---
_id: '15146'
abstract:
- lang: eng
  text: The extracellular matrix (ECM) serves as a scaffold for cells and plays an
    essential role in regulating numerous cellular processes, including cell migration
    and proliferation. Due to limitations in specimen preparation for conventional
    room-temperature electron microscopy, we lack structural knowledge on how ECM
    components are secreted, remodeled, and interact with surrounding cells. We have
    developed a 3D-ECM platform compatible with sample thinning by cryo-focused ion
    beam milling, the lift-out extraction procedure, and cryo-electron tomography.
    Our workflow implements cell-derived matrices (CDMs) grown on EM grids, resulting
    in a versatile tool closely mimicking ECM environments. This allows us to visualize
    ECM for the first time in its hydrated, native context. Our data reveal an intricate
    network of extracellular fibers, their positioning relative to matrix-secreting
    cells, and previously unresolved structural entities. Our workflow and results
    add to the structural atlas of the ECM, providing novel insights into its secretion
    and assembly.
acknowledged_ssus:
- _id: LifeSc
- _id: ScienComp
- _id: EM-Fac
- _id: M-Shop
acknowledgement: "Open Access funding provided by IST Austria. We thank Armel Nicolas
  and his team at the ISTA proteomics facility, Alois Schloegl, Stefano Elefante,
  and colleagues at the ISTA Scientific Computing facility, Tommaso Constanzo and
  Ludek Lovicar at the Electron Microsocpy Facility (EMF), and Thomas Menner at the
  Miba Machine shop for their support. We also thank Wanda Kukulski (University of
  Bern) as well as Darío Porley, Andreas Thader, and other members of the Schur group
  for helpful discussions. Matt Swulius and Jessica Heebner provided great support
  in using Dragonfly. We thank Dorotea Fracciolla (Art & Science) for support in figure
  illustration.\r\n\r\nThis research was supported by the Scientific Service Units
  of ISTA through resources provided by Scientific Computing, the Lab Support Facility,
  and the Electron Microscopy Facility. We acknowledge funding support from the following
  sources: Austrian Science Fund (FWF) grant P33367 (to F.K.M. Schur), the Federation
  of European Biochemical Societies (to F.K.M. Schur), Niederösterreich (NÖ) Fonds
  (to B. Zens), FWF grant E435 (to J.M. Hansen), European Research Council under the
  European Union’s Horizon 2020 research (grant agreement No. 724373) (to M. Sixt),
  and Jenny and Antti Wihuri Foundation (to J. Alanko). This publication has been
  made possible in part by CZI grant DAF2021-234754 and grant DOI https://doi.org/10.37921/812628ebpcwg
  from the Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community
  Foundation (to F.K.M. Schur)."
article_number: e202309125
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Bettina
  full_name: Zens, Bettina
  id: 45FD126C-F248-11E8-B48F-1D18A9856A87
  last_name: Zens
  orcid: 0000-0002-9561-1239
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Jesse
  full_name: Hansen, Jesse
  id: 1063c618-6f9b-11ec-9123-f912fccded63
  last_name: Hansen
  orcid: 0000-0001-7967-2085
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Julia
  full_name: Datler, Julia
  id: 3B12E2E6-F248-11E8-B48F-1D18A9856A87
  last_name: Datler
  orcid: 0000-0002-3616-8580
- first_name: Victor-Valentin
  full_name: Hodirnau, Victor-Valentin
  id: 3661B498-F248-11E8-B48F-1D18A9856A87
  last_name: Hodirnau
  orcid: 0000-0003-3904-947X
- first_name: Vanessa
  full_name: Zheden, Vanessa
  id: 39C5A68A-F248-11E8-B48F-1D18A9856A87
  last_name: Zheden
  orcid: 0000-0002-9438-4783
- first_name: Jonna H
  full_name: Alanko, Jonna H
  id: 2CC12E8C-F248-11E8-B48F-1D18A9856A87
  last_name: Alanko
  orcid: 0000-0002-7698-3061
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
citation:
  ama: Zens B, Fäßler F, Hansen J, et al. Lift-out cryo-FIBSEM and cryo-ET reveal
    the ultrastructural landscape of extracellular matrix. <i>Journal of Cell Biology</i>.
    2024;223(6). doi:<a href="https://doi.org/10.1083/jcb.202309125">10.1083/jcb.202309125</a>
  apa: Zens, B., Fäßler, F., Hansen, J., Hauschild, R., Datler, J., Hodirnau, V.-V.,
    … Schur, F. K. (2024). Lift-out cryo-FIBSEM and cryo-ET reveal the ultrastructural
    landscape of extracellular matrix. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.202309125">https://doi.org/10.1083/jcb.202309125</a>
  chicago: Zens, Bettina, Florian Fäßler, Jesse Hansen, Robert Hauschild, Julia Datler,
    Victor-Valentin Hodirnau, Vanessa Zheden, Jonna H Alanko, Michael K Sixt, and
    Florian KM Schur. “Lift-out Cryo-FIBSEM and Cryo-ET Reveal the Ultrastructural
    Landscape of Extracellular Matrix.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2024. <a href="https://doi.org/10.1083/jcb.202309125">https://doi.org/10.1083/jcb.202309125</a>.
  ieee: B. Zens <i>et al.</i>, “Lift-out cryo-FIBSEM and cryo-ET reveal the ultrastructural
    landscape of extracellular matrix,” <i>Journal of Cell Biology</i>, vol. 223,
    no. 6. Rockefeller University Press, 2024.
  ista: Zens B, Fäßler F, Hansen J, Hauschild R, Datler J, Hodirnau V-V, Zheden V,
    Alanko JH, Sixt MK, Schur FK. 2024. Lift-out cryo-FIBSEM and cryo-ET reveal the
    ultrastructural landscape of extracellular matrix. Journal of Cell Biology. 223(6),
    e202309125.
  mla: Zens, Bettina, et al. “Lift-out Cryo-FIBSEM and Cryo-ET Reveal the Ultrastructural
    Landscape of Extracellular Matrix.” <i>Journal of Cell Biology</i>, vol. 223,
    no. 6, e202309125, Rockefeller University Press, 2024, doi:<a href="https://doi.org/10.1083/jcb.202309125">10.1083/jcb.202309125</a>.
  short: B. Zens, F. Fäßler, J. Hansen, R. Hauschild, J. Datler, V.-V. Hodirnau, V.
    Zheden, J.H. Alanko, M.K. Sixt, F.K. Schur, Journal of Cell Biology 223 (2024).
corr_author: '1'
date_created: 2024-03-21T06:45:51Z
date_published: 2024-03-20T00:00:00Z
date_updated: 2025-09-04T13:17:16Z
day: '20'
ddc:
- '570'
department:
- _id: FlSc
- _id: MiSi
- _id: Bio
- _id: EM-Fac
doi: 10.1083/jcb.202309125
ec_funded: 1
external_id:
  isi:
  - '001264190100001'
  pmid:
  - '38506714'
file:
- access_level: open_access
  checksum: 90d1984a93660735e506c2a304bc3f73
  content_type: application/pdf
  creator: dernst
  date_created: 2024-03-25T12:52:04Z
  date_updated: 2024-03-25T12:52:04Z
  file_id: '15188'
  file_name: 2024_JCB_Zens.pdf
  file_size: 11907016
  relation: main_file
  success: 1
file_date_updated: 2024-03-25T12:52:04Z
has_accepted_license: '1'
intvolume: '       223'
isi: 1
issue: '6'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A
  grant_number: P33367
  name: Structure and isoform diversity of the Arp2/3 complex
- _id: 7bd318a1-9f16-11ee-852c-cc9217763180
  grant_number: E435
  name: In Situ Actin Structures via Hybrid Cryo-electron Microscopy
- _id: 25FE9508-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '724373'
  name: Cellular Navigation Along Spatial Gradients
- _id: 059B463C-7A3F-11EA-A408-12923DDC885E
  name: "NÃ\x96-Fonds Preis fÃ¼r die Jungforscherin des Jahres am IST Austria"
- _id: 2615199A-B435-11E9-9278-68D0E5697425
  grant_number: '21317'
  name: Spatiotemporal regulation of chemokine-induced signalling in leukocyte chemotaxis
- _id: 62909c6f-2b32-11ec-9570-e1476aab5308
  grant_number: CZI01
  name: CryoMinflux-guided in-situ visual proteomics and structure determination
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Lift-out cryo-FIBSEM and cryo-ET reveal the ultrastructural landscape of extracellular
  matrix
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 223
year: '2024'
...
---
_id: '14788'
abstract:
- lang: eng
  text: "Eukaryotic cells use clathrin-mediated endocytosis to take up a large range
    of extracellular cargo. During endocytosis, a clathrin coat forms on the plasma
    membrane, but it remains controversial when and how it is remodeled into a spherical
    vesicle.\r\nHere, we use 3D superresolution microscopy to determine the precise
    geometry of the clathrin coat at large numbers of endocytic sites. Through pseudo-temporal
    sorting, we determine the average trajectory of clathrin remodeling during endocytosis.
    We find that clathrin coats assemble first on flat membranes to 50% of the coat
    area before they become rapidly and continuously bent, and this mechanism is confirmed
    in three cell lines. We introduce the cooperative curvature model, which is based
    on positive feedback for curvature generation. It accurately describes the measured
    shapes and dynamics of the clathrin coat and could represent a general mechanism
    for clathrin coat remodeling on the plasma membrane."
acknowledgement: We thank the entire Ries and Kaksonen labs for fruitful discussions
  and support. This work was supported by the European Research Council (ERC CoG-724489
  to J. Ries), the National Institutes of Health Common Fund 4D Nucleome Program (Grant
  U01 to J. Ries), the Human Frontier Science Program (RGY0065/2017 to J. Ries), the
  EMBL Interdisciplinary Postdoc Programme (EIPOD) under Marie Curie Actions COFUND
  (Grant 229597 to O. Avinoam), the European Molecular Biology Laboratory (M. Mund,
  A. Tschanz, Y.-L. Wu and J. Ries), and the Swiss National Science Foundation (grant
  310030B_182825 and NCCR Chemical Biology to M. Kaksonen). O. Avinoam is an incumbent
  of the Miriam Berman Presidential Development Chair.
article_number: e202206038
article_processing_charge: No
article_type: original
author:
- first_name: Markus
  full_name: Mund, Markus
  last_name: Mund
- first_name: Aline
  full_name: Tschanz, Aline
  last_name: Tschanz
- first_name: Yu-Le
  full_name: Wu, Yu-Le
  last_name: Wu
- first_name: Felix F
  full_name: Frey, Felix F
  id: a0270b37-8f1a-11ec-95c7-8e710c59a4f3
  last_name: Frey
  orcid: 0000-0001-8501-6017
- first_name: Johanna L.
  full_name: Mehl, Johanna L.
  last_name: Mehl
- first_name: Marko
  full_name: Kaksonen, Marko
  last_name: Kaksonen
- first_name: Ori
  full_name: Avinoam, Ori
  last_name: Avinoam
- first_name: Ulrich S.
  full_name: Schwarz, Ulrich S.
  last_name: Schwarz
- first_name: Jonas
  full_name: Ries, Jonas
  last_name: Ries
citation:
  ama: Mund M, Tschanz A, Wu Y-L, et al. Clathrin coats partially preassemble and
    subsequently bend during endocytosis. <i>Journal of Cell Biology</i>. 2023;222(3).
    doi:<a href="https://doi.org/10.1083/jcb.202206038">10.1083/jcb.202206038</a>
  apa: Mund, M., Tschanz, A., Wu, Y.-L., Frey, F. F., Mehl, J. L., Kaksonen, M., …
    Ries, J. (2023). Clathrin coats partially preassemble and subsequently bend during
    endocytosis. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a
    href="https://doi.org/10.1083/jcb.202206038">https://doi.org/10.1083/jcb.202206038</a>
  chicago: Mund, Markus, Aline Tschanz, Yu-Le Wu, Felix F Frey, Johanna L. Mehl, Marko
    Kaksonen, Ori Avinoam, Ulrich S. Schwarz, and Jonas Ries. “Clathrin Coats Partially
    Preassemble and Subsequently Bend during Endocytosis.” <i>Journal of Cell Biology</i>.
    Rockefeller University Press, 2023. <a href="https://doi.org/10.1083/jcb.202206038">https://doi.org/10.1083/jcb.202206038</a>.
  ieee: M. Mund <i>et al.</i>, “Clathrin coats partially preassemble and subsequently
    bend during endocytosis,” <i>Journal of Cell Biology</i>, vol. 222, no. 3. Rockefeller
    University Press, 2023.
  ista: Mund M, Tschanz A, Wu Y-L, Frey FF, Mehl JL, Kaksonen M, Avinoam O, Schwarz
    US, Ries J. 2023. Clathrin coats partially preassemble and subsequently bend during
    endocytosis. Journal of Cell Biology. 222(3), e202206038.
  mla: Mund, Markus, et al. “Clathrin Coats Partially Preassemble and Subsequently
    Bend during Endocytosis.” <i>Journal of Cell Biology</i>, vol. 222, no. 3, e202206038,
    Rockefeller University Press, 2023, doi:<a href="https://doi.org/10.1083/jcb.202206038">10.1083/jcb.202206038</a>.
  short: M. Mund, A. Tschanz, Y.-L. Wu, F.F. Frey, J.L. Mehl, M. Kaksonen, O. Avinoam,
    U.S. Schwarz, J. Ries, Journal of Cell Biology 222 (2023).
date_created: 2024-01-10T10:45:55Z
date_published: 2023-02-03T00:00:00Z
date_updated: 2024-01-16T10:17:05Z
day: '03'
ddc:
- '570'
department:
- _id: AnSa
doi: 10.1083/jcb.202206038
external_id:
  isi:
  - '000978065000001'
  pmid:
  - '36734980'
file:
- access_level: open_access
  checksum: 505d5cac36c14b073b68c7fed1a92bd3
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-16T10:15:09Z
  date_updated: 2024-01-16T10:15:09Z
  file_id: '14811'
  file_name: 2023_JCB_Mund.pdf
  file_size: 5678069
  relation: main_file
  success: 1
file_date_updated: 2024-01-16T10:15:09Z
has_accepted_license: '1'
intvolume: '       222'
isi: 1
issue: '3'
keyword:
- Cell Biology
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
status: public
title: Clathrin coats partially preassemble and subsequently bend during endocytosis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 222
year: '2023'
...
---
_id: '12121'
abstract:
- lang: eng
  text: Autophagosomes are double-membraned vesicles that traffic harmful or unwanted
    cellular macromolecules to the vacuole for recycling. Although autophagosome biogenesis
    has been extensively studied, autophagosome maturation, i.e., delivery and fusion
    with the vacuole, remains largely unknown in plants. Here, we have identified
    an autophagy adaptor, CFS1, that directly interacts with the autophagosome marker
    ATG8 and localizes on both membranes of the autophagosome. Autophagosomes form
    normally in Arabidopsis thaliana cfs1 mutants, but their delivery to the vacuole
    is disrupted. CFS1’s function is evolutionarily conserved in plants, as it also
    localizes to the autophagosomes and plays a role in autophagic flux in the liverwort
    Marchantia polymorpha. CFS1 regulates autophagic flux by bridging autophagosomes
    with the multivesicular body-localized ESCRT-I component VPS23A, leading to the
    formation of amphisomes. Similar to CFS1-ATG8 interaction, disrupting the CFS1-VPS23A
    interaction blocks autophagic flux and renders plants sensitive to nitrogen starvation.
    Altogether, our results reveal a conserved vacuolar sorting hub that regulates
    autophagic flux in plants.
acknowledgement: "We thank Suayip Ustün, Karin Schumacher, Erika Isono, Gerd Juergens,
  Takashi Ueda, Daniel Hofius, and Liwen Jiang for sharing published materials.\r\nWe
  acknowledge funding from Austrian Academy of Sciences, Austrian Science Fund (FWF,
  P 32355, P 34944), Austrian Science Fund (FWF-SFB F79), Vienna Science and Technology\r\nFund
  (WWTF, LS17-047) to Y. Dagdas; Austrian Academy of Sciences DOC Fellowship to J.
  Zhao, Marie Curie VIP2 Fellowship to J.C. De La Concepcion and M. Clavel; Hong Kong
  Research Grant Council (GRF14121019, 14113921, AoE/M-05/12, C4002-17G) to B.-H.
  Kang. We thank Vienna Biocenter Core Facilities (VBCF) Protein Chemistry, Biooptics,
  Plant Sciences, Molecular Biology, and Protein Technologies. We thank J. Matthew
  Watson\r\nand members of the Dagdas lab for the critical reading and editing of
  the manuscript."
article_number: e202203139
article_processing_charge: No
article_type: original
author:
- first_name: Jierui
  full_name: Zhao, Jierui
  last_name: Zhao
- first_name: Mai Thu
  full_name: Bui, Mai Thu
  last_name: Bui
- first_name: Juncai
  full_name: Ma, Juncai
  last_name: Ma
- first_name: Fabian
  full_name: Künzl, Fabian
  last_name: Künzl
- first_name: Lorenzo
  full_name: Picchianti, Lorenzo
  last_name: Picchianti
- first_name: Juan Carlos
  full_name: De La Concepcion, Juan Carlos
  last_name: De La Concepcion
- first_name: Yixuan
  full_name: Chen, Yixuan
  last_name: Chen
- first_name: Sofia
  full_name: Petsangouraki, Sofia
  last_name: Petsangouraki
- first_name: Azadeh
  full_name: Mohseni, Azadeh
  last_name: Mohseni
- first_name: Marta
  full_name: García-Leon, Marta
  last_name: García-Leon
- first_name: Marta Salas
  full_name: Gomez, Marta Salas
  last_name: Gomez
- first_name: Caterina
  full_name: Giannini, Caterina
  id: e3fdddd5-f6e0-11ea-865d-ca99ee6367f4
  last_name: Giannini
- first_name: Dubois
  full_name: Gwennogan, Dubois
  last_name: Gwennogan
- first_name: Roksolana
  full_name: Kobylinska, Roksolana
  last_name: Kobylinska
- first_name: Marion
  full_name: Clavel, Marion
  last_name: Clavel
- first_name: Swen
  full_name: Schellmann, Swen
  last_name: Schellmann
- first_name: Yvon
  full_name: Jaillais, Yvon
  last_name: Jaillais
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Byung-Ho
  full_name: Kang, Byung-Ho
  last_name: Kang
- first_name: Yasin
  full_name: Dagdas, Yasin
  last_name: Dagdas
citation:
  ama: Zhao J, Bui MT, Ma J, et al. Plant autophagosomes mature into amphisomes prior
    to their delivery to the central vacuole. <i>Journal of Cell Biology</i>. 2022;221(12).
    doi:<a href="https://doi.org/10.1083/jcb.202203139">10.1083/jcb.202203139</a>
  apa: Zhao, J., Bui, M. T., Ma, J., Künzl, F., Picchianti, L., De La Concepcion,
    J. C., … Dagdas, Y. (2022). Plant autophagosomes mature into amphisomes prior
    to their delivery to the central vacuole. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.202203139">https://doi.org/10.1083/jcb.202203139</a>
  chicago: Zhao, Jierui, Mai Thu Bui, Juncai Ma, Fabian Künzl, Lorenzo Picchianti,
    Juan Carlos De La Concepcion, Yixuan Chen, et al. “Plant Autophagosomes Mature
    into Amphisomes Prior to Their Delivery to the Central Vacuole.” <i>Journal of
    Cell Biology</i>. Rockefeller University Press, 2022. <a href="https://doi.org/10.1083/jcb.202203139">https://doi.org/10.1083/jcb.202203139</a>.
  ieee: J. Zhao <i>et al.</i>, “Plant autophagosomes mature into amphisomes prior
    to their delivery to the central vacuole,” <i>Journal of Cell Biology</i>, vol.
    221, no. 12. Rockefeller University Press, 2022.
  ista: Zhao J, Bui MT, Ma J, Künzl F, Picchianti L, De La Concepcion JC, Chen Y,
    Petsangouraki S, Mohseni A, García-Leon M, Gomez MS, Giannini C, Gwennogan D,
    Kobylinska R, Clavel M, Schellmann S, Jaillais Y, Friml J, Kang B-H, Dagdas Y.
    2022. Plant autophagosomes mature into amphisomes prior to their delivery to the
    central vacuole. Journal of Cell Biology. 221(12), e202203139.
  mla: Zhao, Jierui, et al. “Plant Autophagosomes Mature into Amphisomes Prior to
    Their Delivery to the Central Vacuole.” <i>Journal of Cell Biology</i>, vol. 221,
    no. 12, e202203139, Rockefeller University Press, 2022, doi:<a href="https://doi.org/10.1083/jcb.202203139">10.1083/jcb.202203139</a>.
  short: J. Zhao, M.T. Bui, J. Ma, F. Künzl, L. Picchianti, J.C. De La Concepcion,
    Y. Chen, S. Petsangouraki, A. Mohseni, M. García-Leon, M.S. Gomez, C. Giannini,
    D. Gwennogan, R. Kobylinska, M. Clavel, S. Schellmann, Y. Jaillais, J. Friml,
    B.-H. Kang, Y. Dagdas, Journal of Cell Biology 221 (2022).
date_created: 2023-01-12T11:57:10Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2023-08-03T14:20:15Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1083/jcb.202203139
external_id:
  isi:
  - '000932958800001'
  pmid:
  - '36260289'
file:
- access_level: open_access
  checksum: 050b5cc4b25e6b94fe3e3cbfe0f5c06b
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-23T10:30:11Z
  date_updated: 2023-01-23T10:30:11Z
  file_id: '12342'
  file_name: 2022_JCB_Zhao.pdf
  file_size: 10365777
  relation: main_file
  success: 1
file_date_updated: 2023-01-23T10:30:11Z
has_accepted_license: '1'
intvolume: '       221'
isi: 1
issue: '12'
keyword:
- Cell Biology
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Plant autophagosomes mature into amphisomes prior to their delivery to the
  central vacuole
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 221
year: '2022'
...
---
_id: '12122'
abstract:
- lang: eng
  text: Centrosomes play a crucial role during immune cell interactions and initiation
    of the immune response. In proliferating cells, centrosome numbers are tightly
    controlled and generally limited to one in G1 and two prior to mitosis. Defects
    in regulating centrosome numbers have been associated with cell transformation
    and tumorigenesis. Here, we report the emergence of extra centrosomes in leukocytes
    during immune activation. Upon antigen encounter, dendritic cells pass through
    incomplete mitosis and arrest in the subsequent G1 phase leading to tetraploid
    cells with accumulated centrosomes. In addition, cell stimulation increases expression
    of polo-like kinase 2, resulting in diploid cells with two centrosomes in G1-arrested
    cells. During cell migration, centrosomes tightly cluster and act as functional
    microtubule-organizing centers allowing for increased persistent locomotion along
    gradients of chemotactic cues. Moreover, dendritic cells with extra centrosomes
    display enhanced secretion of inflammatory cytokines and optimized T cell responses.
    Together, these results demonstrate a previously unappreciated role of extra centrosomes
    for regular cell and tissue homeostasis.
acknowledgement: "We thank Markéta Dalecká and Irena Krejzová for their support with
  FIB-SEM imaging, the Imaging Methods Core Facility at BIOCEV supported by the Ministry
  of Education, Youth and Sports Czech Republic (Large RI Project LM2018129 Czech-BioImaging),
  and European Regional Development Fund (project No. CZ.02.1.01/0.0/0.0/18_046/0016045)
  for their support with obtaining imaging data presented in this paper. The authors
  further thank Andreas Villunger, Florian Gärtner, Frank Bradke, and Sarah Förster
  for helpful discussions; Andy Zielinski for help with statistics; and Björn Weiershausen
  for assisting with figure illustration.\r\n\r\nThis work was funded by a fellowship
  of the Ministry of Innovation, Science and Research of North-Rhine-Westphalia (AZ:
  421-8.03.03.02-137069) to E. Kiermaier and the Deutsche Forschungsgemeinschaft (German
  Research Foundation) under Germany’s Excellence Strategy – EXC 2151 – 390873048.
  R. Hauschild was funded by grant number 2020-225401 from the Chan Zuckerberg Initiative
  Donor-Advised Fund, an advised fund of Silicon Valley Community Foundation. M. Hons
  is supported by Czech Science Foundation GACR 20-24603Y and Charles University PRIMUS/20/MED/013."
article_number: e202107134
article_processing_charge: No
article_type: original
author:
- first_name: Ann-Kathrin
  full_name: Weier, Ann-Kathrin
  last_name: Weier
- first_name: Mirka
  full_name: Homrich, Mirka
  last_name: Homrich
- first_name: Stephanie
  full_name: Ebbinghaus, Stephanie
  last_name: Ebbinghaus
- first_name: Pavel
  full_name: Juda, Pavel
  last_name: Juda
- first_name: Eliška
  full_name: Miková, Eliška
  last_name: Miková
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Lili
  full_name: Zhang, Lili
  last_name: Zhang
- first_name: Thomas
  full_name: Quast, Thomas
  last_name: Quast
- first_name: Elvira
  full_name: Mass, Elvira
  last_name: Mass
- first_name: Andreas
  full_name: Schlitzer, Andreas
  last_name: Schlitzer
- first_name: Waldemar
  full_name: Kolanus, Waldemar
  last_name: Kolanus
- first_name: Sven
  full_name: Burgdorf, Sven
  last_name: Burgdorf
- first_name: Oliver J.
  full_name: Gruß, Oliver J.
  last_name: Gruß
- first_name: Miroslav
  full_name: Hons, Miroslav
  last_name: Hons
- first_name: Stefan
  full_name: Wieser, Stefan
  last_name: Wieser
- first_name: Eva
  full_name: Kiermaier, Eva
  last_name: Kiermaier
citation:
  ama: Weier A-K, Homrich M, Ebbinghaus S, et al. Multiple centrosomes enhance migration
    and immune cell effector functions of mature dendritic cells. <i>Journal of Cell
    Biology</i>. 2022;221(12). doi:<a href="https://doi.org/10.1083/jcb.202107134">10.1083/jcb.202107134</a>
  apa: Weier, A.-K., Homrich, M., Ebbinghaus, S., Juda, P., Miková, E., Hauschild,
    R., … Kiermaier, E. (2022). Multiple centrosomes enhance migration and immune
    cell effector functions of mature dendritic cells. <i>Journal of Cell Biology</i>.
    Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.202107134">https://doi.org/10.1083/jcb.202107134</a>
  chicago: Weier, Ann-Kathrin, Mirka Homrich, Stephanie Ebbinghaus, Pavel Juda, Eliška
    Miková, Robert Hauschild, Lili Zhang, et al. “Multiple Centrosomes Enhance Migration
    and Immune Cell Effector Functions of Mature Dendritic Cells.” <i>Journal of Cell
    Biology</i>. Rockefeller University Press, 2022. <a href="https://doi.org/10.1083/jcb.202107134">https://doi.org/10.1083/jcb.202107134</a>.
  ieee: A.-K. Weier <i>et al.</i>, “Multiple centrosomes enhance migration and immune
    cell effector functions of mature dendritic cells,” <i>Journal of Cell Biology</i>,
    vol. 221, no. 12. Rockefeller University Press, 2022.
  ista: Weier A-K, Homrich M, Ebbinghaus S, Juda P, Miková E, Hauschild R, Zhang L,
    Quast T, Mass E, Schlitzer A, Kolanus W, Burgdorf S, Gruß OJ, Hons M, Wieser S,
    Kiermaier E. 2022. Multiple centrosomes enhance migration and immune cell effector
    functions of mature dendritic cells. Journal of Cell Biology. 221(12), e202107134.
  mla: Weier, Ann-Kathrin, et al. “Multiple Centrosomes Enhance Migration and Immune
    Cell Effector Functions of Mature Dendritic Cells.” <i>Journal of Cell Biology</i>,
    vol. 221, no. 12, e202107134, Rockefeller University Press, 2022, doi:<a href="https://doi.org/10.1083/jcb.202107134">10.1083/jcb.202107134</a>.
  short: A.-K. Weier, M. Homrich, S. Ebbinghaus, P. Juda, E. Miková, R. Hauschild,
    L. Zhang, T. Quast, E. Mass, A. Schlitzer, W. Kolanus, S. Burgdorf, O.J. Gruß,
    M. Hons, S. Wieser, E. Kiermaier, Journal of Cell Biology 221 (2022).
date_created: 2023-01-12T12:01:09Z
date_published: 2022-12-05T00:00:00Z
date_updated: 2025-04-15T08:37:41Z
day: '05'
ddc:
- '570'
department:
- _id: Bio
doi: 10.1083/jcb.202107134
external_id:
  isi:
  - '000932941400001'
  pmid:
  - '36214847 '
file:
- access_level: open_access
  checksum: 0c9af38f82af30c6ce528f2caece4246
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-16T11:24:53Z
  date_updated: 2023-08-16T11:24:53Z
  file_id: '14065'
  file_name: 2023_JCB_Weier.pdf
  file_size: 11090179
  relation: main_file
  success: 1
file_date_updated: 2023-08-16T11:24:53Z
has_accepted_license: '1'
intvolume: '       221'
isi: 1
issue: '12'
keyword:
- Cell Biology
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: c08e9ad1-5a5b-11eb-8a69-9d1cf3b07473
  grant_number: CZI01
  name: Tools for automation and feedback microscopy
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multiple centrosomes enhance migration and immune cell effector functions of
  mature dendritic cells
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 221
year: '2022'
...
---
_id: '12080'
abstract:
- lang: eng
  text: 'Endocytosis is a multistep process involving the sequential recruitment and
    action of numerous proteins. This process can be divided into two phases: an early
    phase, in which sites of endocytosis are formed, and a late phase in which clathrin-coated
    vesicles are formed and internalized into the cytosol, but how these phases link
    to each other remains unclear. In this study, we demonstrate that anchoring the
    yeast Eps15-like protein Pan1p to the peroxisome triggers most of the events occurring
    during the late phase at the peroxisome. At this ectopic location, Pan1p recruits
    most proteins that function in the late phases—including actin nucleation promoting
    factors—and then initiates actin polymerization. Pan1p also recruited Prk1 kinase
    and actin depolymerizing factors, thereby triggering disassembly immediately after
    actin assembly and inducing dissociation of endocytic proteins from the peroxisome.
    These observations suggest that Pan1p is a key regulator for initiating, processing,
    and completing the late phase of endocytosis.'
acknowledgement: 'This work was supported by JSPS KAKENHI GRANT #18K062291, and the
  Takeda Science Foundation to J.Y. Toshima, as well as JSPS KAKENHI GRANT #19K065710,
  the Uehara Memorial Foundation, and Life Science Foundation of JAPAN to J. Toshima.'
article_number: e202112138
article_processing_charge: No
article_type: original
author:
- first_name: Mariko
  full_name: Enshoji, Mariko
  last_name: Enshoji
- first_name: Yoshiko
  full_name: Miyano, Yoshiko
  last_name: Miyano
- first_name: Nao
  full_name: Yoshida, Nao
  last_name: Yoshida
- first_name: Makoto
  full_name: Nagano, Makoto
  last_name: Nagano
- first_name: Minami
  full_name: Watanabe, Minami
  last_name: Watanabe
- first_name: Mayumi
  full_name: Kunihiro, Mayumi
  last_name: Kunihiro
- first_name: Daria E
  full_name: Siekhaus, Daria E
  id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
  last_name: Siekhaus
  orcid: 0000-0001-8323-8353
- first_name: Junko Y.
  full_name: Toshima, Junko Y.
  last_name: Toshima
- first_name: Jiro
  full_name: Toshima, Jiro
  last_name: Toshima
citation:
  ama: Enshoji M, Miyano Y, Yoshida N, et al. Eps15/Pan1p is a master regulator of
    the late stages of the endocytic pathway. <i>Journal of Cell Biology</i>. 2022;221(10).
    doi:<a href="https://doi.org/10.1083/jcb.202112138">10.1083/jcb.202112138</a>
  apa: Enshoji, M., Miyano, Y., Yoshida, N., Nagano, M., Watanabe, M., Kunihiro, M.,
    … Toshima, J. (2022). Eps15/Pan1p is a master regulator of the late stages of
    the endocytic pathway. <i>Journal of Cell Biology</i>. Rockefeller University
    Press. <a href="https://doi.org/10.1083/jcb.202112138">https://doi.org/10.1083/jcb.202112138</a>
  chicago: Enshoji, Mariko, Yoshiko Miyano, Nao Yoshida, Makoto Nagano, Minami Watanabe,
    Mayumi Kunihiro, Daria E Siekhaus, Junko Y. Toshima, and Jiro Toshima. “Eps15/Pan1p
    Is a Master Regulator of the Late Stages of the Endocytic Pathway.” <i>Journal
    of Cell Biology</i>. Rockefeller University Press, 2022. <a href="https://doi.org/10.1083/jcb.202112138">https://doi.org/10.1083/jcb.202112138</a>.
  ieee: M. Enshoji <i>et al.</i>, “Eps15/Pan1p is a master regulator of the late stages
    of the endocytic pathway,” <i>Journal of Cell Biology</i>, vol. 221, no. 10. Rockefeller
    University Press, 2022.
  ista: Enshoji M, Miyano Y, Yoshida N, Nagano M, Watanabe M, Kunihiro M, Siekhaus
    DE, Toshima JY, Toshima J. 2022. Eps15/Pan1p is a master regulator of the late
    stages of the endocytic pathway. Journal of Cell Biology. 221(10), e202112138.
  mla: Enshoji, Mariko, et al. “Eps15/Pan1p Is a Master Regulator of the Late Stages
    of the Endocytic Pathway.” <i>Journal of Cell Biology</i>, vol. 221, no. 10, e202112138,
    Rockefeller University Press, 2022, doi:<a href="https://doi.org/10.1083/jcb.202112138">10.1083/jcb.202112138</a>.
  short: M. Enshoji, Y. Miyano, N. Yoshida, M. Nagano, M. Watanabe, M. Kunihiro, D.E.
    Siekhaus, J.Y. Toshima, J. Toshima, Journal of Cell Biology 221 (2022).
date_created: 2022-09-11T22:01:54Z
date_published: 2022-08-19T00:00:00Z
date_updated: 2023-08-03T13:49:07Z
day: '19'
ddc:
- '570'
department:
- _id: DaSi
doi: 10.1083/jcb.202112138
external_id:
  isi:
  - '000932770500001'
  pmid:
  - '35984332'
file:
- access_level: open_access
  checksum: f2e581e66b5cdab9df81b56e850b3eaa
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-20T09:32:53Z
  date_updated: 2023-02-21T23:30:39Z
  embargo: 2023-02-20
  file_id: '12321'
  file_name: 2022_JCB_Enshoji.pdf
  file_size: 7816875
  relation: main_file
file_date_updated: 2023-02-21T23:30:39Z
has_accepted_license: '1'
intvolume: '       221'
isi: 1
issue: '10'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Eps15/Pan1p is a master regulator of the late stages of the endocytic pathway
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 221
year: '2022'
...
---
_id: '12272'
abstract:
- lang: eng
  text: Reading, interpreting and crawling along gradients of chemotactic cues is
    one of the most complex questions in cell biology. In this issue, Georgantzoglou
    et al. (2022. J. Cell. Biol.https://doi.org/10.1083/jcb.202103207) use in vivo
    models to map the temporal sequence of how neutrophils respond to an acutely arising
    gradient of chemoattractant.
article_number: e202206127
article_processing_charge: No
article_type: original
author:
- first_name: Julian A
  full_name: Stopp, Julian A
  id: 489E3F00-F248-11E8-B48F-1D18A9856A87
  last_name: Stopp
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: 'Stopp JA, Sixt MK. Plan your trip before you leave: The neutrophils’ search-and-run
    journey. <i>Journal of Cell Biology</i>. 2022;221(8). doi:<a href="https://doi.org/10.1083/jcb.202206127">10.1083/jcb.202206127</a>'
  apa: 'Stopp, J. A., &#38; Sixt, M. K. (2022). Plan your trip before you leave: The
    neutrophils’ search-and-run journey. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.202206127">https://doi.org/10.1083/jcb.202206127</a>'
  chicago: 'Stopp, Julian A, and Michael K Sixt. “Plan Your Trip before You Leave:
    The Neutrophils’ Search-and-Run Journey.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2022. <a href="https://doi.org/10.1083/jcb.202206127">https://doi.org/10.1083/jcb.202206127</a>.'
  ieee: 'J. A. Stopp and M. K. Sixt, “Plan your trip before you leave: The neutrophils’
    search-and-run journey,” <i>Journal of Cell Biology</i>, vol. 221, no. 8. Rockefeller
    University Press, 2022.'
  ista: 'Stopp JA, Sixt MK. 2022. Plan your trip before you leave: The neutrophils’
    search-and-run journey. Journal of Cell Biology. 221(8), e202206127.'
  mla: 'Stopp, Julian A., and Michael K. Sixt. “Plan Your Trip before You Leave: The
    Neutrophils’ Search-and-Run Journey.” <i>Journal of Cell Biology</i>, vol. 221,
    no. 8, e202206127, Rockefeller University Press, 2022, doi:<a href="https://doi.org/10.1083/jcb.202206127">10.1083/jcb.202206127</a>.'
  short: J.A. Stopp, M.K. Sixt, Journal of Cell Biology 221 (2022).
corr_author: '1'
date_created: 2023-01-16T10:01:08Z
date_published: 2022-07-20T00:00:00Z
date_updated: 2026-04-26T22:30:26Z
day: '20'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1083/jcb.202206127
external_id:
  isi:
  - '000874717200001'
  pmid:
  - '35856919'
file:
- access_level: open_access
  checksum: 6b1620743669679b48b9389bb40f5a11
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-30T10:39:34Z
  date_updated: 2023-01-30T10:39:34Z
  file_id: '12451'
  file_name: 2022_JourCellBiology_Stopp.pdf
  file_size: 969969
  relation: main_file
  success: 1
file_date_updated: 2023-01-30T10:39:34Z
has_accepted_license: '1'
intvolume: '       221'
isi: 1
issue: '8'
keyword:
- Cell Biology
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
related_material:
  record:
  - id: '14697'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: 'Plan your trip before you leave: The neutrophils’ search-and-run journey'
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 221
year: '2022'
...
---
_id: '10337'
abstract:
- lang: eng
  text: The T cell receptor (TCR) pathway receives, processes, and amplifies the signal
    from pathogenic antigens to the activation of T cells. Although major components
    in this pathway have been identified, the knowledge on how individual components
    cooperate to effectively transduce signals remains limited. Phase separation emerges
    as a biophysical principle in organizing signaling molecules into liquid-like
    condensates. Here, we report that phospholipase Cγ1 (PLCγ1) promotes phase separation
    of LAT, a key adaptor protein in the TCR pathway. PLCγ1 directly cross-links LAT
    through its two SH2 domains. PLCγ1 also protects LAT from dephosphorylation by
    the phosphatase CD45 and promotes LAT-dependent ERK activation and SLP76 phosphorylation.
    Intriguingly, a nonmonotonic effect of PLCγ1 on LAT clustering was discovered.
    Computer simulations, based on patchy particles, revealed how the cluster size
    is regulated by protein compositions. Together, these results define a critical
    function of PLCγ1 in promoting phase separation of the LAT complex and TCR signal
    transduction.
acknowledgement: Charles H. Hood Foundation (NO AWARD) ; Rally Foundation (NO AWARD)
article_number: e202009154
article_processing_charge: No
article_type: original
author:
- first_name: Longhui
  full_name: Zeng, Longhui
  last_name: Zeng
- first_name: Ivan
  full_name: Palaia, Ivan
  last_name: Palaia
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: Xiaolei
  full_name: Su, Xiaolei
  last_name: Su
citation:
  ama: Zeng L, Palaia I, Šarić A, Su X. PLCγ1 promotes phase separation of T cell
    signaling components. <i>Journal of Cell Biology</i>. 2021;220(6). doi:<a href="https://doi.org/10.1083/jcb.202009154">10.1083/jcb.202009154</a>
  apa: Zeng, L., Palaia, I., Šarić, A., &#38; Su, X. (2021). PLCγ1 promotes phase
    separation of T cell signaling components. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.202009154">https://doi.org/10.1083/jcb.202009154</a>
  chicago: Zeng, Longhui, Ivan Palaia, Anđela Šarić, and Xiaolei Su. “PLCγ1 Promotes
    Phase Separation of T Cell Signaling Components.” <i>Journal of Cell Biology</i>.
    Rockefeller University Press, 2021. <a href="https://doi.org/10.1083/jcb.202009154">https://doi.org/10.1083/jcb.202009154</a>.
  ieee: L. Zeng, I. Palaia, A. Šarić, and X. Su, “PLCγ1 promotes phase separation
    of T cell signaling components,” <i>Journal of Cell Biology</i>, vol. 220, no.
    6. Rockefeller University Press, 2021.
  ista: Zeng L, Palaia I, Šarić A, Su X. 2021. PLCγ1 promotes phase separation of
    T cell signaling components. Journal of Cell Biology. 220(6), e202009154.
  mla: Zeng, Longhui, et al. “PLCγ1 Promotes Phase Separation of T Cell Signaling
    Components.” <i>Journal of Cell Biology</i>, vol. 220, no. 6, e202009154, Rockefeller
    University Press, 2021, doi:<a href="https://doi.org/10.1083/jcb.202009154">10.1083/jcb.202009154</a>.
  short: L. Zeng, I. Palaia, A. Šarić, X. Su, Journal of Cell Biology 220 (2021).
date_created: 2021-11-25T15:21:30Z
date_published: 2021-04-30T00:00:00Z
date_updated: 2021-11-25T15:33:08Z
day: '30'
doi: 10.1083/jcb.202009154
extern: '1'
external_id:
  pmid:
  - '33929486'
intvolume: '       220'
issue: '6'
keyword:
- cell biology
language:
- iso: eng
month: '04'
oa_version: None
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: PLCγ1 promotes phase separation of T cell signaling components
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 220
year: '2021'
...
---
_id: '9094'
abstract:
- lang: eng
  text: Dendritic cells (DCs) are crucial for the priming of naive T cells and the
    initiation of adaptive immunity. Priming is initiated at a heterologous cell–cell
    contact, the immunological synapse (IS). While it is established that F-actin
    dynamics regulates signaling at the T cell side of the contact, little is known
    about the cytoskeletal contribution on the DC side. Here, we show that the DC
    actin cytoskeleton is decisive for the formation of a multifocal synaptic structure,
    which correlates with T cell priming efficiency. DC actin at the IS appears in
    transient foci that are dynamized by the WAVE regulatory complex (WRC). The absence
    of the WRC in DCs leads to stabilized contacts with T cells, caused by an increase
    in ICAM1-integrin–mediated cell–cell adhesion. This results in lower numbers of
    activated and proliferating T cells, demonstrating an important role for DC actin
    in the regulation of immune synapse functionality.
article_number: e202006081
article_processing_charge: No
article_type: original
author:
- first_name: Alexander F
  full_name: Leithner, Alexander F
  id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
  last_name: Leithner
  orcid: 0000-0002-1073-744X
- first_name: LM
  full_name: Altenburger, LM
  last_name: Altenburger
- first_name: R
  full_name: Hauschild, R
  last_name: Hauschild
- first_name: Frank P
  full_name: Assen, Frank P
  id: 3A8E7F24-F248-11E8-B48F-1D18A9856A87
  last_name: Assen
  orcid: 0000-0003-3470-6119
- first_name: K
  full_name: Rottner, K
  last_name: Rottner
- first_name: Stradal
  full_name: TEB, Stradal
  last_name: TEB
- first_name: A
  full_name: Diz-Muñoz, A
  last_name: Diz-Muñoz
- first_name: JV
  full_name: Stein, JV
  last_name: Stein
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Leithner AF, Altenburger L, Hauschild R, et al. Dendritic cell actin dynamics
    control contact duration and priming efficiency at the immunological synapse.
    <i>Journal of Cell Biology</i>. 2021;220(4). doi:<a href="https://doi.org/10.1083/jcb.202006081">10.1083/jcb.202006081</a>
  apa: Leithner, A. F., Altenburger, L., Hauschild, R., Assen, F. P., Rottner, K.,
    TEB, S., … Sixt, M. K. (2021). Dendritic cell actin dynamics control contact duration
    and priming efficiency at the immunological synapse. <i>Journal of Cell Biology</i>.
    Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.202006081">https://doi.org/10.1083/jcb.202006081</a>
  chicago: Leithner, Alexander F, LM Altenburger, R Hauschild, Frank P Assen, K Rottner,
    Stradal TEB, A Diz-Muñoz, JV Stein, and Michael K Sixt. “Dendritic Cell Actin
    Dynamics Control Contact Duration and Priming Efficiency at the Immunological
    Synapse.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2021.
    <a href="https://doi.org/10.1083/jcb.202006081">https://doi.org/10.1083/jcb.202006081</a>.
  ieee: A. F. Leithner <i>et al.</i>, “Dendritic cell actin dynamics control contact
    duration and priming efficiency at the immunological synapse,” <i>Journal of Cell
    Biology</i>, vol. 220, no. 4. Rockefeller University Press, 2021.
  ista: Leithner AF, Altenburger L, Hauschild R, Assen FP, Rottner K, TEB S, Diz-Muñoz
    A, Stein J, Sixt MK. 2021. Dendritic cell actin dynamics control contact duration
    and priming efficiency at the immunological synapse. Journal of Cell Biology.
    220(4), e202006081.
  mla: Leithner, Alexander F., et al. “Dendritic Cell Actin Dynamics Control Contact
    Duration and Priming Efficiency at the Immunological Synapse.” <i>Journal of Cell
    Biology</i>, vol. 220, no. 4, e202006081, Rockefeller University Press, 2021,
    doi:<a href="https://doi.org/10.1083/jcb.202006081">10.1083/jcb.202006081</a>.
  short: A.F. Leithner, L. Altenburger, R. Hauschild, F.P. Assen, K. Rottner, S. TEB,
    A. Diz-Muñoz, J. Stein, M.K. Sixt, Journal of Cell Biology 220 (2021).
corr_author: '1'
date_created: 2021-02-05T10:08:04Z
date_published: 2021-04-05T00:00:00Z
date_updated: 2024-10-09T21:00:23Z
day: '05'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1083/jcb.202006081
external_id:
  isi:
  - '000626365700001'
  pmid:
  - '33533935'
file:
- access_level: open_access
  checksum: 843ebc153847c8626e13c9c5ce71d533
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-12T14:16:21Z
  date_updated: 2022-05-12T14:16:21Z
  file_id: '11367'
  file_name: 2021_JournCellBiology_Leithner.pdf
  file_size: 5102328
  relation: main_file
  success: 1
file_date_updated: 2022-05-12T14:16:21Z
has_accepted_license: '1'
intvolume: '       220'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dendritic cell actin dynamics control contact duration and priming efficiency
  at the immunological synapse
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 220
year: '2021'
...
---
_id: '9306'
abstract:
- lang: eng
  text: Assemblies of actin and its regulators underlie the dynamic morphology of
    all eukaryotic cells. To understand how actin regulatory proteins work together
    to generate actin-rich structures such as filopodia, we analyzed the localization
    of diverse actin regulators within filopodia in Drosophila embryos and in a complementary
    in vitro system of filopodia-like structures (FLSs). We found that the composition
    of the regulatory protein complex where actin is incorporated (the filopodial
    tip complex) is remarkably heterogeneous both in vivo and in vitro. Our data reveal
    that different pairs of proteins correlate with each other and with actin bundle
    length, suggesting the presence of functional subcomplexes. This is consistent
    with a theoretical framework where three or more redundant subcomplexes join the
    tip complex stochastically, with any two being sufficient to drive filopodia formation.
    We provide an explanation for the observed heterogeneity and suggest that a mechanism
    based on multiple components allows stereotypical filopodial dynamics to arise
    from diverse upstream signaling pathways.
acknowledgement: "This work was supported by European Research Council grant 281971,
  Wellcome Trust Research Career Development Fellowship WT095829AIA and Wellcome Trust
  Senior Research\r\nFellowship 219482/Z/19/Z to J.L. Gallop, a Wellcome Trust Senior
  Investigator Award 098357 to B.D. Simons, and an Austrian Science Fund grant (P31639)
  to E. Hannezo. We acknowledge\r\ncore funding by the Wellcome Trust (092096) and
  Cancer Research UK (C6946/A14492). U. Dobramysl was supported by a Wellcome Trust
  Junior Interdisciplinary Fellowship grant\r\n(105602/Z/14/Z) and a Herchel Smith
  Postdoctoral Fellowship. H. Shimo was supported by a Funai Foundation Overseas scholarship."
article_number: e202003052
article_processing_charge: No
article_type: original
author:
- first_name: Ulrich
  full_name: Dobramysl, Ulrich
  last_name: Dobramysl
- first_name: Iris Katharina
  full_name: Jarsch, Iris Katharina
  last_name: Jarsch
- first_name: Yoshiko
  full_name: Inoue, Yoshiko
  last_name: Inoue
- first_name: Hanae
  full_name: Shimo, Hanae
  last_name: Shimo
- first_name: Benjamin
  full_name: Richier, Benjamin
  last_name: Richier
- first_name: Jonathan R.
  full_name: Gadsby, Jonathan R.
  last_name: Gadsby
- first_name: Julia
  full_name: Mason, Julia
  last_name: Mason
- first_name: Alicja
  full_name: Szałapak, Alicja
  last_name: Szałapak
- first_name: Pantelis Savvas
  full_name: Ioannou, Pantelis Savvas
  last_name: Ioannou
- first_name: Guilherme Pereira
  full_name: Correia, Guilherme Pereira
  last_name: Correia
- first_name: Astrid
  full_name: Walrant, Astrid
  last_name: Walrant
- first_name: Richard
  full_name: Butler, Richard
  last_name: Butler
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Benjamin D.
  full_name: Simons, Benjamin D.
  last_name: Simons
- first_name: Jennifer L.
  full_name: Gallop, Jennifer L.
  last_name: Gallop
citation:
  ama: Dobramysl U, Jarsch IK, Inoue Y, et al. Stochastic combinations of actin regulatory
    proteins are sufficient to drive filopodia formation. <i>Journal of Cell Biology</i>.
    2021;220(4). doi:<a href="https://doi.org/10.1083/jcb.202003052">10.1083/jcb.202003052</a>
  apa: Dobramysl, U., Jarsch, I. K., Inoue, Y., Shimo, H., Richier, B., Gadsby, J.
    R., … Gallop, J. L. (2021). Stochastic combinations of actin regulatory proteins
    are sufficient to drive filopodia formation. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.202003052">https://doi.org/10.1083/jcb.202003052</a>
  chicago: Dobramysl, Ulrich, Iris Katharina Jarsch, Yoshiko Inoue, Hanae Shimo, Benjamin
    Richier, Jonathan R. Gadsby, Julia Mason, et al. “Stochastic Combinations of Actin
    Regulatory Proteins Are Sufficient to Drive Filopodia Formation.” <i>Journal of
    Cell Biology</i>. Rockefeller University Press, 2021. <a href="https://doi.org/10.1083/jcb.202003052">https://doi.org/10.1083/jcb.202003052</a>.
  ieee: U. Dobramysl <i>et al.</i>, “Stochastic combinations of actin regulatory proteins
    are sufficient to drive filopodia formation,” <i>Journal of Cell Biology</i>,
    vol. 220, no. 4. Rockefeller University Press, 2021.
  ista: Dobramysl U, Jarsch IK, Inoue Y, Shimo H, Richier B, Gadsby JR, Mason J, Szałapak
    A, Ioannou PS, Correia GP, Walrant A, Butler R, Hannezo EB, Simons BD, Gallop
    JL. 2021. Stochastic combinations of actin regulatory proteins are sufficient
    to drive filopodia formation. Journal of Cell Biology. 220(4), e202003052.
  mla: Dobramysl, Ulrich, et al. “Stochastic Combinations of Actin Regulatory Proteins
    Are Sufficient to Drive Filopodia Formation.” <i>Journal of Cell Biology</i>,
    vol. 220, no. 4, e202003052, Rockefeller University Press, 2021, doi:<a href="https://doi.org/10.1083/jcb.202003052">10.1083/jcb.202003052</a>.
  short: U. Dobramysl, I.K. Jarsch, Y. Inoue, H. Shimo, B. Richier, J.R. Gadsby, J.
    Mason, A. Szałapak, P.S. Ioannou, G.P. Correia, A. Walrant, R. Butler, E.B. Hannezo,
    B.D. Simons, J.L. Gallop, Journal of Cell Biology 220 (2021).
date_created: 2021-04-04T22:01:21Z
date_published: 2021-03-19T00:00:00Z
date_updated: 2026-04-02T13:59:43Z
day: '19'
ddc:
- '576'
department:
- _id: EdHa
doi: 10.1083/jcb.202003052
external_id:
  isi:
  - '000663160600002'
  pmid:
  - '33740033'
file:
- access_level: open_access
  checksum: 4739ffd90f2c7e05ac5b00f057c58aa2
  content_type: application/pdf
  creator: dernst
  date_created: 2021-04-06T10:39:08Z
  date_updated: 2021-04-06T10:39:08Z
  file_id: '9310'
  file_name: 2021_JCB_Dobramysl.pdf
  file_size: 9019720
  relation: main_file
  success: 1
file_date_updated: 2021-04-06T10:39:08Z
has_accepted_license: '1'
intvolume: '       220'
isi: 1
issue: '4'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 268294B6-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P31639
  name: Active mechano-chemical description of the cell cytoskeleton
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Stochastic combinations of actin regulatory proteins are sufficient to drive
  filopodia formation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 220
year: '2021'
...
---
_id: '7875'
abstract:
- lang: eng
  text: 'Cells navigating through complex tissues face a fundamental challenge: while
    multiple protrusions explore different paths, the cell needs to avoid entanglement.
    How a cell surveys and then corrects its own shape is poorly understood. Here,
    we demonstrate that spatially distinct microtubule dynamics regulate amoeboid
    cell migration by locally promoting the retraction of protrusions. In migrating
    dendritic cells, local microtubule depolymerization within protrusions remote
    from the microtubule organizing center triggers actomyosin contractility controlled
    by RhoA and its exchange factor Lfc. Depletion of Lfc leads to aberrant myosin
    localization, thereby causing two effects that rate-limit locomotion: (1) impaired
    cell edge coordination during path finding and (2) defective adhesion resolution.
    Compromised shape control is particularly hindering in geometrically complex microenvironments,
    where it leads to entanglement and ultimately fragmentation of the cell body.
    We thus demonstrate that microtubules can act as a proprioceptive device: they
    sense cell shape and control actomyosin retraction to sustain cellular coherence.'
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
- _id: PreCl
acknowledgement: "The authors thank the Scientific Service Units (Life Sciences, Bioimaging,
  Preclinical) of the Institute of Science and Technology Austria for excellent support.
  This work was funded by the European Research Council (ERC StG 281556 and CoG 724373),
  two grants from the Austrian\r\nScience Fund (FWF; P29911 and DK Nanocell W1250-B20
  to M. Sixt) and by the German Research Foundation (DFG SFB1032 project B09) to O.
  Thorn-Seshold and D. Trauner. J. Renkawitz was supported by ISTFELLOW funding from
  the People Program (Marie Curie Actions) of the European Union’s Seventh Framework
  Programme (FP7/2007-2013) under the Research Executive Agency grant agreement (291734)
  and a European Molecular Biology Organization long-term fellowship (ALTF 1396-2014)
  co-funded by the European Commission (LTFCOFUND2013, GA-2013-609409), E. Kiermaier
  by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s
  Excellence Strategy—EXC 2151—390873048, and H. Hacker by the American Lebanese Syrian
  Associated ¨Charities. K.-D. Fischer was supported by the Analysis, Imaging and
  Modelling of Neuronal and Inflammatory Processes graduate school funded by the Ministry
  of Economics, Science, and Digitisation of the State Saxony-Anhalt and by the European
  Funds for Social and Regional Development."
article_number: e201907154
article_processing_charge: No
article_type: original
author:
- first_name: Aglaja
  full_name: Kopf, Aglaja
  id: 31DAC7B6-F248-11E8-B48F-1D18A9856A87
  last_name: Kopf
  orcid: 0000-0002-2187-6656
- first_name: Jörg
  full_name: Renkawitz, Jörg
  id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
  last_name: Renkawitz
  orcid: 0000-0003-2856-3369
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Irute
  full_name: Girkontaite, Irute
  last_name: Girkontaite
- first_name: Kerry
  full_name: Tedford, Kerry
  last_name: Tedford
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Oliver
  full_name: Thorn-Seshold, Oliver
  last_name: Thorn-Seshold
- first_name: Dirk
  full_name: Trauner, Dirk
  id: E8F27F48-3EBA-11E9-92A1-B709E6697425
  last_name: Trauner
- first_name: Hans
  full_name: Häcker, Hans
  last_name: Häcker
- first_name: Klaus Dieter
  full_name: Fischer, Klaus Dieter
  last_name: Fischer
- first_name: Eva
  full_name: Kiermaier, Eva
  id: 3EB04B78-F248-11E8-B48F-1D18A9856A87
  last_name: Kiermaier
  orcid: 0000-0001-6165-5738
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Kopf A, Renkawitz J, Hauschild R, et al. Microtubules control cellular shape
    and coherence in amoeboid migrating cells. <i>The Journal of Cell Biology</i>.
    2020;219(6). doi:<a href="https://doi.org/10.1083/jcb.201907154">10.1083/jcb.201907154</a>
  apa: Kopf, A., Renkawitz, J., Hauschild, R., Girkontaite, I., Tedford, K., Merrin,
    J., … Sixt, M. K. (2020). Microtubules control cellular shape and coherence in
    amoeboid migrating cells. <i>The Journal of Cell Biology</i>. Rockefeller University
    Press. <a href="https://doi.org/10.1083/jcb.201907154">https://doi.org/10.1083/jcb.201907154</a>
  chicago: Kopf, Aglaja, Jörg Renkawitz, Robert Hauschild, Irute Girkontaite, Kerry
    Tedford, Jack Merrin, Oliver Thorn-Seshold, et al. “Microtubules Control Cellular
    Shape and Coherence in Amoeboid Migrating Cells.” <i>The Journal of Cell Biology</i>.
    Rockefeller University Press, 2020. <a href="https://doi.org/10.1083/jcb.201907154">https://doi.org/10.1083/jcb.201907154</a>.
  ieee: A. Kopf <i>et al.</i>, “Microtubules control cellular shape and coherence
    in amoeboid migrating cells,” <i>The Journal of Cell Biology</i>, vol. 219, no.
    6. Rockefeller University Press, 2020.
  ista: Kopf A, Renkawitz J, Hauschild R, Girkontaite I, Tedford K, Merrin J, Thorn-Seshold
    O, Trauner D, Häcker H, Fischer KD, Kiermaier E, Sixt MK. 2020. Microtubules control
    cellular shape and coherence in amoeboid migrating cells. The Journal of Cell
    Biology. 219(6), e201907154.
  mla: Kopf, Aglaja, et al. “Microtubules Control Cellular Shape and Coherence in
    Amoeboid Migrating Cells.” <i>The Journal of Cell Biology</i>, vol. 219, no. 6,
    e201907154, Rockefeller University Press, 2020, doi:<a href="https://doi.org/10.1083/jcb.201907154">10.1083/jcb.201907154</a>.
  short: A. Kopf, J. Renkawitz, R. Hauschild, I. Girkontaite, K. Tedford, J. Merrin,
    O. Thorn-Seshold, D. Trauner, H. Häcker, K.D. Fischer, E. Kiermaier, M.K. Sixt,
    The Journal of Cell Biology 219 (2020).
corr_author: '1'
date_created: 2020-05-24T22:00:56Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2025-04-14T13:10:03Z
day: '01'
ddc:
- '570'
department:
- _id: MiSi
- _id: Bio
- _id: NanoFab
doi: 10.1083/jcb.201907154
ec_funded: 1
external_id:
  isi:
  - '000538141100020'
  pmid:
  - '32379884'
file:
- access_level: open_access
  checksum: cb0b9c77842ae1214caade7b77e4d82d
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-24T13:25:13Z
  date_updated: 2020-11-24T13:25:13Z
  file_id: '8801'
  file_name: 2020_JCellBiol_Kopf.pdf
  file_size: 7536712
  relation: main_file
  success: 1
file_date_updated: 2020-11-24T13:25:13Z
has_accepted_license: '1'
intvolume: '       219'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25A603A2-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281556'
  name: Cytoskeletal force generation and force transduction of migrating leukocytes
- _id: 25FE9508-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '724373'
  name: Cellular Navigation Along Spatial Gradients
- _id: 26018E70-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29911
  name: Mechanical adaptation of lamellipodial actin
- _id: 252C3B08-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1250-B20
  name: Nano-Analytics of Cellular Systems
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 25A48D24-B435-11E9-9278-68D0E5697425
  grant_number: ALTF 1396-2014
  name: Molecular and system level view of immune cell migration
publication: The Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microtubules control cellular shape and coherence in amoeboid migrating cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 219
year: '2020'
...
---
_id: '8190'
article_number: e202007029
article_processing_charge: No
article_type: letter_note
author:
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Anna
  full_name: Huttenlocher, Anna
  last_name: Huttenlocher
citation:
  ama: 'Sixt MK, Huttenlocher A. Zena Werb (1945-2020): Cell biology in context. <i>The
    Journal of Cell Biology</i>. 2020;219(8). doi:<a href="https://doi.org/10.1083/jcb.202007029">10.1083/jcb.202007029</a>'
  apa: 'Sixt, M. K., &#38; Huttenlocher, A. (2020). Zena Werb (1945-2020): Cell biology
    in context. <i>The Journal of Cell Biology</i>. Rockefeller University Press.
    <a href="https://doi.org/10.1083/jcb.202007029">https://doi.org/10.1083/jcb.202007029</a>'
  chicago: 'Sixt, Michael K, and Anna Huttenlocher. “Zena Werb (1945-2020): Cell Biology
    in Context.” <i>The Journal of Cell Biology</i>. Rockefeller University Press,
    2020. <a href="https://doi.org/10.1083/jcb.202007029">https://doi.org/10.1083/jcb.202007029</a>.'
  ieee: 'M. K. Sixt and A. Huttenlocher, “Zena Werb (1945-2020): Cell biology in context,”
    <i>The Journal of Cell Biology</i>, vol. 219, no. 8. Rockefeller University Press,
    2020.'
  ista: 'Sixt MK, Huttenlocher A. 2020. Zena Werb (1945-2020): Cell biology in context.
    The Journal of Cell Biology. 219(8), e202007029.'
  mla: 'Sixt, Michael K., and Anna Huttenlocher. “Zena Werb (1945-2020): Cell Biology
    in Context.” <i>The Journal of Cell Biology</i>, vol. 219, no. 8, e202007029,
    Rockefeller University Press, 2020, doi:<a href="https://doi.org/10.1083/jcb.202007029">10.1083/jcb.202007029</a>.'
  short: M.K. Sixt, A. Huttenlocher, The Journal of Cell Biology 219 (2020).
date_created: 2020-08-02T22:00:57Z
date_published: 2020-07-22T00:00:00Z
date_updated: 2025-06-12T07:34:40Z
day: '22'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1083/jcb.202007029
external_id:
  isi:
  - '000573631000004'
  pmid:
  - '32699885'
file:
- access_level: open_access
  checksum: 30016d778d266b8e17d01094917873b8
  content_type: application/pdf
  creator: dernst
  date_created: 2020-08-04T13:11:52Z
  date_updated: 2021-02-02T23:30:03Z
  embargo: 2021-02-01
  file_id: '8200'
  file_name: 2020_JCB_Sixt.pdf
  file_size: 830725
  relation: main_file
file_date_updated: 2021-02-02T23:30:03Z
has_accepted_license: '1'
intvolume: '       219'
isi: 1
issue: '8'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: The Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
publication_status: published
publisher: Rockefeller University Press
scopus_import: '1'
status: public
title: 'Zena Werb (1945-2020): Cell biology in context'
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 219
year: '2020'
...
---
_id: '11061'
abstract:
- lang: eng
  text: Many adult tissues contain postmitotic cells as old as the host organism.
    The only organelle that does not turn over in these cells is the nucleus, and
    its maintenance represents a formidable challenge, as it harbors regulatory proteins
    that persist throughout adulthood. Here we developed strategies to visualize two
    classes of such long-lived proteins, histones and nucleoporins, to understand
    the function of protein longevity in nuclear maintenance. Genome-wide mapping
    of histones revealed specific enrichment of long-lived variants at silent gene
    loci. Interestingly, nuclear pores are maintained by piecemeal replacement of
    subunits, resulting in mosaic complexes composed of polypeptides with vastly different
    ages. In contrast, nondividing quiescent cells remove old nuclear pores in an
    ESCRT-dependent manner. Our findings reveal distinct molecular strategies of nuclear
    maintenance, linking lifelong protein persistence to gene regulation and nuclear
    integrity.
article_processing_charge: No
article_type: original
author:
- first_name: Brandon H.
  full_name: Toyama, Brandon H.
  last_name: Toyama
- first_name: Rafael
  full_name: Arrojo e Drigo, Rafael
  last_name: Arrojo e Drigo
- first_name: Varda
  full_name: Lev-Ram, Varda
  last_name: Lev-Ram
- first_name: Ranjan
  full_name: Ramachandra, Ranjan
  last_name: Ramachandra
- first_name: Thomas J.
  full_name: Deerinck, Thomas J.
  last_name: Deerinck
- first_name: Claude
  full_name: Lechene, Claude
  last_name: Lechene
- first_name: Mark H.
  full_name: Ellisman, Mark H.
  last_name: Ellisman
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Toyama BH, Arrojo e Drigo R, Lev-Ram V, et al. Visualization of long-lived
    proteins reveals age mosaicism within nuclei of postmitotic cells. <i>Journal
    of Cell Biology</i>. 2019;218(2):433-444. doi:<a href="https://doi.org/10.1083/jcb.201809123">10.1083/jcb.201809123</a>
  apa: Toyama, B. H., Arrojo e Drigo, R., Lev-Ram, V., Ramachandra, R., Deerinck,
    T. J., Lechene, C., … Hetzer, M. (2019). Visualization of long-lived proteins
    reveals age mosaicism within nuclei of postmitotic cells. <i>Journal of Cell Biology</i>.
    Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.201809123">https://doi.org/10.1083/jcb.201809123</a>
  chicago: Toyama, Brandon H., Rafael Arrojo e Drigo, Varda Lev-Ram, Ranjan Ramachandra,
    Thomas J. Deerinck, Claude Lechene, Mark H. Ellisman, and Martin Hetzer. “Visualization
    of Long-Lived Proteins Reveals Age Mosaicism within Nuclei of Postmitotic Cells.”
    <i>Journal of Cell Biology</i>. Rockefeller University Press, 2019. <a href="https://doi.org/10.1083/jcb.201809123">https://doi.org/10.1083/jcb.201809123</a>.
  ieee: B. H. Toyama <i>et al.</i>, “Visualization of long-lived proteins reveals
    age mosaicism within nuclei of postmitotic cells,” <i>Journal of Cell Biology</i>,
    vol. 218, no. 2. Rockefeller University Press, pp. 433–444, 2019.
  ista: Toyama BH, Arrojo e Drigo R, Lev-Ram V, Ramachandra R, Deerinck TJ, Lechene
    C, Ellisman MH, Hetzer M. 2019. Visualization of long-lived proteins reveals age
    mosaicism within nuclei of postmitotic cells. Journal of Cell Biology. 218(2),
    433–444.
  mla: Toyama, Brandon H., et al. “Visualization of Long-Lived Proteins Reveals Age
    Mosaicism within Nuclei of Postmitotic Cells.” <i>Journal of Cell Biology</i>,
    vol. 218, no. 2, Rockefeller University Press, 2019, pp. 433–44, doi:<a href="https://doi.org/10.1083/jcb.201809123">10.1083/jcb.201809123</a>.
  short: B.H. Toyama, R. Arrojo e Drigo, V. Lev-Ram, R. Ramachandra, T.J. Deerinck,
    C. Lechene, M.H. Ellisman, M. Hetzer, Journal of Cell Biology 218 (2019) 433–444.
date_created: 2022-04-07T07:45:11Z
date_published: 2019-02-04T00:00:00Z
date_updated: 2024-10-14T11:19:21Z
day: '04'
ddc:
- '570'
doi: 10.1083/jcb.201809123
extern: '1'
external_id:
  pmid:
  - '30552100'
file:
- access_level: open_access
  checksum: 7964ebbf833b0b35f9fba840eea9531d
  content_type: application/pdf
  creator: dernst
  date_created: 2022-04-08T08:26:32Z
  date_updated: 2022-04-08T08:26:32Z
  file_id: '11139'
  file_name: 2019_JCB_Toyama.pdf
  file_size: 2503838
  relation: main_file
  success: 1
file_date_updated: 2022-04-08T08:26:32Z
has_accepted_license: '1'
intvolume: '       218'
issue: '2'
keyword:
- Cell Biology
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 433-444
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Visualization of long-lived proteins reveals age mosaicism within nuclei of
  postmitotic cells
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 218
year: '2019'
...
---
_id: '11075'
abstract:
- lang: eng
  text: Previously, we identified the nucleoporin gp210/Nup210 as a critical regulator
    of muscle and neuronal differentiation, but how this nucleoporin exerts its function
    and whether it modulates nuclear pore complex (NPC) activity remain unknown. Here,
    we show that gp210/Nup210 mediates muscle cell differentiation in vitro via its
    conserved N-terminal domain that extends into the perinuclear space. Removal of
    the C-terminal domain, which partially mislocalizes gp210/Nup210 away from NPCs,
    efficiently rescues the differentiation defect caused by the knockdown of endogenous
    gp210/Nup210. Unexpectedly, a gp210/Nup210 mutant lacking the NPC-targeting transmembrane
    and C-terminal domains is sufficient for C2C12 myoblast differentiation. We demonstrate
    that the endoplasmic reticulum (ER) stress-specific caspase cascade is exacerbated
    during Nup210 depletion and that blocking ER stress-mediated apoptosis rescues
    differentiation of Nup210-deficient cells. Our results suggest that the role of
    gp210/Nup210 in cell differentiation is mediated by its large luminal domain,
    which can act independently of NPC association and appears to play a pivotal role
    in the maintenance of nuclear envelope/ER homeostasis.
article_processing_charge: No
article_type: original
author:
- first_name: J. Sebastian
  full_name: Gomez-Cavazos, J. Sebastian
  last_name: Gomez-Cavazos
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Gomez-Cavazos JS, Hetzer M. The nucleoporin gp210/Nup210 controls muscle differentiation
    by regulating nuclear envelope/ER homeostasis. <i>Journal of Cell Biology</i>.
    2015;208(6):671-681. doi:<a href="https://doi.org/10.1083/jcb.201410047">10.1083/jcb.201410047</a>
  apa: Gomez-Cavazos, J. S., &#38; Hetzer, M. (2015). The nucleoporin gp210/Nup210
    controls muscle differentiation by regulating nuclear envelope/ER homeostasis.
    <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.201410047">https://doi.org/10.1083/jcb.201410047</a>
  chicago: Gomez-Cavazos, J. Sebastian, and Martin Hetzer. “The Nucleoporin Gp210/Nup210
    Controls Muscle Differentiation by Regulating Nuclear Envelope/ER Homeostasis.”
    <i>Journal of Cell Biology</i>. Rockefeller University Press, 2015. <a href="https://doi.org/10.1083/jcb.201410047">https://doi.org/10.1083/jcb.201410047</a>.
  ieee: J. S. Gomez-Cavazos and M. Hetzer, “The nucleoporin gp210/Nup210 controls
    muscle differentiation by regulating nuclear envelope/ER homeostasis,” <i>Journal
    of Cell Biology</i>, vol. 208, no. 6. Rockefeller University Press, pp. 671–681,
    2015.
  ista: Gomez-Cavazos JS, Hetzer M. 2015. The nucleoporin gp210/Nup210 controls muscle
    differentiation by regulating nuclear envelope/ER homeostasis. Journal of Cell
    Biology. 208(6), 671–681.
  mla: Gomez-Cavazos, J. Sebastian, and Martin Hetzer. “The Nucleoporin Gp210/Nup210
    Controls Muscle Differentiation by Regulating Nuclear Envelope/ER Homeostasis.”
    <i>Journal of Cell Biology</i>, vol. 208, no. 6, Rockefeller University Press,
    2015, pp. 671–81, doi:<a href="https://doi.org/10.1083/jcb.201410047">10.1083/jcb.201410047</a>.
  short: J.S. Gomez-Cavazos, M. Hetzer, Journal of Cell Biology 208 (2015) 671–681.
date_created: 2022-04-07T07:49:10Z
date_published: 2015-03-16T00:00:00Z
date_updated: 2024-10-14T11:22:26Z
day: '16'
doi: 10.1083/jcb.201410047
extern: '1'
external_id:
  pmid:
  - '25778917'
intvolume: '       208'
issue: '6'
keyword:
- Cell Biology
language:
- iso: eng
month: '03'
oa_version: Published Version
page: 671-681
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The nucleoporin gp210/Nup210 controls muscle differentiation by regulating
  nuclear envelope/ER homeostasis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 208
year: '2015'
...
---
_id: '11094'
abstract:
- lang: eng
  text: Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear
    envelope (NE) reformation and into an intact NE as cells progress through interphase.
    Although recent studies have shown that NPC formation occurs by two different
    molecular mechanisms at two distinct cell cycle stages, little is known about
    the molecular players that mediate the fusion of the outer and inner nuclear membranes
    to form pores. In this paper, we provide evidence that the transmembrane nucleoporin
    (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly
    sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear
    membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the
    INM and ONM. Additionally, Sun1, an INM protein that is known to interact with
    the cytoskeleton, was specifically required for interphase assembly and localized
    with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact
    transiently to promote early steps of interphase NPC assembly.
article_processing_charge: No
article_type: original
author:
- first_name: Jessica A.
  full_name: Talamas, Jessica A.
  last_name: Talamas
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase
    NPC assembly. <i>Journal of Cell Biology</i>. 2011;194(1):27-37. doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>
  apa: Talamas, J. A., &#38; Hetzer, M. (2011). POM121 and Sun1 play a role in early
    steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>
  chicago: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in
    Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2011. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>.
  ieee: J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of
    interphase NPC assembly,” <i>Journal of Cell Biology</i>, vol. 194, no. 1. Rockefeller
    University Press, pp. 27–37, 2011.
  ista: Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of
    interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37.
  mla: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early
    Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>, vol. 194, no.
    1, Rockefeller University Press, 2011, pp. 27–37, doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>.
  short: J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.
date_created: 2022-04-07T07:52:18Z
date_published: 2011-07-04T00:00:00Z
date_updated: 2024-10-14T11:26:10Z
day: '04'
doi: 10.1083/jcb.201012154
extern: '1'
external_id:
  pmid:
  - '21727197'
intvolume: '       194'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.201012154
month: '07'
oa: 1
oa_version: Published Version
page: 27-37
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: POM121 and Sun1 play a role in early steps of interphase NPC assembly
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 194
year: '2011'
...
---
_id: '11106'
abstract:
- lang: eng
  text: Formation of the nuclear envelope (NE) around segregated chromosomes occurs
    by the reshaping of the endoplasmic reticulum (ER), a reservoir for disassembled
    nuclear membrane components during mitosis. In this study, we show that inner
    nuclear membrane proteins such as lamin B receptor (LBR), MAN1, Lap2β, and the
    trans-membrane nucleoporins Ndc1 and POM121 drive the spreading of ER membranes
    into the emerging NE via their capacity to bind chromatin in a collaborative manner.
    Despite their redundant functions, decreasing the levels of any of these trans-membrane
    proteins by RNAi-mediated knockdown delayed NE formation, whereas increasing the
    levels of any of them had the opposite effect. Furthermore, acceleration of NE
    formation interferes with chromosome separation during mitosis, indicating that
    the time frame over which chromatin becomes membrane enclosed is physiologically
    relevant and regulated. These data suggest that functionally distinct classes
    of chromatin-interacting membrane proteins, which are present at nonsaturating
    levels, collaborate to rapidly reestablish the nuclear compartment at the end
    of mitosis.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel J.
  full_name: Anderson, Daniel J.
  last_name: Anderson
- first_name: Jesse D.
  full_name: Vargas, Jesse D.
  last_name: Vargas
- first_name: Joshua P.
  full_name: Hsiao, Joshua P.
  last_name: Hsiao
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Anderson DJ, Vargas JD, Hsiao JP, Hetzer M. Recruitment of functionally distinct
    membrane proteins to chromatin mediates nuclear envelope formation in vivo. <i>Journal
    of Cell Biology</i>. 2009;186(2):183-191. doi:<a href="https://doi.org/10.1083/jcb.200901106">10.1083/jcb.200901106</a>
  apa: Anderson, D. J., Vargas, J. D., Hsiao, J. P., &#38; Hetzer, M. (2009). Recruitment
    of functionally distinct membrane proteins to chromatin mediates nuclear envelope
    formation in vivo. <i>Journal of Cell Biology</i>. Rockefeller University Press.
    <a href="https://doi.org/10.1083/jcb.200901106">https://doi.org/10.1083/jcb.200901106</a>
  chicago: Anderson, Daniel J., Jesse D. Vargas, Joshua P. Hsiao, and Martin Hetzer.
    “Recruitment of Functionally Distinct Membrane Proteins to Chromatin Mediates
    Nuclear Envelope Formation in Vivo.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2009. <a href="https://doi.org/10.1083/jcb.200901106">https://doi.org/10.1083/jcb.200901106</a>.
  ieee: D. J. Anderson, J. D. Vargas, J. P. Hsiao, and M. Hetzer, “Recruitment of
    functionally distinct membrane proteins to chromatin mediates nuclear envelope
    formation in vivo,” <i>Journal of Cell Biology</i>, vol. 186, no. 2. Rockefeller
    University Press, pp. 183–191, 2009.
  ista: Anderson DJ, Vargas JD, Hsiao JP, Hetzer M. 2009. Recruitment of functionally
    distinct membrane proteins to chromatin mediates nuclear envelope formation in
    vivo. Journal of Cell Biology. 186(2), 183–191.
  mla: Anderson, Daniel J., et al. “Recruitment of Functionally Distinct Membrane
    Proteins to Chromatin Mediates Nuclear Envelope Formation in Vivo.” <i>Journal
    of Cell Biology</i>, vol. 186, no. 2, Rockefeller University Press, 2009, pp.
    183–91, doi:<a href="https://doi.org/10.1083/jcb.200901106">10.1083/jcb.200901106</a>.
  short: D.J. Anderson, J.D. Vargas, J.P. Hsiao, M. Hetzer, Journal of Cell Biology
    186 (2009) 183–191.
date_created: 2022-04-07T07:54:18Z
date_published: 2009-07-20T00:00:00Z
date_updated: 2024-10-14T11:28:48Z
day: '20'
doi: 10.1083/jcb.200901106
extern: '1'
external_id:
  pmid:
  - '19620630'
intvolume: '       186'
issue: '2'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.200901106
month: '07'
oa: 1
oa_version: Published Version
page: 183-191
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1083/jcb.20090110620090903c
scopus_import: '1'
status: public
title: Recruitment of functionally distinct membrane proteins to chromatin mediates
  nuclear envelope formation in vivo
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 186
year: '2009'
...
---
_id: '11107'
abstract:
- lang: eng
  text: Nucleocytoplasmic transport occurs exclusively through nuclear pore complexes
    (NPCs) embedded in pores formed by inner and outer nuclear membrane fusion. The
    mechanism for de novo pore and NPC biogenesis remains unclear. Reticulons (RTNs)
    and Yop1/DP1 are conserved membrane protein families required to form and maintain
    the tubular endoplasmic reticulum (ER) and the postmitotic nuclear envelope. In
    this study, we report that members of the RTN and Yop1/DP1 families are required
    for nuclear pore formation. Analysis of Saccharomyces cerevisiae prp20-G282S and
    nup133Δ NPC assembly mutants revealed perturbations in Rtn1–green fluorescent
    protein (GFP) and Yop1-GFP ER distribution and colocalization to NPC clusters.
    Combined deletion of RTN1 and YOP1 resulted in NPC clustering, nuclear import
    defects, and synthetic lethality with the additional absence of Pom34, Pom152,
    and Nup84 subcomplex members. We tested for a direct role in NPC biogenesis using
    Xenopus laevis in vitro assays and found that anti-Rtn4a antibodies specifically
    inhibited de novo nuclear pore formation. We hypothesize that these ER membrane–bending
    proteins mediate early NPC assembly steps.
article_processing_charge: No
article_type: original
author:
- first_name: T. Renee
  full_name: Dawson, T. Renee
  last_name: Dawson
- first_name: Michelle D.
  full_name: Lazarus, Michelle D.
  last_name: Lazarus
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Susan R.
  full_name: Wente, Susan R.
  last_name: Wente
citation:
  ama: Dawson TR, Lazarus MD, Hetzer M, Wente SR. ER membrane–bending proteins are
    necessary for de novo nuclear pore formation. <i>Journal of Cell Biology</i>.
    2009;184(5):659-675. doi:<a href="https://doi.org/10.1083/jcb.200806174">10.1083/jcb.200806174</a>
  apa: Dawson, T. R., Lazarus, M. D., Hetzer, M., &#38; Wente, S. R. (2009). ER membrane–bending
    proteins are necessary for de novo nuclear pore formation. <i>Journal of Cell
    Biology</i>. Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.200806174">https://doi.org/10.1083/jcb.200806174</a>
  chicago: Dawson, T. Renee, Michelle D. Lazarus, Martin Hetzer, and Susan R. Wente.
    “ER Membrane–Bending Proteins Are Necessary for de Novo Nuclear Pore Formation.”
    <i>Journal of Cell Biology</i>. Rockefeller University Press, 2009. <a href="https://doi.org/10.1083/jcb.200806174">https://doi.org/10.1083/jcb.200806174</a>.
  ieee: T. R. Dawson, M. D. Lazarus, M. Hetzer, and S. R. Wente, “ER membrane–bending
    proteins are necessary for de novo nuclear pore formation,” <i>Journal of Cell
    Biology</i>, vol. 184, no. 5. Rockefeller University Press, pp. 659–675, 2009.
  ista: Dawson TR, Lazarus MD, Hetzer M, Wente SR. 2009. ER membrane–bending proteins
    are necessary for de novo nuclear pore formation. Journal of Cell Biology. 184(5),
    659–675.
  mla: Dawson, T. Renee, et al. “ER Membrane–Bending Proteins Are Necessary for de
    Novo Nuclear Pore Formation.” <i>Journal of Cell Biology</i>, vol. 184, no. 5,
    Rockefeller University Press, 2009, pp. 659–75, doi:<a href="https://doi.org/10.1083/jcb.200806174">10.1083/jcb.200806174</a>.
  short: T.R. Dawson, M.D. Lazarus, M. Hetzer, S.R. Wente, Journal of Cell Biology
    184 (2009) 659–675.
date_created: 2022-04-07T07:54:44Z
date_published: 2009-03-09T00:00:00Z
date_updated: 2022-07-18T08:55:05Z
day: '09'
doi: 10.1083/jcb.200806174
extern: '1'
external_id:
  pmid:
  - '19273614'
intvolume: '       184'
issue: '5'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.200806174
month: '03'
oa: 1
oa_version: Published Version
page: 659-675
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: ER membrane–bending proteins are necessary for de novo nuclear pore formation
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 184
year: '2009'
...
---
_id: '11111'
abstract:
- lang: eng
  text: During mitosis in metazoans, segregated chromosomes become enclosed by the
    nuclear envelope (NE), a double membrane that is continuous with the endoplasmic
    reticulum (ER). Recent in vitro data suggest that NE formation occurs by chromatin-mediated
    reorganization of the tubular ER; however, the basic principles of such a membrane-reshaping
    process remain uncharacterized. Here, we present a quantitative analysis of nuclear
    membrane assembly in mammalian cells using time-lapse microscopy. From the initial
    recruitment of ER tubules to chromatin, the formation of a membrane-enclosed,
    transport-competent nucleus occurs within ∼12 min. Overexpression of the ER tubule-forming
    proteins reticulon 3, reticulon 4, and DP1 inhibits NE formation and nuclear expansion,
    whereas their knockdown accelerates nuclear assembly. This suggests that the transition
    from membrane tubules to sheets is rate-limiting for nuclear assembly. Our results
    provide evidence that ER-shaping proteins are directly involved in the reconstruction
    of the nuclear compartment and that morphological restructuring of the ER is the
    principal mechanism of NE formation in vivo.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel J.
  full_name: Anderson, Daniel J.
  last_name: Anderson
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Anderson DJ, Hetzer M. Reshaping of the endoplasmic reticulum limits the rate
    for nuclear envelope formation. <i>Journal of Cell Biology</i>. 2008;182(5):911-924.
    doi:<a href="https://doi.org/10.1083/jcb.200805140">10.1083/jcb.200805140</a>
  apa: Anderson, D. J., &#38; Hetzer, M. (2008). Reshaping of the endoplasmic reticulum
    limits the rate for nuclear envelope formation. <i>Journal of Cell Biology</i>.
    Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.200805140">https://doi.org/10.1083/jcb.200805140</a>
  chicago: Anderson, Daniel J., and Martin Hetzer. “Reshaping of the Endoplasmic Reticulum
    Limits the Rate for Nuclear Envelope Formation.” <i>Journal of Cell Biology</i>.
    Rockefeller University Press, 2008. <a href="https://doi.org/10.1083/jcb.200805140">https://doi.org/10.1083/jcb.200805140</a>.
  ieee: D. J. Anderson and M. Hetzer, “Reshaping of the endoplasmic reticulum limits
    the rate for nuclear envelope formation,” <i>Journal of Cell Biology</i>, vol.
    182, no. 5. Rockefeller University Press, pp. 911–924, 2008.
  ista: Anderson DJ, Hetzer M. 2008. Reshaping of the endoplasmic reticulum limits
    the rate for nuclear envelope formation. Journal of Cell Biology. 182(5), 911–924.
  mla: Anderson, Daniel J., and Martin Hetzer. “Reshaping of the Endoplasmic Reticulum
    Limits the Rate for Nuclear Envelope Formation.” <i>Journal of Cell Biology</i>,
    vol. 182, no. 5, Rockefeller University Press, 2008, pp. 911–24, doi:<a href="https://doi.org/10.1083/jcb.200805140">10.1083/jcb.200805140</a>.
  short: D.J. Anderson, M. Hetzer, Journal of Cell Biology 182 (2008) 911–924.
date_created: 2022-04-07T07:55:23Z
date_published: 2008-09-08T00:00:00Z
date_updated: 2024-10-14T11:29:29Z
day: '08'
doi: 10.1083/jcb.200805140
extern: '1'
external_id:
  pmid:
  - '18779370'
intvolume: '       182'
issue: '5'
keyword:
- Cell Biology
language:
- iso: eng
month: '09'
oa_version: None
page: 911-924
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope
  formation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 182
year: '2008'
...
---
_id: '11126'
abstract:
- lang: eng
  text: Nuclear import of the two uracil-rich small nuclear ribonucleoprotein (U snRNP)
    components U1A and U2B′′ is mediated by unusually long and complex nuclear localization
    signals (NLSs). Here we investigate nuclear import of U1A and U2B′′ in vitro and
    demonstrate that it occurs by an active, saturable process. Several lines of evidence
    suggest that import of the two proteins occurs by an import mechanism different
    to those characterized previously. No cross competition is seen with a variety
    of previously studied NLSs. In contrast to import mediated by members of the importin-β
    family of nucleocytoplasmic transport receptors, U1A/U2B′′ import is not inhibited
    by either nonhydrolyzable guanosine triphosphate (GTP) analogues or by a mutant
    of the GTPase Ran that is incapable of GTP hydrolysis. Adenosine triphosphate
    is capable of supporting U1A and U2B′′ import, whereas neither nonhydrolyzable
    adenosine triphosphate analogues nor GTP can do so. U1A and U2B′′ import in vitro
    does not require the addition of soluble cytosolic proteins, but a factor or factors
    required for U1A and U2B′′ import remains tightly associated with the nuclear
    fraction of conventionally permeabilized cells. This activity can be solubilized
    in the presence of elevated MgCl2. These data suggest that U1A and U2B′′ import
    into the nucleus occurs by a hitherto uncharacterized mechanism.
article_processing_charge: No
article_type: original
author:
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Iain W.
  full_name: Mattaj, Iain W.
  last_name: Mattaj
citation:
  ama: Hetzer M, Mattaj IW. An Atp-dependent, Ran-independent mechanism for nuclear
    import of the U1a and U2b′′ spliceosome proteins. <i>Journal of Cell Biology</i>.
    2000;148(2):293-304. doi:<a href="https://doi.org/10.1083/jcb.148.2.293">10.1083/jcb.148.2.293</a>
  apa: Hetzer, M., &#38; Mattaj, I. W. (2000). An Atp-dependent, Ran-independent mechanism
    for nuclear import of the U1a and U2b′′ spliceosome proteins. <i>Journal of Cell
    Biology</i>. Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.148.2.293">https://doi.org/10.1083/jcb.148.2.293</a>
  chicago: Hetzer, Martin, and Iain W. Mattaj. “An Atp-Dependent, Ran-Independent
    Mechanism for Nuclear Import of the U1a and U2b′′ Spliceosome Proteins.” <i>Journal
    of Cell Biology</i>. Rockefeller University Press, 2000. <a href="https://doi.org/10.1083/jcb.148.2.293">https://doi.org/10.1083/jcb.148.2.293</a>.
  ieee: M. Hetzer and I. W. Mattaj, “An Atp-dependent, Ran-independent mechanism for
    nuclear import of the U1a and U2b′′ spliceosome proteins,” <i>Journal of Cell
    Biology</i>, vol. 148, no. 2. Rockefeller University Press, pp. 293–304, 2000.
  ista: Hetzer M, Mattaj IW. 2000. An Atp-dependent, Ran-independent mechanism for
    nuclear import of the U1a and U2b′′ spliceosome proteins. Journal of Cell Biology.
    148(2), 293–304.
  mla: Hetzer, Martin, and Iain W. Mattaj. “An Atp-Dependent, Ran-Independent Mechanism
    for Nuclear Import of the U1a and U2b′′ Spliceosome Proteins.” <i>Journal of Cell
    Biology</i>, vol. 148, no. 2, Rockefeller University Press, 2000, pp. 293–304,
    doi:<a href="https://doi.org/10.1083/jcb.148.2.293">10.1083/jcb.148.2.293</a>.
  short: M. Hetzer, I.W. Mattaj, Journal of Cell Biology 148 (2000) 293–304.
date_created: 2022-04-07T07:57:49Z
date_published: 2000-01-24T00:00:00Z
date_updated: 2022-07-18T08:58:29Z
day: '24'
doi: 10.1083/jcb.148.2.293
extern: '1'
external_id:
  pmid:
  - '10648562'
intvolume: '       148'
issue: '2'
keyword:
- Cell Biology
language:
- iso: eng
month: '01'
oa_version: None
page: 293-304
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: An Atp-dependent, Ran-independent mechanism for nuclear import of the U1a and
  U2b′′ spliceosome proteins
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 148
year: '2000'
...
