[{"keyword":["Publication analysis","Bibliography","Open Access"],"year":"2018","oa":1,"file_date_updated":"2020-07-14T12:47:05Z","doi":"10.15479/AT:ISTA:88","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"E-Lib"}],"file":[{"relation":"main_file","content_type":"application/zip","date_updated":"2020-07-14T12:47:05Z","access_level":"open_access","date_created":"2018-12-12T13:02:32Z","checksum":"a887246c2b41b98df90ccbc1d62b4487","file_size":741195,"file_name":"IST-2018-88-v1+1_Data_Check_T_F_Scopus_vs._FWF.zip","creator":"system","file_id":"5598"}],"day":"16","publisher":"Institute of Science and Technology Austria","month":"01","citation":{"chicago":"Villányi, Márton. “Data Check T&#38;F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:88\">https://doi.org/10.15479/AT:ISTA:88</a>.","short":"M. Villányi, (2018).","apa":"Villányi, M. (2018). Data Check T&#38;F Scopus vs. FWF. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:88\">https://doi.org/10.15479/AT:ISTA:88</a>","ista":"Villányi M. 2018. Data Check T&#38;F Scopus vs. FWF, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:88\">10.15479/AT:ISTA:88</a>.","mla":"Villányi, Márton. <i>Data Check T&#38;F Scopus vs. FWF</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:88\">10.15479/AT:ISTA:88</a>.","ama":"Villányi M. Data Check T&#38;F Scopus vs. FWF. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:88\">10.15479/AT:ISTA:88</a>","ieee":"M. Villányi, “Data Check T&#38;F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018."},"_id":"5576","status":"public","date_updated":"2026-06-18T18:35:06Z","date_published":"2018-01-16T00:00:00Z","date_created":"2018-12-12T12:31:37Z","type":"research_data","has_accepted_license":"1","related_material":{"record":[{"id":"278","relation":"part_of_dissertation","status":"public"}]},"abstract":[{"text":"Comparison of Scopus' and FWF's data on Austrian publication output at T&F.","lang":"ger"}],"title":"Data Check T&F Scopus vs. FWF","datarep_id":"88","oa_version":"Submitted Version","license":"https://creativecommons.org/publicdomain/zero/1.0/","author":[{"full_name":"Villányi, Márton","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","first_name":"Márton","last_name":"Villányi","orcid":"0000-0001-8126-0426"}],"article_processing_charge":"No","ddc":["020"],"tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode"}},{"article_processing_charge":"No","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode"},"ddc":["020"],"abstract":[{"text":"Comparison of Scopus' and FWF's data on Austrian publication output at RSC. ","lang":"ger"}],"has_accepted_license":"1","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"278"}]},"type":"research_data","date_published":"2018-01-16T00:00:00Z","date_created":"2018-12-12T12:31:37Z","author":[{"orcid":"0000-0001-8126-0426","first_name":"Márton","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","last_name":"Villányi","full_name":"Villányi, Márton"}],"oa_version":"Submitted Version","datarep_id":"87","title":"Data Check RSC Scopus vs. FWF","day":"16","file":[{"date_updated":"2020-07-14T12:47:05Z","access_level":"open_access","content_type":"application/zip","relation":"main_file","file_id":"5610","creator":"system","file_name":"IST-2018-87-v1+1_Data_Check_RSC_Scopus_vs._FWF.zip","file_size":277078,"checksum":"563cc5266c0bac354007873c92be777b","date_created":"2018-12-12T13:02:44Z"}],"department":[{"_id":"E-Lib"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.15479/AT:ISTA:87","status":"public","_id":"5575","date_updated":"2026-06-18T18:35:06Z","citation":{"ieee":"M. Villányi, “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018.","mla":"Villányi, Márton. <i>Data Check RSC Scopus vs. FWF</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:87\">10.15479/AT:ISTA:87</a>.","ama":"Villányi M. Data Check RSC Scopus vs. FWF. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:87\">10.15479/AT:ISTA:87</a>","ista":"Villányi M. 2018. Data Check RSC Scopus vs. FWF, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:87\">10.15479/AT:ISTA:87</a>.","short":"M. Villányi, (2018).","apa":"Villányi, M. (2018). Data Check RSC Scopus vs. FWF. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:87\">https://doi.org/10.15479/AT:ISTA:87</a>","chicago":"Villányi, Márton. “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:87\">https://doi.org/10.15479/AT:ISTA:87</a>."},"month":"01","publisher":"Institute of Science and Technology Austria","oa":1,"file_date_updated":"2020-07-14T12:47:05Z","year":"2018","keyword":["Publication analysis","Bibliography","Open Access"]},{"publication_status":"published","status":"public","doi":"10.1016/j.devcel.2018.04.002","acknowledged_ssus":[{"_id":"SSU"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"DaSi"},{"_id":"CaHe"},{"_id":"Bio"},{"_id":"EM-Fac"},{"_id":"MiSi"}],"project":[{"name":"The role of Drosophila TNF alpha in immune cell invasion","_id":"253B6E48-B435-11E9-9278-68D0E5697425","grant_number":"P29638","call_identifier":"FWF"},{"_id":"2536F660-B435-11E9-9278-68D0E5697425","grant_number":"334077","call_identifier":"FP7","name":"Investigating the role of transporters in invasive migration through junctions"}],"day":"07","issue":"3","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.devcel.2018.04.002"}],"oa":1,"scopus_import":"1","external_id":{"isi":["000432461400009"],"pmid":["29738712"]},"intvolume":"        45","pmid":1,"oa_version":"Published Version","volume":45,"date_created":"2018-12-11T11:45:44Z","article_type":"original","related_material":{"link":[{"relation":"press_release","description":"News on IST Homepage","url":"https://ist.ac.at/en/news/cells-change-tension-to-make-tissue-barriers-easier-to-get-through/"}]},"abstract":[{"lang":"eng","text":"Migrating cells penetrate tissue barriers during development, inflammatory responses, and tumor metastasis. We study if migration in vivo in such three-dimensionally confined environments requires changes in the mechanical properties of the surrounding cells using embryonic Drosophila melanogaster hemocytes, also called macrophages, as a model. We find that macrophage invasion into the germband through transient separation of the apposing ectoderm and mesoderm requires cell deformations and reductions in apical tension in the ectoderm. Interestingly, the genetic pathway governing these mechanical shifts acts downstream of the only known tumor necrosis factor superfamily member in Drosophila, Eiger, and its receptor, Grindelwald. Eiger-Grindelwald signaling reduces levels of active Myosin in the germband ectodermal cortex through the localization of a Crumbs complex component, Patj (Pals-1-associated tight junction protein). We therefore elucidate a distinct molecular pathway that controls tissue tension and demonstrate the importance of such regulation for invasive migration in vivo."}],"corr_author":"1","publisher":"Elsevier","language":[{"iso":"eng"}],"month":"05","date_updated":"2026-06-18T18:37:46Z","_id":"308","page":"331 - 346","citation":{"chicago":"Ratheesh, Aparna, Julia Bicher, Michael Smutny, Jana Veselá, Ekaterina Papusheva, Gabriel Krens, Walter Kaufmann, Attila György, Alessandra M Casano, and Daria E Siekhaus. “Drosophila TNF Modulates Tissue Tension in the Embryo to Facilitate Macrophage Invasive Migration.” <i>Developmental Cell</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.devcel.2018.04.002\">https://doi.org/10.1016/j.devcel.2018.04.002</a>.","ista":"Ratheesh A, Bicher J, Smutny M, Veselá J, Papusheva E, Krens G, Kaufmann W, György A, Casano AM, Siekhaus DE. 2018. Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration. Developmental Cell. 45(3), 331–346.","apa":"Ratheesh, A., Bicher, J., Smutny, M., Veselá, J., Papusheva, E., Krens, G., … Siekhaus, D. E. (2018). Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2018.04.002\">https://doi.org/10.1016/j.devcel.2018.04.002</a>","short":"A. Ratheesh, J. Bicher, M. Smutny, J. Veselá, E. Papusheva, G. Krens, W. Kaufmann, A. György, A.M. Casano, D.E. Siekhaus, Developmental Cell 45 (2018) 331–346.","ieee":"A. Ratheesh <i>et al.</i>, “Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration,” <i>Developmental Cell</i>, vol. 45, no. 3. Elsevier, pp. 331–346, 2018.","ama":"Ratheesh A, Bicher J, Smutny M, et al. Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration. <i>Developmental Cell</i>. 2018;45(3):331-346. doi:<a href=\"https://doi.org/10.1016/j.devcel.2018.04.002\">10.1016/j.devcel.2018.04.002</a>","mla":"Ratheesh, Aparna, et al. “Drosophila TNF Modulates Tissue Tension in the Embryo to Facilitate Macrophage Invasive Migration.” <i>Developmental Cell</i>, vol. 45, no. 3, Elsevier, 2018, pp. 331–46, doi:<a href=\"https://doi.org/10.1016/j.devcel.2018.04.002\">10.1016/j.devcel.2018.04.002</a>."},"year":"2018","publication":"Developmental Cell","ddc":["570"],"article_processing_charge":"No","quality_controlled":"1","isi":1,"ec_funded":1,"title":"Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage invasive migration","author":[{"id":"2F064CFE-F248-11E8-B48F-1D18A9856A87","first_name":"Aparna","last_name":"Ratheesh","full_name":"Ratheesh, Aparna","orcid":"0000-0001-7190-0776"},{"last_name":"Biebl","id":"3CCBB46E-F248-11E8-B48F-1D18A9856A87","first_name":"Julia","full_name":"Biebl, Julia"},{"full_name":"Smutny, Michael","first_name":"Michael","last_name":"Smutny"},{"full_name":"Veselá, Jana","first_name":"Jana","id":"433253EE-F248-11E8-B48F-1D18A9856A87","last_name":"Veselá"},{"full_name":"Papusheva, Ekaterina","last_name":"Papusheva","id":"41DB591E-F248-11E8-B48F-1D18A9856A87","first_name":"Ekaterina"},{"full_name":"Krens, Gabriel","last_name":"Krens","id":"2B819732-F248-11E8-B48F-1D18A9856A87","first_name":"Gabriel","orcid":"0000-0003-4761-5996"},{"orcid":"0000-0001-9735-5315","full_name":"Kaufmann, Walter","last_name":"Kaufmann","id":"3F99E422-F248-11E8-B48F-1D18A9856A87","first_name":"Walter"},{"orcid":"0000-0002-1819-198X","full_name":"György, Attila","first_name":"Attila","id":"3BCEDBE0-F248-11E8-B48F-1D18A9856A87","last_name":"György"},{"orcid":"0000-0002-6009-6804","full_name":"Casano, Alessandra M","first_name":"Alessandra M","id":"3DBA3F4E-F248-11E8-B48F-1D18A9856A87","last_name":"Casano"},{"last_name":"Siekhaus","first_name":"Daria E","id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","full_name":"Siekhaus, Daria E","orcid":"0000-0001-8323-8353"}],"date_published":"2018-05-07T00:00:00Z","type":"journal_article"},{"article_processing_charge":"No","quality_controlled":"1","publication_identifier":{"eissn":["2331-8325"]},"publication":"Bio-protocol","ddc":["576","581"],"date_published":"2018-01-05T00:00:00Z","type":"journal_article","has_accepted_license":"1","publist_id":"7381","ec_funded":1,"author":[{"full_name":"Li, Lanxin","first_name":"Lanxin","id":"367EF8FA-F248-11E8-B48F-1D18A9856A87","last_name":"Li","orcid":"0000-0002-5607-272X"},{"orcid":"0000-0003-4761-5996","full_name":"Krens, Gabriel","last_name":"Krens","first_name":"Gabriel","id":"2B819732-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Fendrych","first_name":"Matyas","id":"43905548-F248-11E8-B48F-1D18A9856A87","full_name":"Fendrych, Matyas","orcid":"0000-0002-9767-8699"},{"orcid":"0000-0002-8302-7596","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí","full_name":"Friml, Jirí"}],"title":"Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls","file":[{"file_name":"IST-2018-970-v1+1_2018_Lanxin_Real-time_analysis.pdf","checksum":"6644ba698206eda32b0abf09128e63e3","file_size":11352389,"date_created":"2018-12-12T10:17:43Z","file_id":"5299","creator":"system","content_type":"application/pdf","relation":"main_file","access_level":"open_access","date_updated":"2020-07-14T12:46:29Z"}],"language":[{"iso":"eng"}],"corr_author":"1","publisher":"Bio-protocol","date_updated":"2026-06-18T22:31:03Z","_id":"442","citation":{"chicago":"Li, Lanxin, Gabriel Krens, Matyas Fendrych, and Jiří Friml. “Real-Time Analysis of Auxin Response, Cell Wall PH and Elongation in Arabidopsis Thaliana Hypocotyls.” <i>Bio-Protocol</i>. Bio-protocol, 2018. <a href=\"https://doi.org/10.21769/BioProtoc.2685\">https://doi.org/10.21769/BioProtoc.2685</a>.","short":"L. Li, G. Krens, M. Fendrych, J. Friml, Bio-Protocol 8 (2018).","apa":"Li, L., Krens, G., Fendrych, M., &#38; Friml, J. (2018). Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls. <i>Bio-Protocol</i>. Bio-protocol. <a href=\"https://doi.org/10.21769/BioProtoc.2685\">https://doi.org/10.21769/BioProtoc.2685</a>","ista":"Li L, Krens G, Fendrych M, Friml J. 2018. Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls. Bio-protocol. 8(1).","ama":"Li L, Krens G, Fendrych M, Friml J. Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls. <i>Bio-protocol</i>. 2018;8(1). doi:<a href=\"https://doi.org/10.21769/BioProtoc.2685\">10.21769/BioProtoc.2685</a>","mla":"Li, Lanxin, et al. “Real-Time Analysis of Auxin Response, Cell Wall PH and Elongation in Arabidopsis Thaliana Hypocotyls.” <i>Bio-Protocol</i>, vol. 8, no. 1, Bio-protocol, 2018, doi:<a href=\"https://doi.org/10.21769/BioProtoc.2685\">10.21769/BioProtoc.2685</a>.","ieee":"L. Li, G. Krens, M. Fendrych, and J. Friml, “Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls,” <i>Bio-protocol</i>, vol. 8, no. 1. Bio-protocol, 2018."},"month":"01","year":"2018","acknowledgement":"This protocol was adapted from Fendrych et al., 2016. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385, and Austrian Science Fund (FWF) [M 2128-B21]. ","intvolume":"         8","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_type":"original","date_created":"2018-12-11T11:46:30Z","volume":8,"abstract":[{"text":"The rapid auxin-triggered growth of the Arabidopsis hypocotyls involves the nuclear TIR1/AFB-Aux/IAA signaling and is accompanied by acidification of the apoplast and cell walls (Fendrych et al., 2016). Here, we describe in detail the method for analysis of the elongation and the TIR1/AFB-Aux/IAA-dependent auxin response in hypocotyl segments as well as the determination of relative values of the cell wall pH.","lang":"eng"}],"related_material":{"record":[{"relation":"dissertation_contains","id":"10083","status":"public"}]},"oa_version":"Published Version","license":"https://creativecommons.org/licenses/by/4.0/","department":[{"_id":"JiFr"},{"_id":"Bio"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.21769/BioProtoc.2685","project":[{"name":"International IST Doctoral Program","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385","call_identifier":"H2020"}],"day":"05","publication_status":"published","status":"public","pubrep_id":"970","oa":1,"file_date_updated":"2020-07-14T12:46:29Z","issue":"1"},{"oa":1,"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pubmed/29777221"}],"issue":"6","project":[{"_id":"25FE9508-B435-11E9-9278-68D0E5697425","grant_number":"724373","call_identifier":"H2020","name":"Cellular Navigation Along Spatial Gradients"},{"grant_number":"747687","_id":"260AA4E2-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells"},{"grant_number":"ALTF 1396-2014","_id":"25A48D24-B435-11E9-9278-68D0E5697425","name":"Molecular and system level view of immune cell migration"},{"_id":"25A603A2-B435-11E9-9278-68D0E5697425","grant_number":"281556","call_identifier":"FP7","name":"Cytoskeletal force generation and force transduction of migrating leukocytes"}],"day":"18","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"MiSi"},{"_id":"Bio"}],"doi":"10.1038/s41590-018-0109-z","acknowledged_ssus":[{"_id":"SSU"}],"status":"public","publication_status":"published","abstract":[{"text":"Although much is known about the physiological framework of T cell motility, and numerous rate-limiting molecules have been identified through loss-of-function approaches, an integrated functional concept of T cell motility is lacking. Here, we used in vivo precision morphometry together with analysis of cytoskeletal dynamics in vitro to deconstruct the basic mechanisms of T cell migration within lymphatic organs. We show that the contributions of the integrin LFA-1 and the chemokine receptor CCR7 are complementary rather than positioned in a linear pathway, as they are during leukocyte extravasation from the blood vasculature. Our data demonstrate that CCR7 controls cortical actin flows, whereas integrins mediate substrate friction that is sufficient to drive locomotion in the absence of considerable surface adhesions and plasma membrane flux.","lang":"eng"}],"related_material":{"record":[{"relation":"dissertation_contains","id":"6891","status":"public"}]},"volume":19,"date_created":"2018-12-11T11:44:10Z","oa_version":"Published Version","pmid":1,"intvolume":"        19","external_id":{"pmid":["29777221"],"isi":["000433041500026"]},"scopus_import":"1","year":"2018","acknowledgement":"This work was funded by grants from the European Research Council (ERC StG 281556 and CoG 724373) and the Austrian Science Foundation (FWF) to M.S. and by Swiss National Foundation (SNF) project grants 31003A_135649, 31003A_153457 and CR23I3_156234 to J.V.S. F.G. received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 747687, and J.R. was funded by an EMBO long-term fellowship (ALTF 1396-2014).","_id":"15","page":"606 - 616","citation":{"ieee":"M. Hons <i>et al.</i>, “Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells,” <i>Nature Immunology</i>, vol. 19, no. 6. Nature Publishing Group, pp. 606–616, 2018.","mla":"Hons, Miroslav, et al. “Chemokines and Integrins Independently Tune Actin Flow and Substrate Friction during Intranodal Migration of T Cells.” <i>Nature Immunology</i>, vol. 19, no. 6, Nature Publishing Group, 2018, pp. 606–16, doi:<a href=\"https://doi.org/10.1038/s41590-018-0109-z\">10.1038/s41590-018-0109-z</a>.","ama":"Hons M, Kopf A, Hauschild R, et al. Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells. <i>Nature Immunology</i>. 2018;19(6):606-616. doi:<a href=\"https://doi.org/10.1038/s41590-018-0109-z\">10.1038/s41590-018-0109-z</a>","ista":"Hons M, Kopf A, Hauschild R, Leithner AF, Gärtner FR, Abe J, Renkawitz J, Stein J, Sixt MK. 2018. Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells. Nature Immunology. 19(6), 606–616.","apa":"Hons, M., Kopf, A., Hauschild, R., Leithner, A. F., Gärtner, F. R., Abe, J., … Sixt, M. K. (2018). Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells. <i>Nature Immunology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41590-018-0109-z\">https://doi.org/10.1038/s41590-018-0109-z</a>","short":"M. Hons, A. Kopf, R. Hauschild, A.F. Leithner, F.R. Gärtner, J. Abe, J. Renkawitz, J. Stein, M.K. Sixt, Nature Immunology 19 (2018) 606–616.","chicago":"Hons, Miroslav, Aglaja Kopf, Robert Hauschild, Alexander F Leithner, Florian R Gärtner, Jun Abe, Jörg Renkawitz, Jens Stein, and Michael K Sixt. “Chemokines and Integrins Independently Tune Actin Flow and Substrate Friction during Intranodal Migration of T Cells.” <i>Nature Immunology</i>. Nature Publishing Group, 2018. <a href=\"https://doi.org/10.1038/s41590-018-0109-z\">https://doi.org/10.1038/s41590-018-0109-z</a>."},"date_updated":"2026-06-18T22:31:13Z","month":"05","language":[{"iso":"eng"}],"publisher":"Nature Publishing Group","type":"journal_article","date_published":"2018-05-18T00:00:00Z","author":[{"full_name":"Hons, Miroslav","last_name":"Hons","id":"4167FE56-F248-11E8-B48F-1D18A9856A87","first_name":"Miroslav","orcid":"0000-0002-6625-3348"},{"full_name":"Kopf, Aglaja","last_name":"Kopf","id":"31DAC7B6-F248-11E8-B48F-1D18A9856A87","first_name":"Aglaja","orcid":"0000-0002-2187-6656"},{"full_name":"Hauschild, Robert","last_name":"Hauschild","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","orcid":"0000-0001-9843-3522"},{"orcid":"0000-0002-1073-744X","full_name":"Leithner, Alexander F","last_name":"Leithner","id":"3B1B77E4-F248-11E8-B48F-1D18A9856A87","first_name":"Alexander F"},{"full_name":"Gärtner, Florian R","last_name":"Gärtner","first_name":"Florian R","id":"397A88EE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6120-3723"},{"first_name":"Jun","last_name":"Abe","full_name":"Abe, Jun"},{"full_name":"Renkawitz, Jörg","last_name":"Renkawitz","id":"3F0587C8-F248-11E8-B48F-1D18A9856A87","first_name":"Jörg","orcid":"0000-0003-2856-3369"},{"last_name":"Stein","first_name":"Jens","full_name":"Stein, Jens"},{"orcid":"0000-0002-6620-9179","last_name":"Sixt","first_name":"Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","full_name":"Sixt, Michael K"}],"title":"Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells","ec_funded":1,"publist_id":"8040","isi":1,"quality_controlled":"1","article_processing_charge":"No","ddc":["570"],"publication":"Nature Immunology"},{"publication":"2017 IEEE International Conference on Computer Vision (ICCV)","publication_identifier":{"eissn":["9781538610329"]},"quality_controlled":"1","article_processing_charge":"No","title":"Deep functional maps: Structured prediction for dense shape correspondence","author":[{"full_name":"Litany, Or","first_name":"Or","last_name":"Litany"},{"full_name":"Remez, Tal","last_name":"Remez","first_name":"Tal"},{"last_name":"Rodola","first_name":"Emanuele","full_name":"Rodola, Emanuele"},{"last_name":"Bronstein","first_name":"Alexander","full_name":"Bronstein, Alexander"},{"full_name":"Bronstein, Michael","first_name":"Michael","last_name":"Bronstein"}],"arxiv":1,"type":"conference","date_published":"2017-12-25T00:00:00Z","month":"12","_id":"18286","date_updated":"2024-12-05T14:20:54Z","citation":{"ieee":"O. Litany, T. Remez, E. Rodola, A. Bronstein, and M. Bronstein, “Deep functional maps: Structured prediction for dense shape correspondence,” in <i>2017 IEEE International Conference on Computer Vision (ICCV)</i>, 2017, vol. 31.","ama":"Litany O, Remez T, Rodola E, Bronstein A, Bronstein M. Deep functional maps: Structured prediction for dense shape correspondence. In: <i>2017 IEEE International Conference on Computer Vision (ICCV)</i>. Vol 31. IEEE; 2017. doi:<a href=\"https://doi.org/10.1109/iccv.2017.603\">10.1109/iccv.2017.603</a>","mla":"Litany, Or, et al. “Deep Functional Maps: Structured Prediction for Dense Shape Correspondence.” <i>2017 IEEE International Conference on Computer Vision (ICCV)</i>, vol. 31, 8237865, IEEE, 2017, doi:<a href=\"https://doi.org/10.1109/iccv.2017.603\">10.1109/iccv.2017.603</a>.","ista":"Litany O, Remez T, Rodola E, Bronstein A, Bronstein M. 2017. Deep functional maps: Structured prediction for dense shape correspondence. 2017 IEEE International Conference on Computer Vision (ICCV). 16th IEEE International Conference on Computer Vision vol. 31, 8237865.","short":"O. Litany, T. Remez, E. Rodola, A. Bronstein, M. Bronstein, in:, 2017 IEEE International Conference on Computer Vision (ICCV), IEEE, 2017.","apa":"Litany, O., Remez, T., Rodola, E., Bronstein, A., &#38; Bronstein, M. (2017). Deep functional maps: Structured prediction for dense shape correspondence. In <i>2017 IEEE International Conference on Computer Vision (ICCV)</i> (Vol. 31). IEEE. <a href=\"https://doi.org/10.1109/iccv.2017.603\">https://doi.org/10.1109/iccv.2017.603</a>","chicago":"Litany, Or, Tal Remez, Emanuele Rodola, Alexander Bronstein, and Michael Bronstein. “Deep Functional Maps: Structured Prediction for Dense Shape Correspondence.” In <i>2017 IEEE International Conference on Computer Vision (ICCV)</i>, Vol. 31. IEEE, 2017. <a href=\"https://doi.org/10.1109/iccv.2017.603\">https://doi.org/10.1109/iccv.2017.603</a>."},"publisher":"IEEE","language":[{"iso":"eng"}],"conference":{"end_date":"2017-10-29","start_date":"2017-10-22","name":"16th IEEE International Conference on Computer Vision"},"year":"2017","external_id":{"arxiv":["1704.08686"]},"scopus_import":"1","intvolume":"        31","oa_version":"Preprint","article_number":"8237865","abstract":[{"lang":"eng","text":"We introduce a new framework for learning dense correspondence between deformable 3D shapes. Existing learning based approaches model shape correspondence as a labelling problem, where each point of a query shape receives a label identifying a point on some reference domain; the correspondence is then constructed a posteriori by composing the label predictions of two input shapes. We propose a paradigm shift and design a structured prediction model in the space of functional maps, linear operators that provide a compact representation of the correspondence. We model the learning process via a deep residual network which takes dense descriptor fields defined on two shapes as input, and outputs a soft map between the two given objects. The resulting correspondence is shown to be accurate on several challenging benchmarks comprising multiple categories, synthetic models, real scans with acquisition artifacts, topological noise, and partiality."}],"volume":31,"date_created":"2024-10-09T07:48:43Z","status":"public","publication_status":"published","day":"25","doi":"10.1109/iccv.2017.603","department":[{"_id":"E-Lib"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","extern":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1704.08686"}],"oa":1},{"day":"03","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"ScienComp"}],"file":[{"relation":"main_file","content_type":"application/pdf","success":1,"date_updated":"2023-05-16T07:20:50Z","access_level":"open_access","file_size":1005486,"checksum":"7bcc499479d4f4c5ce6c0071c24ca6c6","date_created":"2023-05-16T07:20:50Z","file_name":"2017_AHPC_Schloegl.pdf","creator":"dernst","file_id":"12969"}],"month":"03","_id":"12905","page":"28","status":"public","date_updated":"2024-10-09T21:05:23Z","citation":{"chicago":"Schlögl, Alois, and Janos Kiss. “Scientific Computing at IST Austria.” In <i>AHPC17 – Austrian HPC Meeting 2017</i>, 28. 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Hauschild, and J. Friml, “Light sheet fluorescence microscopy of plant roots growing on the surface of a gel,” <i>Journal of visualized experiments JoVE</i>, vol. 2017, no. 119. Journal of Visualized Experiments, 2017.","ama":"von Wangenheim D, Hauschild R, Friml J. Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. <i>Journal of visualized experiments JoVE</i>. 2017;2017(119). doi:<a href=\"https://doi.org/10.3791/55044\">10.3791/55044</a>","mla":"von Wangenheim, Daniel, et al. “Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel.” <i>Journal of Visualized Experiments JoVE</i>, vol. 2017, no. 119, e55044, Journal of Visualized Experiments, 2017, doi:<a href=\"https://doi.org/10.3791/55044\">10.3791/55044</a>.","ista":"von Wangenheim D, Hauschild R, Friml J. 2017. Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. Journal of visualized experiments JoVE. 2017(119), e55044.","short":"D. von Wangenheim, R. Hauschild, J. Friml, Journal of Visualized Experiments JoVE 2017 (2017).","apa":"von Wangenheim, D., Hauschild, R., &#38; Friml, J. (2017). Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. <i>Journal of Visualized Experiments JoVE</i>. Journal of Visualized Experiments. <a href=\"https://doi.org/10.3791/55044\">https://doi.org/10.3791/55044</a>","chicago":"Wangenheim, Daniel von, Robert Hauschild, and Jiří Friml. “Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel.” <i>Journal of Visualized Experiments JoVE</i>. Journal of Visualized Experiments, 2017. <a href=\"https://doi.org/10.3791/55044\">https://doi.org/10.3791/55044</a>."},"month":"01","language":[{"iso":"eng"}],"publisher":"Journal of Visualized Experiments","year":"2017","intvolume":"      2017","external_id":{"isi":["000397847200041"]},"scopus_import":"1","abstract":[{"text":"One of the key questions in understanding plant development is how single cells behave in a larger context of the tissue. Therefore, it requires the observation of the whole organ with a high spatial- as well as temporal resolution over prolonged periods of time, which may cause photo-toxic effects. This protocol shows a plant sample preparation method for light-sheet microscopy, which is characterized by mounting the plant vertically on the surface of a gel. The plant is mounted in such a way that the roots are submerged in a liquid medium while the leaves remain in the air. In order to ensure photosynthetic activity of the plant, a custom-made lighting system illuminates the leaves. To keep the roots in darkness the water surface is covered with sheets of black plastic foil. This method allows long-term imaging of plant organ development in standardized conditions. ","lang":"eng"}],"article_number":"e55044","related_material":{"record":[{"id":"5565","relation":"popular_science","status":"public"}]},"date_created":"2018-12-11T11:50:01Z","volume":2017,"oa_version":"Published Version","project":[{"name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"},{"_id":"25716A02-B435-11E9-9278-68D0E5697425","grant_number":"282300","call_identifier":"FP7","name":"Polarity and subcellular dynamics in plants"}],"day":"18","department":[{"_id":"JiFr"},{"_id":"Bio"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"}],"doi":"10.3791/55044","status":"public","publication_status":"published","file_date_updated":"2018-12-12T10:16:32Z","oa":1,"pubrep_id":"808","issue":"119"},{"abstract":[{"text":"Auf der Suche nach einem Bibliothekssystem entschied sich die Forschungseinrichtung IST Austria im Jahr 2014 für das Open-Source-Produkt Koha. In einem ersten Schritt wurden zunächst Grundfunktionen aktiviert um im Anschluss diverse zusätzliche Tools zum Einsatz zu bringen. Die große Flexibilität des Systems erlaubt maßgeschneiderte Lösungen für unterschiedlichste Institutionen. Trotz Herausforderungen kann die Bibliothek auf eine erfolgreiche Implementierung zurückblicken.","lang":"ger"},{"text":"IST Austria was looking for a new library system until 2014 when the research institute decided\r\nto implement Koha. The library first activated basic functions of the open-source product and\r\nthen brought additional tools into operation. The high flexibility of the system allows customized\r\nsolutions for different institutions. Although the library faced some challenges, it can now look\r\nback on a successful implementation.","lang":"eng"}],"volume":3,"date_created":"2018-12-11T11:49:46Z","article_type":"original","oa_version":"Published Version","intvolume":"         3","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"file_date_updated":"2018-12-12T10:08:20Z","oa":1,"pubrep_id":"799","issue":"1","popular_science":"1","day":"01","doi":"10.11588/ip.2017.1.35227","department":[{"_id":"E-Lib"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication_status":"published","has_accepted_license":"1","type":"journal_article","date_published":"2017-01-01T00:00:00Z","title":"Ein freies Bibliothekssystem für wissenschaftliche Bibliotheken – Werkstattbericht der IST Austria Library","author":[{"orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","first_name":"Márton","last_name":"Villányi","full_name":"Villányi, Márton"}],"publist_id":"6360","publication_identifier":{"issn":["2297-3249"]},"article_processing_charge":"No","ddc":["020"],"publication":"Informationspraxis","year":"2017","file":[{"date_created":"2018-12-12T10:08:20Z","file_size":201163,"file_name":"IST-2017-799-v1+1_35227-112025-1-PB.pdf","creator":"system","file_id":"4680","relation":"main_file","content_type":"application/pdf","access_level":"open_access","date_updated":"2018-12-12T10:08:20Z"}],"month":"01","date_updated":"2024-10-09T20:57:18Z","_id":"1030","citation":{"chicago":"Villányi, Márton. “Ein Freies Bibliothekssystem Für Wissenschaftliche Bibliotheken – Werkstattbericht Der IST Austria Library.” <i>Informationspraxis</i>. Verein Informationspraxis , 2017. <a href=\"https://doi.org/10.11588/ip.2017.1.35227\">https://doi.org/10.11588/ip.2017.1.35227</a>.","ista":"Villányi M. 2017. Ein freies Bibliothekssystem für wissenschaftliche Bibliotheken – Werkstattbericht der IST Austria Library. Informationspraxis. 3(1).","apa":"Villányi, M. (2017). Ein freies Bibliothekssystem für wissenschaftliche Bibliotheken – Werkstattbericht der IST Austria Library. <i>Informationspraxis</i>. Verein Informationspraxis . <a href=\"https://doi.org/10.11588/ip.2017.1.35227\">https://doi.org/10.11588/ip.2017.1.35227</a>","short":"M. Villányi, Informationspraxis 3 (2017).","ieee":"M. Villányi, “Ein freies Bibliothekssystem für wissenschaftliche Bibliotheken – Werkstattbericht der IST Austria Library,” <i>Informationspraxis</i>, vol. 3, no. 1. Verein Informationspraxis , 2017.","ama":"Villányi M. Ein freies Bibliothekssystem für wissenschaftliche Bibliotheken – Werkstattbericht der IST Austria Library. <i>Informationspraxis</i>. 2017;3(1). doi:<a href=\"https://doi.org/10.11588/ip.2017.1.35227\">10.11588/ip.2017.1.35227</a>","mla":"Villányi, Márton. “Ein Freies Bibliothekssystem Für Wissenschaftliche Bibliotheken – Werkstattbericht Der IST Austria Library.” <i>Informationspraxis</i>, vol. 3, no. 1, Verein Informationspraxis , 2017, doi:<a href=\"https://doi.org/10.11588/ip.2017.1.35227\">10.11588/ip.2017.1.35227</a>."},"corr_author":"1","publisher":"Verein Informationspraxis ","language":[{"iso":"eng"}]},{"day":"01","department":[{"_id":"E-Lib"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.31263/voebm.v70i2.1898","status":"public","publication_status":"published","file_date_updated":"2020-07-14T12:48:09Z","oa":1,"issue":"2","popular_science":"1","intvolume":"        70","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","abstract":[{"lang":"eng","text":"On January the 1st, 2016 a new agreement between 32 Austrian scientific libraries and the publisher Springer took its effect: this deal covers accessing the licensed content on the one hand, and publishing open access on the other hand. More than 1000 papers by Austrian authors were published open access at Springer in the first year alone. The working group &quot;Springer Compact Evaluierung&quot; made the data for these articles available via the platform OpenAPC and would like to use this opportunity to give a short account of what this publishing agreement actually entails and the working group intends to do."}],"volume":70,"date_created":"2018-12-11T11:48:36Z","oa_version":"Published Version","file":[{"file_id":"5851","creator":"dernst","file_name":"2017_VOEB_Andrae.pdf","date_created":"2019-01-18T13:39:26Z","file_size":125065,"checksum":"558c18bcf5580d87dd371ec626d52075","date_updated":"2020-07-14T12:48:09Z","access_level":"open_access","content_type":"application/pdf","relation":"main_file"}],"_id":"807","citation":{"chicago":"Andrae, Magdalena, and Márton Villányi. “Der Springer Compact-Deal – Ein Erster Einblick in Die Evaluierung Einer Offsetting-Vereinbarung.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>. VÖB, 2017. <a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">https://doi.org/10.31263/voebm.v70i2.1898</a>.","ama":"Andrae M, Villányi M. Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung. <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. 2017;70(2):274-280. doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">10.31263/voebm.v70i2.1898</a>","mla":"Andrae, Magdalena, and Márton Villányi. “Der Springer Compact-Deal – Ein Erster Einblick in Die Evaluierung Einer Offsetting-Vereinbarung.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>, vol. 70, no. 2, VÖB, 2017, pp. 274–80, doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">10.31263/voebm.v70i2.1898</a>.","ieee":"M. Andrae and M. Villányi, “Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung,” <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol. 70, no. 2. VÖB, pp. 274–280, 2017.","apa":"Andrae, M., &#38; Villányi, M. (2017). Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung. <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>. VÖB. <a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">https://doi.org/10.31263/voebm.v70i2.1898</a>","short":"M. Andrae, M. Villányi, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare 70 (2017) 274–280.","ista":"Andrae M, Villányi M. 2017. Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung. Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. 70(2), 274–280."},"date_updated":"2025-07-10T11:55:04Z","page":"274 - 280","month":"08","language":[{"iso":"eng"}],"publisher":"VÖB","year":"2017","publication_identifier":{"issn":["1022-2588"]},"article_processing_charge":"No","ddc":["020"],"publication":"Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare","has_accepted_license":"1","type":"journal_article","date_published":"2017-08-01T00:00:00Z","author":[{"last_name":"Andrae","first_name":"Magdalena","full_name":"Andrae, Magdalena"},{"orcid":"0000-0001-8126-0426","first_name":"Márton","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","last_name":"Villányi","full_name":"Villányi, Márton"}],"title":"Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung","publist_id":"6843"},{"file_date_updated":"2020-07-14T12:48:11Z","oa":1,"issue":"2","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"E-Lib"}],"doi":"10.31263/voebm.v70i2.1678","status":"public","publication_status":"published","abstract":[{"text":"What data is needed about data? Describing the process to answer this question for the institutional data repository IST DataRep.","lang":"eng"}],"volume":70,"date_created":"2018-12-11T11:48:42Z","oa_version":"Published Version","intvolume":"        70","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","year":"2017","file":[{"relation":"main_file","content_type":"application/pdf","date_updated":"2020-07-14T12:48:11Z","access_level":"open_access","date_created":"2019-01-18T13:32:17Z","file_size":7843975,"checksum":"7c4544d07efa2c2add8612b489abb4e2","file_name":"2017_VOEB_Petritsch.pdf","creator":"dernst","file_id":"5850"}],"citation":{"chicago":"Petritsch, Barbara. “Metadata for Research Data in Practice.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>. VÖB, 2017. <a href=\"https://doi.org/10.31263/voebm.v70i2.1678\">https://doi.org/10.31263/voebm.v70i2.1678</a>.","apa":"Petritsch, B. (2017). Metadata for research data in practice. <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>. VÖB. <a href=\"https://doi.org/10.31263/voebm.v70i2.1678\">https://doi.org/10.31263/voebm.v70i2.1678</a>","short":"B. Petritsch, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare 70 (2017) 200–207.","ista":"Petritsch B. 2017. Metadata for research data in practice. Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare. 70(2), 200–207.","ama":"Petritsch B. Metadata for research data in practice. <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>. 2017;70(2):200-207. doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1678\">10.31263/voebm.v70i2.1678</a>","mla":"Petritsch, Barbara. “Metadata for Research Data in Practice.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>, vol. 70, no. 2, VÖB, 2017, pp. 200–07, doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1678\">10.31263/voebm.v70i2.1678</a>.","ieee":"B. Petritsch, “Metadata for research data in practice,” <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>, vol. 70, no. 2. VÖB, pp. 200–207, 2017."},"_id":"825","page":"200 - 207","date_updated":"2025-07-10T11:55:09Z","month":"08","language":[{"iso":"eng"}],"publisher":"VÖB","corr_author":"1","type":"journal_article","has_accepted_license":"1","date_published":"2017-08-01T00:00:00Z","author":[{"full_name":"Petritsch, Barbara","first_name":"Barbara","id":"406048EC-F248-11E8-B48F-1D18A9856A87","last_name":"Petritsch","orcid":"0000-0003-2724-4614"}],"title":"Metadata for research data in practice","publist_id":"6823","publication_identifier":{"issn":["1022-2588"]},"article_processing_charge":"No","ddc":["020"],"publication":"Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare"},{"year":"2017","acknowledgement":"Funding: Marie Curie Actions (FP7/2007-2013 no 291734) to Daniel von Wangenheim; Austrian Science Fund (M 2128-B21) to Matyáš Fendrych; Austrian Science Fund (FWF01_I1774S) to Eva Benková; European Research Council (FP7/2007-2013 no 282300) to Jiří Friml. \r\nThe authors are grateful to the Miba Machine Shop at IST Austria for their contribution to the microscope setup and to Yvonne Kemper for reading, understanding and correcting the manuscript.\r\n#BioimagingFacility","file":[{"file_id":"5315","creator":"system","file_name":"IST-2017-847-v1+1_elife-26792-v2.pdf","file_size":19581847,"checksum":"9af3398cb0d81f99d79016a616df22e9","date_created":"2018-12-12T10:17:57Z","access_level":"open_access","date_updated":"2020-07-14T12:48:15Z","content_type":"application/pdf","relation":"main_file"}],"date_updated":"2025-04-15T06:37:26Z","_id":"946","citation":{"ieee":"D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, and J. Friml, “Live tracking of moving samples in confocal microscopy for vertically grown roots,” <i>eLife</i>, vol. 6. eLife Sciences Publications, 2017.","mla":"von Wangenheim, Daniel, et al. “Live Tracking of Moving Samples in Confocal Microscopy for Vertically Grown Roots.” <i>ELife</i>, vol. 6, e26792, eLife Sciences Publications, 2017, doi:<a href=\"https://doi.org/10.7554/eLife.26792\">10.7554/eLife.26792</a>.","ama":"von Wangenheim D, Hauschild R, Fendrych M, Barone V, Benková E, Friml J. Live tracking of moving samples in confocal microscopy for vertically grown roots. <i>eLife</i>. 2017;6. doi:<a href=\"https://doi.org/10.7554/eLife.26792\">10.7554/eLife.26792</a>","ista":"von Wangenheim D, Hauschild R, Fendrych M, Barone V, Benková E, Friml J. 2017. Live tracking of moving samples in confocal microscopy for vertically grown roots. eLife. 6, e26792.","short":"D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, J. Friml, ELife 6 (2017).","apa":"von Wangenheim, D., Hauschild, R., Fendrych, M., Barone, V., Benková, E., &#38; Friml, J. (2017). Live tracking of moving samples in confocal microscopy for vertically grown roots. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.26792\">https://doi.org/10.7554/eLife.26792</a>","chicago":"Wangenheim, Daniel von, Robert Hauschild, Matyas Fendrych, Vanessa Barone, Eva Benková, and Jiří Friml. “Live Tracking of Moving Samples in Confocal Microscopy for Vertically Grown Roots.” <i>ELife</i>. eLife Sciences Publications, 2017. <a href=\"https://doi.org/10.7554/eLife.26792\">https://doi.org/10.7554/eLife.26792</a>."},"month":"06","language":[{"iso":"eng"}],"publisher":"eLife Sciences Publications","has_accepted_license":"1","type":"journal_article","date_published":"2017-06-19T00:00:00Z","author":[{"id":"49E91952-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel","last_name":"Von Wangenheim","full_name":"Von Wangenheim, Daniel","orcid":"0000-0002-6862-1247"},{"id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Hauschild","full_name":"Hauschild, Robert","orcid":"0000-0001-9843-3522"},{"orcid":"0000-0002-9767-8699","full_name":"Fendrych, Matyas","id":"43905548-F248-11E8-B48F-1D18A9856A87","first_name":"Matyas","last_name":"Fendrych"},{"full_name":"Barone, Vanessa","first_name":"Vanessa","id":"419EECCC-F248-11E8-B48F-1D18A9856A87","last_name":"Barone","orcid":"0000-0003-2676-3367"},{"last_name":"Benková","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","full_name":"Benková, Eva","orcid":"0000-0002-8510-9739"},{"orcid":"0000-0002-8302-7596","first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Friml, Jirí"}],"title":"Live tracking of moving samples in confocal microscopy for vertically grown roots","publist_id":"6471","ec_funded":1,"isi":1,"quality_controlled":"1","article_processing_charge":"Yes","ddc":["570"],"publication":"eLife","oa":1,"file_date_updated":"2020-07-14T12:48:15Z","pubrep_id":"847","day":"19","project":[{"call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","name":"International IST Postdoc Fellowship Programme"},{"grant_number":"M02128","_id":"2572ED28-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Molecular basis of root growth inhibition by auxin"},{"name":"Hormone cross-talk drives nutrient dependent plant development","_id":"2542D156-B435-11E9-9278-68D0E5697425","grant_number":"I 1774-B16","call_identifier":"FWF"},{"call_identifier":"FP7","_id":"25716A02-B435-11E9-9278-68D0E5697425","grant_number":"282300","name":"Polarity and subcellular dynamics in plants"}],"department":[{"_id":"JiFr"},{"_id":"Bio"},{"_id":"CaHe"},{"_id":"EvBe"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","doi":"10.7554/eLife.26792","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"}],"status":"public","publication_status":"published","abstract":[{"lang":"eng","text":"Roots navigate through soil integrating environmental signals to orient their growth. The Arabidopsis root is a widely used model for developmental, physiological and cell biological studies. Live imaging greatly aids these efforts, but the horizontal sample position and continuous root tip displacement present significant difficulties. Here, we develop a confocal microscope setup for vertical sample mounting and integrated directional illumination. We present TipTracker – a custom software for automatic tracking of diverse moving objects usable on various microscope setups. Combined, this enables observation of root tips growing along the natural gravity vector over prolonged periods of time, as well as the ability to induce rapid gravity or light stimulation. We also track migrating cells in the developing zebrafish embryo, demonstrating the utility of this system in the acquisition of high-resolution data sets of dynamic samples. We provide detailed descriptions of the tools enabling the easy implementation on other microscopes."}],"article_number":"e26792","related_material":{"record":[{"status":"public","id":"5566","relation":"popular_science"}]},"volume":6,"date_created":"2018-12-11T11:49:21Z","oa_version":"Published Version","intvolume":"         6","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"isi":["000404728300001"]},"scopus_import":"1"},{"pubrep_id":"724","year":"2017","oa":1,"file_date_updated":"2020-07-14T12:46:59Z","OA_place":"publisher","file":[{"date_created":"2018-12-12T11:53:22Z","file_size":3460985,"checksum":"6321792dcfa82bf490f17615a9b22355","file_name":"IST-2017-724-v1+1_DataRep_Project_Report_2017.pdf","creator":"system","file_id":"5483","relation":"main_file","content_type":"application/pdf","access_level":"open_access","date_updated":"2020-07-14T12:46:59Z"}],"department":[{"_id":"E-Lib"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"26","publication_status":"published","language":[{"iso":"eng"}],"corr_author":"1","publisher":"Institute of Science and Technology Austria","date_updated":"2025-07-10T11:52:50Z","_id":"5450","citation":{"chicago":"Petritsch, Barbara. <i>Implementing the Institutional Data Repository IST DataRep</i>. Institute of Science and Technology Austria, 2017.","ista":"Petritsch B. 2017. Implementing the institutional data repository IST DataRep, Institute of Science and Technology Austria,p.","short":"B. Petritsch, Implementing the Institutional Data Repository IST DataRep, Institute of Science and Technology Austria, 2017.","apa":"Petritsch, B. (2017). <i>Implementing the institutional data repository IST DataRep</i>. Institute of Science and Technology Austria.","ieee":"B. Petritsch, <i>Implementing the institutional data repository IST DataRep</i>. Institute of Science and Technology Austria, 2017.","mla":"Petritsch, Barbara. <i>Implementing the Institutional Data Repository IST DataRep</i>. Institute of Science and Technology Austria, 2017.","ama":"Petritsch B. <i>Implementing the Institutional Data Repository IST DataRep</i>. Institute of Science and Technology Austria; 2017."},"status":"public","month":"06","date_created":"2018-12-12T11:39:24Z","date_published":"2017-06-26T00:00:00Z","abstract":[{"text":"In this report the implementation of the institutional data repository IST DataRep at IST Austria will be covered: Starting with the research phase when requirements for a repository were established, the procedure of choosing a repository-software and its customization based on the results of user-testings will be discussed. Followed by reflections on the marketing strategies in regard of impact, and at the end sharing some experiences of one year operating IST DataRep.","lang":"eng"}],"has_accepted_license":"1","type":"report","OA_type":"gold","oa_version":"Published Version","author":[{"orcid":"0000-0003-2724-4614","full_name":"Petritsch, Barbara","id":"406048EC-F248-11E8-B48F-1D18A9856A87","first_name":"Barbara","last_name":"Petritsch"}],"title":"Implementing the institutional data repository IST DataRep","article_processing_charge":"No","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"ddc":["020"]},{"oa":1,"file_date_updated":"2020-07-14T12:47:03Z","year":"2017","keyword":["single cell microscopy","mother machine microfluidic device","AcrAB-TolC pump","multi-drug efflux","Escherichia coli"],"day":"10","doi":"10.15479/AT:ISTA:53","file":[{"relation":"main_file","content_type":"application/zip","access_level":"open_access","date_updated":"2020-07-14T12:47:03Z","date_created":"2018-12-12T13:02:38Z","checksum":"d77859af757ac8025c50c7b12b52eaf3","file_size":6773204,"file_name":"IST-2017-53-v1+1_Data_MDE.zip","creator":"system","file_id":"5603"}],"department":[{"_id":"CaGu"},{"_id":"GaTk"},{"_id":"Bio"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"03","citation":{"chicago":"Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gašper Tkačik, and Calin C Guet. “Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity.” Institute of Science and Technology Austria, 2017. <a href=\"https://doi.org/10.15479/AT:ISTA:53\">https://doi.org/10.15479/AT:ISTA:53</a>.","short":"T. Bergmiller, A.M. Andersson, K. Tomasek, E. Balleza, D. Kiviet, R. Hauschild, G. Tkačik, C.C. Guet, (2017).","apa":"Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:53\">https://doi.org/10.15479/AT:ISTA:53</a>","ista":"Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkačik G, Guet CC. 2017. Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:53\">10.15479/AT:ISTA:53</a>.","ama":"Bergmiller T, Andersson AM, Tomasek K, et al. Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. 2017. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:53\">10.15479/AT:ISTA:53</a>","mla":"Bergmiller, Tobias, et al. <i>Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity</i>. Institute of Science and Technology Austria, 2017, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:53\">10.15479/AT:ISTA:53</a>.","ieee":"T. Bergmiller <i>et al.</i>, “Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity.” Institute of Science and Technology Austria, 2017."},"_id":"5560","status":"public","date_updated":"2025-09-11T07:05:03Z","publisher":"Institute of Science and Technology Austria","related_material":{"record":[{"relation":"research_paper","id":"665","status":"public"}]},"has_accepted_license":"1","type":"research_data","abstract":[{"text":"This repository contains the data collected for the manuscript \"Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity\".\r\nThe data is compressed into a single archive. Within the archive, different folders correspond to figures of the main text and the SI of the related publication.\r\nData is saved as plain text, with each folder containing a separate readme file describing the format. Typically, the data is from fluorescence microscopy measurements of single cells growing in a microfluidic \"mother machine\" device, and consists of relevant values (primarily arbitrary unit or normalized fluorescence measurements, and division times / growth rates) after raw microscopy images have been processed, segmented, and their features extracted, as described in the methods section of the related publication.","lang":"eng"}],"date_published":"2017-03-10T00:00:00Z","date_created":"2018-12-12T12:31:32Z","datarep_id":"53","title":"Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity","author":[{"last_name":"Bergmiller","first_name":"Tobias","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","full_name":"Bergmiller, Tobias","orcid":"0000-0001-5396-4346"},{"full_name":"Andersson, Anna M","last_name":"Andersson","id":"2B8A40DA-F248-11E8-B48F-1D18A9856A87","first_name":"Anna M","orcid":"0000-0003-2912-6769"},{"orcid":"0000-0003-3768-877X","full_name":"Tomasek, Kathrin","last_name":"Tomasek","first_name":"Kathrin","id":"3AEC8556-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Balleza","first_name":"Enrique","full_name":"Balleza, Enrique"},{"full_name":"Kiviet, Daniel","last_name":"Kiviet","first_name":"Daniel"},{"full_name":"Hauschild, Robert","last_name":"Hauschild","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","orcid":"0000-0001-9843-3522"},{"orcid":"0000-0002-6699-1455","first_name":"Gasper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkacik","full_name":"Tkacik, Gasper"},{"orcid":"0000-0001-6220-2052","last_name":"Guet","first_name":"Calin C","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","full_name":"Guet, Calin C"}],"oa_version":"Published Version","article_processing_charge":"No","ddc":["571"],"tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode"}},{"date_published":"2017-04-10T00:00:00Z","date_created":"2018-12-12T12:31:34Z","abstract":[{"text":"One of the key questions in understanding plant development is how single cells behave in a larger context of the tissue. Therefore, it requires the observation of the whole organ with a high spatial- as well as temporal resolution over prolonged periods of time, which may cause photo-toxic effects. This protocol shows a plant sample preparation method for light-sheet microscopy, which is characterized by mounting the plant vertically on the surface of a gel. The plant is mounted in such a way that the roots are submerged in a liquid medium while the leaves remain in the air. In order to ensure photosynthetic activity of the plant, a custom-made lighting system illuminates the leaves. To keep the roots in darkness the water surface is covered with sheets of black plastic foil. This method allows long-term imaging of plant organ development in standardized conditions. \r\nThe Video is licensed under a CC BY NC ND license. ","lang":"eng"}],"has_accepted_license":"1","type":"research_data","related_material":{"record":[{"id":"1078","relation":"research_paper","status":"public"}]},"ec_funded":1,"publist_id":"6302","author":[{"full_name":"Von Wangenheim, Daniel","last_name":"Von Wangenheim","first_name":"Daniel","id":"49E91952-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6862-1247"},{"orcid":"0000-0001-9843-3522","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Hauschild","full_name":"Hauschild, Robert"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí"}],"oa_version":"Published Version","title":"Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel","datarep_id":"66","article_processing_charge":"No","ddc":["580"],"year":"2017","oa":1,"file_date_updated":"2020-07-14T12:47:03Z","acknowledgement":"fund: FP7-ERC 0101109","department":[{"_id":"JiFr"},{"_id":"Bio"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"relation":"main_file","content_type":"video/mp4","date_updated":"2020-07-14T12:47:03Z","access_level":"open_access","file_size":101497758,"checksum":"b7552fc23540a85dc5a22fd4484eae71","date_created":"2018-12-12T13:02:33Z","file_name":"IST-2017-66-v1+1_WangenheimHighResolution55044-NEW_1.mp4","creator":"system","file_id":"5599"}],"doi":"10.15479/AT:ISTA:66","day":"10","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"}],"publisher":"Institute of Science and Technology Austria","date_updated":"2025-04-15T07:48:04Z","_id":"5565","status":"public","citation":{"chicago":"Wangenheim, Daniel von, Robert Hauschild, and Jiří Friml. “Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel.” Institute of Science and Technology Austria, 2017. <a href=\"https://doi.org/10.15479/AT:ISTA:66\">https://doi.org/10.15479/AT:ISTA:66</a>.","mla":"von Wangenheim, Daniel, et al. <i>Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel</i>. Institute of Science and Technology Austria, 2017, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:66\">10.15479/AT:ISTA:66</a>.","ama":"von Wangenheim D, Hauschild R, Friml J. Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel. 2017. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:66\">10.15479/AT:ISTA:66</a>","ieee":"D. von Wangenheim, R. Hauschild, and J. Friml, “Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel.” Institute of Science and Technology Austria, 2017.","apa":"von Wangenheim, D., Hauschild, R., &#38; Friml, J. (2017). Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:66\">https://doi.org/10.15479/AT:ISTA:66</a>","short":"D. von Wangenheim, R. Hauschild, J. Friml, (2017).","ista":"von Wangenheim D, Hauschild R, Friml J. 2017. Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:66\">10.15479/AT:ISTA:66</a>."},"month":"04"},{"publisher":"Institute of Science and Technology Austria","month":"07","date_updated":"2025-04-15T07:48:05Z","_id":"5566","status":"public","citation":{"short":"R. Hauschild, (2017).","apa":"Hauschild, R. (2017). Live tracking of moving samples in confocal microscopy for vertically grown roots. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:69\">https://doi.org/10.15479/AT:ISTA:69</a>","ista":"Hauschild R. 2017. Live tracking of moving samples in confocal microscopy for vertically grown roots, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:69\">10.15479/AT:ISTA:69</a>.","ama":"Hauschild R. Live tracking of moving samples in confocal microscopy for vertically grown roots. 2017. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:69\">10.15479/AT:ISTA:69</a>","mla":"Hauschild, Robert. <i>Live Tracking of Moving Samples in Confocal Microscopy for Vertically Grown Roots</i>. Institute of Science and Technology Austria, 2017, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:69\">10.15479/AT:ISTA:69</a>.","ieee":"R. Hauschild, “Live tracking of moving samples in confocal microscopy for vertically grown roots.” Institute of Science and Technology Austria, 2017.","chicago":"Hauschild, Robert. “Live Tracking of Moving Samples in Confocal Microscopy for Vertically Grown Roots.” Institute of Science and Technology Austria, 2017. <a href=\"https://doi.org/10.15479/AT:ISTA:69\">https://doi.org/10.15479/AT:ISTA:69</a>."},"doi":"10.15479/AT:ISTA:69","file":[{"file_id":"5636","creator":"system","file_name":"IST-2017-69-v1+2_TipTrackerZeissLSM700.zip","date_created":"2018-12-12T13:04:12Z","file_size":1587986,"checksum":"a976000e6715106724a271cc9422be4a","date_updated":"2020-07-14T12:47:04Z","access_level":"open_access","content_type":"application/zip","relation":"main_file"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"Bio"}],"day":"21","keyword":["tool","tracking","confocal microscopy"],"year":"2017","file_date_updated":"2020-07-14T12:47:04Z","oa":1,"ddc":["570"],"tmp":{"short":"CC BY-SA (4.0)","image":"/images/cc_by_sa.png","legal_code_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","name":"Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0)"},"article_processing_charge":"No","title":"Live tracking of moving samples in confocal microscopy for vertically grown roots","datarep_id":"69","license":"https://creativecommons.org/licenses/by-sa/4.0/","oa_version":"Published Version","author":[{"orcid":"0000-0001-9843-3522","last_name":"Hauschild","first_name":"Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","full_name":"Hauschild, Robert"}],"date_created":"2018-12-12T12:31:34Z","date_published":"2017-07-21T00:00:00Z","related_material":{"record":[{"relation":"research_paper","id":"946","status":"public"}]},"has_accepted_license":"1","type":"research_data","abstract":[{"lang":"eng","text":"Current minimal version of TipTracker"}]},{"file_date_updated":"2020-07-14T12:47:04Z","oa":1,"year":"2017","keyword":["Cell migration","tracking","forward migration index","FMI"],"status":"public","_id":"5570","date_updated":"2024-02-21T13:47:14Z","citation":{"ieee":"R. Hauschild, “Forward migration indexes.” Institute of Science and Technology Austria, 2017.","mla":"Hauschild, Robert. <i>Forward Migration Indexes</i>. Institute of Science and Technology Austria, 2017, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:75\">10.15479/AT:ISTA:75</a>.","ama":"Hauschild R. Forward migration indexes. 2017. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:75\">10.15479/AT:ISTA:75</a>","ista":"Hauschild R. 2017. Forward migration indexes, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:75\">10.15479/AT:ISTA:75</a>.","apa":"Hauschild, R. (2017). Forward migration indexes. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:75\">https://doi.org/10.15479/AT:ISTA:75</a>","short":"R. Hauschild, (2017).","chicago":"Hauschild, Robert. “Forward Migration Indexes.” Institute of Science and Technology Austria, 2017. <a href=\"https://doi.org/10.15479/AT:ISTA:75\">https://doi.org/10.15479/AT:ISTA:75</a>."},"month":"10","publisher":"Institute of Science and Technology Austria","day":"04","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"relation":"main_file","content_type":"application/octet-stream","date_updated":"2020-07-14T12:47:04Z","access_level":"open_access","checksum":"cb7a2fa622460eca6231d659ce590e32","file_size":799,"date_created":"2018-12-12T13:02:29Z","file_name":"IST-2017-75-v1+1_FMI.m","creator":"system","file_id":"5596"}],"department":[{"_id":"Bio"}],"doi":"10.15479/AT:ISTA:75","oa_version":"Published Version","author":[{"full_name":"Hauschild, Robert","first_name":"Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","last_name":"Hauschild","orcid":"0000-0001-9843-3522"}],"title":"Forward migration indexes","datarep_id":"75","abstract":[{"text":"Matlab script to calculate the forward migration indexes (<d_y>/<L>) from TrackMate spot-statistics files.","lang":"eng"}],"type":"research_data","has_accepted_license":"1","date_created":"2018-12-12T12:31:35Z","date_published":"2017-10-04T00:00:00Z","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode"},"ddc":["570"],"article_processing_charge":"No"},{"status":"public","publication_status":"published","day":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"ScienComp"},{"_id":"PeJo"}],"doi":"10.3233/978-1-61499-759-7-356","oa":1,"file_date_updated":"2020-07-14T12:47:27Z","pubrep_id":"906","external_id":{"isi":["000426828000047"]},"tmp":{"image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"scopus_import":"1","intvolume":"       236","license":"https://creativecommons.org/licenses/by-nc/4.0/","oa_version":"Published Version","abstract":[{"text":"Background: Standards have become available to share semantically encoded vital parameters from medical devices, as required for example by personal healthcare records. Standardised sharing of biosignal data largely remains open. Objectives: The goal of this work is to explore available biosignal file format and data exchange standards and profiles, and to conceptualise end-To-end solutions. Methods: The authors reviewed and discussed available biosignal file format standards with other members of international standards development organisations (SDOs). Results: A raw concept for standards based acquisition, storage, archiving and sharing of biosignals was developed. The GDF format may serve for storing biosignals. Signals can then be shared using FHIR resources and may be stored on FHIR servers or in DICOM archives, with DICOM waveforms as one possible format. Conclusion: Currently a group of international SDOs (e.g. HL7, IHE, DICOM, IEEE) is engaged in intensive discussions. This discussion extends existing work that already was adopted by large implementer communities. The concept presented here only reports the current status of the discussion in Austria. The discussion will continue internationally, with results to be expected over the coming years.","lang":"eng"}],"volume":236,"date_created":"2018-12-11T11:47:36Z","date_updated":"2025-09-11T07:27:53Z","_id":"630","page":"356 - 362","citation":{"chicago":"Sauermann, Stefan, Veronika David, Alois Schlögl, Reinhard Egelkraut, Matthias Frohner, Birgit Pohn, Philipp Urbauer, and Alexander Mense. “Biosignals Standards and FHIR: The Way to Go,” 236:356–62. IOS Press, 2017. <a href=\"https://doi.org/10.3233/978-1-61499-759-7-356\">https://doi.org/10.3233/978-1-61499-759-7-356</a>.","ieee":"S. Sauermann <i>et al.</i>, “Biosignals standards and FHIR: The way to go,” presented at the eHealth: Health Informatics Meets eHealth, Vienna, Austria, 2017, vol. 236, pp. 356–362.","mla":"Sauermann, Stefan, et al. <i>Biosignals Standards and FHIR: The Way to Go</i>. Vol. 236, IOS Press, 2017, pp. 356–62, doi:<a href=\"https://doi.org/10.3233/978-1-61499-759-7-356\">10.3233/978-1-61499-759-7-356</a>.","ama":"Sauermann S, David V, Schlögl A, et al. Biosignals standards and FHIR: The way to go. In: Vol 236. IOS Press; 2017:356-362. doi:<a href=\"https://doi.org/10.3233/978-1-61499-759-7-356\">10.3233/978-1-61499-759-7-356</a>","ista":"Sauermann S, David V, Schlögl A, Egelkraut R, Frohner M, Pohn B, Urbauer P, Mense A. 2017. Biosignals standards and FHIR: The way to go. eHealth: Health Informatics Meets eHealth, Studies in Health Technology and Informatics, vol. 236, 356–362.","short":"S. Sauermann, V. David, A. Schlögl, R. Egelkraut, M. Frohner, B. Pohn, P. Urbauer, A. Mense, in:, IOS Press, 2017, pp. 356–362.","apa":"Sauermann, S., David, V., Schlögl, A., Egelkraut, R., Frohner, M., Pohn, B., … Mense, A. (2017). Biosignals standards and FHIR: The way to go (Vol. 236, pp. 356–362). Presented at the eHealth: Health Informatics Meets eHealth, Vienna, Austria: IOS Press. <a href=\"https://doi.org/10.3233/978-1-61499-759-7-356\">https://doi.org/10.3233/978-1-61499-759-7-356</a>"},"month":"01","language":[{"iso":"eng"}],"publisher":"IOS Press","file":[{"relation":"main_file","content_type":"application/pdf","date_updated":"2020-07-14T12:47:27Z","access_level":"open_access","date_created":"2018-12-12T10:11:56Z","file_size":443635,"checksum":"1254dcc5b04a996d97fad9a726b42727","file_name":"IST-2017-906-v1+1_SHTI236-0356.pdf","creator":"system","file_id":"4913"}],"year":"2017","conference":{"start_date":"2017-05-23","location":"Vienna, Austria","end_date":"2017-05-24","name":"eHealth: Health Informatics Meets eHealth"},"ddc":["005"],"quality_controlled":"1","publication_identifier":{"isbn":["978-161499758-0"]},"article_processing_charge":"No","author":[{"full_name":"Sauermann, Stefan","first_name":"Stefan","last_name":"Sauermann"},{"first_name":"Veronika","last_name":"David","full_name":"David, Veronika"},{"orcid":"0000-0002-5621-8100","full_name":"Schlögl, Alois","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","first_name":"Alois","last_name":"Schlögl"},{"first_name":"Reinhard","last_name":"Egelkraut","full_name":"Egelkraut, Reinhard"},{"last_name":"Frohner","first_name":"Matthias","full_name":"Frohner, Matthias"},{"full_name":"Pohn, Birgit","first_name":"Birgit","last_name":"Pohn"},{"full_name":"Urbauer, Philipp","last_name":"Urbauer","first_name":"Philipp"},{"full_name":"Mense, Alexander","last_name":"Mense","first_name":"Alexander"}],"title":"Biosignals standards and FHIR: The way to go","alternative_title":["Studies in Health Technology and Informatics"],"publist_id":"7164","isi":1,"type":"conference","has_accepted_license":"1","date_published":"2017-01-01T00:00:00Z"},{"issue":"6335","day":"21","project":[{"call_identifier":"FWF","_id":"254E9036-B435-11E9-9278-68D0E5697425","grant_number":"P28844-B27","name":"Biophysics of information processing in gene regulation"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"CaGu"},{"_id":"GaTk"},{"_id":"Bio"}],"doi":"10.1126/science.aaf4762","status":"public","publication_status":"published","abstract":[{"lang":"eng","text":"The molecular mechanisms underlying phenotypic variation in isogenic bacterial populations remain poorly understood.We report that AcrAB-TolC, the main multidrug efflux pump of Escherichia coli, exhibits a strong partitioning bias for old cell poles by a segregation mechanism that is mediated by ternary AcrAB-TolC complex formation. Mother cells inheriting old poles are phenotypically distinct and display increased drug efflux activity relative to daughters. Consequently, we find systematic and long-lived growth differences between mother and daughter cells in the presence of subinhibitory drug concentrations. A simple model for biased partitioning predicts a population structure of long-lived and highly heterogeneous phenotypes. This straightforward mechanism of generating sustained growth rate differences at subinhibitory antibiotic concentrations has implications for understanding the emergence of multidrug resistance in bacteria."}],"related_material":{"record":[{"status":"public","id":"5560","relation":"popular_science"}]},"article_type":"original","volume":356,"date_created":"2018-12-11T11:47:48Z","oa_version":"None","intvolume":"       356","external_id":{"isi":["000399540100060"]},"scopus_import":"1","year":"2017","citation":{"ista":"Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkačik G, Guet CC. 2017. Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science. 356(6335), 311–315.","apa":"Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.aaf4762\">https://doi.org/10.1126/science.aaf4762</a>","short":"T. Bergmiller, A.M. Andersson, K. Tomasek, E. Balleza, D. Kiviet, R. Hauschild, G. Tkačik, C.C. Guet, Science 356 (2017) 311–315.","ieee":"T. Bergmiller <i>et al.</i>, “Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity,” <i>Science</i>, vol. 356, no. 6335. American Association for the Advancement of Science, pp. 311–315, 2017.","ama":"Bergmiller T, Andersson AM, Tomasek K, et al. Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. <i>Science</i>. 2017;356(6335):311-315. doi:<a href=\"https://doi.org/10.1126/science.aaf4762\">10.1126/science.aaf4762</a>","mla":"Bergmiller, Tobias, et al. “Biased Partitioning of the Multidrug Efflux Pump AcrAB TolC Underlies Long Lived Phenotypic Heterogeneity.” <i>Science</i>, vol. 356, no. 6335, American Association for the Advancement of Science, 2017, pp. 311–15, doi:<a href=\"https://doi.org/10.1126/science.aaf4762\">10.1126/science.aaf4762</a>.","chicago":"Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gašper Tkačik, and Calin C Guet. “Biased Partitioning of the Multidrug Efflux Pump AcrAB TolC Underlies Long Lived Phenotypic Heterogeneity.” <i>Science</i>. American Association for the Advancement of Science, 2017. <a href=\"https://doi.org/10.1126/science.aaf4762\">https://doi.org/10.1126/science.aaf4762</a>."},"_id":"665","page":"311 - 315","date_updated":"2025-09-11T07:05:04Z","month":"04","language":[{"iso":"eng"}],"corr_author":"1","publisher":"American Association for the Advancement of Science","type":"journal_article","date_published":"2017-04-21T00:00:00Z","author":[{"last_name":"Bergmiller","first_name":"Tobias","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","full_name":"Bergmiller, Tobias","orcid":"0000-0001-5396-4346"},{"orcid":"0000-0003-2912-6769","full_name":"Andersson, Anna M","id":"2B8A40DA-F248-11E8-B48F-1D18A9856A87","first_name":"Anna M","last_name":"Andersson"},{"full_name":"Tomasek, Kathrin","last_name":"Tomasek","first_name":"Kathrin","id":"3AEC8556-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3768-877X"},{"full_name":"Balleza, Enrique","last_name":"Balleza","first_name":"Enrique"},{"first_name":"Daniel","last_name":"Kiviet","full_name":"Kiviet, Daniel"},{"orcid":"0000-0001-9843-3522","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Hauschild","full_name":"Hauschild, Robert"},{"last_name":"Tkacik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gasper","full_name":"Tkacik, Gasper","orcid":"0000-0002-6699-1455"},{"orcid":"0000-0001-6220-2052","last_name":"Guet","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","first_name":"Calin C","full_name":"Guet, Calin C"}],"title":"Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity","publist_id":"7064","isi":1,"quality_controlled":"1","publication_identifier":{"issn":["0036-8075"]},"article_processing_charge":"No","publication":"Science"},{"date_published":"2017-05-02T00:00:00Z","has_accepted_license":"1","type":"journal_article","isi":1,"ec_funded":1,"publist_id":"7052","title":"Locally triggered release of the chemokine CCL21 promotes dendritic cell transmigration across lymphatic endothelia","author":[{"last_name":"Vaahtomeri","first_name":"Kari","id":"368EE576-F248-11E8-B48F-1D18A9856A87","full_name":"Vaahtomeri, Kari","orcid":"0000-0001-7829-3518"},{"first_name":"Markus","id":"3DAB9AFC-F248-11E8-B48F-1D18A9856A87","last_name":"Brown","full_name":"Brown, Markus"},{"last_name":"Hauschild","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","full_name":"Hauschild, Robert","orcid":"0000-0001-9843-3522"},{"first_name":"Ingrid","id":"4C7D837E-F248-11E8-B48F-1D18A9856A87","last_name":"De Vries","full_name":"De Vries, Ingrid"},{"orcid":"0000-0002-1073-744X","full_name":"Leithner, Alexander F","first_name":"Alexander F","id":"3B1B77E4-F248-11E8-B48F-1D18A9856A87","last_name":"Leithner"},{"orcid":"0000-0001-8599-1226","full_name":"Mehling, Matthias","last_name":"Mehling","first_name":"Matthias","id":"3C23B994-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-9735-5315","id":"3F99E422-F248-11E8-B48F-1D18A9856A87","first_name":"Walter","last_name":"Kaufmann","full_name":"Kaufmann, Walter"},{"orcid":"0000-0002-6620-9179","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K","last_name":"Sixt","full_name":"Sixt, Michael K"}],"article_processing_charge":"Yes","publication_identifier":{"issn":["2211-1247"]},"quality_controlled":"1","publication":"Cell Reports","ddc":["570"],"year":"2017","file":[{"access_level":"open_access","date_updated":"2020-07-14T12:47:38Z","relation":"main_file","content_type":"application/pdf","creator":"system","file_id":"5109","date_created":"2018-12-12T10:14:54Z","checksum":"8fdddaab1f1d76a6ec9ca94dcb6b07a2","file_size":2248814,"file_name":"IST-2017-900-v1+1_1-s2.0-S2211124717305211-main.pdf"}],"corr_author":"1","publisher":"Cell Press","language":[{"iso":"eng"}],"month":"05","_id":"672","page":"902 - 909","date_updated":"2025-09-10T14:27:34Z","citation":{"chicago":"Vaahtomeri, Kari, Markus Brown, Robert Hauschild, Ingrid de Vries, Alexander F Leithner, Matthias Mehling, Walter Kaufmann, and Michael K Sixt. “Locally Triggered Release of the Chemokine CCL21 Promotes Dendritic Cell Transmigration across Lymphatic Endothelia.” <i>Cell Reports</i>. Cell Press, 2017. <a href=\"https://doi.org/10.1016/j.celrep.2017.04.027\">https://doi.org/10.1016/j.celrep.2017.04.027</a>.","short":"K. Vaahtomeri, M. Brown, R. Hauschild, I. de Vries, A.F. Leithner, M. Mehling, W. Kaufmann, M.K. Sixt, Cell Reports 19 (2017) 902–909.","apa":"Vaahtomeri, K., Brown, M., Hauschild, R., de Vries, I., Leithner, A. F., Mehling, M., … Sixt, M. K. (2017). Locally triggered release of the chemokine CCL21 promotes dendritic cell transmigration across lymphatic endothelia. <i>Cell Reports</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.celrep.2017.04.027\">https://doi.org/10.1016/j.celrep.2017.04.027</a>","ista":"Vaahtomeri K, Brown M, Hauschild R, de Vries I, Leithner AF, Mehling M, Kaufmann W, Sixt MK. 2017. Locally triggered release of the chemokine CCL21 promotes dendritic cell transmigration across lymphatic endothelia. Cell Reports. 19(5), 902–909.","ama":"Vaahtomeri K, Brown M, Hauschild R, et al. Locally triggered release of the chemokine CCL21 promotes dendritic cell transmigration across lymphatic endothelia. <i>Cell Reports</i>. 2017;19(5):902-909. doi:<a href=\"https://doi.org/10.1016/j.celrep.2017.04.027\">10.1016/j.celrep.2017.04.027</a>","mla":"Vaahtomeri, Kari, et al. “Locally Triggered Release of the Chemokine CCL21 Promotes Dendritic Cell Transmigration across Lymphatic Endothelia.” <i>Cell Reports</i>, vol. 19, no. 5, Cell Press, 2017, pp. 902–09, doi:<a href=\"https://doi.org/10.1016/j.celrep.2017.04.027\">10.1016/j.celrep.2017.04.027</a>.","ieee":"K. Vaahtomeri <i>et al.</i>, “Locally triggered release of the chemokine CCL21 promotes dendritic cell transmigration across lymphatic endothelia,” <i>Cell Reports</i>, vol. 19, no. 5. Cell Press, pp. 902–909, 2017."},"date_created":"2018-12-11T11:47:50Z","volume":19,"abstract":[{"lang":"eng","text":"Trafficking cells frequently transmigrate through epithelial and endothelial monolayers. How monolayers cooperate with the penetrating cells to support their transit is poorly understood. We studied dendritic cell (DC) entry into lymphatic capillaries as a model system for transendothelial migration. We find that the chemokine CCL21, which is the decisive guidance cue for intravasation, mainly localizes in the trans-Golgi network and intracellular vesicles of lymphatic endothelial cells. Upon DC transmigration, these Golgi deposits disperse and CCL21 becomes extracellularly enriched at the sites of endothelial cell-cell junctions. When we reconstitute the transmigration process in vitro, we find that secretion of CCL21-positive vesicles is triggered by a DC contact-induced calcium signal, and selective calcium chelation in lymphatic endothelium attenuates transmigration. Altogether, our data demonstrate a chemokine-mediated feedback between DCs and lymphatic endothelium, which facilitates transendothelial migration."}],"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","oa_version":"Published Version","intvolume":"        19","scopus_import":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"external_id":{"isi":["000402124100002"]},"pubrep_id":"900","oa":1,"file_date_updated":"2020-07-14T12:47:38Z","issue":"5","doi":"10.1016/j.celrep.2017.04.027","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","department":[{"_id":"MiSi"},{"_id":"Bio"},{"_id":"EM-Fac"}],"day":"02","project":[{"call_identifier":"FP7","_id":"25A603A2-B435-11E9-9278-68D0E5697425","grant_number":"281556","name":"Cytoskeletal force generation and force transduction of migrating leukocytes"},{"name":"Cytoskeletal force generation and force transduction of migrating leukocytes","call_identifier":"FWF","grant_number":"Y 564-B12","_id":"25A8E5EA-B435-11E9-9278-68D0E5697425"}],"publication_status":"published","status":"public"}]