the hippocampus of APP/PS1 mice.
    <i>Alzheimer’s Research &#38; Therapy</i>. 2022;14. doi:<a href="https://doi.org/10.1186/s13195-022-01078-5">10.1186/s13195-022-01078-5</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruiz, R., Moreno-Martínez, A. E., de
    la Ossa, L., Aso, E., … Luján, R. (2022). Nanoscale alterations in GABAB receptors
    and GIRK channel organization on the hippocampus of APP/PS1 mice. <i>Alzheimer’s
    Research &#38; Therapy</i>. Springer Nature. <a href="https://doi.org/10.1186/s13195-022-01078-5">https://doi.org/10.1186/s13195-022-01078-5</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruiz, Ana Esther
    Moreno-Martínez, Luis de la Ossa, Ester Aso, Laura Gómez-Acero, et al. “Nanoscale
    Alterations in GABAB Receptors and GIRK Channel Organization on the Hippocampus
    of APP/PS1 Mice.” <i>Alzheimer’s Research &#38; Therapy</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1186/s13195-022-01078-5">https://doi.org/10.1186/s13195-022-01078-5</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Nanoscale alterations in GABAB receptors
    and GIRK channel organization on the hippocampus of APP/PS1 mice,” <i>Alzheimer’s
    Research &#38; Therapy</i>, vol. 14. Springer Nature, 2022.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruiz R, Moreno-Martínez AE, de la Ossa
    L, Aso E, Gómez-Acero L, Shigemoto R, Fukazawa Y, Ciruela F, Luján R. 2022. Nanoscale
    alterations in GABAB receptors and GIRK channel organization on the hippocampus
    of APP/PS1 mice. Alzheimer’s Research &#38; Therapy. 14, 136.
  mla: Martín-Belmonte, Alejandro, et al. “Nanoscale Alterations in GABAB Receptors
    and GIRK Channel Organization on the Hippocampus of APP/PS1 Mice.” <i>Alzheimer’s
    Research &#38; Therapy</i>, vol. 14, 136, Springer Nature, 2022, doi:<a href="https://doi.org/10.1186/s13195-022-01078-5">10.1186/s13195-022-01078-5</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruiz, A.E. Moreno-Martínez, L. de
    la Ossa, E. Aso, L. Gómez-Acero, R. Shigemoto, Y. Fukazawa, F. Ciruela, R. Luján,
    Alzheimer’s Research &#38; Therapy 14 (2022).
date_created: 2023-01-16T09:45:51Z
date_published: 2022-09-21T00:00:00Z
date_updated: 2025-06-11T13:40:00Z
day: '21'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1186/s13195-022-01078-5
external_id:
  isi:
  - '000857985500001'
  pmid:
  - '36131327'
file:
- access_level: open_access
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  creator: dernst
  date_created: 2023-01-27T07:53:18Z
  date_updated: 2023-01-27T07:53:18Z
  file_id: '12413'
  file_name: 2022_AlzheimersResearch_MartinBelmont.pdf
  file_size: 11013325
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T07:53:18Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
keyword:
- Cognitive Neuroscience
- Neurology (clinical)
- Neurology
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: Alzheimer's Research & Therapy
publication_identifier:
  issn:
  - 1758-9193
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nanoscale alterations in GABAB receptors and GIRK channel organization on the
  hippocampus of APP/PS1 mice
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2022'
...
---
_id: '11419'
abstract:
- lang: eng
  text: Elevation of soluble wild-type (WT) tau occurs in synaptic compartments in
    Alzheimer’s disease. We addressed whether tau elevation affects synaptic transmission
    at the calyx of Held in slices from mice brainstem. Whole-cell loading of WT human
    tau (h-tau) in presynaptic terminals at 10–20 µM caused microtubule (MT) assembly
    and activity-dependent rundown of excitatory neurotransmission. Capacitance measurements
    revealed that the primary target of WT h-tau is vesicle endocytosis. Blocking
    MT assembly using nocodazole prevented tau-induced impairments of endocytosis
    and neurotransmission. Immunofluorescence imaging analyses revealed that MT assembly
    by WT h-tau loading was associated with an increased MT-bound fraction of the
    endocytic protein dynamin. A synthetic dodecapeptide corresponding to dynamin
    1-pleckstrin-homology domain inhibited MT-dynamin interaction and rescued tau-induced
    impairments of endocytosis and neurotransmission. We conclude that elevation of
    presynaptic WT tau induces de novo assembly of MTs, thereby sequestering free
    dynamins. As a result, endocytosis and subsequent vesicle replenishment are impaired,
    causing activity-dependent rundown of neurotransmission.
acknowledgement: We thank Yasuo Ihara, Nobuyuki Nukina, and Takeshi Sakaba for comments
  and Patrick Stoney for editing this paper. We also thank Shota Okuda and Mikako
  Matsubara for their contributions in the early stage of this study, and Satoko Wada-Kakuda
  for technical assistant with in vitro analysis of tau. This research was supported
  by funding from Okinawa Institute of Science and Technology and from Technology
  (OIST) and Core Research for the Evolutional Science and Technology of Japan Science
  and Technology Agency (CREST) to TT, and by Scientific Research on Innovative Areas
  to TM (Brain Protein Aging and Dementia Control 26117004).
article_number: e73542
article_processing_charge: No
article_type: original
author:
- first_name: Tetsuya
  full_name: Hori, Tetsuya
  last_name: Hori
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Han Ying
  full_name: Wang, Han Ying
  last_name: Wang
- first_name: Tomohiro
  full_name: Miyasaka, Tomohiro
  last_name: Miyasaka
- first_name: Laurent
  full_name: Guillaud, Laurent
  last_name: Guillaud
- first_name: Zacharie
  full_name: Taoufiq, Zacharie
  last_name: Taoufiq
- first_name: Satyajit
  full_name: Mahapatra, Satyajit
  last_name: Mahapatra
- first_name: Hiroshi
  full_name: Yamada, Hiroshi
  last_name: Yamada
- first_name: Kohji
  full_name: Takei, Kohji
  last_name: Takei
- first_name: Tomoyuki
  full_name: Takahashi, Tomoyuki
  last_name: Takahashi
citation:
  ama: Hori T, Eguchi K, Wang HY, et al. Microtubule assembly by tau impairs endocytosis
    and neurotransmission via dynamin sequestration in Alzheimer’s disease synapse
    model. <i>eLife</i>. 2022;11. doi:<a href="https://doi.org/10.7554/eLife.73542">10.7554/eLife.73542</a>
  apa: Hori, T., Eguchi, K., Wang, H. Y., Miyasaka, T., Guillaud, L., Taoufiq, Z.,
    … Takahashi, T. (2022). Microtubule assembly by tau impairs endocytosis and neurotransmission
    via dynamin sequestration in Alzheimer’s disease synapse model. <i>ELife</i>.
    eLife Sciences Publications. <a href="https://doi.org/10.7554/eLife.73542">https://doi.org/10.7554/eLife.73542</a>
  chicago: Hori, Tetsuya, Kohgaku Eguchi, Han Ying Wang, Tomohiro Miyasaka, Laurent
    Guillaud, Zacharie Taoufiq, Satyajit Mahapatra, Hiroshi Yamada, Kohji Takei, and
    Tomoyuki Takahashi. “Microtubule Assembly by Tau Impairs Endocytosis and Neurotransmission
    via Dynamin Sequestration in Alzheimer’s Disease Synapse Model.” <i>ELife</i>.
    eLife Sciences Publications, 2022. <a href="https://doi.org/10.7554/eLife.73542">https://doi.org/10.7554/eLife.73542</a>.
  ieee: T. Hori <i>et al.</i>, “Microtubule assembly by tau impairs endocytosis and
    neurotransmission via dynamin sequestration in Alzheimer’s disease synapse model,”
    <i>eLife</i>, vol. 11. eLife Sciences Publications, 2022.
  ista: Hori T, Eguchi K, Wang HY, Miyasaka T, Guillaud L, Taoufiq Z, Mahapatra S,
    Yamada H, Takei K, Takahashi T. 2022. Microtubule assembly by tau impairs endocytosis
    and neurotransmission via dynamin sequestration in Alzheimer’s disease synapse
    model. eLife. 11, e73542.
  mla: Hori, Tetsuya, et al. “Microtubule Assembly by Tau Impairs Endocytosis and
    Neurotransmission via Dynamin Sequestration in Alzheimer’s Disease Synapse Model.”
    <i>ELife</i>, vol. 11, e73542, eLife Sciences Publications, 2022, doi:<a href="https://doi.org/10.7554/eLife.73542">10.7554/eLife.73542</a>.
  short: T. Hori, K. Eguchi, H.Y. Wang, T. Miyasaka, L. Guillaud, Z. Taoufiq, S. Mahapatra,
    H. Yamada, K. Takei, T. Takahashi, ELife 11 (2022).
date_created: 2022-05-29T22:01:54Z
date_published: 2022-05-05T00:00:00Z
date_updated: 2023-08-03T07:15:49Z
day: '05'
ddc:
- '616'
department:
- _id: RySh
doi: 10.7554/eLife.73542
external_id:
  isi:
  - '000876231600001'
  pmid:
  - '35471147 '
file:
- access_level: open_access
  checksum: ccddbd167e00ff8375f12998af497152
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-05-30T08:09:16Z
  date_updated: 2022-05-30T08:09:16Z
  file_id: '11421'
  file_name: elife-73542-v2.pdf
  file_size: 2466296
  relation: main_file
  success: 1
file_date_updated: 2022-05-30T08:09:16Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microtubule assembly by tau impairs endocytosis and neurotransmission via dynamin
  sequestration in Alzheimer's disease synapse model
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2022'
...
---
_id: '10890'
abstract:
- lang: eng
  text: Upon the arrival of action potentials at nerve terminals, neurotransmitters
    are released from synaptic vesicles (SVs) by exocytosis. CaV2.1, 2.2, and 2.3
    are the major subunits of the voltage-gated calcium channel (VGCC) responsible
    for increasing intraterminal calcium levels and triggering SV exocytosis in the
    central nervous system (CNS) synapses. The two-dimensional analysis of CaV2 distributions
    using sodium dodecyl sulfate (SDS)-digested freeze-fracture replica labeling (SDS-FRL)
    has revealed their numbers, densities, and nanoscale clustering patterns in individual
    presynaptic active zones. The variation in these properties affects the coupling
    of VGCCs with calcium sensors on SVs, synaptic efficacy, and temporal precision
    of transmission. In this study, we summarize how the morphological parameters
    of CaV2 distribution obtained using SDS-FRL differ depending on the different
    types of synapses and could correspond to functional properties in synaptic transmission.
acknowledgement: "This work was supported by the European Research Council advanced
  grant No. 694539 and the joint German-Austrian DFG and FWF project SYNABS (FWF:
  I-4638-B) to RS.\r\nThe authors thank Walter Kaufmann for his critical comments
  on the manuscript."
article_number: '846615'
article_processing_charge: No
article_type: original
author:
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Jacqueline-Claire
  full_name: Montanaro-Punzengruber, Jacqueline-Claire
  id: 3786AB44-F248-11E8-B48F-1D18A9856A87
  last_name: Montanaro-Punzengruber
- first_name: Elodie
  full_name: Le Monnier, Elodie
  id: 3B59276A-F248-11E8-B48F-1D18A9856A87
  last_name: Le Monnier
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Eguchi K, Montanaro-Punzengruber J-C, Le Monnier E, Shigemoto R. The number
    and distinct clustering patterns of voltage-gated Calcium channels in nerve terminals.
    <i>Frontiers in Neuroanatomy</i>. 2022;16. doi:<a href="https://doi.org/10.3389/fnana.2022.846615">10.3389/fnana.2022.846615</a>
  apa: Eguchi, K., Montanaro-Punzengruber, J.-C., Le Monnier, E., &#38; Shigemoto,
    R. (2022). The number and distinct clustering patterns of voltage-gated Calcium
    channels in nerve terminals. <i>Frontiers in Neuroanatomy</i>. Frontiers. <a href="https://doi.org/10.3389/fnana.2022.846615">https://doi.org/10.3389/fnana.2022.846615</a>
  chicago: Eguchi, Kohgaku, Jacqueline-Claire Montanaro-Punzengruber, Elodie Le Monnier,
    and Ryuichi Shigemoto. “The Number and Distinct Clustering Patterns of Voltage-Gated
    Calcium Channels in Nerve Terminals.” <i>Frontiers in Neuroanatomy</i>. Frontiers,
    2022. <a href="https://doi.org/10.3389/fnana.2022.846615">https://doi.org/10.3389/fnana.2022.846615</a>.
  ieee: K. Eguchi, J.-C. Montanaro-Punzengruber, E. Le Monnier, and R. Shigemoto,
    “The number and distinct clustering patterns of voltage-gated Calcium channels
    in nerve terminals,” <i>Frontiers in Neuroanatomy</i>, vol. 16. Frontiers, 2022.
  ista: Eguchi K, Montanaro-Punzengruber J-C, Le Monnier E, Shigemoto R. 2022. The
    number and distinct clustering patterns of voltage-gated Calcium channels in nerve
    terminals. Frontiers in Neuroanatomy. 16, 846615.
  mla: Eguchi, Kohgaku, et al. “The Number and Distinct Clustering Patterns of Voltage-Gated
    Calcium Channels in Nerve Terminals.” <i>Frontiers in Neuroanatomy</i>, vol. 16,
    846615, Frontiers, 2022, doi:<a href="https://doi.org/10.3389/fnana.2022.846615">10.3389/fnana.2022.846615</a>.
  short: K. Eguchi, J.-C. Montanaro-Punzengruber, E. Le Monnier, R. Shigemoto, Frontiers
    in Neuroanatomy 16 (2022).
corr_author: '1'
date_created: 2022-03-20T23:01:39Z
date_published: 2022-02-24T00:00:00Z
date_updated: 2026-04-16T08:18:54Z
day: '24'
ddc:
- '570'
department:
- _id: RySh
doi: 10.3389/fnana.2022.846615
ec_funded: 1
external_id:
  isi:
  - '000766662700001'
  pmid:
  - '35280978'
file:
- access_level: open_access
  checksum: 51ec9b90e7da919e22c01a15489eaacd
  content_type: application/pdf
  creator: dernst
  date_created: 2022-03-21T09:41:19Z
  date_updated: 2022-03-21T09:41:19Z
  file_id: '10911'
  file_name: 2022_FrontiersNeuroanatomy_Eguchi.pdf
  file_size: 2416395
  relation: main_file
  success: 1
file_date_updated: 2022-03-21T09:41:19Z
has_accepted_license: '1'
intvolume: '        16'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 05970B30-7A3F-11EA-A408-12923DDC885E
  grant_number: I04638
  name: LGI1 antibody-induced pathophysiology in synapses
publication: Frontiers in Neuroanatomy
publication_identifier:
  eissn:
  - 1662-5129
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: The number and distinct clustering patterns of voltage-gated Calcium channels
  in nerve terminals
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 16
year: '2022'
...
---
_id: '10889'
abstract:
- lang: eng
  text: Genetically encoded tags have introduced extensive lines of application from
    purification of tagged proteins to their visualization at the single molecular,
    cellular, histological and whole-body levels. Combined with other rapidly developing
    technologies such as clustered regularly interspaced palindromic repeats (CRISPR)/CRISPR-associated
    protein 9 (Cas9) system, proteomics, super-resolution microscopy and proximity
    labeling, a large variety of genetically encoded tags have been developed in the
    last two decades. In this review, I focus on the current status of tag development
    for electron microscopic (EM) visualization of proteins with metal particle labeling.
    Compared with conventional immunoelectron microscopy using gold particles, tag-mediated
    metal particle labeling has several advantages that could potentially improve
    the sensitivity, spatial and temporal resolution, and applicability to a wide
    range of proteins of interest (POIs). It may enable researchers to detect single
    molecules in situ, allowing the quantitative measurement of absolute numbers and
    exact localization patterns of POI in the ultrastructural context. Thus, genetically
    encoded tags for EM could revolutionize the field as green fluorescence protein
    did for light microscopy, although we still have many challenges to overcome before
    reaching this goal.
acknowledgement: European Research Council Advanced Grant (694539 to R.S.).
article_processing_charge: No
article_type: original
author:
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Shigemoto R. Electron microscopic visualization of single molecules by tag-mediated
    metal particle labeling. <i>Microscopy</i>. 2022;71(Supplement_1):i72-i80. doi:<a
    href="https://doi.org/10.1093/jmicro/dfab048">10.1093/jmicro/dfab048</a>
  apa: Shigemoto, R. (2022). Electron microscopic visualization of single molecules
    by tag-mediated metal particle labeling. <i>Microscopy</i>. Oxford University
    Press. <a href="https://doi.org/10.1093/jmicro/dfab048">https://doi.org/10.1093/jmicro/dfab048</a>
  chicago: Shigemoto, Ryuichi. “Electron Microscopic Visualization of Single Molecules
    by Tag-Mediated Metal Particle Labeling.” <i>Microscopy</i>. Oxford University
    Press, 2022. <a href="https://doi.org/10.1093/jmicro/dfab048">https://doi.org/10.1093/jmicro/dfab048</a>.
  ieee: R. Shigemoto, “Electron microscopic visualization of single molecules by tag-mediated
    metal particle labeling,” <i>Microscopy</i>, vol. 71, no. Supplement_1. Oxford
    University Press, pp. i72–i80, 2022.
  ista: Shigemoto R. 2022. Electron microscopic visualization of single molecules
    by tag-mediated metal particle labeling. Microscopy. 71(Supplement_1), i72–i80.
  mla: Shigemoto, Ryuichi. “Electron Microscopic Visualization of Single Molecules
    by Tag-Mediated Metal Particle Labeling.” <i>Microscopy</i>, vol. 71, no. Supplement_1,
    Oxford University Press, 2022, pp. i72–80, doi:<a href="https://doi.org/10.1093/jmicro/dfab048">10.1093/jmicro/dfab048</a>.
  short: R. Shigemoto, Microscopy 71 (2022) i72–i80.
corr_author: '1'
date_created: 2022-03-20T23:01:39Z
date_published: 2022-03-01T00:00:00Z
date_updated: 2026-06-18T10:44:57Z
day: '01'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1093/jmicro/dfab048
ec_funded: 1
external_id:
  isi:
  - '000768384100011'
  pmid:
  - '35275179'
intvolume: '        71'
isi: 1
issue: Supplement_1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1093/jmicro/dfab048
month: '03'
oa: 1
oa_version: Published Version
page: i72-i80
pmid: 1
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
publication: Microscopy
publication_identifier:
  eissn:
  - 2050-5701
  issn:
  - 2050-5698
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Electron microscopic visualization of single molecules by tag-mediated metal
  particle labeling
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 71
year: '2022'
...
---
_id: '11333'
abstract:
- lang: eng
  text: Adenosine triphosphate (ATP) is the energy source for various biochemical
    processes and biomolecular motors in living things. Development of ATP antagonists
    and their stimuli-controlled actions offer a novel approach to regulate biological
    processes. Herein, we developed azobenzene-based photoswitchable ATP antagonists
    for controlling the activity of motor proteins; cytoplasmic and axonemal dyneins.
    The new ATP antagonists showed reversible photoswitching of cytoplasmic dynein
    activity in an in vitro dynein-microtubule system due to the trans and cis photoisomerization
    of their azobenzene segment. Importantly, our ATP antagonists reversibly regulated
    the axonemal dynein motor activity for the force generation in a demembranated
    model of Chlamydomonas reinhardtii. We found that the trans and cis isomers of
    ATP antagonists significantly differ in their affinity to the ATP binding site.
article_number: e202200807
article_processing_charge: No
article_type: original
author:
- first_name: Sampreeth
  full_name: Thayyil, Sampreeth
  last_name: Thayyil
- first_name: Yukinori
  full_name: Nishigami, Yukinori
  last_name: Nishigami
- first_name: Muhammad J
  full_name: Islam, Muhammad J
  id: C94881D2-008F-11EA-8E08-2637E6697425
  last_name: Islam
- first_name: P. K.
  full_name: Hashim, P. K.
  last_name: Hashim
- first_name: Ken'Ya
  full_name: Furuta, Ken'Ya
  last_name: Furuta
- first_name: Kazuhiro
  full_name: Oiwa, Kazuhiro
  last_name: Oiwa
- first_name: Jian
  full_name: Yu, Jian
  last_name: Yu
- first_name: Min
  full_name: Yao, Min
  last_name: Yao
- first_name: Toshiyuki
  full_name: Nakagaki, Toshiyuki
  last_name: Nakagaki
- first_name: Nobuyuki
  full_name: Tamaoki, Nobuyuki
  last_name: Tamaoki
citation:
  ama: Thayyil S, Nishigami Y, Islam MJ, et al. Dynamic control of microbial movement
    by photoswitchable ATP antagonists. <i>Chemistry - A European Journal</i>. 2022;28(30).
    doi:<a href="https://doi.org/10.1002/chem.202200807">10.1002/chem.202200807</a>
  apa: Thayyil, S., Nishigami, Y., Islam, M. J., Hashim, P. K., Furuta, K., Oiwa,
    K., … Tamaoki, N. (2022). Dynamic control of microbial movement by photoswitchable
    ATP antagonists. <i>Chemistry - A European Journal</i>. Wiley. <a href="https://doi.org/10.1002/chem.202200807">https://doi.org/10.1002/chem.202200807</a>
  chicago: Thayyil, Sampreeth, Yukinori Nishigami, Muhammad J Islam, P. K. Hashim,
    Ken’Ya Furuta, Kazuhiro Oiwa, Jian Yu, Min Yao, Toshiyuki Nakagaki, and Nobuyuki
    Tamaoki. “Dynamic Control of Microbial Movement by Photoswitchable ATP Antagonists.”
    <i>Chemistry - A European Journal</i>. Wiley, 2022. <a href="https://doi.org/10.1002/chem.202200807">https://doi.org/10.1002/chem.202200807</a>.
  ieee: S. Thayyil <i>et al.</i>, “Dynamic control of microbial movement by photoswitchable
    ATP antagonists,” <i>Chemistry - A European Journal</i>, vol. 28, no. 30. Wiley,
    2022.
  ista: Thayyil S, Nishigami Y, Islam MJ, Hashim PK, Furuta K, Oiwa K, Yu J, Yao M,
    Nakagaki T, Tamaoki N. 2022. Dynamic control of microbial movement by photoswitchable
    ATP antagonists. Chemistry - A European Journal. 28(30), e202200807.
  mla: Thayyil, Sampreeth, et al. “Dynamic Control of Microbial Movement by Photoswitchable
    ATP Antagonists.” <i>Chemistry - A European Journal</i>, vol. 28, no. 30, e202200807,
    Wiley, 2022, doi:<a href="https://doi.org/10.1002/chem.202200807">10.1002/chem.202200807</a>.
  short: S. Thayyil, Y. Nishigami, M.J. Islam, P.K. Hashim, K. Furuta, K. Oiwa, J.
    Yu, M. Yao, T. Nakagaki, N. Tamaoki, Chemistry - A European Journal 28 (2022).
date_created: 2022-04-24T22:01:44Z
date_published: 2022-05-25T00:00:00Z
date_updated: 2026-06-18T10:49:46Z
day: '25'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1002/chem.202200807
external_id:
  isi:
  - '000781658800001'
  pmid:
  - '35332959'
intvolume: '        28'
isi: 1
issue: '30'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/chem.202200807
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: Chemistry - A European Journal
publication_identifier:
  eissn:
  - 1521-3765
  issn:
  - 0947-6539
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamic control of microbial movement by photoswitchable ATP antagonists
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2022'
...
---
OA_place: publisher
_id: '11393'
abstract:
- lang: eng
  text: "AMPA receptors (AMPARs) mediate fast excitatory neurotransmission and their
    role is\r\nimplicated in complex processes such as learning and memory and various
    neurological\r\ndiseases. These receptors are composed of different subunits and
    the subunit composition can\r\naffect channel properties, receptor trafficking
    and interaction with other associated proteins.\r\nUsing the high sensitivity
    SDS-digested freeze-fracture replica labeling (SDS-FRL) for\r\nelectron microscopy
    I investigated the number, density, and localization of AMPAR subunits,\r\nGluA1,
    GluA2, GluA3, and GluA1-3 (panAMPA) in pyramidal cells in the CA1 area of mouse\r\nhippocampus.
    I have found that the immunogold labeling for all of these subunits in the\r\npostsynaptic
    sites was highest in stratum radiatum and lowest in stratum lacunosummoleculare.
    The labeling density for the all subunits in the extrasynaptic sites showed a
    gradual\r\nincrease from the pyramidal cell soma towards the distal part of stratum
    radiatum. The densities\r\nof extrasynaptic GluA1, GluA2 and panAMPA labeling
    reached 10-15% of synaptic densities,\r\nwhile the ratio of extrasynaptic labeling
    for GluA3 was significantly lower compared than those\r\nfor other subunits. The
    labeling patterns for GluA1, GluA2 and GluA1-3 are similar and their\r\ndensities
    were higher in the periphery than center of synapses. In contrast, the GluA3-\r\ncontaining
    receptors were more centrally localized compared to the GluA1- and GluA2-\r\ncontaining
    receptors.\r\nThe hippocampus plays a central role in learning and memory. Contextual
    learning has been\r\nshown to require the delivery of AMPA receptors to CA1 synapses
    in the dorsal hippocampus.\r\nHowever, proximodistal heterogeneity of this plasticity
    and particular contribution of different\r\nAMPA receptor subunits are not fully
    understood. By combining inhibitory avoidance task, a\r\nhippocampus-dependent
    contextual fear-learning paradigm, with SDS-FRL, I have revealed an\r\nincrease
    in synaptic density specific to GluA1-containing AMPA receptors in the CA1 area.\r\nThe
    intrasynaptic distribution of GluA1 also changed from the periphery to center-preferred\r\npattern.
    Furthermore, this synaptic plasticity was evident selectively in stratum radiatum
    but\r\nnot stratum oriens, and in the CA1 subregion proximal but not distal to
    CA2. These findings\r\nfurther contribute to our understanding of how specific
    hippocampal subregions and AMPA\r\nreceptor subunits are involved in physiological
    learning.\r\nAlthough the immunolabeling results above shed light on subunit-specific
    plasticity in\r\nAMPAR distribution, no tools to visualize and study the subunit
    composition at the single\r\nchannel level in situ have been available. Electron
    microscopy with conventional immunogold\r\nlabeling approaches has limitations
    in the single channel analysis because of the large size of\r\nantibodies and
    steric hindrance hampering multiple subunit labeling of single channels. I\r\nmanaged
    to develop a new chemical labeling system using a short peptide tag and small\r\nsynthetic
    probes, which form specific covalent bond with a cysteine residue in the tag fused
    to\r\nproteins of interest (reactive tag system). I additionally made substantial
    progress into adapting\r\nthis system for AMPA receptor subunits."
acknowledged_ssus:
- _id: EM-Fac
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Marijo
  full_name: Jevtic, Marijo
  id: 4BE3BC94-F248-11E8-B48F-1D18A9856A87
  last_name: Jevtic
citation:
  ama: Jevtic M. Contextual fear learning induced changes in AMPA receptor subtypes
    along the proximodistal axis in dorsal hippocampus. 2022. doi:<a href="https://doi.org/10.15479/at:ista:11393">10.15479/at:ista:11393</a>
  apa: Jevtic, M. (2022). <i>Contextual fear learning induced changes in AMPA receptor
    subtypes along the proximodistal axis in dorsal hippocampus</i>. Institute of
    Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:11393">https://doi.org/10.15479/at:ista:11393</a>
  chicago: Jevtic, Marijo. “Contextual Fear Learning Induced Changes in AMPA Receptor
    Subtypes along the Proximodistal Axis in Dorsal Hippocampus.” Institute of Science
    and Technology Austria, 2022. <a href="https://doi.org/10.15479/at:ista:11393">https://doi.org/10.15479/at:ista:11393</a>.
  ieee: M. Jevtic, “Contextual fear learning induced changes in AMPA receptor subtypes
    along the proximodistal axis in dorsal hippocampus,” Institute of Science and
    Technology Austria, 2022.
  ista: Jevtic M. 2022. Contextual fear learning induced changes in AMPA receptor
    subtypes along the proximodistal axis in dorsal hippocampus. Institute of Science
    and Technology Austria.
  mla: Jevtic, Marijo. <i>Contextual Fear Learning Induced Changes in AMPA Receptor
    Subtypes along the Proximodistal Axis in Dorsal Hippocampus</i>. Institute of
    Science and Technology Austria, 2022, doi:<a href="https://doi.org/10.15479/at:ista:11393">10.15479/at:ista:11393</a>.
  short: M. Jevtic, Contextual Fear Learning Induced Changes in AMPA Receptor Subtypes
    along the Proximodistal Axis in Dorsal Hippocampus, Institute of Science and Technology
    Austria, 2022.
corr_author: '1'
date_created: 2022-05-17T08:57:41Z
date_published: 2022-05-16T00:00:00Z
date_updated: 2026-04-07T14:31:19Z
day: '16'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: RySh
doi: 10.15479/at:ista:11393
file:
- access_level: closed
  checksum: 8fc695d88020d70d231dad0e9f10b138
  content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
  creator: cchlebak
  date_created: 2022-05-17T09:08:06Z
  date_updated: 2023-05-17T22:30:03Z
  embargo_to: open_access
  file_id: '11395'
  file_name: MJ thesis.docx
  file_size: 56427603
  relation: source_file
- access_level: open_access
  checksum: c1dd20a1aece521b3500607b00e463d6
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-05-17T12:09:25Z
  date_updated: 2023-05-17T22:30:03Z
  embargo: 2023-05-16
  file_id: '11397'
  file_name: MJ_thesis_PDFA.pdf
  file_size: 4351981
  relation: main_file
file_date_updated: 2023-05-17T22:30:03Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '108'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '7391'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
title: Contextual fear learning induced changes in AMPA receptor subtypes along the
  proximodistal axis in dorsal hippocampus
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2022'
...
---
_id: '10051'
abstract:
- lang: eng
  text: 'Rab-interacting molecule (RIM)-binding protein 2 (BP2) is a multidomain protein
    of the presynaptic active zone (AZ). By binding to RIM, bassoon (Bsn), and voltage-gated
    Ca2+ channels (CaV), it is considered to be a central organizer of the topography
    of CaV and release sites of synaptic vesicles (SVs) at the AZ. Here, we used RIM-BP2
    knock-out (KO) mice and their wild-type (WT) littermates of either sex to investigate
    the role of RIM-BP2 at the endbulb of Held synapse of auditory nerve fibers (ANFs)
    with bushy cells (BCs) of the cochlear nucleus, a fast relay of the auditory pathway
    with high release probability. Disruption of RIM-BP2 lowered release probability
    altering short-term plasticity and reduced evoked EPSCs. Analysis of SV pool dynamics
    during high-frequency train stimulation indicated a reduction of SVs with high
    release probability but an overall normal size of the readily releasable SV pool
    (RRP). The Ca2+-dependent fast component of SV replenishment after RRP depletion
    was slowed. Ultrastructural analysis by superresolution light and electron microscopy
    revealed an impaired topography of presynaptic CaV and a reduction of docked and
    membrane-proximal SVs at the AZ. We conclude that RIM-BP2 organizes the topography
    of CaV, and promotes SV tethering and docking. This way RIM-BP2 is critical for
    establishing a high initial release probability as required to reliably signal
    sound onset information that we found to be degraded in BCs of RIM-BP2-deficient
    mice in vivo. SIGNIFICANCE STATEMENT: Rab-interacting molecule (RIM)-binding proteins
    (BPs) are key organizers of the active zone (AZ). Using a multidisciplinary approach
    to the calyceal endbulb of Held synapse that transmits auditory information at
    rates of up to hundreds of Hertz with submillisecond precision we demonstrate
    a requirement for RIM-BP2 for normal auditory signaling. Endbulb synapses lacking
    RIM-BP2 show a reduced release probability despite normal whole-terminal Ca2+
    influx and abundance of the key priming protein Munc13-1, a reduced rate of SV
    replenishment, as well as an altered topography of voltage-gated (CaV)2.1 Ca2+
    channels, and fewer docked and membrane proximal synaptic vesicles (SVs). This
    hampers transmission of sound onset information likely affecting downstream neural
    computations such as of sound localization.'
acknowledgement: This work was supported by the Deutsche Forschungsgemeinschaft (DFG,
  German Research Foundation) through the Collaborative Sensory Research Center 1286
  [to C.W. (A4) and T.M. (B5)] and under Germany’s Excellence Strategy Grant EXC 2067/1-390729940.
  We thank S. Gerke, A.J. Goldak, and C. Senger-Freitag for expert technical assistance;
  G. Hoch for developing image analysis routines; and S. Chepurwar and N. Strenzke
  for technical support and discussion regarding in vivo experiments. We also thank
  Dr. Christian Rosenmund, Dr. Katharina Grauel, and Dr. Stephan Sigrist for providing
  RIM-BP2 KO mice and Dr. Masahiko Watanabe for providing the anti-neurexin-antibody,
  and Dr. Toshihisa Ohtsuka for the anti-ELKS-antibody. J. Neef for help with the
  STED imaging and image analysis; E. Neher and S. Rizzoli for discussion and comments
  on the manuscript; K. Eguchi for help with the statistical analysis; and C. H. Huang
  and J. Neef for constant support and scientific discussion.
article_processing_charge: No
article_type: original
author:
- first_name: Tanvi
  full_name: Butola, Tanvi
  last_name: Butola
- first_name: Theocharis
  full_name: Alvanos, Theocharis
  last_name: Alvanos
- first_name: Anika
  full_name: Hintze, Anika
  last_name: Hintze
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Carolin
  full_name: Wichmann, Carolin
  last_name: Wichmann
- first_name: Tobias
  full_name: Moser, Tobias
  last_name: Moser
citation:
  ama: Butola T, Alvanos T, Hintze A, et al. RIM-binding protein 2 organizes Ca<sup>21</sup>
    channel topography and regulates release probability and vesicle replenishment
    at a fast central synapse. <i>Journal of Neuroscience</i>. 2021;41(37):7742-7767.
    doi:<a href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">10.1523/JNEUROSCI.0586-21.2021</a>
  apa: Butola, T., Alvanos, T., Hintze, A., Koppensteiner, P., Kleindienst, D., Shigemoto,
    R., … Moser, T. (2021). RIM-binding protein 2 organizes Ca<sup>21</sup> channel
    topography and regulates release probability and vesicle replenishment at a fast
    central synapse. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a
    href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">https://doi.org/10.1523/JNEUROSCI.0586-21.2021</a>
  chicago: Butola, Tanvi, Theocharis Alvanos, Anika Hintze, Peter Koppensteiner, David
    Kleindienst, Ryuichi Shigemoto, Carolin Wichmann, and Tobias Moser. “RIM-Binding
    Protein 2 Organizes Ca<sup>21</sup> Channel Topography and Regulates Release Probability
    and Vesicle Replenishment at a Fast Central Synapse.” <i>Journal of Neuroscience</i>.
    Society for Neuroscience, 2021. <a href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">https://doi.org/10.1523/JNEUROSCI.0586-21.2021</a>.
  ieee: T. Butola <i>et al.</i>, “RIM-binding protein 2 organizes Ca<sup>21</sup>
    channel topography and regulates release probability and vesicle replenishment
    at a fast central synapse,” <i>Journal of Neuroscience</i>, vol. 41, no. 37. Society
    for Neuroscience, pp. 7742–7767, 2021.
  ista: Butola T, Alvanos T, Hintze A, Koppensteiner P, Kleindienst D, Shigemoto R,
    Wichmann C, Moser T. 2021. RIM-binding protein 2 organizes Ca<sup>21</sup> channel
    topography and regulates release probability and vesicle replenishment at a fast
    central synapse. Journal of Neuroscience. 41(37), 7742–7767.
  mla: Butola, Tanvi, et al. “RIM-Binding Protein 2 Organizes Ca<sup>21</sup> Channel
    Topography and Regulates Release Probability and Vesicle Replenishment at a Fast
    Central Synapse.” <i>Journal of Neuroscience</i>, vol. 41, no. 37, Society for
    Neuroscience, 2021, pp. 7742–67, doi:<a href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">10.1523/JNEUROSCI.0586-21.2021</a>.
  short: T. Butola, T. Alvanos, A. Hintze, P. Koppensteiner, D. Kleindienst, R. Shigemoto,
    C. Wichmann, T. Moser, Journal of Neuroscience 41 (2021) 7742–7767.
date_created: 2021-09-27T14:33:13Z
date_published: 2021-09-15T00:00:00Z
date_updated: 2023-08-14T06:56:30Z
day: '15'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1523/JNEUROSCI.0586-21.2021
external_id:
  isi:
  - '000752287700005'
  pmid:
  - '34353898'
file:
- access_level: open_access
  checksum: 769ab627c7355a50ccfd445e43a5f351
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-31T09:10:15Z
  date_updated: 2022-05-31T09:10:15Z
  file_id: '11423'
  file_name: 2021_JourNeuroscience_Butola.pdf
  file_size: 11571961
  relation: main_file
  success: 1
file_date_updated: 2022-05-31T09:10:15Z
has_accepted_license: '1'
intvolume: '        41'
isi: 1
issue: '37'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 7742-7767
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  eissn:
  - 1529-2401
  issn:
  - 0270-6474
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
scopus_import: '1'
status: public
title: RIM-binding protein 2 organizes Ca<sup>21</sup> channel topography and regulates
  release probability and vesicle replenishment at a fast central synapse
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2021'
...
---
_id: '10403'
abstract:
- lang: eng
  text: Synaptic transmission, connectivity, and dendritic morphology mature in parallel
    during brain development and are often disrupted in neurodevelopmental disorders.
    Yet how these changes influence the neuronal computations necessary for normal
    brain function are not well understood. To identify cellular mechanisms underlying
    the maturation of synaptic integration in interneurons, we combined patch-clamp
    recordings of excitatory inputs in mouse cerebellar stellate cells (SCs), three-dimensional
    reconstruction of SC morphology with excitatory synapse location, and biophysical
    modeling. We found that postnatal maturation of postsynaptic strength was homogeneously
    reduced along the somatodendritic axis, but dendritic integration was always sublinear.
    However, dendritic branching increased without changes in synapse density, leading
    to a substantial gain in distal inputs. Thus, changes in synapse distribution,
    rather than dendrite cable properties, are the dominant mechanism underlying the
    maturation of neuronal computation. These mechanisms favor the emergence of a
    spatially compartmentalized two-stage integration model promoting location-dependent
    integration within dendritic subunits.
acknowledgement: This study was supported by the Centre National de la Recherche Scientifique
  and the Agence Nationale de la Recherche (ANR-13-BSV4-00166, to LC and DAD). TA
  was supported by fellowships from the Fondation pour la Recherche Medicale and the
  Swedish Research Council. We thank Dmitry Ershov from the Image Analysis Hub of
  the Institut Pasteur, Elodie Le Monnier, Elena Hollergschwandtner, Vanessa Zheden,
  and Corinne Nantet for technical support and Haining Zhong for providing the Venus-tagged
  PSD95 mouse line. We would like to thank Alberto Bacci, Ann Lohof, and Nelson Rebola
  for comments on the manuscript.
article_number: e65954
article_processing_charge: No
article_type: original
author:
- first_name: Celia
  full_name: Biane, Celia
  last_name: Biane
- first_name: Florian
  full_name: Rückerl, Florian
  last_name: Rückerl
- first_name: Therese
  full_name: Abrahamsson, Therese
  last_name: Abrahamsson
- first_name: Cécile
  full_name: Saint-Cloment, Cécile
  last_name: Saint-Cloment
- first_name: Jean
  full_name: Mariani, Jean
  last_name: Mariani
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: David A.
  full_name: Digregorio, David A.
  last_name: Digregorio
- first_name: Rachel M.
  full_name: Sherrard, Rachel M.
  last_name: Sherrard
- first_name: Laurence
  full_name: Cathala, Laurence
  last_name: Cathala
citation:
  ama: Biane C, Rückerl F, Abrahamsson T, et al. Developmental emergence of two-stage
    nonlinear synaptic integration in cerebellar interneurons. <i>eLife</i>. 2021;10.
    doi:<a href="https://doi.org/10.7554/eLife.65954">10.7554/eLife.65954</a>
  apa: Biane, C., Rückerl, F., Abrahamsson, T., Saint-Cloment, C., Mariani, J., Shigemoto,
    R., … Cathala, L. (2021). Developmental emergence of two-stage nonlinear synaptic
    integration in cerebellar interneurons. <i>ELife</i>. eLife Sciences Publications.
    <a href="https://doi.org/10.7554/eLife.65954">https://doi.org/10.7554/eLife.65954</a>
  chicago: Biane, Celia, Florian Rückerl, Therese Abrahamsson, Cécile Saint-Cloment,
    Jean Mariani, Ryuichi Shigemoto, David A. Digregorio, Rachel M. Sherrard, and
    Laurence Cathala. “Developmental Emergence of Two-Stage Nonlinear Synaptic Integration
    in Cerebellar Interneurons.” <i>ELife</i>. eLife Sciences Publications, 2021.
    <a href="https://doi.org/10.7554/eLife.65954">https://doi.org/10.7554/eLife.65954</a>.
  ieee: C. Biane <i>et al.</i>, “Developmental emergence of two-stage nonlinear synaptic
    integration in cerebellar interneurons,” <i>eLife</i>, vol. 10. eLife Sciences
    Publications, 2021.
  ista: Biane C, Rückerl F, Abrahamsson T, Saint-Cloment C, Mariani J, Shigemoto R,
    Digregorio DA, Sherrard RM, Cathala L. 2021. Developmental emergence of two-stage
    nonlinear synaptic integration in cerebellar interneurons. eLife. 10, e65954.
  mla: Biane, Celia, et al. “Developmental Emergence of Two-Stage Nonlinear Synaptic
    Integration in Cerebellar Interneurons.” <i>ELife</i>, vol. 10, e65954, eLife
    Sciences Publications, 2021, doi:<a href="https://doi.org/10.7554/eLife.65954">10.7554/eLife.65954</a>.
  short: C. Biane, F. Rückerl, T. Abrahamsson, C. Saint-Cloment, J. Mariani, R. Shigemoto,
    D.A. Digregorio, R.M. Sherrard, L. Cathala, ELife 10 (2021).
date_created: 2021-12-05T23:01:40Z
date_published: 2021-11-03T00:00:00Z
date_updated: 2025-03-07T08:12:39Z
day: '03'
ddc:
- '570'
department:
- _id: RySh
doi: 10.7554/eLife.65954
external_id:
  isi:
  - '000715789500001'
  pmid:
  - '34730085'
file:
- access_level: open_access
  checksum: c7c33c3319428d56e332e22349c50ed3
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-12-10T08:31:41Z
  date_updated: 2021-12-10T08:31:41Z
  file_id: '10528'
  file_name: 2021_eLife_Biane.pdf
  file_size: 13131322
  relation: main_file
  success: 1
file_date_updated: 2021-12-10T08:31:41Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Developmental emergence of two-stage nonlinear synaptic integration in cerebellar
  interneurons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2021'
...
---
_id: '9330'
abstract:
- lang: eng
  text: In nerve cells the genes encoding for α2δ subunits of voltage-gated calcium
    channels have been linked to synaptic functions and neurological disease. Here
    we show that α2δ subunits are essential for the formation and organization of
    glutamatergic synapses. Using a cellular α2δ subunit triple-knockout/knockdown
    model, we demonstrate a failure in presynaptic differentiation evidenced by defective
    presynaptic calcium channel clustering and calcium influx, smaller presynaptic
    active zones, and a strongly reduced accumulation of presynaptic vesicle-associated
    proteins (synapsin and vGLUT). The presynaptic defect is associated with the downscaling
    of postsynaptic AMPA receptors and the postsynaptic density. The role of α2δ isoforms
    as synaptic organizers is highly redundant, as each individual α2δ isoform can
    rescue presynaptic calcium channel trafficking and expression of synaptic proteins.
    Moreover, α2δ-2 and α2δ-3 with mutated metal ion-dependent adhesion sites can
    fully rescue presynaptic synapsin expression but only partially calcium channel
    trafficking, suggesting that the regulatory role of α2δ subunits is independent
    from its role as a calcium channel subunit. Our findings influence the current
    view on excitatory synapse formation. First, our study suggests that postsynaptic
    differentiation is secondary to presynaptic differentiation. Second, the dependence
    of presynaptic differentiation on α2δ implicates α2δ subunits as potential nucleation
    points for the organization of synapses. Finally, our results suggest that α2δ
    subunits act as transsynaptic organizers of glutamatergic synapses, thereby aligning
    the synaptic active zone with the postsynaptic density.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: "We thank Arnold Schwartz for providing α2δ-1 knockout mice; Ariane
  Benedetti, Sabine Baumgartner, Sandra Demetz, and Irene Mahlknecht for technical
  support; Nadine Ortner and Andreas Lieb for electrophysiological experiments; the
  team of the Electron Microscopy Facility at the Institute of Science and Technology
  Austria for technical support related to ultrastructural analysis; Hermann Dietrich
  and Anja Beierfuß and her team for animal care; Jutta Engel and Jörg Striessnig
  for critical discussions; and Bruno Benedetti and Bernhard Flucher for critical
  discussions and reading the manuscript. This study was supported by Austrian Science
  Fund Grants P24079, F44060, F44150, and DOC30-B30 (to G.J.O.) and T855 (to M.C.),
  European Research Council Grant AdG 694539 (to R.S.), Deutsche Forschungsgemeinschaft\r\nGrant
  SFB1348-TP A03 (to M.M.), and Interdisziplinäre Zentrum für Klinische Forschung
  Münster Grant Mi3/004/19 (to M.M.). This work is part of the PhD theses of C.L.S.,
  S.M.G., and C.A."
article_processing_charge: No
article_type: original
author:
- first_name: Clemens L.
  full_name: Schöpf, Clemens L.
  last_name: Schöpf
- first_name: Cornelia
  full_name: Ablinger, Cornelia
  last_name: Ablinger
- first_name: Stefanie M.
  full_name: Geisler, Stefanie M.
  last_name: Geisler
- first_name: Ruslan I.
  full_name: Stanika, Ruslan I.
  last_name: Stanika
- first_name: Marta
  full_name: Campiglio, Marta
  last_name: Campiglio
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Benedikt
  full_name: Nimmervoll, Benedikt
  last_name: Nimmervoll
- first_name: Bettina
  full_name: Schlick, Bettina
  last_name: Schlick
- first_name: Johannes
  full_name: Brockhaus, Johannes
  last_name: Brockhaus
- first_name: Markus
  full_name: Missler, Markus
  last_name: Missler
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Gerald J.
  full_name: Obermair, Gerald J.
  last_name: Obermair
citation:
  ama: Schöpf CL, Ablinger C, Geisler SM, et al. Presynaptic α2δ subunits are key
    organizers of glutamatergic synapses. <i>Proceedings of the National Academy of
    Sciences of the United States of America</i>. 2021;118(14). doi:<a href="https://doi.org/10.1073/pnas.1920827118">10.1073/pnas.1920827118</a>
  apa: Schöpf, C. L., Ablinger, C., Geisler, S. M., Stanika, R. I., Campiglio, M.,
    Kaufmann, W., … Obermair, G. J. (2021). Presynaptic α2δ subunits are key organizers
    of glutamatergic synapses. <i>Proceedings of the National Academy of Sciences
    of the United States of America</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1920827118">https://doi.org/10.1073/pnas.1920827118</a>
  chicago: Schöpf, Clemens L., Cornelia Ablinger, Stefanie M. Geisler, Ruslan I. Stanika,
    Marta Campiglio, Walter Kaufmann, Benedikt Nimmervoll, et al. “Presynaptic Α2δ
    Subunits Are Key Organizers of Glutamatergic Synapses.” <i>Proceedings of the
    National Academy of Sciences of the United States of America</i>. National Academy
    of Sciences, 2021. <a href="https://doi.org/10.1073/pnas.1920827118">https://doi.org/10.1073/pnas.1920827118</a>.
  ieee: C. L. Schöpf <i>et al.</i>, “Presynaptic α2δ subunits are key organizers of
    glutamatergic synapses,” <i>Proceedings of the National Academy of Sciences of
    the United States of America</i>, vol. 118, no. 14. National Academy of Sciences,
    2021.
  ista: Schöpf CL, Ablinger C, Geisler SM, Stanika RI, Campiglio M, Kaufmann W, Nimmervoll
    B, Schlick B, Brockhaus J, Missler M, Shigemoto R, Obermair GJ. 2021. Presynaptic
    α2δ subunits are key organizers of glutamatergic synapses. Proceedings of the
    National Academy of Sciences of the United States of America. 118(14).
  mla: Schöpf, Clemens L., et al. “Presynaptic Α2δ Subunits Are Key Organizers of
    Glutamatergic Synapses.” <i>Proceedings of the National Academy of Sciences of
    the United States of America</i>, vol. 118, no. 14, National Academy of Sciences,
    2021, doi:<a href="https://doi.org/10.1073/pnas.1920827118">10.1073/pnas.1920827118</a>.
  short: C.L. Schöpf, C. Ablinger, S.M. Geisler, R.I. Stanika, M. Campiglio, W. Kaufmann,
    B. Nimmervoll, B. Schlick, J. Brockhaus, M. Missler, R. Shigemoto, G.J. Obermair,
    Proceedings of the National Academy of Sciences of the United States of America
    118 (2021).
date_created: 2021-04-18T22:01:40Z
date_published: 2021-04-06T00:00:00Z
date_updated: 2025-06-12T06:56:21Z
day: '06'
ddc:
- '570'
department:
- _id: EM-Fac
- _id: RySh
doi: 10.1073/pnas.1920827118
ec_funded: 1
external_id:
  isi:
  - '000637398300002'
  pmid:
  - '33782113'
file:
- access_level: open_access
  checksum: dd014f68ae9d7d8d8fc4139a24e04506
  content_type: application/pdf
  creator: dernst
  date_created: 2021-04-19T10:10:56Z
  date_updated: 2021-04-19T10:10:56Z
  file_id: '9340'
  file_name: 2021_PNAS_Schoepf.pdf
  file_size: 2603911
  relation: main_file
  success: 1
file_date_updated: 2021-04-19T10:10:56Z
has_accepted_license: '1'
intvolume: '       118'
isi: 1
issue: '14'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Presynaptic α2δ subunits are key organizers of glutamatergic synapses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 118
year: '2021'
...
---
_id: '9641'
abstract:
- lang: eng
  text: At the encounter with a novel environment, contextual memory formation is
    greatly enhanced, accompanied with increased arousal and active exploration. Although
    this phenomenon has been widely observed in animal and human daily life, how the
    novelty in the environment is detected and contributes to contextual memory formation
    has lately started to be unveiled. The hippocampus has been studied for many decades
    for its largely known roles in encoding spatial memory, and a growing body of
    evidence indicates a differential involvement of dorsal and ventral hippocampal
    divisions in novelty detection. In this brief review article, we discuss the recent
    findings of the role of mossy cells in the ventral hippocampal moiety in novelty
    detection and put them in perspective with other novelty-related pathways in the
    hippocampus. We propose a mechanism for novelty-driven memory acquisition in the
    dentate gyrus by the direct projection of ventral mossy cells to dorsal dentate
    granule cells. By this projection, the ventral hippocampus sends novelty signals
    to the dorsal hippocampus, opening a gate for memory encoding in dentate granule
    cells based on information coming from the entorhinal cortex. We conclude that,
    contrary to the presently accepted functional independence, the dorsal and ventral
    hippocampi cooperate to link the novelty and contextual information, and this
    dorso-ventral interaction is crucial for the novelty-dependent memory formation.
acknowledgement: This work was supported by a European Research Council Advanced Grant
  694539 to Ryuichi Shigemoto.
article_number: '107486'
article_processing_charge: No
article_type: original
author:
- first_name: Felipe
  full_name: Fredes, Felipe
  last_name: Fredes
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Fredes F, Shigemoto R. The role of hippocampal mossy cells in novelty detection.
    <i>Neurobiology of Learning and Memory</i>. 2021;183. doi:<a href="https://doi.org/10.1016/j.nlm.2021.107486">10.1016/j.nlm.2021.107486</a>
  apa: Fredes, F., &#38; Shigemoto, R. (2021). The role of hippocampal mossy cells
    in novelty detection. <i>Neurobiology of Learning and Memory</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.nlm.2021.107486">https://doi.org/10.1016/j.nlm.2021.107486</a>
  chicago: Fredes, Felipe, and Ryuichi Shigemoto. “The Role of Hippocampal Mossy Cells
    in Novelty Detection.” <i>Neurobiology of Learning and Memory</i>. Elsevier, 2021.
    <a href="https://doi.org/10.1016/j.nlm.2021.107486">https://doi.org/10.1016/j.nlm.2021.107486</a>.
  ieee: F. Fredes and R. Shigemoto, “The role of hippocampal mossy cells in novelty
    detection,” <i>Neurobiology of Learning and Memory</i>, vol. 183. Elsevier, 2021.
  ista: Fredes F, Shigemoto R. 2021. The role of hippocampal mossy cells in novelty
    detection. Neurobiology of Learning and Memory. 183, 107486.
  mla: Fredes, Felipe, and Ryuichi Shigemoto. “The Role of Hippocampal Mossy Cells
    in Novelty Detection.” <i>Neurobiology of Learning and Memory</i>, vol. 183, 107486,
    Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.nlm.2021.107486">10.1016/j.nlm.2021.107486</a>.
  short: F. Fredes, R. Shigemoto, Neurobiology of Learning and Memory 183 (2021).
date_created: 2021-07-11T22:01:16Z
date_published: 2021-06-30T00:00:00Z
date_updated: 2025-07-10T12:02:00Z
day: '30'
ddc:
- '610'
department:
- _id: RySh
doi: 10.1016/j.nlm.2021.107486
ec_funded: 1
external_id:
  isi:
  - '000677694900004'
  pmid:
  - '34214666'
file:
- access_level: open_access
  checksum: 8e8298a9e8c7df146ad23f32c2a63929
  content_type: application/pdf
  creator: cziletti
  date_created: 2021-07-19T13:46:06Z
  date_updated: 2021-07-19T13:46:06Z
  file_id: '9694'
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isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
publication: Neurobiology of Learning and Memory
publication_identifier:
  eissn:
  - 1095-9564
  issn:
  - 1074-7427
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of hippocampal mossy cells in novelty detection
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 183
year: '2021'
...
---
_id: '7551'
abstract:
- lang: eng
  text: Novelty facilitates formation of memories. The detection of novelty and storage
    of contextual memories are both mediated by the hippocampus, yet the mechanisms
    that link these two functions remain to be defined. Dentate granule cells (GCs)
    of the dorsal hippocampus fire upon novelty exposure forming engrams of contextual
    memory. However, their key excitatory inputs from the entorhinal cortex are not
    responsive to novelty and are insufficient to make dorsal GCs fire reliably. Here
    we uncover a powerful glutamatergic pathway to dorsal GCs from ventral hippocampal
    mossy cells (MCs) that relays novelty, and is necessary and sufficient for driving
    dorsal GCs activation. Furthermore, manipulation of ventral MCs activity bidirectionally
    regulates novelty-induced contextual memory acquisition. Our results show that
    ventral MCs activity controls memory formation through an intra-hippocampal interaction
    mechanism gated by novelty.
acknowledgement: We thank Peter Jonas and Peter Somogyi for critically reading the
  manuscript, Satoshi Kida for helpful discussion, Taijia Makinen for providing the
  Prox1-creERT2 mouse line, and Hiromu Yawo for the VAMP2-Venus construct. We also
  thank Vivek Jayaraman, Ph.D.; Rex A. Kerr, Ph.D.; Douglas S. Kim, Ph.D.; Loren L.
  Looger, Ph.D.; and Karel Svoboda, Ph.D. from the GENIE Project, Janelia Farm Research
  Campus, Howard Hughes Medical Institute for the viral constructs used for GCaMP6s
  expression. We also thank Jacqueline Montanaro, Vanessa Zheden, David Kleindienst,
  and Laura Burnett for technical assistance, as well as Robert Beattie for imaging
  assistance. This work was supported by a European Research Council Advanced Grant
  694539 to R.S.
article_processing_charge: No
article_type: original
author:
- first_name: Felipe A
  full_name: Fredes Tolorza, Felipe A
  id: 384825DA-F248-11E8-B48F-1D18A9856A87
  last_name: Fredes Tolorza
- first_name: Maria A
  full_name: Silva Sifuentes, Maria A
  id: 371B3D6E-F248-11E8-B48F-1D18A9856A87
  last_name: Silva Sifuentes
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: Kenta
  full_name: Kobayashi, Kenta
  last_name: Kobayashi
- first_name: Maximilian A
  full_name: Jösch, Maximilian A
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Fredes Tolorza FA, Silva Sifuentes MA, Koppensteiner P, Kobayashi K, Jösch
    MA, Shigemoto R. Ventro-dorsal hippocampal pathway gates novelty-induced contextual
    memory formation. <i>Current Biology</i>. 2021;31(1):P25-38.E5. doi:<a href="https://doi.org/10.1016/j.cub.2020.09.074">10.1016/j.cub.2020.09.074</a>
  apa: Fredes Tolorza, F. A., Silva Sifuentes, M. A., Koppensteiner, P., Kobayashi,
    K., Jösch, M. A., &#38; Shigemoto, R. (2021). Ventro-dorsal hippocampal pathway
    gates novelty-induced contextual memory formation. <i>Current Biology</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.cub.2020.09.074">https://doi.org/10.1016/j.cub.2020.09.074</a>
  chicago: Fredes Tolorza, Felipe A, Maria A Silva Sifuentes, Peter Koppensteiner,
    Kenta Kobayashi, Maximilian A Jösch, and Ryuichi Shigemoto. “Ventro-Dorsal Hippocampal
    Pathway Gates Novelty-Induced Contextual Memory Formation.” <i>Current Biology</i>.
    Elsevier, 2021. <a href="https://doi.org/10.1016/j.cub.2020.09.074">https://doi.org/10.1016/j.cub.2020.09.074</a>.
  ieee: F. A. Fredes Tolorza, M. A. Silva Sifuentes, P. Koppensteiner, K. Kobayashi,
    M. A. Jösch, and R. Shigemoto, “Ventro-dorsal hippocampal pathway gates novelty-induced
    contextual memory formation,” <i>Current Biology</i>, vol. 31, no. 1. Elsevier,
    p. P25–38.E5, 2021.
  ista: Fredes Tolorza FA, Silva Sifuentes MA, Koppensteiner P, Kobayashi K, Jösch
    MA, Shigemoto R. 2021. Ventro-dorsal hippocampal pathway gates novelty-induced
    contextual memory formation. Current Biology. 31(1), P25–38.E5.
  mla: Fredes Tolorza, Felipe A., et al. “Ventro-Dorsal Hippocampal Pathway Gates
    Novelty-Induced Contextual Memory Formation.” <i>Current Biology</i>, vol. 31,
    no. 1, Elsevier, 2021, p. P25–38.E5, doi:<a href="https://doi.org/10.1016/j.cub.2020.09.074">10.1016/j.cub.2020.09.074</a>.
  short: F.A. Fredes Tolorza, M.A. Silva Sifuentes, P. Koppensteiner, K. Kobayashi,
    M.A. Jösch, R. Shigemoto, Current Biology 31 (2021) P25–38.E5.
date_created: 2020-02-28T10:56:18Z
date_published: 2021-01-11T00:00:00Z
date_updated: 2025-06-12T06:54:22Z
day: '11'
ddc:
- '570'
department:
- _id: MaJö
- _id: RySh
doi: 10.1016/j.cub.2020.09.074
ec_funded: 1
external_id:
  isi:
  - '000614361000020'
  pmid:
  - '33065009'
file:
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  date_created: 2020-10-19T13:31:28Z
  date_updated: 2020-10-19T13:31:28Z
  file_id: '8678'
  file_name: 2021_CurrentBiology_Fredes.pdf
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  relation: main_file
  success: 1
file_date_updated: 2020-10-19T13:31:28Z
has_accepted_license: '1'
intvolume: '        31'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: P25-38.E5
pmid: 1
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
publication: Current Biology
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/remembering-novelty/
scopus_import: '1'
status: public
title: Ventro-dorsal hippocampal pathway gates novelty-induced contextual memory formation
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2021'
...
---
_id: '9437'
abstract:
- lang: eng
  text: The synaptic connection from medial habenula (MHb) to interpeduncular nucleus
    (IPN) is critical for emotion-related behaviors and uniquely expresses R-type
    Ca2+ channels (Cav2.3) and auxiliary GABAB receptor (GBR) subunits, the K+-channel
    tetramerization domain-containing proteins (KCTDs). Activation of GBRs facilitates
    or inhibits transmitter release from MHb terminals depending on the IPN subnucleus,
    but the role of KCTDs is unknown. We therefore examined the localization and function
    of Cav2.3, GBRs, and KCTDs in this pathway in mice. We show in heterologous cells
    that KCTD8 and KCTD12b directly bind to Cav2.3 and that KCTD8 potentiates Cav2.3
    currents in the absence of GBRs. In the rostral IPN, KCTD8, KCTD12b, and Cav2.3
    co-localize at the presynaptic active zone. Genetic deletion indicated a bidirectional
    modulation of Cav2.3-mediated release by these KCTDs with a compensatory increase
    of KCTD8 in the active zone in KCTD12b-deficient mice. The interaction of Cav2.3
    with KCTDs therefore scales synaptic strength independent of GBR activation.
acknowledgement: We are grateful to Akari Hagiwara and Toshihisa Ohtsuka for CAST
  antibody, and Masahiko Watanabe for neurexin antibody. We thank David Adams for
  kindly providing the stable Cav2.3 cell line. Cav2.3 KO mice were kindly provided
  by Tsutomu Tanabe. This project has received funding from the European Research
  Council (ERC) and European Commission (EC), under the European Union’s Horizon 2020
  research and innovation programme (ERC grant agreement no. 694539 to Ryuichi Shigemoto,
  no. 692692 to Peter Jonas, and the Marie Skłodowska-Curie grant agreement no. 665385
  to Cihan Önal), the Swiss National Science Foundation Grant 31003A-172881 to Bernhard
  Bettler and Deutsche Forschungsgemeinschaft (For 2143) and BIOSS-2 to Akos Kulik.
article_number: e68274
article_processing_charge: No
article_type: original
author:
- first_name: Pradeep
  full_name: Bhandari, Pradeep
  id: 45EDD1BC-F248-11E8-B48F-1D18A9856A87
  last_name: Bhandari
  orcid: 0000-0003-0863-4481
- first_name: David H
  full_name: Vandael, David H
  id: 3AE48E0A-F248-11E8-B48F-1D18A9856A87
  last_name: Vandael
  orcid: 0000-0001-7577-1676
- first_name: Diego
  full_name: Fernández-Fernández, Diego
  last_name: Fernández-Fernández
- first_name: Thorsten
  full_name: Fritzius, Thorsten
  last_name: Fritzius
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
- first_name: Hüseyin C
  full_name: Önal, Hüseyin C
  id: 4659D740-F248-11E8-B48F-1D18A9856A87
  last_name: Önal
  orcid: 0000-0002-2771-2011
- first_name: Jacqueline-Claire
  full_name: Montanaro-Punzengruber, Jacqueline-Claire
  id: 3786AB44-F248-11E8-B48F-1D18A9856A87
  last_name: Montanaro-Punzengruber
- first_name: Martin
  full_name: Gassmann, Martin
  last_name: Gassmann
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Akos
  full_name: Kulik, Akos
  last_name: Kulik
- first_name: Bernhard
  full_name: Bettler, Bernhard
  last_name: Bettler
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
citation:
  ama: Bhandari P, Vandael DH, Fernández-Fernández D, et al. GABAB receptor auxiliary
    subunits modulate Cav2.3-mediated release from medial habenula terminals. <i>eLife</i>.
    2021;10. doi:<a href="https://doi.org/10.7554/ELIFE.68274">10.7554/ELIFE.68274</a>
  apa: Bhandari, P., Vandael, D. H., Fernández-Fernández, D., Fritzius, T., Kleindienst,
    D., Önal, C., … Koppensteiner, P. (2021). GABAB receptor auxiliary subunits modulate
    Cav2.3-mediated release from medial habenula terminals. <i>ELife</i>. eLife Sciences
    Publications. <a href="https://doi.org/10.7554/ELIFE.68274">https://doi.org/10.7554/ELIFE.68274</a>
  chicago: Bhandari, Pradeep, David H Vandael, Diego Fernández-Fernández, Thorsten
    Fritzius, David Kleindienst, Cihan Önal, Jacqueline-Claire Montanaro-Punzengruber,
    et al. “GABAB Receptor Auxiliary Subunits Modulate Cav2.3-Mediated Release from
    Medial Habenula Terminals.” <i>ELife</i>. eLife Sciences Publications, 2021. <a
    href="https://doi.org/10.7554/ELIFE.68274">https://doi.org/10.7554/ELIFE.68274</a>.
  ieee: P. Bhandari <i>et al.</i>, “GABAB receptor auxiliary subunits modulate Cav2.3-mediated
    release from medial habenula terminals,” <i>eLife</i>, vol. 10. eLife Sciences
    Publications, 2021.
  ista: Bhandari P, Vandael DH, Fernández-Fernández D, Fritzius T, Kleindienst D,
    Önal C, Montanaro-Punzengruber J-C, Gassmann M, Jonas PM, Kulik A, Bettler B,
    Shigemoto R, Koppensteiner P. 2021. GABAB receptor auxiliary subunits modulate
    Cav2.3-mediated release from medial habenula terminals. eLife. 10, e68274.
  mla: Bhandari, Pradeep, et al. “GABAB Receptor Auxiliary Subunits Modulate Cav2.3-Mediated
    Release from Medial Habenula Terminals.” <i>ELife</i>, vol. 10, e68274, eLife
    Sciences Publications, 2021, doi:<a href="https://doi.org/10.7554/ELIFE.68274">10.7554/ELIFE.68274</a>.
  short: P. Bhandari, D.H. Vandael, D. Fernández-Fernández, T. Fritzius, D. Kleindienst,
    C. Önal, J.-C. Montanaro-Punzengruber, M. Gassmann, P.M. Jonas, A. Kulik, B. Bettler,
    R. Shigemoto, P. Koppensteiner, ELife 10 (2021).
date_created: 2021-05-30T22:01:23Z
date_published: 2021-04-29T00:00:00Z
date_updated: 2026-06-18T22:30:39Z
day: '29'
ddc:
- '570'
department:
- _id: RySh
- _id: PeJo
doi: 10.7554/ELIFE.68274
ec_funded: 1
external_id:
  isi:
  - '000651761700001'
  pmid:
  - '33913808'
file:
- access_level: open_access
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  content_type: application/pdf
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  date_created: 2021-05-31T09:43:09Z
  date_updated: 2021-05-31T09:43:09Z
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  success: 1
file_date_updated: 2021-05-31T09:43:09Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glutamatergic synapse
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
related_material:
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    url: https://doi.org/10.1101/2020.04.16.045112
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    status: public
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    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: GABAB receptor auxiliary subunits modulate Cav2.3-mediated release from medial
  habenula terminals
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2021'
...
---
OA_place: publisher
_id: '9562'
abstract:
- lang: eng
  text: Left-right asymmetries can be considered a fundamental organizational principle
    of the vertebrate central nervous system. The hippocampal CA3-CA1 pyramidal cell
    synaptic connection shows an input-side dependent asymmetry where the hemispheric
    location of the presynaptic CA3 neuron determines the synaptic properties. Left-input
    synapses terminating on apical dendrites in stratum radiatum have a higher density
    of NMDA receptor subunit GluN2B, a lower density of AMPA receptor subunit GluA1
    and smaller areas with less often perforated PSDs. On the other hand, left-input
    synapses terminating on basal dendrites in stratum oriens have lower GluN2B densities
    than right-input ones. Apical and basal synapses further employ different signaling
    pathways involved in LTP. SDS-digested freeze-fracture replica labeling can visualize
    synaptic membrane proteins with high sensitivity and resolution, and has been
    used to reveal the asymmetry at the electron microscopic level. However, it requires
    time-consuming manual demarcation of the synaptic surface for quantitative measurements.
    To facilitate the analysis of replica labeling, I first developed a software named
    Darea, which utilizes deep-learning to automatize this demarcation. With Darea
    I characterized the synaptic distribution of NMDA and AMPA receptors as well as
    the voltage-gated Ca2+ channels in CA1 stratum radiatum and oriens. Second, I
    explored the role of GluN2B and its carboxy-terminus in the establishment of input-side
    dependent hippocampal asymmetry. In conditional knock-out mice lacking GluN2B
    expression in CA1 and GluN2B-2A swap mice, where GluN2B carboxy-terminus was exchanged
    to that of GluN2A, no significant asymmetries of GluN2B, GluA1 and PSD area were
    detected. We further discovered a previously unknown functional asymmetry of GluN2A,
    which was also lost in the swap mouse. These results demonstrate that GluN2B carboxy-terminus
    plays a critical role in normal formation of input-side dependent asymmetry.
acknowledged_ssus:
- _id: EM-Fac
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
citation:
  ama: 'Kleindienst D. 2B or not 2B: Hippocampal asymmetries mediated by NMDA receptor
    subunit GluN2B C-terminus and high-throughput image analysis by Deep-Learning.
    2021. doi:<a href="https://doi.org/10.15479/at:ista:9562">10.15479/at:ista:9562</a>'
  apa: 'Kleindienst, D. (2021). <i>2B or not 2B: Hippocampal asymmetries mediated
    by NMDA receptor subunit GluN2B C-terminus and high-throughput image analysis
    by Deep-Learning</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:9562">https://doi.org/10.15479/at:ista:9562</a>'
  chicago: 'Kleindienst, David. “2B or Not 2B: Hippocampal Asymmetries Mediated by
    NMDA Receptor Subunit GluN2B C-Terminus and High-Throughput Image Analysis by
    Deep-Learning.” Institute of Science and Technology Austria, 2021. <a href="https://doi.org/10.15479/at:ista:9562">https://doi.org/10.15479/at:ista:9562</a>.'
  ieee: 'D. Kleindienst, “2B or not 2B: Hippocampal asymmetries mediated by NMDA receptor
    subunit GluN2B C-terminus and high-throughput image analysis by Deep-Learning,”
    Institute of Science and Technology Austria, 2021.'
  ista: 'Kleindienst D. 2021. 2B or not 2B: Hippocampal asymmetries mediated by NMDA
    receptor subunit GluN2B C-terminus and high-throughput image analysis by Deep-Learning.
    Institute of Science and Technology Austria.'
  mla: 'Kleindienst, David. <i>2B or Not 2B: Hippocampal Asymmetries Mediated by NMDA
    Receptor Subunit GluN2B C-Terminus and High-Throughput Image Analysis by Deep-Learning</i>.
    Institute of Science and Technology Austria, 2021, doi:<a href="https://doi.org/10.15479/at:ista:9562">10.15479/at:ista:9562</a>.'
  short: 'D. Kleindienst, 2B or Not 2B: Hippocampal Asymmetries Mediated by NMDA Receptor
    Subunit GluN2B C-Terminus and High-Throughput Image Analysis by Deep-Learning,
    Institute of Science and Technology Austria, 2021.'
corr_author: '1'
date_created: 2021-06-17T14:10:47Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2026-04-08T07:12:31Z
day: '01'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: RySh
doi: 10.15479/at:ista:9562
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language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '124'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
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  - id: '9756'
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  - id: '9437'
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  - id: '612'
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supervisor:
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
title: '2B or not 2B: Hippocampal asymmetries mediated by NMDA receptor subunit GluN2B
  C-terminus and high-throughput image analysis by Deep-Learning'
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2021'
...
---
_id: '9756'
abstract:
- lang: eng
  text: High-resolution visualization and quantification of membrane proteins contribute
    to the understanding of their functions and the roles they play in physiological
    and pathological conditions. Sodium dodecyl sulfate-digested freeze-fracture replica
    labeling (SDS-FRL) is a powerful electron microscopy method to study quantitatively
    the two-dimensional distribution of transmembrane proteins and their tightly associated
    proteins. During treatment with SDS, intracellular organelles and proteins not
    anchored to the replica are dissolved, whereas integral membrane proteins captured
    and stabilized by carbon/platinum deposition remain on the replica. Their intra-
    and extracellular domains become exposed on the surface of the replica, facilitating
    the accessibility of antibodies and, therefore, providing higher labeling efficiency
    than those obtained with other immunoelectron microscopy techniques. In this chapter,
    we describe the protocols of SDS-FRL adapted for mammalian brain samples, and
    optimization of the SDS treatment to increase the labeling efficiency for quantification
    of Cav2.1, the alpha subunit of P/Q-type voltage-dependent calcium channels utilizing
    deep learning algorithms.
acknowledgement: This work was supported by the European Union (European Research
  Council Advanced grant no. 694539 and Human Brain Project Ref. 720270 to R. S.)
  and the Austrian Academy of Sciences (DOC fellowship to D.K.).
alternative_title:
- Neuromethods
article_processing_charge: No
author:
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
- first_name: Harumi
  full_name: Harada, Harumi
  id: 2E55CDF2-F248-11E8-B48F-1D18A9856A87
  last_name: Harada
  orcid: 0000-0001-7429-7896
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: 'Kaufmann W, Kleindienst D, Harada H, Shigemoto R. High-Resolution localization
    and quantitation of membrane proteins by SDS-digested freeze-fracture replica
    labeling (SDS-FRL). In: <i> Receptor and Ion Channel Detection in the Brain</i>.
    Vol 169. Neuromethods. New York: Humana; 2021:267-283. doi:<a href="https://doi.org/10.1007/978-1-0716-1522-5_19">10.1007/978-1-0716-1522-5_19</a>'
  apa: 'Kaufmann, W., Kleindienst, D., Harada, H., &#38; Shigemoto, R. (2021). High-Resolution
    localization and quantitation of membrane proteins by SDS-digested freeze-fracture
    replica labeling (SDS-FRL). In <i> Receptor and Ion Channel Detection in the Brain</i>
    (Vol. 169, pp. 267–283). New York: Humana. <a href="https://doi.org/10.1007/978-1-0716-1522-5_19">https://doi.org/10.1007/978-1-0716-1522-5_19</a>'
  chicago: 'Kaufmann, Walter, David Kleindienst, Harumi Harada, and Ryuichi Shigemoto.
    “High-Resolution Localization and Quantitation of Membrane Proteins by SDS-Digested
    Freeze-Fracture Replica Labeling (SDS-FRL).” In <i> Receptor and Ion Channel Detection
    in the Brain</i>, 169:267–83. Neuromethods. New York: Humana, 2021. <a href="https://doi.org/10.1007/978-1-0716-1522-5_19">https://doi.org/10.1007/978-1-0716-1522-5_19</a>.'
  ieee: 'W. Kaufmann, D. Kleindienst, H. Harada, and R. Shigemoto, “High-Resolution
    localization and quantitation of membrane proteins by SDS-digested freeze-fracture
    replica labeling (SDS-FRL),” in <i> Receptor and Ion Channel Detection in the
    Brain</i>, vol. 169, New York: Humana, 2021, pp. 267–283.'
  ista: 'Kaufmann W, Kleindienst D, Harada H, Shigemoto R. 2021.High-Resolution localization
    and quantitation of membrane proteins by SDS-digested freeze-fracture replica
    labeling (SDS-FRL). In:  Receptor and Ion Channel Detection in the Brain. Neuromethods,
    vol. 169, 267–283.'
  mla: Kaufmann, Walter, et al. “High-Resolution Localization and Quantitation of
    Membrane Proteins by SDS-Digested Freeze-Fracture Replica Labeling (SDS-FRL).”
    <i> Receptor and Ion Channel Detection in the Brain</i>, vol. 169, Humana, 2021,
    pp. 267–83, doi:<a href="https://doi.org/10.1007/978-1-0716-1522-5_19">10.1007/978-1-0716-1522-5_19</a>.
  short: W. Kaufmann, D. Kleindienst, H. Harada, R. Shigemoto, in:,  Receptor and
    Ion Channel Detection in the Brain, Humana, New York, 2021, pp. 267–283.
corr_author: '1'
date_created: 2021-07-30T09:34:56Z
date_published: 2021-07-27T00:00:00Z
date_updated: 2026-06-18T22:30:39Z
day: '27'
ddc:
- '573'
department:
- _id: RySh
- _id: EM-Fac
doi: 10.1007/978-1-0716-1522-5_19
ec_funded: 1
has_accepted_license: '1'
intvolume: '       169'
keyword:
- 'Freeze-fracture replica: Deep learning'
- Immunogold labeling
- Integral membrane protein
- Electron microscopy
language:
- iso: eng
month: '07'
oa_version: None
page: 267-283
place: New York
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 25CBA828-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '720270'
  name: Human Brain Project Specific Grant Agreement 1
publication: ' Receptor and Ion Channel Detection in the Brain'
publication_identifier:
  eisbn:
  - '9781071615225'
  isbn:
  - '9781071615218'
publication_status: published
publisher: Humana
quality_controlled: '1'
related_material:
  record:
  - id: '9562'
    relation: dissertation_contains
    status: public
scopus_import: '1'
series_title: Neuromethods
status: public
title: High-Resolution localization and quantitation of membrane proteins by SDS-digested
  freeze-fracture replica labeling (SDS-FRL)
type: book_chapter
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 169
year: '2021'
...
---
_id: '7665'
abstract:
- lang: eng
  text: Acute brain slice preparation is a powerful experimental model for investigating
    the characteristics of synaptic function in the brain. Although brain tissue is
    usually cut at ice-cold temperature (CT) to facilitate slicing and avoid neuronal
    damage, exposure to CT causes molecular and architectural changes of synapses.
    To address these issues, we investigated ultrastructural and electrophysiological
    features of synapses in mouse acute cerebellar slices prepared at ice-cold and
    physiological temperature (PT). In the slices prepared at CT, we found significant
    spine loss and reconstruction, synaptic vesicle rearrangement and decrease in
    synaptic proteins, all of which were not detected in slices prepared at PT. Consistent
    with these structural findings, slices prepared at PT showed higher release probability.
    Furthermore, preparation at PT allows electrophysiological recording immediately
    after slicing resulting in higher detectability of long-term depression (LTD)
    after motor learning compared with that at CT. These results indicate substantial
    advantages of the slice preparation at PT for investigating synaptic functions
    in different physiological conditions.
article_number: '63'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Philipp
  full_name: Velicky, Philipp
  id: 39BDC62C-F248-11E8-B48F-1D18A9856A87
  last_name: Velicky
  orcid: 0000-0002-2340-7431
- first_name: Elena
  full_name: Hollergschwandtner, Elena
  id: 3C054040-F248-11E8-B48F-1D18A9856A87
  last_name: Hollergschwandtner
- first_name: Makoto
  full_name: Itakura, Makoto
  last_name: Itakura
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Eguchi K, Velicky P, Saeckl E, et al. Advantages of acute brain slices prepared
    at physiological temperature in the characterization of synaptic functions. <i>Frontiers
    in Cellular Neuroscience</i>. 2020;14. doi:<a href="https://doi.org/10.3389/fncel.2020.00063">10.3389/fncel.2020.00063</a>
  apa: Eguchi, K., Velicky, P., Saeckl, E., Itakura, M., Fukazawa, Y., Danzl, J. G.,
    &#38; Shigemoto, R. (2020). Advantages of acute brain slices prepared at physiological
    temperature in the characterization of synaptic functions. <i>Frontiers in Cellular
    Neuroscience</i>. Frontiers Media. <a href="https://doi.org/10.3389/fncel.2020.00063">https://doi.org/10.3389/fncel.2020.00063</a>
  chicago: Eguchi, Kohgaku, Philipp Velicky, Elena Saeckl, Makoto Itakura, Yugo Fukazawa,
    Johann G Danzl, and Ryuichi Shigemoto. “Advantages of Acute Brain Slices Prepared
    at Physiological Temperature in the Characterization of Synaptic Functions.” <i>Frontiers
    in Cellular Neuroscience</i>. Frontiers Media, 2020. <a href="https://doi.org/10.3389/fncel.2020.00063">https://doi.org/10.3389/fncel.2020.00063</a>.
  ieee: K. Eguchi <i>et al.</i>, “Advantages of acute brain slices prepared at physiological
    temperature in the characterization of synaptic functions,” <i>Frontiers in Cellular
    Neuroscience</i>, vol. 14. Frontiers Media, 2020.
  ista: Eguchi K, Velicky P, Saeckl E, Itakura M, Fukazawa Y, Danzl JG, Shigemoto
    R. 2020. Advantages of acute brain slices prepared at physiological temperature
    in the characterization of synaptic functions. Frontiers in Cellular Neuroscience.
    14, 63.
  mla: Eguchi, Kohgaku, et al. “Advantages of Acute Brain Slices Prepared at Physiological
    Temperature in the Characterization of Synaptic Functions.” <i>Frontiers in Cellular
    Neuroscience</i>, vol. 14, 63, Frontiers Media, 2020, doi:<a href="https://doi.org/10.3389/fncel.2020.00063">10.3389/fncel.2020.00063</a>.
  short: K. Eguchi, P. Velicky, E. Saeckl, M. Itakura, Y. Fukazawa, J.G. Danzl, R.
    Shigemoto, Frontiers in Cellular Neuroscience 14 (2020).
corr_author: '1'
date_created: 2020-04-19T22:00:55Z
date_published: 2020-03-19T00:00:00Z
date_updated: 2025-06-12T07:16:39Z
day: '19'
ddc:
- '570'
department:
- _id: JoDa
- _id: RySh
doi: 10.3389/fncel.2020.00063
ec_funded: 1
external_id:
  isi:
  - '000525582200001'
  pmid:
  - '32265664'
file:
- access_level: open_access
  checksum: 1c145123c6f8dc3e2e4bd5a66a1ad60e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T10:59:49Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7668'
  file_name: 2020_FrontiersCellularNeurosc_Eguchi.pdf
  file_size: 9227283
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2659CC84-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '793482'
  name: 'Ultrastructural analysis of phosphoinositides in nerve terminals: distribution,
    dynamics and physiological roles in synaptic transmission'
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 265CB4D0-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03600
  name: Optical control of synaptic function via adhesion molecules
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Frontiers in Cellular Neuroscience
publication_identifier:
  issn:
  - 1662-5102
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Advantages of acute brain slices prepared at physiological temperature in the
  characterization of synaptic functions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2020'
...
---
_id: '7908'
abstract:
- lang: eng
  text: Volatile anesthetics are widely used for surgery, but neuronal mechanisms
    of anesthesia remain unidentified. At the calyx of Held in brainstem slices from
    rats of either sex, isoflurane at clinical doses attenuated EPSCs by decreasing
    the release probability and the number of readily releasable vesicles. In presynaptic
    recordings of Ca2+ currents and exocytic capacitance changes, isoflurane attenuated
    exocytosis by inhibiting Ca2+ currents evoked by a short presynaptic depolarization,
    whereas it inhibited exocytosis evoked by a prolonged depolarization via directly
    blocking exocytic machinery downstream of Ca2+ influx. Since the length of presynaptic
    depolarization can simulate the frequency of synaptic inputs, isoflurane anesthesia
    is likely mediated by distinct dual mechanisms, depending on input frequencies.
    In simultaneous presynaptic and postsynaptic action potential recordings, isoflurane
    impaired the fidelity of repetitive spike transmission, more strongly at higher
    frequencies. Furthermore, in the cerebrum of adult mice, isoflurane inhibited
    monosynaptic corticocortical spike transmission, preferentially at a higher frequency.
    We conclude that dual presynaptic mechanisms operate for the anesthetic action
    of isoflurane, of which direct inhibition of exocytic machinery plays a low-pass
    filtering role in spike transmission at central excitatory synapses.
article_processing_charge: No
article_type: original
author:
- first_name: Han Ying
  full_name: Wang, Han Ying
  last_name: Wang
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Takayuki
  full_name: Yamashita, Takayuki
  last_name: Yamashita
- first_name: Tomoyuki
  full_name: Takahashi, Tomoyuki
  last_name: Takahashi
citation:
  ama: Wang HY, Eguchi K, Yamashita T, Takahashi T. Frequency-dependent block of excitatory
    neurotransmission by isoflurane via dual presynaptic mechanisms. <i>Journal of
    Neuroscience</i>. 2020;40(21):4103-4115. doi:<a href="https://doi.org/10.1523/JNEUROSCI.2946-19.2020">10.1523/JNEUROSCI.2946-19.2020</a>
  apa: Wang, H. Y., Eguchi, K., Yamashita, T., &#38; Takahashi, T. (2020). Frequency-dependent
    block of excitatory neurotransmission by isoflurane via dual presynaptic mechanisms.
    <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href="https://doi.org/10.1523/JNEUROSCI.2946-19.2020">https://doi.org/10.1523/JNEUROSCI.2946-19.2020</a>
  chicago: Wang, Han Ying, Kohgaku Eguchi, Takayuki Yamashita, and Tomoyuki Takahashi.
    “Frequency-Dependent Block of Excitatory Neurotransmission by Isoflurane via Dual
    Presynaptic Mechanisms.” <i>Journal of Neuroscience</i>. Society for Neuroscience,
    2020. <a href="https://doi.org/10.1523/JNEUROSCI.2946-19.2020">https://doi.org/10.1523/JNEUROSCI.2946-19.2020</a>.
  ieee: H. Y. Wang, K. Eguchi, T. Yamashita, and T. Takahashi, “Frequency-dependent
    block of excitatory neurotransmission by isoflurane via dual presynaptic mechanisms,”
    <i>Journal of Neuroscience</i>, vol. 40, no. 21. Society for Neuroscience, pp.
    4103–4115, 2020.
  ista: Wang HY, Eguchi K, Yamashita T, Takahashi T. 2020. Frequency-dependent block
    of excitatory neurotransmission by isoflurane via dual presynaptic mechanisms.
    Journal of Neuroscience. 40(21), 4103–4115.
  mla: Wang, Han Ying, et al. “Frequency-Dependent Block of Excitatory Neurotransmission
    by Isoflurane via Dual Presynaptic Mechanisms.” <i>Journal of Neuroscience</i>,
    vol. 40, no. 21, Society for Neuroscience, 2020, pp. 4103–15, doi:<a href="https://doi.org/10.1523/JNEUROSCI.2946-19.2020">10.1523/JNEUROSCI.2946-19.2020</a>.
  short: H.Y. Wang, K. Eguchi, T. Yamashita, T. Takahashi, Journal of Neuroscience
    40 (2020) 4103–4115.
date_created: 2020-05-31T22:00:48Z
date_published: 2020-05-20T00:00:00Z
date_updated: 2025-03-07T08:29:32Z
day: '20'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1523/JNEUROSCI.2946-19.2020
external_id:
  isi:
  - '000535694700004'
  pmid:
  - '32327530'
file:
- access_level: open_access
  checksum: 6571607ea9036154b67cc78e848a7f7d
  content_type: application/pdf
  creator: dernst
  date_created: 2020-06-02T09:12:16Z
  date_updated: 2020-07-14T12:48:05Z
  file_id: '7912'
  file_name: 2020_JourNeuroscience_Wang.pdf
  file_size: 3817360
  relation: main_file
file_date_updated: 2020-07-14T12:48:05Z
has_accepted_license: '1'
intvolume: '        40'
isi: 1
issue: '21'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 4103-4115
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  eissn:
  - 1529-2401
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
scopus_import: '1'
status: public
title: Frequency-dependent block of excitatory neurotransmission by isoflurane via
  dual presynaptic mechanisms
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 40
year: '2020'
...
---
_id: '7148'
abstract:
- lang: eng
  text: In the cerebellum, GluD2 is exclusively expressed in Purkinje cells, where
    it regulates synapse formation and regeneration, synaptic plasticity, and motor
    learning. Delayed cognitive development in humans with GluD2 gene mutations suggests
    extracerebellar functions of GluD2. However, extracerebellar expression of GluD2
    and its relationship with that of GluD1 are poorly understood. GluD2 mRNA and
    protein were widely detected, with relatively high levels observed in the olfactory
    glomerular layer, medial prefrontal cortex, cingulate cortex, retrosplenial granular
    cortex, olfactory tubercle, subiculum, striatum, lateral septum, anterodorsal
    thalamic nucleus, and arcuate hypothalamic nucleus. These regions were also enriched
    for GluD1, and many individual neurons coexpressed the two GluDs. In the retrosplenial
    granular cortex, GluD1 and GluD2 were selectively expressed at PSD‐95‐expressing
    glutamatergic synapses, and their coexpression on the same synapses was shown
    by SDS‐digested freeze‐fracture replica labeling. Biochemically, GluD1 and GluD2
    formed coimmunoprecipitable complex formation in HEK293T cells and in the cerebral
    cortex and hippocampus. We further estimated the relative protein amount by quantitative
    immunoblotting using GluA2/GluD2 and GluA2/GluD1 chimeric proteins as standards
    for titration of GluD1 and GluD2 antibodies. Intriguingly, the relative amount
    of GluD2 was almost comparable to that of GluD1 in the postsynaptic density fraction
    prepared from the cerebral cortex and hippocampus. In contrast, GluD2 was overwhelmingly
    predominant in the cerebellum. Thus, we have determined the relative extracerebellar
    expression of GluD1 and GluD2 at regional, neuronal, and synaptic levels. These
    data provide a molecular–anatomical basis for possible competitive and cooperative
    interactions of GluD family members at synapses in various brain regions.
acknowledgement: This study was supported by Grants-in-Aid for Scientific Research
  to K.K. (18K06813), Y.M. (17K08503, 17H0631319), and K.S. (16H04650) and a grant
  for Scientific Research on Innovative Areas to K.S (16H06276) from the Ministry
  of Education, Culture, Sports, Science and Technology of Japan (MEXT). We thank
  K. Akashi, I. Watanabe-Iida, Y. Suzuki, and H. Azechi for technical assistance and
  advice, and H. Uchida for valuable discussions. We thank E. Kushiya,I. Yabe, C.
  Ohori, Y. Mochizuki, Y. Ishikawa, and N. Ishimoto for technical assistance in generating
  GluD1-KO mice.
article_processing_charge: No
article_type: original
author:
- first_name: Chihiro
  full_name: Nakamoto, Chihiro
  last_name: Nakamoto
- first_name: Kohtarou
  full_name: Konno, Kohtarou
  last_name: Konno
- first_name: Taisuke
  full_name: Miyazaki, Taisuke
  last_name: Miyazaki
- first_name: Ena
  full_name: Nakatsukasa, Ena
  last_name: Nakatsukasa
- first_name: Rie
  full_name: Natsume, Rie
  last_name: Natsume
- first_name: Manabu
  full_name: Abe, Manabu
  last_name: Abe
- first_name: Meiko
  full_name: Kawamura, Meiko
  last_name: Kawamura
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Miwako
  full_name: Yamasaki, Miwako
  last_name: Yamasaki
- first_name: Kenji
  full_name: Sakimura, Kenji
  last_name: Sakimura
- first_name: Masahiko
  full_name: Watanabe, Masahiko
  last_name: Watanabe
citation:
  ama: Nakamoto C, Konno K, Miyazaki T, et al. Expression mapping, quantification,
    and complex formation of GluD1 and GluD2 glutamate receptors in adult mouse brain.
    <i>Journal of Comparative Neurology</i>. 2020;528(6):1003-1027. doi:<a href="https://doi.org/10.1002/cne.24792">10.1002/cne.24792</a>
  apa: Nakamoto, C., Konno, K., Miyazaki, T., Nakatsukasa, E., Natsume, R., Abe, M.,
    … Watanabe, M. (2020). Expression mapping, quantification, and complex formation
    of GluD1 and GluD2 glutamate receptors in adult mouse brain. <i>Journal of Comparative
    Neurology</i>. Wiley. <a href="https://doi.org/10.1002/cne.24792">https://doi.org/10.1002/cne.24792</a>
  chicago: Nakamoto, Chihiro, Kohtarou Konno, Taisuke Miyazaki, Ena Nakatsukasa, Rie
    Natsume, Manabu Abe, Meiko Kawamura, et al. “Expression Mapping, Quantification,
    and Complex Formation of GluD1 and GluD2 Glutamate Receptors in Adult Mouse Brain.”
    <i>Journal of Comparative Neurology</i>. Wiley, 2020. <a href="https://doi.org/10.1002/cne.24792">https://doi.org/10.1002/cne.24792</a>.
  ieee: C. Nakamoto <i>et al.</i>, “Expression mapping, quantification, and complex
    formation of GluD1 and GluD2 glutamate receptors in adult mouse brain,” <i>Journal
    of Comparative Neurology</i>, vol. 528, no. 6. Wiley, pp. 1003–1027, 2020.
  ista: Nakamoto C, Konno K, Miyazaki T, Nakatsukasa E, Natsume R, Abe M, Kawamura
    M, Fukazawa Y, Shigemoto R, Yamasaki M, Sakimura K, Watanabe M. 2020. Expression
    mapping, quantification, and complex formation of GluD1 and GluD2 glutamate receptors
    in adult mouse brain. Journal of Comparative Neurology. 528(6), 1003–1027.
  mla: Nakamoto, Chihiro, et al. “Expression Mapping, Quantification, and Complex
    Formation of GluD1 and GluD2 Glutamate Receptors in Adult Mouse Brain.” <i>Journal
    of Comparative Neurology</i>, vol. 528, no. 6, Wiley, 2020, pp. 1003–27, doi:<a
    href="https://doi.org/10.1002/cne.24792">10.1002/cne.24792</a>.
  short: C. Nakamoto, K. Konno, T. Miyazaki, E. Nakatsukasa, R. Natsume, M. Abe, M.
    Kawamura, Y. Fukazawa, R. Shigemoto, M. Yamasaki, K. Sakimura, M. Watanabe, Journal
    of Comparative Neurology 528 (2020) 1003–1027.
date_created: 2019-12-04T16:09:29Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2023-08-17T14:06:50Z
day: '01'
ddc:
- '571'
- '599'
department:
- _id: RySh
doi: 10.1002/cne.24792
external_id:
  isi:
  - '000496410200001'
  pmid:
  - '31625608'
has_accepted_license: '1'
intvolume: '       528'
isi: 1
issue: '6'
language:
- iso: eng
month: '04'
oa_version: None
page: 1003-1027
pmid: 1
publication: Journal of Comparative Neurology
publication_identifier:
  eissn:
  - 1096-9861
  issn:
  - 0021-9967
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Expression mapping, quantification, and complex formation of GluD1 and GluD2
  glutamate receptors in adult mouse brain
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 528
year: '2020'
...
---
_id: '7207'
abstract:
- lang: eng
  text: The hippocampus plays key roles in learning and memory and is a main target
    of Alzheimer's disease (AD), which causes progressive memory impairments. Despite
    numerous investigations about the processes required for the normal hippocampal
    functions, the neurotransmitter receptors involved in the synaptic deficits by
    which AD disables the hippocampus are not yet characterized. By combining histoblots,
    western blots, immunohistochemistry and high‐resolution immunoelectron microscopic
    methods for GABAB receptors, this study provides a quantitative description of
    the expression and the subcellular localization of GABAB1 in the hippocampus in
    a mouse model of AD at 1, 6 and 12 months of age. Western blots and histoblots
    showed that the total amount of protein and the laminar expression pattern of
    GABAB1 were similar in APP/PS1 mice and in age‐matched wild‐type mice. In contrast,
    immunoelectron microscopic techniques showed that the subcellular localization
    of GABAB1 subunit did not change significantly in APP/PS1 mice at 1 month of age,
    was significantly reduced in the stratum lacunosum‐moleculare of CA1 pyramidal
    cells at 6 months of age and significantly reduced at the membrane surface of
    CA1 pyramidal cells at 12 months of age. This reduction of plasma membrane GABAB1
    was paralleled by a significant increase of the subunit at the intracellular sites.
    We further observed a decrease of membrane‐targeted GABAB receptors in axon terminals
    contacting CA1 pyramidal cells. Our data demonstrate compartment‐ and age‐dependent
    reduction of plasma membrane‐targeted GABAB receptors in the CA1 region of the
    hippocampus, suggesting that this decrease might be enough to alter the GABAB‐mediated
    synaptic transmission taking place in AD.
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruíz, Rocío
  last_name: Alfaro-Ruíz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: De La Ossa, Luis
  last_name: De La Ossa
- first_name: José
  full_name: Martínez-Hernández, José
  last_name: Martínez-Hernández
- first_name: Alain
  full_name: Buisson, Alain
  last_name: Buisson
- first_name: Simon
  full_name: Früh, Simon
  last_name: Früh
- first_name: Bernhard
  full_name: Bettler, Bernhard
  last_name: Bettler
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Reduction in the neuronal
    surface of post and presynaptic GABA&#62;B&#60; receptors in the hippocampus in
    a mouse model of Alzheimer’s disease. <i>Brain Pathology</i>. 2020;30(3):554-575.
    doi:<a href="https://doi.org/10.1111/bpa.12802">10.1111/bpa.12802</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De
    La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Reduction in the neuronal
    surface of post and presynaptic GABA&#62;B&#60; receptors in the hippocampus in
    a mouse model of Alzheimer’s disease. <i>Brain Pathology</i>. Wiley. <a href="https://doi.org/10.1111/bpa.12802">https://doi.org/10.1111/bpa.12802</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther
    Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, et al.
    “Reduction in the Neuronal Surface of Post and Presynaptic GABA&#62;B&#60; Receptors
    in the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>Brain Pathology</i>.
    Wiley, 2020. <a href="https://doi.org/10.1111/bpa.12802">https://doi.org/10.1111/bpa.12802</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Reduction in the neuronal surface of post
    and presynaptic GABA&#62;B&#60; receptors in the hippocampus in a mouse model
    of Alzheimer’s disease,” <i>Brain Pathology</i>, vol. 30, no. 3. Wiley, pp. 554–575,
    2020.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa
    L, Martínez-Hernández J, Buisson A, Früh S, Bettler B, Shigemoto R, Fukazawa Y,
    Luján R. 2020. Reduction in the neuronal surface of post and presynaptic GABA&#62;B&#60;
    receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology.
    30(3), 554–575.
  mla: Martín-Belmonte, Alejandro, et al. “Reduction in the Neuronal Surface of Post
    and Presynaptic GABA&#62;B&#60; Receptors in the Hippocampus in a Mouse Model
    of Alzheimer’s Disease.” <i>Brain Pathology</i>, vol. 30, no. 3, Wiley, 2020,
    pp. 554–75, doi:<a href="https://doi.org/10.1111/bpa.12802">10.1111/bpa.12802</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De
    La Ossa, J. Martínez-Hernández, A. Buisson, S. Früh, B. Bettler, R. Shigemoto,
    Y. Fukazawa, R. Luján, Brain Pathology 30 (2020) 554–575.
date_created: 2019-12-22T23:00:43Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2025-07-10T11:54:22Z
day: '01'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1111/bpa.12802
ec_funded: 1
external_id:
  isi:
  - '000502270900001'
  pmid:
  - '31729777'
file:
- access_level: open_access
  checksum: 549cc1b18f638a21d17a939ba5563fa9
  content_type: application/pdf
  creator: dernst
  date_created: 2020-09-22T09:47:19Z
  date_updated: 2020-09-22T09:47:19Z
  file_id: '8554'
  file_name: 2020_BrainPathology_MartinBelmonte.pdf
  file_size: 4220935
  relation: main_file
  success: 1
file_date_updated: 2020-09-22T09:47:19Z
has_accepted_license: '1'
intvolume: '        30'
isi: 1
issue: '3'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 554-575
pmid: 1
project:
- _id: 25CBA828-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '720270'
  name: Human Brain Project Specific Grant Agreement 1
- _id: 26436750-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '785907'
  name: Human Brain Project Specific Grant Agreement 2
publication: Brain Pathology
publication_identifier:
  eissn:
  - 1750-3639
  issn:
  - 1015-6305
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reduction in the neuronal surface of post and presynaptic GABA>B< receptors
  in the hippocampus in a mouse model of Alzheimer's disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2020'
...
---
_id: '7664'
abstract:
- lang: eng
  text: Metabotropic γ-aminobutyric acid (GABAB) receptors contribute to the control
    of network activity and information processing in hippocampal circuits by regulating
    neuronal excitability and synaptic transmission. The dysfunction in the dentate
    gyrus (DG) has been implicated in Alzheimer´s disease (AD). Given the involvement
    of GABAB receptors in AD, to determine their subcellular localisation and possible
    alteration in granule cells of the DG in a mouse model of AD at 12 months of age,
    we used high-resolution immunoelectron microscopic analysis. Immunohistochemistry
    at the light microscopic level showed that the regional and cellular expression
    pattern of GABAB1 was similar in an AD model mouse expressing mutated human amyloid
    precursor protein and presenilin1 (APP/PS1) and in age-matched wild type mice.
    High-resolution immunoelectron microscopy revealed a distance-dependent gradient
    of immunolabelling for GABAB receptors, increasing from proximal to distal dendrites
    in both wild type and APP/PS1 mice. However, the overall density of GABAB receptors
    at the neuronal surface of these postsynaptic compartments of granule cells was
    significantly reduced in APP/PS1 mice. Parallel to this reduction in surface receptors,
    we found a significant increase in GABAB1 at cytoplasmic sites. GABAB receptors
    were also detected at presynaptic sites in the molecular layer of the DG. We also
    found a decrease in plasma membrane GABAB receptors in axon terminals contacting
    dendritic spines of granule cells, which was more pronounced in the outer than
    in the inner molecular layer. Altogether, our data showing post- and presynaptic
    reduction in surface GABAB receptors in the DG suggest the alteration of the GABAB-mediated
    modulation of excitability and synaptic transmission in granule cells, which may
    contribute to the cognitive dysfunctions in the APP/PS1 model of AD
article_number: '2459'
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruíz, Rocío
  last_name: Alfaro-Ruíz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: De La Ossa, Luis
  last_name: De La Ossa
- first_name: José
  full_name: Martínez-Hernández, José
  last_name: Martínez-Hernández
- first_name: Alain
  full_name: Buisson, Alain
  last_name: Buisson
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International journal of molecular sciences</i>. 2020;21(7). doi:<a
    href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De
    La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International Journal of Molecular Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther
    Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, Ryuichi
    Shigemoto, Yugo Fukazawa, and Rafael Luján. “Density of GABAB Receptors Is Reduced
    in Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.”
    <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Density of GABAB receptors is reduced in
    granule cells of the hippocampus in a mouse model of Alzheimer’s disease,” <i>International
    journal of molecular sciences</i>, vol. 21, no. 7. MDPI, 2020.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa
    L, Martínez-Hernández J, Buisson A, Shigemoto R, Fukazawa Y, Luján R. 2020. Density
    of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model
    of Alzheimer’s disease. International journal of molecular sciences. 21(7), 2459.
  mla: Martín-Belmonte, Alejandro, et al. “Density of GABAB Receptors Is Reduced in
    Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>International
    Journal of Molecular Sciences</i>, vol. 21, no. 7, 2459, MDPI, 2020, doi:<a href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De
    La Ossa, J. Martínez-Hernández, A. Buisson, R. Shigemoto, Y. Fukazawa, R. Luján,
    International Journal of Molecular Sciences 21 (2020).
date_created: 2020-04-19T22:00:55Z
date_published: 2020-04-02T00:00:00Z
date_updated: 2026-04-02T14:27:06Z
day: '02'
ddc:
- '570'
department:
- _id: RySh
doi: 10.3390/ijms21072459
external_id:
  isi:
  - '000535574200201'
  pmid:
  - '32252271'
file:
- access_level: open_access
  checksum: b9d2f1657d8c4a74b01a62b474d009b0
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T11:43:18Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7669'
  file_name: 2020_JournMolecSciences_Martin_Belmonte.pdf
  file_size: 2941197
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '7'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: International journal of molecular sciences
publication_identifier:
  eissn:
  - 1422-0067
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density of GABAB receptors is reduced in granule cells of the hippocampus in
  a mouse model of Alzheimer's disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 21
year: '2020'
...
