---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21985'
abstract:
- lang: eng
  text: Upon infecting a bacterial cell, temperate phages make a decision between
    lysis and lysogeny. While research has previously explored how phages sense environmental
    information to make this choice, most studies have focused on modelling known
    mechanisms that impact the decision. These mechanisms tell us what environmental
    information the phage does respond to, but not what it should respond to, as the
    signals sensed by the phage may serve as proxies for other sources of information.
    Here, using a mechanism-agnostic population dynamics model, we find that irreversible
    phage binding to lysogens protects sensitive host cells from infection. This results
    in lysogens being an additional environmental factor that the phage should sense
    while making its decision to undergo lysis or lysogeny. Using this model, we derive
    a responsive lysogeny probability for phages that respond to both cell and lysogen
    densities optimized towards invading phage-occupied systems, and show that it
    is more capable of invading and resisting invasion than phage with fixed lysogeny
    probabilities across different environmental conditions.
acknowledgement: We thank Fyodor Kondrashov and Gašper Tkačik for valuable input and
  guidance in building the model, and Stephen Abedon as well as the two anonymous
  reviewers for the comments provided on the manuscript.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Bryan
  full_name: Wu, Bryan
  id: 3C521EBA-F248-11E8-B48F-1D18A9856A87
  last_name: Wu
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
citation:
  ama: Wu B, Guet CC. Responsive lysogeny under nonproductive phage binding. <i>Evolution</i>.
    2026;80(6):1365-1373. doi:<a href="https://doi.org/10.1093/evolut/qpag061">10.1093/evolut/qpag061</a>
  apa: Wu, B., &#38; Guet, C. C. (2026). Responsive lysogeny under nonproductive phage
    binding. <i>Evolution</i>. Oxford University Press. <a href="https://doi.org/10.1093/evolut/qpag061">https://doi.org/10.1093/evolut/qpag061</a>
  chicago: Wu, Bryan, and Calin C Guet. “Responsive Lysogeny under Nonproductive Phage
    Binding.” <i>Evolution</i>. Oxford University Press, 2026. <a href="https://doi.org/10.1093/evolut/qpag061">https://doi.org/10.1093/evolut/qpag061</a>.
  ieee: B. Wu and C. C. Guet, “Responsive lysogeny under nonproductive phage binding,”
    <i>Evolution</i>, vol. 80, no. 6. Oxford University Press, pp. 1365–1373, 2026.
  ista: Wu B, Guet CC. 2026. Responsive lysogeny under nonproductive phage binding.
    Evolution. 80(6), 1365–1373.
  mla: Wu, Bryan, and Calin C. Guet. “Responsive Lysogeny under Nonproductive Phage
    Binding.” <i>Evolution</i>, vol. 80, no. 6, Oxford University Press, 2026, pp.
    1365–73, doi:<a href="https://doi.org/10.1093/evolut/qpag061">10.1093/evolut/qpag061</a>.
  short: B. Wu, C.C. Guet, Evolution 80 (2026) 1365–1373.
corr_author: '1'
date_created: 2026-06-10T07:38:12Z
date_published: 2026-06-01T00:00:00Z
date_updated: 2026-06-16T12:46:02Z
day: '01'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.1093/evolut/qpag061
external_id:
  pmid:
  - '41968110'
file:
- access_level: open_access
  checksum: 6d0f48566a7a36cb0c469e1968c9cb1c
  content_type: application/pdf
  creator: dernst
  date_created: 2026-06-16T12:45:09Z
  date_updated: 2026-06-16T12:45:09Z
  file_id: '22015'
  file_name: 2026_Evolution_Wu.pdf
  file_size: 2077781
  relation: main_file
  success: 1
file_date_updated: 2026-06-16T12:45:09Z
has_accepted_license: '1'
intvolume: '        80'
issue: '6'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '06'
oa: 1
oa_version: Published Version
page: 1365-1373
pmid: 1
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/theguetlab/responsive-lysogeny
scopus_import: '1'
status: public
title: Responsive lysogeny under nonproductive phage binding
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 80
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19876'
abstract:
- lang: eng
  text: "Assortative mating and sexual selection are widespread in nature and can
    play an important role in speciation by facilitating the buildup and maintenance
    of reproductive isolation (RI). However, their contribution to genome-wide suppression
    of gene flow during RI is rarely quantified.\r\nHere, we consider a polygenic
    “magic” trait that is divergently selected across two populations connected by
    migration, while also serving as the basis of assortative mating, thus generating
    sexual selection on one or both sexes. We obtain theoretical predictions for divergence
    at\r\nindividual trait loci by assuming that the effect of all other loci on any
    locus can be encapsulated via an effective migration rate, which bears a simple
    relationship to measurable fitness components of migrants and various early-generation
    hybrids. Our analysis clarifies how “tipping\r\npoints” (characterized by an abrupt
    collapse of adaptive divergence) arise, and when assortative mating can shift
    the critical level of migration beyond which divergence collapses. We quantify
    the relative contributions of viability and sexual selection to genome-wide barriers
    to gene\r\nflow and discuss how these depend on existing divergence levels. Our
    results suggest that effective migration rates provide a useful way of understanding
    genomic divergence, even in scenarios involving multiple, interacting mechanisms
    of RI. "
acknowledged_ssus:
- _id: ScienComp
acknowledgement: We thank Nick Barton for useful comments on the manuscript. This
  research was supported by the Scientific Service Units (SSU) of Institute of Science
  and Technology Austria (ISTA) through resources provided by Scientific Computing
  (SciComp).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Himani
  full_name: Sachdeva, Himani
  last_name: Sachdeva
citation:
  ama: Surendranadh P, Sachdeva H. Effect of assortative mating and sexual selection
    on polygenic barriers to gene flow. <i>Evolution</i>. 2025;79(7):1185-1198. doi:<a
    href="https://doi.org/10.1093/evolut/qpaf047">10.1093/evolut/qpaf047</a>
  apa: Surendranadh, P., &#38; Sachdeva, H. (2025). Effect of assortative mating and
    sexual selection on polygenic barriers to gene flow. <i>Evolution</i>. Oxford
    University Press. <a href="https://doi.org/10.1093/evolut/qpaf047">https://doi.org/10.1093/evolut/qpaf047</a>
  chicago: Surendranadh, Parvathy, and Himani Sachdeva. “Effect of Assortative Mating
    and Sexual Selection on Polygenic Barriers to Gene Flow.” <i>Evolution</i>. Oxford
    University Press, 2025. <a href="https://doi.org/10.1093/evolut/qpaf047">https://doi.org/10.1093/evolut/qpaf047</a>.
  ieee: P. Surendranadh and H. Sachdeva, “Effect of assortative mating and sexual
    selection on polygenic barriers to gene flow,” <i>Evolution</i>, vol. 79, no.
    7. Oxford University Press, pp. 1185–1198, 2025.
  ista: Surendranadh P, Sachdeva H. 2025. Effect of assortative mating and sexual
    selection on polygenic barriers to gene flow. Evolution. 79(7), 1185–1198.
  mla: Surendranadh, Parvathy, and Himani Sachdeva. “Effect of Assortative Mating
    and Sexual Selection on Polygenic Barriers to Gene Flow.” <i>Evolution</i>, vol.
    79, no. 7, Oxford University Press, 2025, pp. 1185–98, doi:<a href="https://doi.org/10.1093/evolut/qpaf047">10.1093/evolut/qpaf047</a>.
  short: P. Surendranadh, H. Sachdeva, Evolution 79 (2025) 1185–1198.
corr_author: '1'
date_created: 2025-06-23T13:51:00Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2025-12-30T08:44:13Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/evolut/qpaf047
external_id:
  isi:
  - '001490646300001'
file:
- access_level: open_access
  checksum: 288ca936cef794d68a55356e70671846
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  creator: dernst
  date_created: 2025-12-30T08:43:33Z
  date_updated: 2025-12-30T08:43:33Z
  file_id: '20898'
  file_name: 2025_Evolution_Surendranadh.pdf
  file_size: 2784295
  relation: main_file
  success: 1
file_date_updated: 2025-12-30T08:43:33Z
has_accepted_license: '1'
intvolume: '        79'
isi: 1
issue: '7'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: 1185-1198
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
  record:
  - id: '18712'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Effect of assortative mating and sexual selection on polygenic barriers to
  gene flow
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 79
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20044'
abstract:
- lang: eng
  text: Genetic trade-offs—which occur when variants that are beneficial in some contexts
    of natural selection are harmful in others—can influence a wide range of evolutionary
    phenomena, from the maintenance of genetic variation to the evolution of aging
    and sex differences. An extensive body of evolutionary theory has focused on the
    consequences of such trade-offs, and recent analyses of Fisher’s geometric model
    have further quantified the expected proportion of new mutations that exhibit
    trade-offs. However, the theory remains silent regarding the prevalence of trade-offs
    among the variants that contribute to adaptation. Here, we extend Fisher’s geometric
    model to predict the prevalence of trade-offs among the adaptive mutations that
    become established or fixed in a population. We consider trade-offs between sexes,
    habitats, fitness components, and temporally fluctuating environments. In all
    4 scenarios, trade-off alleles are consistently under-represented among established
    relative to new beneficial mutations—an effect that arises from the greater susceptibility
    of trade-off alleles to genetic drift. Adaptation during a population size decline
    exacerbates this deficit of trade-offs among established mutations, whereas population
    expansions dampen it. Consequently, threatened populations should primarily adapt
    using unconditionally beneficial alleles, while invasive populations are more
    prone to adaptation using variants that exhibit trade-offs.
acknowledgement: 'Support for this research came from the European Society of Evolutionary
  Biology (ESEB) through a “Special Topics Network” grant. Further financial support
  came from the European Research Council (ERC-2023-STG916 #101117517, to C.O.), the
  Swedish Research Council (#2022-03603, to C.O.; #2020‑03123, to E.I.S.), the Research
  Council of Norway (Norges forskningsråd #302619, to D.G.), the Alexander von Humboldt
  Foundation and the GenEvo graduate school (to H.K.), the Foundation for Zoological
  Research and the Birgitta Sintring Foundation (#S2024-0007, to M.K.Z.), a postdoctoral
  fellowship from the Consejo Nacional de Humanidades, Ciencias y Tecnología (to A.N.B.),
  and a H2020 Marie Skłodowska-Curie COFUND Action fellowship (#101034413, to F.R.).
  We wish to express our deepest gratitude to Lotte de Vries for extensive discussion
  of the project, rederiving some of our results, and providing comments on an earlier
  version of the manuscript, and to the European Society of Evolutionary Biology (ESEB)
  for a “Special Topics Network” grant that supported workshops that initiated this
  collaboration and facilitated many new ideas and friendships. We also thank two
  anonymous reviewers for their thoughtful comments and suggestions that helped us
  to substantially improve upon the original version of the article.'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Tim
  full_name: Connallon, Tim
  last_name: Connallon
- first_name: Peter
  full_name: Czuppon, Peter
  last_name: Czuppon
- first_name: Colin
  full_name: Olito, Colin
  last_name: Olito
- first_name: Debora
  full_name: Goedert, Debora
  last_name: Goedert
- first_name: Hanna
  full_name: Kokko, Hanna
  last_name: Kokko
- first_name: Angela
  full_name: Nava-Bolaños, Angela
  last_name: Nava-Bolaños
- first_name: Sofie
  full_name: Nilén, Sofie
  last_name: Nilén
- first_name: Erik I
  full_name: Svensson, Erik I
  last_name: Svensson
- first_name: Martyna
  full_name: Zwoinska, Martyna
  last_name: Zwoinska
- first_name: Ludovic
  full_name: Dutoit, Ludovic
  last_name: Dutoit
- first_name: Filip
  full_name: Ruzicka, Filip
  id: 347955dd-57b0-11ee-9095-c28bdd368f4b
  last_name: Ruzicka
citation:
  ama: Connallon T, Czuppon P, Olito C, et al. Predicting the prevalence of genetic
    trade-offs among adaptive substitutions. <i>Evolution</i>. 2025;79(7):1243-1255.
    doi:<a href="https://doi.org/10.1093/evolut/qpaf061">10.1093/evolut/qpaf061</a>
  apa: Connallon, T., Czuppon, P., Olito, C., Goedert, D., Kokko, H., Nava-Bolaños,
    A., … Ruzicka, F. (2025). Predicting the prevalence of genetic trade-offs among
    adaptive substitutions. <i>Evolution</i>. Oxford University Press. <a href="https://doi.org/10.1093/evolut/qpaf061">https://doi.org/10.1093/evolut/qpaf061</a>
  chicago: Connallon, Tim, Peter Czuppon, Colin Olito, Debora Goedert, Hanna Kokko,
    Angela Nava-Bolaños, Sofie Nilén, et al. “Predicting the Prevalence of Genetic
    Trade-Offs among Adaptive Substitutions.” <i>Evolution</i>. Oxford University
    Press, 2025. <a href="https://doi.org/10.1093/evolut/qpaf061">https://doi.org/10.1093/evolut/qpaf061</a>.
  ieee: T. Connallon <i>et al.</i>, “Predicting the prevalence of genetic trade-offs
    among adaptive substitutions,” <i>Evolution</i>, vol. 79, no. 7. Oxford University
    Press, pp. 1243–1255, 2025.
  ista: Connallon T, Czuppon P, Olito C, Goedert D, Kokko H, Nava-Bolaños A, Nilén
    S, Svensson EI, Zwoinska M, Dutoit L, Ruzicka F. 2025. Predicting the prevalence
    of genetic trade-offs among adaptive substitutions. Evolution. 79(7), 1243–1255.
  mla: Connallon, Tim, et al. “Predicting the Prevalence of Genetic Trade-Offs among
    Adaptive Substitutions.” <i>Evolution</i>, vol. 79, no. 7, Oxford University Press,
    2025, pp. 1243–55, doi:<a href="https://doi.org/10.1093/evolut/qpaf061">10.1093/evolut/qpaf061</a>.
  short: T. Connallon, P. Czuppon, C. Olito, D. Goedert, H. Kokko, A. Nava-Bolaños,
    S. Nilén, E.I. Svensson, M. Zwoinska, L. Dutoit, F. Ruzicka, Evolution 79 (2025)
    1243–1255.
date_created: 2025-07-21T07:57:28Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2025-09-30T14:06:38Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1093/evolut/qpaf061
ec_funded: 1
external_id:
  isi:
  - '001477180800001'
file:
- access_level: open_access
  checksum: 68c4c996d0e8c9ee3d4fb61bca75b31a
  content_type: application/pdf
  creator: dernst
  date_created: 2025-07-22T10:04:57Z
  date_updated: 2025-07-22T10:04:57Z
  file_id: '20068'
  file_name: 2025_Evolution_Connallon.pdf
  file_size: 8150623
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  success: 1
file_date_updated: 2025-07-22T10:04:57Z
has_accepted_license: '1'
intvolume: '        79'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 1243-1255
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Predicting the prevalence of genetic trade-offs among adaptive substitutions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 79
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20531'
abstract:
- lang: eng
  text: Genetic drift is potentially an important component of selection for sex,
    as it is a source of statistical associations between alleles at selected loci.
    By increasing local drift, population structure may thus amplify the evolutionary
    advantage of sex. However, most previous models have focused either on haploid
    populations or on diploid populations without spatial structure. In this article,
    we use two- and three-locus analytical models and multilocus simulations to explore
    selection for sex in a diploid population structured according to the island model,
    in the presence of recurrent deleterious mutations. Our results show that selection
    generally favors an intermediate rate of sex that decreases as the direct cost
    of sex increases and increases moderately as the degree of population structure
    increases. Selection for sex is generated by multiple effects involving genetic
    associations within and between loci. When selection occurs at many loci, it is
    generally dominated by interference effects involving deleterious alleles at different
    loci, captured by our three-locus model. In our multilocus simulations, we observed
    an irreversible spread of asexual mutants under strong costs of sex, and when
    deleterious mutations are partially recessive. However, population structure may
    prevent this spread of asexual mutants when dispersal rates are sufficiently small.
acknowledgement: L.F. is funded by the NOMIS-ISTA Fellowship Program. We thank Colin
  Olito and two anonymous reviewers for helpful comments, and the bioinformatics and
  computing services at Roscoff’s Biological Station (Abims platform) and at Institute
  of Science and Technology Austria for computing time.
article_processing_charge: No
article_type: original
author:
- first_name: Louise
  full_name: Fouqueau, Louise
  id: 1676e173-8143-11ed-8927-fe165216a93f
  last_name: Fouqueau
  orcid: 0000-0003-0371-9339
- first_name: Denis
  full_name: Roze, Denis
  last_name: Roze
citation:
  ama: Fouqueau L, Roze D. Deleterious mutations and selection for sex in spatially
    structured, diploid populations. <i>Evolution</i>. 2025;79(10):2167-2180. doi:<a
    href="https://doi.org/10.1093/evolut/qpaf143">10.1093/evolut/qpaf143</a>
  apa: Fouqueau, L., &#38; Roze, D. (2025). Deleterious mutations and selection for
    sex in spatially structured, diploid populations. <i>Evolution</i>. Oxford University
    Press. <a href="https://doi.org/10.1093/evolut/qpaf143">https://doi.org/10.1093/evolut/qpaf143</a>
  chicago: Fouqueau, Louise, and Denis Roze. “Deleterious Mutations and Selection
    for Sex in Spatially Structured, Diploid Populations.” <i>Evolution</i>. Oxford
    University Press, 2025. <a href="https://doi.org/10.1093/evolut/qpaf143">https://doi.org/10.1093/evolut/qpaf143</a>.
  ieee: L. Fouqueau and D. Roze, “Deleterious mutations and selection for sex in spatially
    structured, diploid populations,” <i>Evolution</i>, vol. 79, no. 10. Oxford University
    Press, pp. 2167–2180, 2025.
  ista: Fouqueau L, Roze D. 2025. Deleterious mutations and selection for sex in spatially
    structured, diploid populations. Evolution. 79(10), 2167–2180.
  mla: Fouqueau, Louise, and Denis Roze. “Deleterious Mutations and Selection for
    Sex in Spatially Structured, Diploid Populations.” <i>Evolution</i>, vol. 79,
    no. 10, Oxford University Press, 2025, pp. 2167–80, doi:<a href="https://doi.org/10.1093/evolut/qpaf143">10.1093/evolut/qpaf143</a>.
  short: L. Fouqueau, D. Roze, Evolution 79 (2025) 2167–2180.
date_created: 2025-10-26T23:01:34Z
date_published: 2025-10-17T00:00:00Z
date_updated: 2025-12-01T15:03:54Z
day: '17'
department:
- _id: NiBa
doi: 10.1093/evolut/qpaf143
external_id:
  isi:
  - '001547542300001'
  pmid:
  - '40668071'
intvolume: '        79'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2025.01.22.634382
month: '10'
oa: 1
oa_version: Preprint
page: 2167-2180
pmid: 1
project:
- _id: 9B861AAC-BA93-11EA-9121-9846C619BF3A
  name: NOMIS Fellowship Program
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Deleterious mutations and selection for sex in spatially structured, diploid
  populations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 79
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18307'
abstract:
- lang: eng
  text: Vaccination is the most effective tool to control infectious diseases. However,
    the evolution of vaccine resistance, exemplified by vaccine resistance in SARS-CoV-2,
    remains a concern. Here, we model complex vaccination strategies against a pathogen
    with multiple epitopes—molecules targeted by the vaccine. We found that a vaccine
    targeting one epitope was ineffective in preventing vaccine escape. Vaccine resistance
    in highly infectious pathogens was prevented by the full-epitope vaccine, that
    is, one targeting all available epitopes, but only when the rate of pathogen evolution
    was low. Strikingly, a bet-hedging strategy of random administration of vaccines
    targeting different epitopes was the most effective in preventing vaccine resistance
    in pathogens with the low rate of infection and high rate of evolution. Thus,
    complex vaccination strategies, when biologically feasible, may be preferable
    to the currently used single-vaccine approaches for long-term control of disease
    outbreaks, especially when applied to livestock with near 100% vaccination rates.
acknowledgement: We thank Raimundo Julian Saona Urmeneta, Maike Morrison, Sergey Kryazhimskiy,
  Hiroki Ishikawa, Simone Pigolotti, and Shingo Miyauchi for fruitful discussions.
  We also thank the participants of the FRISBI seminar at ISTA for useful comments.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Simon
  full_name: Rella, Simon
  id: B4765ACA-AA38-11E9-AC9A-0930E6697425
  last_name: Rella
- first_name: Yuliya A.
  full_name: Kulikova, Yuliya A.
  last_name: Kulikova
- first_name: Aygul
  full_name: Minnegalieva, Aygul
  id: 87DF77F0-1D9A-11EA-B6AE-CE443DDC885E
  last_name: Minnegalieva
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: 'Rella S, Kulikova YA, Minnegalieva A, Kondrashov F. Complex vaccination strategies
    prevent the emergence of vaccine resistance. <i>Evolution: International journal
    of organic evolution</i>. 2024;78(10):1722-1738. doi:<a href="https://doi.org/10.1093/evolut/qpae106">10.1093/evolut/qpae106</a>'
  apa: 'Rella, S., Kulikova, Y. A., Minnegalieva, A., &#38; Kondrashov, F. (2024).
    Complex vaccination strategies prevent the emergence of vaccine resistance. <i>Evolution:
    International Journal of Organic Evolution</i>. Oxford University Press. <a href="https://doi.org/10.1093/evolut/qpae106">https://doi.org/10.1093/evolut/qpae106</a>'
  chicago: 'Rella, Simon, Yuliya A. Kulikova, Aygul Minnegalieva, and Fyodor Kondrashov.
    “Complex Vaccination Strategies Prevent the Emergence of Vaccine Resistance.”
    <i>Evolution: International Journal of Organic Evolution</i>. Oxford University
    Press, 2024. <a href="https://doi.org/10.1093/evolut/qpae106">https://doi.org/10.1093/evolut/qpae106</a>.'
  ieee: 'S. Rella, Y. A. Kulikova, A. Minnegalieva, and F. Kondrashov, “Complex vaccination
    strategies prevent the emergence of vaccine resistance,” <i>Evolution: International
    journal of organic evolution</i>, vol. 78, no. 10. Oxford University Press, pp.
    1722–1738, 2024.'
  ista: 'Rella S, Kulikova YA, Minnegalieva A, Kondrashov F. 2024. Complex vaccination
    strategies prevent the emergence of vaccine resistance. Evolution: International
    journal of organic evolution. 78(10), 1722–1738.'
  mla: 'Rella, Simon, et al. “Complex Vaccination Strategies Prevent the Emergence
    of Vaccine Resistance.” <i>Evolution: International Journal of Organic Evolution</i>,
    vol. 78, no. 10, Oxford University Press, 2024, pp. 1722–38, doi:<a href="https://doi.org/10.1093/evolut/qpae106">10.1093/evolut/qpae106</a>.'
  short: 'S. Rella, Y.A. Kulikova, A. Minnegalieva, F. Kondrashov, Evolution: International
    Journal of Organic Evolution 78 (2024) 1722–1738.'
corr_author: '1'
date_created: 2024-10-13T22:01:50Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2026-07-29T12:57:48Z
day: '01'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.1093/evolut/qpae106
external_id:
  isi:
  - '001286581900001'
  pmid:
  - '38990788'
file:
- access_level: open_access
  checksum: 5c6e8475bb88b07d424a5130d5e91e74
  content_type: application/pdf
  creator: dernst
  date_created: 2024-10-21T09:34:50Z
  date_updated: 2024-10-21T09:34:50Z
  file_id: '18453'
  file_name: 2024_Evolution_Rella.pdf
  file_size: 29360811
  relation: main_file
  success: 1
file_date_updated: 2024-10-21T09:34:50Z
has_accepted_license: '1'
intvolume: '        78'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 1722-1738
pmid: 1
publication: 'Evolution: International journal of organic evolution'
publication_identifier:
  eissn:
  - 1558-5646
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/Simon-Re/complex-vaccination
  record:
  - id: '14862'
    relation: research_data
    status: public
  - id: '20811'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Complex vaccination strategies prevent the emergence of vaccine resistance
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 78
year: '2024'
...
---
_id: '12514'
abstract:
- lang: eng
  text: The concept of a “speciation continuum” has gained popularity in recent decades.
    It emphasizes speciation as a continuous process that may be studied by comparing
    contemporary population pairs that show differing levels of divergence. In their
    recent perspective article in Evolution, Stankowski and Ravinet provided a valuable
    service by formally defining the speciation continuum as a continuum of reproductive
    isolation, based on opinions gathered from a survey of speciation researchers.
    While we agree that the speciation continuum has been a useful concept to advance
    the understanding of the speciation process, some intrinsic limitations exist.
    Here, we advocate for a multivariate extension, the speciation hypercube, first
    proposed by Dieckmann et al. in 2004, but rarely used since. We extend the idea
    of the speciation cube and suggest it has strong conceptual and practical advantages
    over a one-dimensional model. We illustrate how the speciation hypercube can be
    used to visualize and compare different speciation trajectories, providing new
    insights into the processes and mechanisms of speciation. A key strength of the
    speciation hypercube is that it provides a unifying framework for speciation research,
    as it allows questions from apparently disparate subfields to be addressed in
    a single conceptual model.
acknowledgement: "The authors of this article were supported by LMU Munich (J.B.W.W.),
  a James S. McDonnell Foundation postdoctoral fellowship (A.K.H.). P.N. received
  funding from the European Research Council (ERC) under the European Union’s Horizon
  2020 research and innovation program (Grant agreement No. 770826 EE-Dynamics).\r\nWe
  thank participants in the 2019 Gordon Conference on Speciation for the extensive
  conversation on this topic. Thanks to Dan Funk for providing permission to use data
  from Funk et al. 2006, and for comments on the manuscript."
article_processing_charge: No
article_type: original
author:
- first_name: Daniel I.
  full_name: Bolnick, Daniel I.
  last_name: Bolnick
- first_name: Amanda K.
  full_name: Hund, Amanda K.
  last_name: Hund
- first_name: Patrik
  full_name: Nosil, Patrik
  last_name: Nosil
- first_name: Foen
  full_name: Peng, Foen
  last_name: Peng
- first_name: Mark
  full_name: Ravinet, Mark
  last_name: Ravinet
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
- first_name: Swapna
  full_name: Subramanian, Swapna
  last_name: Subramanian
- first_name: Jochen B.W.
  full_name: Wolf, Jochen B.W.
  last_name: Wolf
- first_name: Roman
  full_name: Yukilevich, Roman
  last_name: Yukilevich
citation:
  ama: 'Bolnick DI, Hund AK, Nosil P, et al. A multivariate view of the speciation
    continuum. <i>Evolution: International journal of organic evolution</i>. 2023;77(1):318-328.
    doi:<a href="https://doi.org/10.1093/evolut/qpac004">10.1093/evolut/qpac004</a>'
  apa: 'Bolnick, D. I., Hund, A. K., Nosil, P., Peng, F., Ravinet, M., Stankowski,
    S., … Yukilevich, R. (2023). A multivariate view of the speciation continuum.
    <i>Evolution: International Journal of Organic Evolution</i>. Oxford University
    Press. <a href="https://doi.org/10.1093/evolut/qpac004">https://doi.org/10.1093/evolut/qpac004</a>'
  chicago: 'Bolnick, Daniel I., Amanda K. Hund, Patrik Nosil, Foen Peng, Mark Ravinet,
    Sean Stankowski, Swapna Subramanian, Jochen B.W. Wolf, and Roman Yukilevich. “A
    Multivariate View of the Speciation Continuum.” <i>Evolution: International Journal
    of Organic Evolution</i>. Oxford University Press, 2023. <a href="https://doi.org/10.1093/evolut/qpac004">https://doi.org/10.1093/evolut/qpac004</a>.'
  ieee: 'D. I. Bolnick <i>et al.</i>, “A multivariate view of the speciation continuum,”
    <i>Evolution: International journal of organic evolution</i>, vol. 77, no. 1.
    Oxford University Press, pp. 318–328, 2023.'
  ista: 'Bolnick DI, Hund AK, Nosil P, Peng F, Ravinet M, Stankowski S, Subramanian
    S, Wolf JBW, Yukilevich R. 2023. A multivariate view of the speciation continuum.
    Evolution: International journal of organic evolution. 77(1), 318–328.'
  mla: 'Bolnick, Daniel I., et al. “A Multivariate View of the Speciation Continuum.”
    <i>Evolution: International Journal of Organic Evolution</i>, vol. 77, no. 1,
    Oxford University Press, 2023, pp. 318–28, doi:<a href="https://doi.org/10.1093/evolut/qpac004">10.1093/evolut/qpac004</a>.'
  short: 'D.I. Bolnick, A.K. Hund, P. Nosil, F. Peng, M. Ravinet, S. Stankowski, S.
    Subramanian, J.B.W. Wolf, R. Yukilevich, Evolution: International Journal of Organic
    Evolution 77 (2023) 318–328.'
date_created: 2023-02-05T23:00:59Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2026-06-18T17:26:56Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1093/evolut/qpac004
external_id:
  isi:
  - '001021686300024'
  pmid:
  - '36622661'
intvolume: '        77'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1093/evolut/qpac004
month: '01'
oa: 1
oa_version: Published Version
page: 318-328
pmid: 1
publication: 'Evolution: International journal of organic evolution'
publication_identifier:
  eissn:
  - 1558-5646
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: A multivariate view of the speciation continuum
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 77
year: '2023'
...
---
_id: '14604'
abstract:
- lang: eng
  text: Sex chromosomes have evolved independently multiple times, but why some are
    conserved for more than 100 million years whereas others turnover rapidly remains
    an open question. Here, we examine the homology of sex chromosomes across nine
    orders of insects, plus the outgroup springtails. We find that the X chromosome
    is likely homologous across insects and springtails; the only exception is in
    the Lepidoptera, which has lost the X and now has a ZZ/ZW sex-chromosome system.
    These results suggest the ancestral insect X chromosome has persisted for more
    than 450 million years—the oldest known sex chromosome to date. Further, we propose
    that the shrinking of gene content the dipteran X chromosome has allowed for a
    burst of sex-chromosome turnover that is absent from other speciose insect orders.
acknowledgement: All computational analyses were performed on the server at Institute
  of Science and Technology Austria. We thank Marwan Elkrewi and Vincent Bett for
  analytical advice, and Tanja Schwander and Vincent Merel for useful discussions.
  We also thank Matthew Hahn for comments on an earlier version of the manuscript.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Melissa A
  full_name: Toups, Melissa A
  id: 4E099E4E-F248-11E8-B48F-1D18A9856A87
  last_name: Toups
  orcid: 0000-0002-9752-7380
- first_name: Beatriz
  full_name: Vicoso, Beatriz
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
citation:
  ama: Toups MA, Vicoso B. The X chromosome of insects likely predates the origin
    of class Insecta. <i>Evolution</i>. 2023;77(11):2504-2511. doi:<a href="https://doi.org/10.1093/evolut/qpad169">10.1093/evolut/qpad169</a>
  apa: Toups, M. A., &#38; Vicoso, B. (2023). The X chromosome of insects likely predates
    the origin of class Insecta. <i>Evolution</i>. Oxford University Press. <a href="https://doi.org/10.1093/evolut/qpad169">https://doi.org/10.1093/evolut/qpad169</a>
  chicago: Toups, Melissa A, and Beatriz Vicoso. “The X Chromosome of Insects Likely
    Predates the Origin of Class Insecta.” <i>Evolution</i>. Oxford University Press,
    2023. <a href="https://doi.org/10.1093/evolut/qpad169">https://doi.org/10.1093/evolut/qpad169</a>.
  ieee: M. A. Toups and B. Vicoso, “The X chromosome of insects likely predates the
    origin of class Insecta,” <i>Evolution</i>, vol. 77, no. 11. Oxford University
    Press, pp. 2504–2511, 2023.
  ista: Toups MA, Vicoso B. 2023. The X chromosome of insects likely predates the
    origin of class Insecta. Evolution. 77(11), 2504–2511.
  mla: Toups, Melissa A., and Beatriz Vicoso. “The X Chromosome of Insects Likely
    Predates the Origin of Class Insecta.” <i>Evolution</i>, vol. 77, no. 11, Oxford
    University Press, 2023, pp. 2504–11, doi:<a href="https://doi.org/10.1093/evolut/qpad169">10.1093/evolut/qpad169</a>.
  short: M.A. Toups, B. Vicoso, Evolution 77 (2023) 2504–2511.
date_created: 2023-11-26T23:00:54Z
date_published: 2023-11-02T00:00:00Z
date_updated: 2025-09-09T13:32:06Z
day: '02'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1093/evolut/qpad169
external_id:
  isi:
  - '001170341900014'
  pmid:
  - '37738212'
file:
- access_level: open_access
  checksum: b66dc10edae92d38918d534e64dda77c
  content_type: application/pdf
  creator: dernst
  date_created: 2023-11-28T08:12:15Z
  date_updated: 2023-11-28T08:12:15Z
  file_id: '14618'
  file_name: 2023_Evolution_Toups.pdf
  file_size: 1399102
  relation: main_file
  success: 1
file_date_updated: 2023-11-28T08:12:15Z
has_accepted_license: '1'
intvolume: '        77'
isi: 1
issue: '11'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 2504-2511
pmid: 1
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://git.ista.ac.at/bvicoso/veryoldx
  record:
  - id: '14616'
    relation: research_data
    status: public
  - id: '14617'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: The X chromosome of insects likely predates the origin of class Insecta
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 77
year: '2023'
...
---
_id: '11334'
abstract:
- lang: eng
  text: Hybridization is a common evolutionary process with multiple possible outcomes.
    In vertebrates, interspecific hybridization has repeatedly generated parthenogenetic
    hybrid species. However, it is unknown whether the generation of parthenogenetic
    hybrids is a rare outcome of frequent hybridization between sexual species within
    a genus or the typical outcome of rare hybridization events. Darevskia is a genus
    of rock lizards with both hybrid parthenogenetic and sexual species. Using capture
    sequencing, we estimate phylogenetic relationships and gene flow among the sexual
    species, to determine how introgressive hybridization relates to the origins of
    parthenogenetic hybrids. We find evidence for widespread hybridization with gene
    flow, both between recently diverged species and deep branches. Surprisingly,
    we find no signal of gene flow between parental species of the parthenogenetic
    hybrids, suggesting that the parental pairs were either reproductively or geographically
    isolated early in their divergence. The generation of parthenogenetic hybrids
    in Darevskia is, then, a rare outcome of the total occurrence of hybridization
    within the genus, but the typical outcome when specific species pairs hybridize.
    Our results question the conventional view that parthenogenetic lineages are generated
    by hybridization in a window of divergence. Instead, they suggest that some lineages
    possess specific properties that underpin successful parthenogenetic reproduction.
acknowledgement: "The authors thank A. van der Meijden and F. Ahmadzadeh for providing
  specimens and tissue samples, and A. Vardanyan, C. Corti, F. Jorge, and S. Drovetski
  for support during field work. The authors also thank S. Qiu for assistance with
  python scripting, S. Rocha for her support in BEAST analysis, and B. Wielstra for
  his comments on\r\na previous version of the manuscript. SF was funded by FCT grant
  SFRH/BD/81483/2011 (a PhD individual grant). AMW was funded by the European Union’s
  Horizon 2020 research and innovation programme under Marie Skłodowska-Curie grant
  agreement no. 797747. TS acknowledges funding from the Swiss National Science Foundation
  (grants\r\nPP00P3_170627 and 31003A_182495). The work was carried out under financial
  support of the projects “Preserving Armenian biodiversity: Joint Portuguese – Armenian
  program for training in modern conservation biology” of Gulbenkian Foundation (Portugal)
  and PTDC/BIABEC/101256/2008 of Fundação para a Ciência e a Tecnologia (FCT, Portugal)."
article_processing_charge: No
article_type: original
author:
- first_name: Susana
  full_name: Freitas, Susana
  last_name: Freitas
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Tanja
  full_name: Schwander, Tanja
  last_name: Schwander
- first_name: Marine
  full_name: Arakelyan, Marine
  last_name: Arakelyan
- first_name: Çetin
  full_name: Ilgaz, Çetin
  last_name: Ilgaz
- first_name: Yusuf
  full_name: Kumlutas, Yusuf
  last_name: Kumlutas
- first_name: David James
  full_name: Harris, David James
  last_name: Harris
- first_name: Miguel A.
  full_name: Carretero, Miguel A.
  last_name: Carretero
- first_name: Roger K.
  full_name: Butlin, Roger K.
  last_name: Butlin
citation:
  ama: 'Freitas S, Westram AM, Schwander T, et al. Parthenogenesis in Darevskia lizards:
    A rare outcome of common hybridization, not a common outcome of rare hybridization.
    <i>Evolution</i>. 2022;76(5):899-914. doi:<a href="https://doi.org/10.1111/evo.14462">10.1111/evo.14462</a>'
  apa: 'Freitas, S., Westram, A. M., Schwander, T., Arakelyan, M., Ilgaz, Ç., Kumlutas,
    Y., … Butlin, R. K. (2022). Parthenogenesis in Darevskia lizards: A rare outcome
    of common hybridization, not a common outcome of rare hybridization. <i>Evolution</i>.
    Wiley. <a href="https://doi.org/10.1111/evo.14462">https://doi.org/10.1111/evo.14462</a>'
  chicago: 'Freitas, Susana, Anja M Westram, Tanja Schwander, Marine Arakelyan, Çetin
    Ilgaz, Yusuf Kumlutas, David James Harris, Miguel A. Carretero, and Roger K. Butlin.
    “Parthenogenesis in Darevskia Lizards: A Rare Outcome of Common Hybridization,
    Not a Common Outcome of Rare Hybridization.” <i>Evolution</i>. Wiley, 2022. <a
    href="https://doi.org/10.1111/evo.14462">https://doi.org/10.1111/evo.14462</a>.'
  ieee: 'S. Freitas <i>et al.</i>, “Parthenogenesis in Darevskia lizards: A rare outcome
    of common hybridization, not a common outcome of rare hybridization,” <i>Evolution</i>,
    vol. 76, no. 5. Wiley, pp. 899–914, 2022.'
  ista: 'Freitas S, Westram AM, Schwander T, Arakelyan M, Ilgaz Ç, Kumlutas Y, Harris
    DJ, Carretero MA, Butlin RK. 2022. Parthenogenesis in Darevskia lizards: A rare
    outcome of common hybridization, not a common outcome of rare hybridization. Evolution.
    76(5), 899–914.'
  mla: 'Freitas, Susana, et al. “Parthenogenesis in Darevskia Lizards: A Rare Outcome
    of Common Hybridization, Not a Common Outcome of Rare Hybridization.” <i>Evolution</i>,
    vol. 76, no. 5, Wiley, 2022, pp. 899–914, doi:<a href="https://doi.org/10.1111/evo.14462">10.1111/evo.14462</a>.'
  short: S. Freitas, A.M. Westram, T. Schwander, M. Arakelyan, Ç. Ilgaz, Y. Kumlutas,
    D.J. Harris, M.A. Carretero, R.K. Butlin, Evolution 76 (2022) 899–914.
date_created: 2022-04-24T22:01:44Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2025-04-14T07:48:21Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
- _id: BeVi
doi: 10.1111/evo.14462
ec_funded: 1
external_id:
  isi:
  - '000781632500001'
  pmid:
  - '35323995'
file:
- access_level: open_access
  checksum: c27c025ae9afcf6c804d46a909775ee5
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-05T06:19:28Z
  date_updated: 2022-08-05T06:19:28Z
  file_id: '11729'
  file_name: 2022_Evolution_Freitas.pdf
  file_size: 2855214
  relation: main_file
  success: 1
file_date_updated: 2022-08-05T06:19:28Z
has_accepted_license: '1'
intvolume: '        76'
isi: 1
issue: '5'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '05'
oa: 1
oa_version: Published Version
page: 899-914
pmid: 1
project:
- _id: 265B41B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '797747'
  name: Theoretical and empirical approaches to understanding Parallel Adaptation
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization,
  not a common outcome of rare hybridization'
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 76
year: '2022'
...
---
_id: '12234'
abstract:
- lang: eng
  text: Hybrid speciation—the origin of new species resulting from the hybridization
    of genetically divergent lineages—was once considered rare, but genomic data suggest
    that it may occur more often than once thought. In this study, Noguerales and
    Ortego found genomic evidence supporting the hybrid origin of a grasshopper that
    is able to exploit a broader range of host plants than either of its putative
    parents.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
citation:
  ama: 'Stankowski S. Digest: On the origin of a possible hybrid species. <i>Evolution</i>.
    2022;76(11):2784-2785. doi:<a href="https://doi.org/10.1111/evo.14632">10.1111/evo.14632</a>'
  apa: 'Stankowski, S. (2022). Digest: On the origin of a possible hybrid species.
    <i>Evolution</i>. Wiley. <a href="https://doi.org/10.1111/evo.14632">https://doi.org/10.1111/evo.14632</a>'
  chicago: 'Stankowski, Sean. “Digest: On the Origin of a Possible Hybrid Species.”
    <i>Evolution</i>. Wiley, 2022. <a href="https://doi.org/10.1111/evo.14632">https://doi.org/10.1111/evo.14632</a>.'
  ieee: 'S. Stankowski, “Digest: On the origin of a possible hybrid species,” <i>Evolution</i>,
    vol. 76, no. 11. Wiley, pp. 2784–2785, 2022.'
  ista: 'Stankowski S. 2022. Digest: On the origin of a possible hybrid species. Evolution.
    76(11), 2784–2785.'
  mla: 'Stankowski, Sean. “Digest: On the Origin of a Possible Hybrid Species.” <i>Evolution</i>,
    vol. 76, no. 11, Wiley, 2022, pp. 2784–85, doi:<a href="https://doi.org/10.1111/evo.14632">10.1111/evo.14632</a>.'
  short: S. Stankowski, Evolution 76 (2022) 2784–2785.
corr_author: '1'
date_created: 2023-01-16T09:50:48Z
date_published: 2022-11-01T00:00:00Z
date_updated: 2025-06-11T13:40:40Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/evo.14632
external_id:
  isi:
  - '000855751600001'
  pmid:
  - '36112597'
file:
- access_level: open_access
  checksum: 4c0f05083b414ac0323a1b9ee1abc275
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-27T11:28:38Z
  date_updated: 2023-01-27T11:28:38Z
  file_id: '12425'
  file_name: 2022_Evolution_Stankowski.pdf
  file_size: 287282
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T11:28:38Z
has_accepted_license: '1'
intvolume: '        76'
isi: 1
issue: '11'
keyword:
- General Agricultural and Biological Sciences
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 2784-2785
pmid: 1
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Digest: On the origin of a possible hybrid species'
tmp:
  image: /images/cc_by_nc_nd.png
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  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 76
year: '2022'
...
---
_id: '12247'
abstract:
- lang: eng
  text: Chromosomal inversions have been shown to play a major role in a local adaptation
    by suppressing recombination between alternative arrangements and maintaining
    beneficial allele combinations. However, so far, their importance relative to
    the remaining genome remains largely unknown. Understanding the genetic architecture
    of adaptation requires better estimates of how loci of different effect sizes
    contribute to phenotypic variation. Here, we used three Swedish islands where
    the marine snail Littorina saxatilis has repeatedly evolved into two distinct
    ecotypes along a habitat transition. We estimated the contribution of inversion
    polymorphisms to phenotypic divergence while controlling for polygenic effects
    in the remaining genome using a quantitative genetics framework. We confirmed
    the importance of inversions but showed that contributions of loci outside inversions
    are of similar magnitude, with variable proportions dependent on the trait and
    the population. Some inversions showed consistent effects across all sites, whereas
    others exhibited site-specific effects, indicating that the genomic basis for
    replicated phenotypic divergence is only partly shared. The contributions of sexual
    dimorphism as well as environmental factors to phenotypic variation were significant
    but minor compared to inversions and polygenic background. Overall, this integrated
    approach provides insight into the multiple mechanisms contributing to parallel
    phenotypic divergence.
acknowledgement: We thank everyone who helped with fieldwork, snail processing, and
  DNA extractions, particularly Laura Brettell, Mårten Duvetorp, Juan Galindo, Anne-Lise
  Liabot, Irena Senčić, and Zuzanna Zagrodzka. We also thank Rui Faria and Jenny Larsson
  for their contributions, with inversions and shell shape respectively. KJ was funded
  by the Swedish research council Vetenskapsrådet, grant number 2017-03798. R.K.B.
  and E.K. were funded by the European Research Council (ERC-2015-AdG-693030-BARRIERS).
  R.K.B. was also funded by the Natural Environment Research Council and the Swedish
  Research Council Vetenskapsrådet.
article_processing_charge: No
article_type: original
author:
- first_name: Eva L.
  full_name: Koch, Eva L.
  last_name: Koch
- first_name: Mark
  full_name: Ravinet, Mark
  last_name: Ravinet
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Kerstin
  full_name: Johannesson, Kerstin
  last_name: Johannesson
- first_name: Roger K.
  full_name: Butlin, Roger K.
  last_name: Butlin
citation:
  ama: Koch EL, Ravinet M, Westram AM, Johannesson K, Butlin RK. Genetic architecture
    of repeated phenotypic divergence in Littorina saxatilis evolution. <i>Evolution</i>.
    2022;76(10):2332-2346. doi:<a href="https://doi.org/10.1111/evo.14602">10.1111/evo.14602</a>
  apa: Koch, E. L., Ravinet, M., Westram, A. M., Johannesson, K., &#38; Butlin, R.
    K. (2022). Genetic architecture of repeated phenotypic divergence in Littorina
    saxatilis evolution. <i>Evolution</i>. Wiley. <a href="https://doi.org/10.1111/evo.14602">https://doi.org/10.1111/evo.14602</a>
  chicago: Koch, Eva L., Mark Ravinet, Anja M Westram, Kerstin Johannesson, and Roger
    K. Butlin. “Genetic Architecture of Repeated Phenotypic Divergence in Littorina
    Saxatilis Evolution.” <i>Evolution</i>. Wiley, 2022. <a href="https://doi.org/10.1111/evo.14602">https://doi.org/10.1111/evo.14602</a>.
  ieee: E. L. Koch, M. Ravinet, A. M. Westram, K. Johannesson, and R. K. Butlin, “Genetic
    architecture of repeated phenotypic divergence in Littorina saxatilis evolution,”
    <i>Evolution</i>, vol. 76, no. 10. Wiley, pp. 2332–2346, 2022.
  ista: Koch EL, Ravinet M, Westram AM, Johannesson K, Butlin RK. 2022. Genetic architecture
    of repeated phenotypic divergence in Littorina saxatilis evolution. Evolution.
    76(10), 2332–2346.
  mla: Koch, Eva L., et al. “Genetic Architecture of Repeated Phenotypic Divergence
    in Littorina Saxatilis Evolution.” <i>Evolution</i>, vol. 76, no. 10, Wiley, 2022,
    pp. 2332–46, doi:<a href="https://doi.org/10.1111/evo.14602">10.1111/evo.14602</a>.
  short: E.L. Koch, M. Ravinet, A.M. Westram, K. Johannesson, R.K. Butlin, Evolution
    76 (2022) 2332–2346.
date_created: 2023-01-16T09:54:15Z
date_published: 2022-10-01T00:00:00Z
date_updated: 2023-08-04T09:42:11Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/evo.14602
external_id:
  isi:
  - '000848449100001'
  pmid:
  - '35994296'
file:
- access_level: open_access
  checksum: defd8a4bea61cf00a3c88d4a30e2728c
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-30T08:45:35Z
  date_updated: 2023-01-30T08:45:35Z
  file_id: '12439'
  file_name: 2022_Evolution_Koch.pdf
  file_size: 2990581
  relation: main_file
  success: 1
file_date_updated: 2023-01-30T08:45:35Z
has_accepted_license: '1'
intvolume: '        76'
isi: 1
issue: '10'
keyword:
- General Agricultural and Biological Sciences
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 2332-2346
pmid: 1
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '13066'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Genetic architecture of repeated phenotypic divergence in Littorina saxatilis
  evolution
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 76
year: '2022'
...
---
_id: '8743'
abstract:
- lang: eng
  text: 'Montane cloud forests are areas of high endemism, and are one of the more
    vulnerable terrestrial ecosystems to climate change. Thus, understanding how they
    both contribute to the generation of biodiversity, and will respond to ongoing
    climate change, are important and related challenges. The widely accepted model
    for montane cloud forest dynamics involves upslope forcing of their range limits
    with global climate warming. However, limited climate data provides some support
    for an alternative model, where range limits are forced downslope with climate
    warming. Testing between these two models is challenging, due to the inherent
    limitations of climate and pollen records. We overcome this with an alternative
    source of historical information, testing between competing model predictions
    using genomic data and demographic analyses for a species of beetle tightly associated
    to an oceanic island cloud forest. Results unequivocally support the alternative
    model: populations that were isolated at higher elevation peaks during the Last
    Glacial Maximum are now in contact and hybridizing at lower elevations. Our results
    suggest that genomic data are a rich source of information to further understand
    how montane cloud forest biodiversity originates, and how it is likely to be impacted
    by ongoing climate change.'
acknowledgement: 'This work was financed by the Spanish Agencia Estatal de Investigación
  (CGL2017‐85718‐P), awarded to BCE, and co‐financed by FEDER. It was also supported
  by the Spanish Ministerio de Ciencia, Innovación y Universidades (EQC2018‐004418‐P),
  awarded to BCE. AS‐C was funded by the Spanish Ministerio de Ciencia, Innovación
  y Universidades through an FPU PhD fellowship (FPU014/02948). The authors thank
  Instituto Tecnológico y de Energías Renovables (ITER), S.A for providing access
  to the Teide High‐Performance Computing facility (Teide‐HPC). Fieldwork was supported
  by collecting permit AFF 107/17 (sigma number 2017‐00572) kindly provided by the
  Cabildo of Tenerife. The authors wish to thank the following for field work and
  sample sorting and identification: A. J. Pérez‐Delgado, H. López, and C. Andújar.
  We also thank V. García‐Olivares for assistance with laboratory and bioinformatic
  work.'
article_processing_charge: No
article_type: original
author:
- first_name: Antonia
  full_name: Salces-Castellano, Antonia
  last_name: Salces-Castellano
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
- first_name: Paula
  full_name: Arribas, Paula
  last_name: Arribas
- first_name: Jairo
  full_name: Patino, Jairo
  last_name: Patino
- first_name: 'Dirk N. '
  full_name: 'Karger, Dirk N. '
  last_name: Karger
- first_name: Roger
  full_name: Butlin, Roger
  last_name: Butlin
- first_name: Brent C.
  full_name: Emerson, Brent C.
  last_name: Emerson
citation:
  ama: Salces-Castellano A, Stankowski S, Arribas P, et al. Long-term cloud forest
    response to climate warming revealed by insect speciation history. <i>Evolution</i>.
    2021;75(2):231-244. doi:<a href="https://doi.org/10.1111/evo.14111">10.1111/evo.14111</a>
  apa: Salces-Castellano, A., Stankowski, S., Arribas, P., Patino, J., Karger, D.
    N., Butlin, R., &#38; Emerson, B. C. (2021). Long-term cloud forest response to
    climate warming revealed by insect speciation history. <i>Evolution</i>. Wiley.
    <a href="https://doi.org/10.1111/evo.14111">https://doi.org/10.1111/evo.14111</a>
  chicago: Salces-Castellano, Antonia, Sean Stankowski, Paula Arribas, Jairo Patino,
    Dirk N.  Karger, Roger Butlin, and Brent C. Emerson. “Long-Term Cloud Forest Response
    to Climate Warming Revealed by Insect Speciation History.” <i>Evolution</i>. Wiley,
    2021. <a href="https://doi.org/10.1111/evo.14111">https://doi.org/10.1111/evo.14111</a>.
  ieee: A. Salces-Castellano <i>et al.</i>, “Long-term cloud forest response to climate
    warming revealed by insect speciation history,” <i>Evolution</i>, vol. 75, no.
    2. Wiley, pp. 231–244, 2021.
  ista: Salces-Castellano A, Stankowski S, Arribas P, Patino J, Karger DN, Butlin
    R, Emerson BC. 2021. Long-term cloud forest response to climate warming revealed
    by insect speciation history. Evolution. 75(2), 231–244.
  mla: Salces-Castellano, Antonia, et al. “Long-Term Cloud Forest Response to Climate
    Warming Revealed by Insect Speciation History.” <i>Evolution</i>, vol. 75, no.
    2, Wiley, 2021, pp. 231–44, doi:<a href="https://doi.org/10.1111/evo.14111">10.1111/evo.14111</a>.
  short: A. Salces-Castellano, S. Stankowski, P. Arribas, J. Patino, D.N. Karger,
    R. Butlin, B.C. Emerson, Evolution 75 (2021) 231–244.
date_created: 2020-11-08T23:01:26Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2023-08-04T11:09:49Z
day: '01'
department:
- _id: NiBa
doi: 10.1111/evo.14111
external_id:
  isi:
  - '000583190600001'
  pmid:
  - '33078844'
intvolume: '        75'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://hdl.handle.net/10261/223937
month: '02'
oa: 1
oa_version: Submitted Version
page: 231-244
pmid: 1
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1111/evo.14225
scopus_import: '1'
status: public
title: Long-term cloud forest response to climate warming revealed by insect speciation
  history
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 75
year: '2021'
...
---
_id: '9252'
abstract:
- lang: eng
  text: 'This paper analyses the conditions for local adaptation in a metapopulation
    with infinitely many islands under a model of hard selection, where population
    size depends on local fitness. Each island belongs to one of two distinct ecological
    niches or habitats. Fitness is influenced by an additive trait which is under
    habitat‐dependent directional selection. Our analysis is based on the diffusion
    approximation and accounts for both genetic drift and demographic stochasticity.
    By neglecting linkage disequilibria, it yields the joint distribution of allele
    frequencies and population size on each island. We find that under hard selection,
    the conditions for local adaptation in a rare habitat are more restrictive for
    more polygenic traits: even moderate migration load per locus at very many loci
    is sufficient for population sizes to decline. This further reduces the efficacy
    of selection at individual loci due to increased drift and because smaller populations
    are more prone to swamping due to migration, causing a positive feedback between
    increasing maladaptation and declining population sizes. Our analysis also highlights
    the importance of demographic stochasticity, which exacerbates the decline in
    numbers of maladapted populations, leading to population collapse in the rare
    habitat at significantly lower migration than predicted by deterministic arguments.'
acknowledgement: We thank the reviewers for their helpful comments, and also our colleagues,
  for illuminating discussions over the long gestation of this paper.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Eniko
  full_name: Szep, Eniko
  id: 485BB5A4-F248-11E8-B48F-1D18A9856A87
  last_name: Szep
- first_name: Himani
  full_name: Sachdeva, Himani
  id: 42377A0A-F248-11E8-B48F-1D18A9856A87
  last_name: Sachdeva
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Szep E, Sachdeva H, Barton NH. Polygenic local adaptation in metapopulations:
    A stochastic eco‐evolutionary model. <i>Evolution</i>. 2021;75(5):1030-1045. doi:<a
    href="https://doi.org/10.1111/evo.14210">10.1111/evo.14210</a>'
  apa: 'Szep, E., Sachdeva, H., &#38; Barton, N. H. (2021). Polygenic local adaptation
    in metapopulations: A stochastic eco‐evolutionary model. <i>Evolution</i>. Wiley.
    <a href="https://doi.org/10.1111/evo.14210">https://doi.org/10.1111/evo.14210</a>'
  chicago: 'Szep, Eniko, Himani Sachdeva, and Nicholas H Barton. “Polygenic Local
    Adaptation in Metapopulations: A Stochastic Eco‐evolutionary Model.” <i>Evolution</i>.
    Wiley, 2021. <a href="https://doi.org/10.1111/evo.14210">https://doi.org/10.1111/evo.14210</a>.'
  ieee: 'E. Szep, H. Sachdeva, and N. H. Barton, “Polygenic local adaptation in metapopulations:
    A stochastic eco‐evolutionary model,” <i>Evolution</i>, vol. 75, no. 5. Wiley,
    pp. 1030–1045, 2021.'
  ista: 'Szep E, Sachdeva H, Barton NH. 2021. Polygenic local adaptation in metapopulations:
    A stochastic eco‐evolutionary model. Evolution. 75(5), 1030–1045.'
  mla: 'Szep, Eniko, et al. “Polygenic Local Adaptation in Metapopulations: A Stochastic
    Eco‐evolutionary Model.” <i>Evolution</i>, vol. 75, no. 5, Wiley, 2021, pp. 1030–45,
    doi:<a href="https://doi.org/10.1111/evo.14210">10.1111/evo.14210</a>.'
  short: E. Szep, H. Sachdeva, N.H. Barton, Evolution 75 (2021) 1030–1045.
corr_author: '1'
date_created: 2021-03-20T08:22:10Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2025-06-12T06:35:39Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/evo.14210
external_id:
  isi:
  - '000636966300001'
  pmid:
  - '33742441'
file:
- access_level: open_access
  checksum: b90fb5767d623602046fed03725e16ca
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-08-11T13:39:19Z
  date_updated: 2021-08-11T13:39:19Z
  file_id: '9886'
  file_name: 2021_Evolution_Szep.pdf
  file_size: 734102
  relation: main_file
  success: 1
file_date_updated: 2021-08-11T13:39:19Z
has_accepted_license: '1'
intvolume: '        75'
isi: 1
issue: '5'
keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
- General Agricultural and Biological Sciences
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1030-1045
pmid: 1
publication: Evolution
publication_identifier:
  eissn:
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  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '13062'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: 'Polygenic local adaptation in metapopulations: A stochastic eco‐evolutionary
  model'
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 75
year: '2021'
...
---
_id: '9374'
abstract:
- lang: eng
  text: If there are no constraints on the process of speciation, then the number
    of species might be expected to match the number of available niches and this
    number might be indefinitely large. One possible constraint is the opportunity
    for allopatric divergence. In 1981, Felsenstein used a simple and elegant model
    to ask if there might also be genetic constraints. He showed that progress towards
    speciation could be described by the build‐up of linkage disequilibrium among
    divergently selected loci and between these loci and those contributing to other
    forms of reproductive isolation. Therefore, speciation is opposed by recombination,
    because it tends to break down linkage disequilibria. Felsenstein then introduced
    a crucial distinction between “two‐allele” models, which are subject to this effect,
    and “one‐allele” models, which are free from the recombination constraint. These
    fundamentally important insights have been the foundation for both empirical and
    theoretical studies of speciation ever since.
acknowledgement: RKB was funded by the Natural Environment Research Council (NE/P012272/1
  & NE/P001610/1), the European Research Council (693030 BARRIERS), and the Swedish
  Research Council (VR) (2018‐03695). MRS was funded by the National Science Foundation
  (Grant No. DEB1939290).
article_processing_charge: No
article_type: original
author:
- first_name: Roger K.
  full_name: Butlin, Roger K.
  last_name: Butlin
- first_name: Maria R.
  full_name: Servedio, Maria R.
  last_name: Servedio
- first_name: Carole M.
  full_name: Smadja, Carole M.
  last_name: Smadja
- first_name: Claudia
  full_name: Bank, Claudia
  last_name: Bank
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Samuel M.
  full_name: Flaxman, Samuel M.
  last_name: Flaxman
- first_name: Tatiana
  full_name: Giraud, Tatiana
  last_name: Giraud
- first_name: Robin
  full_name: Hopkins, Robin
  last_name: Hopkins
- first_name: Erica L.
  full_name: Larson, Erica L.
  last_name: Larson
- first_name: Martine E.
  full_name: Maan, Martine E.
  last_name: Maan
- first_name: Joana
  full_name: Meier, Joana
  last_name: Meier
- first_name: Richard
  full_name: Merrill, Richard
  last_name: Merrill
- first_name: Mohamed A. F.
  full_name: Noor, Mohamed A. F.
  last_name: Noor
- first_name: Daniel
  full_name: Ortiz‐Barrientos, Daniel
  last_name: Ortiz‐Barrientos
- first_name: Anna
  full_name: Qvarnström, Anna
  last_name: Qvarnström
citation:
  ama: Butlin RK, Servedio MR, Smadja CM, et al. Homage to Felsenstein 1981, or why
    are there so few/many species? <i>Evolution</i>. 2021;75(5):978-988. doi:<a href="https://doi.org/10.1111/evo.14235">10.1111/evo.14235</a>
  apa: Butlin, R. K., Servedio, M. R., Smadja, C. M., Bank, C., Barton, N. H., Flaxman,
    S. M., … Qvarnström, A. (2021). Homage to Felsenstein 1981, or why are there so
    few/many species? <i>Evolution</i>. Wiley. <a href="https://doi.org/10.1111/evo.14235">https://doi.org/10.1111/evo.14235</a>
  chicago: Butlin, Roger K., Maria R. Servedio, Carole M. Smadja, Claudia Bank, Nicholas
    H Barton, Samuel M. Flaxman, Tatiana Giraud, et al. “Homage to Felsenstein 1981,
    or Why Are There so Few/Many Species?” <i>Evolution</i>. Wiley, 2021. <a href="https://doi.org/10.1111/evo.14235">https://doi.org/10.1111/evo.14235</a>.
  ieee: R. K. Butlin <i>et al.</i>, “Homage to Felsenstein 1981, or why are there
    so few/many species?,” <i>Evolution</i>, vol. 75, no. 5. Wiley, pp. 978–988, 2021.
  ista: Butlin RK, Servedio MR, Smadja CM, Bank C, Barton NH, Flaxman SM, Giraud T,
    Hopkins R, Larson EL, Maan ME, Meier J, Merrill R, Noor MAF, Ortiz‐Barrientos
    D, Qvarnström A. 2021. Homage to Felsenstein 1981, or why are there so few/many
    species? Evolution. 75(5), 978–988.
  mla: Butlin, Roger K., et al. “Homage to Felsenstein 1981, or Why Are There so Few/Many
    Species?” <i>Evolution</i>, vol. 75, no. 5, Wiley, 2021, pp. 978–88, doi:<a href="https://doi.org/10.1111/evo.14235">10.1111/evo.14235</a>.
  short: R.K. Butlin, M.R. Servedio, C.M. Smadja, C. Bank, N.H. Barton, S.M. Flaxman,
    T. Giraud, R. Hopkins, E.L. Larson, M.E. Maan, J. Meier, R. Merrill, M.A.F. Noor,
    D. Ortiz‐Barrientos, A. Qvarnström, Evolution 75 (2021) 978–988.
date_created: 2021-05-06T04:34:47Z
date_published: 2021-04-19T00:00:00Z
date_updated: 2026-06-18T19:48:42Z
day: '19'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/evo.14235
external_id:
  isi:
  - '000647224000001'
intvolume: '        75'
isi: 1
issue: '5'
keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
- General Agricultural and Biological Sciences
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://onlinelibrary.wiley.com/doi/10.1111/evo.14235
month: '04'
oa: 1
oa_version: Published Version
page: 978-988
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Homage to Felsenstein 1981, or why are there so few/many species?
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 75
year: '2021'
...
---
_id: '9383'
abstract:
- lang: eng
  text: A primary roadblock to our understanding of speciation is that it usually
    occurs over a timeframe that is too long to study from start to finish. The idea
    of a speciation continuum provides something of a solution to this problem; rather
    than observing the entire process, we can simply reconstruct it from the multitude
    of speciation events that surround us. But what do we really mean when we talk
    about the speciation continuum, and can it really help us understand speciation?
    We explored these questions using a literature review and online survey of speciation
    researchers. Although most researchers were familiar with the concept and thought
    it was useful, our survey revealed extensive disagreement about what the speciation
    continuum actually tells us. This is due partly to the lack of a clear definition.
    Here, we provide an explicit definition that is compatible with the Biological
    Species Concept. That is, the speciation continuum is a continuum of reproductive
    isolation. After outlining the logic of the definition in light of alternatives,
    we explain why attempts to reconstruct the speciation process from present‐day
    populations will ultimately fail. We then outline how we think the speciation
    continuum concept can continue to act as a foundation for understanding the continuum
    of reproductive isolation that surrounds us.
acknowledgement: We thank M. Garlovsky, S. Martin, C. Cooney, C. Roux, J. Larson,
  and J. Mallet for critical feedback and for discussion. K. Lohse, M. de la Cámara,
  J. Cerca, M. A. Chase, C. Baskett, A. M. Westram, and N. H. Barton gave feedback
  on a draft of the manuscript. O. Seehausen, two anonymous reviewers, and the AE
  (Michael Kopp) provided comments that greatly improved the manuscript. V. Holzmann
  made many corrections to the proofs. G. Bisschop and K. Lohse kindly contributed
  the simulations and analyses presented in Box 3. We would also like to extend our
  thanks to everyone who took part in the speciation survey, which received ethical
  approval through the University of Sheffield Ethics Review Procedure (Application
  029768). We are especially grateful to R. K. Butlin for stimulating discussion throughout
  the writing of the manuscript and for feedback on an earlier draft.
article_processing_charge: No
article_type: original
author:
- first_name: Sean
  full_name: Stankowski, Sean
  id: 43161670-5719-11EA-8025-FABC3DDC885E
  last_name: Stankowski
- first_name: Mark
  full_name: Ravinet, Mark
  last_name: Ravinet
citation:
  ama: Stankowski S, Ravinet M. Defining the speciation continuum. <i>Evolution</i>.
    2021;75(6):1256-1273. doi:<a href="https://doi.org/10.1111/evo.14215">10.1111/evo.14215</a>
  apa: Stankowski, S., &#38; Ravinet, M. (2021). Defining the speciation continuum.
    <i>Evolution</i>. Oxford University Press. <a href="https://doi.org/10.1111/evo.14215">https://doi.org/10.1111/evo.14215</a>
  chicago: Stankowski, Sean, and Mark Ravinet. “Defining the Speciation Continuum.”
    <i>Evolution</i>. Oxford University Press, 2021. <a href="https://doi.org/10.1111/evo.14215">https://doi.org/10.1111/evo.14215</a>.
  ieee: S. Stankowski and M. Ravinet, “Defining the speciation continuum,” <i>Evolution</i>,
    vol. 75, no. 6. Oxford University Press, pp. 1256–1273, 2021.
  ista: Stankowski S, Ravinet M. 2021. Defining the speciation continuum. Evolution.
    75(6), 1256–1273.
  mla: Stankowski, Sean, and Mark Ravinet. “Defining the Speciation Continuum.” <i>Evolution</i>,
    vol. 75, no. 6, Oxford University Press, 2021, pp. 1256–73, doi:<a href="https://doi.org/10.1111/evo.14215">10.1111/evo.14215</a>.
  short: S. Stankowski, M. Ravinet, Evolution 75 (2021) 1256–1273.
date_created: 2021-05-09T22:01:39Z
date_published: 2021-03-22T00:00:00Z
date_updated: 2023-10-18T08:16:01Z
day: '22'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/evo.14215
external_id:
  isi:
  - '000647226400001'
file:
- access_level: open_access
  checksum: 96f6ccf15d95a4e9f7c0b27eee570fa6
  content_type: application/pdf
  creator: kschuh
  date_created: 2022-03-25T12:02:04Z
  date_updated: 2022-03-25T12:02:04Z
  file_id: '10921'
  file_name: 2021_Evolution_Stankowski.pdf
  file_size: 719991
  relation: main_file
  success: 1
file_date_updated: 2022-03-25T12:02:04Z
has_accepted_license: '1'
intvolume: '        75'
isi: 1
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1256-1273
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Defining the speciation continuum
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 75
year: '2021'
...
---
_id: '7995'
abstract:
- lang: eng
  text: When divergent populations are connected by gene flow, the establishment of
    complete reproductive isolation usually requires the joint action of multiple
    barrier effects. One example where multiple barrier effects are coupled consists
    of a single trait that is under divergent natural selection and also mediates
    assortative mating. Such multiple‐effect traits can strongly reduce gene flow.
    However, there are few cases where patterns of assortative mating have been described
    quantitatively and their impact on gene flow has been determined. Two ecotypes
    of the coastal marine snail, Littorina saxatilis , occur in North Atlantic rocky‐shore
    habitats dominated by either crab predation or wave action. There is evidence
    for divergent natural selection acting on size, and size‐assortative mating has
    previously been documented. Here, we analyze the mating pattern in L. saxatilis
    with respect to size in intensively sampled transects across boundaries between
    the habitats. We show that the mating pattern is mostly conserved between ecotypes
    and that it generates both assortment and directional sexual selection for small
    male size. Using simulations, we show that the mating pattern can contribute to
    reproductive isolation between ecotypes but the barrier to gene flow is likely
    strengthened more by sexual selection than by assortment.
acknowledgement: We are very grateful to I. Sencic, L. Brettell, A.‐L. Liabot, J.
  Galindo, M. Ravinet, and A. Butlin for their help with field sampling and mating
  experiments. This work was funded by the Natural Environment Research Council, European
  Research Council and Swedish Research Council VR and we are also very grateful for
  the support of the Linnaeus Centre for Marine Evolutionary Biology at the University
  of Gothenburg. The simulations were performed on resources at Chalmers Centre for
  Computational Science and Engineering (C3SE) provided by the Swedish National Infrastructure
  for Computing (SNIC). AMW was funded by the European Union's Horizon 2020 research
  and innovation program under Marie Skłodowska‐Curie grant agreement no. 797747.
article_processing_charge: No
article_type: original
author:
- first_name: Samuel
  full_name: Perini, Samuel
  last_name: Perini
- first_name: Marina
  full_name: Rafajlović, Marina
  last_name: Rafajlović
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Kerstin
  full_name: Johannesson, Kerstin
  last_name: Johannesson
- first_name: Roger K.
  full_name: Butlin, Roger K.
  last_name: Butlin
citation:
  ama: Perini S, Rafajlović M, Westram AM, Johannesson K, Butlin RK. Assortative mating,
    sexual selection, and their consequences for gene flow in Littorina. <i>Evolution</i>.
    2020;74(7):1482-1497. doi:<a href="https://doi.org/10.1111/evo.14027">10.1111/evo.14027</a>
  apa: Perini, S., Rafajlović, M., Westram, A. M., Johannesson, K., &#38; Butlin,
    R. K. (2020). Assortative mating, sexual selection, and their consequences for
    gene flow in Littorina. <i>Evolution</i>. Wiley. <a href="https://doi.org/10.1111/evo.14027">https://doi.org/10.1111/evo.14027</a>
  chicago: Perini, Samuel, Marina Rafajlović, Anja M Westram, Kerstin Johannesson,
    and Roger K. Butlin. “Assortative Mating, Sexual Selection, and Their Consequences
    for Gene Flow in Littorina.” <i>Evolution</i>. Wiley, 2020. <a href="https://doi.org/10.1111/evo.14027">https://doi.org/10.1111/evo.14027</a>.
  ieee: S. Perini, M. Rafajlović, A. M. Westram, K. Johannesson, and R. K. Butlin,
    “Assortative mating, sexual selection, and their consequences for gene flow in
    Littorina,” <i>Evolution</i>, vol. 74, no. 7. Wiley, pp. 1482–1497, 2020.
  ista: Perini S, Rafajlović M, Westram AM, Johannesson K, Butlin RK. 2020. Assortative
    mating, sexual selection, and their consequences for gene flow in Littorina. Evolution.
    74(7), 1482–1497.
  mla: Perini, Samuel, et al. “Assortative Mating, Sexual Selection, and Their Consequences
    for Gene Flow in Littorina.” <i>Evolution</i>, vol. 74, no. 7, Wiley, 2020, pp.
    1482–97, doi:<a href="https://doi.org/10.1111/evo.14027">10.1111/evo.14027</a>.
  short: S. Perini, M. Rafajlović, A.M. Westram, K. Johannesson, R.K. Butlin, Evolution
    74 (2020) 1482–1497.
date_created: 2020-06-22T09:14:21Z
date_published: 2020-07-01T00:00:00Z
date_updated: 2025-07-10T11:54:58Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/evo.14027
ec_funded: 1
external_id:
  isi:
  - '000539780800001'
file:
- access_level: open_access
  checksum: 56235bf1e2a9e25f96196bb13b6b754d
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-25T10:49:48Z
  date_updated: 2020-11-25T10:49:48Z
  file_id: '8808'
  file_name: 2020_Evolution_Perini.pdf
  file_size: 1080810
  relation: main_file
  success: 1
file_date_updated: 2020-11-25T10:49:48Z
has_accepted_license: '1'
intvolume: '        74'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 1482-1497
project:
- _id: 265B41B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '797747'
  name: Theoretical and empirical approaches to understanding Parallel Adaptation
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '8809'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Assortative mating, sexual selection, and their consequences for gene flow
  in Littorina
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 74
year: '2020'
...
---
_id: '6680'
abstract:
- lang: eng
  text: This paper analyzes how partial selfing in a large source population influences
    its ability to colonize a new habitat via the introduction of a few founder individuals.
    Founders experience inbreeding depression due to partially recessive deleterious
    alleles as well as maladaptation to the new environment due to selection on a
    large number of additive loci. I first introduce a simplified version of the Inbreeding
    History Model (Kelly, 2007) in order to characterize mutation‐selection balance
    in a large, partially selfing source population under selection involving multiple
    non‐identical loci. I then use individual‐based simulations to study the eco‐evolutionary
    dynamics of founders establishing in the new habitat under a model of hard selection.
    The study explores how selfing rate shapes establishment probabilities of founders
    via effects on both inbreeding depression and adaptability to the new environment,
    and also distinguishes the effects of selfing on the initial fitness of founders
    from its effects on the long‐term adaptive response of the populations they found.
    A high rate of (but not complete) selfing is found to aid establishment over a
    wide range of parameters, even in the absence of mate limitation. The sensitivity
    of the results to assumptions about the nature of polygenic selection are discussed.
article_processing_charge: Yes (via OA deal)
author:
- first_name: Himani
  full_name: Sachdeva, Himani
  id: 42377A0A-F248-11E8-B48F-1D18A9856A87
  last_name: Sachdeva
citation:
  ama: Sachdeva H. Effect of partial selfing and polygenic selection on establishment
    in a new habitat. <i>Evolution</i>. 2019;73(9):1729-1745. doi:<a href="https://doi.org/10.1111/evo.13812">10.1111/evo.13812</a>
  apa: Sachdeva, H. (2019). Effect of partial selfing and polygenic selection on establishment
    in a new habitat. <i>Evolution</i>. Wiley. <a href="https://doi.org/10.1111/evo.13812">https://doi.org/10.1111/evo.13812</a>
  chicago: Sachdeva, Himani. “Effect of Partial Selfing and Polygenic Selection on
    Establishment in a New Habitat.” <i>Evolution</i>. Wiley, 2019. <a href="https://doi.org/10.1111/evo.13812">https://doi.org/10.1111/evo.13812</a>.
  ieee: H. Sachdeva, “Effect of partial selfing and polygenic selection on establishment
    in a new habitat,” <i>Evolution</i>, vol. 73, no. 9. Wiley, pp. 1729–1745, 2019.
  ista: Sachdeva H. 2019. Effect of partial selfing and polygenic selection on establishment
    in a new habitat. Evolution. 73(9), 1729–1745.
  mla: Sachdeva, Himani. “Effect of Partial Selfing and Polygenic Selection on Establishment
    in a New Habitat.” <i>Evolution</i>, vol. 73, no. 9, Wiley, 2019, pp. 1729–45,
    doi:<a href="https://doi.org/10.1111/evo.13812">10.1111/evo.13812</a>.
  short: H. Sachdeva, Evolution 73 (2019) 1729–1745.
corr_author: '1'
date_created: 2019-07-25T09:08:28Z
date_published: 2019-09-01T00:00:00Z
date_updated: 2024-10-09T20:58:56Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.1111/evo.13812
external_id:
  isi:
  - '000481300600001'
file:
- access_level: open_access
  checksum: 772ce7035965153959b946a1033de1ca
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-09-17T10:56:27Z
  date_updated: 2020-07-14T12:47:37Z
  file_id: '6881'
  file_name: 2019_Evolution_Sachdeva.pdf
  file_size: 937573
  relation: main_file
file_date_updated: 2020-07-14T12:47:37Z
has_accepted_license: '1'
intvolume: '        73'
isi: 1
issue: '9'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1729-1745
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '9802'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Effect of partial selfing and polygenic selection on establishment in a new
  habitat
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 73
year: '2019'
...
---
_id: '1851'
abstract:
- lang: eng
  text: We consider mating strategies for females who search for males sequentially
    during a season of limited length. We show that the best strategy rejects a given
    male type if encountered before a time-threshold but accepts him after. For frequency-independent
    benefits, we obtain the optimal time-thresholds explicitly for both discrete and
    continuous distributions of males, and allow for mistakes being made in assessing
    the correct male type. When the benefits are indirect (genes for the offspring)
    and the population is under frequency-dependent ecological selection, the benefits
    depend on the mating strategy of other females as well. This case is particularly
    relevant to speciation models that seek to explore the stability of reproductive
    isolation by assortative mating under frequency-dependent ecological selection.
    We show that the indirect benefits are to be quantified by the reproductive values
    of couples, and describe how the evolutionarily stable time-thresholds can be
    found. We conclude with an example based on the Levene model, in which we analyze
    the evolutionarily stable assortative mating strategies and the strength of reproductive
    isolation provided by them.
article_processing_charge: No
article_type: original
author:
- first_name: Tadeas
  full_name: Priklopil, Tadeas
  id: 3C869AA0-F248-11E8-B48F-1D18A9856A87
  last_name: Priklopil
- first_name: Eva
  full_name: Kisdi, Eva
  last_name: Kisdi
- first_name: Mats
  full_name: Gyllenberg, Mats
  last_name: Gyllenberg
citation:
  ama: Priklopil T, Kisdi E, Gyllenberg M. Evolutionarily stable mating decisions
    for sequentially searching females and the stability of reproductive isolation
    by assortative mating. <i>Evolution</i>. 2015;69(4):1015-1026. doi:<a href="https://doi.org/10.1111/evo.12618">10.1111/evo.12618</a>
  apa: Priklopil, T., Kisdi, E., &#38; Gyllenberg, M. (2015). Evolutionarily stable
    mating decisions for sequentially searching females and the stability of reproductive
    isolation by assortative mating. <i>Evolution</i>. Wiley. <a href="https://doi.org/10.1111/evo.12618">https://doi.org/10.1111/evo.12618</a>
  chicago: Priklopil, Tadeas, Eva Kisdi, and Mats Gyllenberg. “Evolutionarily Stable
    Mating Decisions for Sequentially Searching Females and the Stability of Reproductive
    Isolation by Assortative Mating.” <i>Evolution</i>. Wiley, 2015. <a href="https://doi.org/10.1111/evo.12618">https://doi.org/10.1111/evo.12618</a>.
  ieee: T. Priklopil, E. Kisdi, and M. Gyllenberg, “Evolutionarily stable mating decisions
    for sequentially searching females and the stability of reproductive isolation
    by assortative mating,” <i>Evolution</i>, vol. 69, no. 4. Wiley, pp. 1015–1026,
    2015.
  ista: Priklopil T, Kisdi E, Gyllenberg M. 2015. Evolutionarily stable mating decisions
    for sequentially searching females and the stability of reproductive isolation
    by assortative mating. Evolution. 69(4), 1015–1026.
  mla: Priklopil, Tadeas, et al. “Evolutionarily Stable Mating Decisions for Sequentially
    Searching Females and the Stability of Reproductive Isolation by Assortative Mating.”
    <i>Evolution</i>, vol. 69, no. 4, Wiley, 2015, pp. 1015–26, doi:<a href="https://doi.org/10.1111/evo.12618">10.1111/evo.12618</a>.
  short: T. Priklopil, E. Kisdi, M. Gyllenberg, Evolution 69 (2015) 1015–1026.
corr_author: '1'
date_created: 2018-12-11T11:54:21Z
date_published: 2015-02-09T00:00:00Z
date_updated: 2025-09-22T14:27:30Z
day: '09'
ddc:
- '570'
department:
- _id: NiBa
- _id: KrCh
doi: 10.1111/evo.12618
ec_funded: 1
external_id:
  isi:
  - '000353236000014'
  pmid:
  - '25662095'
file:
- access_level: open_access
  checksum: 1e8be0b1d7598a78cd2623d8ee8e7798
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-15T09:05:34Z
  date_updated: 2020-07-14T12:45:19Z
  file_id: '7855'
  file_name: 2015_Evolution_Priklopil.pdf
  file_size: 967214
  relation: main_file
file_date_updated: 2020-07-14T12:45:19Z
has_accepted_license: '1'
intvolume: '        69'
isi: 1
issue: '4'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Submitted Version
page: 1015 - 1026
pmid: 1
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
publist_id: '5249'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evolutionarily stable mating decisions for sequentially searching females and
  the stability of reproductive isolation by assortative mating
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 69
year: '2015'
...
---
_id: '9931'
abstract:
- lang: eng
  text: Gene duplication is important in evolution, because it provides new raw material
    for evolutionary adaptations. Several existing hypotheses about the causes of
    duplicate retention and diversification differ in their emphasis on gene dosage,
    subfunctionalization, and neofunctionalization. Little experimental data exist
    on the relative importance of gene expression changes and changes in coding regions
    for the evolution of duplicate genes. Furthermore, we do not know how strongly
    the environment could affect this importance. To address these questions, we performed
    evolution experiments with the TEM-1 beta lactamase gene in Escherichia coli to
    study the initial stages of duplicate gene evolution in the laboratory. We mimicked
    tandem duplication by inserting two copies of the TEM-1 gene on the same plasmid.
    We then subjected these copies to repeated cycles of mutagenesis and selection
    in various environments that contained antibiotics in different combinations and
    concentrations. Our experiments showed that gene dosage is the most important
    factor in the initial stages of duplicate gene evolution, and overshadows the
    importance of point mutations in the coding region.
acknowledgement: We thank the Functional Genomics Center Zurich for its service in
  generating sequencing data, M. Ackermann and E. Hayden for helpful discussions,
  A. de Visser for comments on earlier versions of this manuscript, and M. Moser for
  help with quantitative PCR. This work was supported by Swiss National Science Foundation
  (grant 315230–129708), as well as through the YeastX project of SystemsX.ch, and
  the University Priority Research Program in Systems Biology at the University of
  Zurich. RD acknowledges support from the Forschungskredit program of the University
  of Zurich. The authors declare no conflict of interest.
article_processing_charge: No
article_type: original
author:
- first_name: Riddhiman
  full_name: Dhar, Riddhiman
  last_name: Dhar
- first_name: Tobias
  full_name: Bergmiller, Tobias
  id: 2C471CFA-F248-11E8-B48F-1D18A9856A87
  last_name: Bergmiller
  orcid: 0000-0001-5396-4346
- first_name: Andreas
  full_name: Wagner, Andreas
  last_name: Wagner
citation:
  ama: Dhar R, Bergmiller T, Wagner A. Increased gene dosage plays a predominant role
    in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. <i>Evolution</i>.
    2014;68(6):1775-1791. doi:<a href="https://doi.org/10.1111/evo.12373">10.1111/evo.12373</a>
  apa: Dhar, R., Bergmiller, T., &#38; Wagner, A. (2014). Increased gene dosage plays
    a predominant role in the initial stages of evolution of duplicate TEM-1 beta
    lactamase genes. <i>Evolution</i>. Wiley. <a href="https://doi.org/10.1111/evo.12373">https://doi.org/10.1111/evo.12373</a>
  chicago: Dhar, Riddhiman, Tobias Bergmiller, and Andreas Wagner. “Increased Gene
    Dosage Plays a Predominant Role in the Initial Stages of Evolution of Duplicate
    TEM-1 Beta Lactamase Genes.” <i>Evolution</i>. Wiley, 2014. <a href="https://doi.org/10.1111/evo.12373">https://doi.org/10.1111/evo.12373</a>.
  ieee: R. Dhar, T. Bergmiller, and A. Wagner, “Increased gene dosage plays a predominant
    role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes,”
    <i>Evolution</i>, vol. 68, no. 6. Wiley, pp. 1775–1791, 2014.
  ista: Dhar R, Bergmiller T, Wagner A. 2014. Increased gene dosage plays a predominant
    role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes.
    Evolution. 68(6), 1775–1791.
  mla: Dhar, Riddhiman, et al. “Increased Gene Dosage Plays a Predominant Role in
    the Initial Stages of Evolution of Duplicate TEM-1 Beta Lactamase Genes.” <i>Evolution</i>,
    vol. 68, no. 6, Wiley, 2014, pp. 1775–91, doi:<a href="https://doi.org/10.1111/evo.12373">10.1111/evo.12373</a>.
  short: R. Dhar, T. Bergmiller, A. Wagner, Evolution 68 (2014) 1775–1791.
date_created: 2021-08-17T09:03:09Z
date_published: 2014-06-03T00:00:00Z
date_updated: 2025-09-29T13:20:48Z
day: '03'
department:
- _id: CaGu
doi: 10.1111/evo.12373
external_id:
  isi:
  - '000337558900019'
  pmid:
  - '24495000'
intvolume: '        68'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: 1775-1791
pmid: 1
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '9932'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Increased gene dosage plays a predominant role in the initial stages of evolution
  of duplicate TEM-1 beta lactamase genes
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 68
year: '2014'
...
---
OA_type: closed access
_id: '4245'
abstract:
- lang: eng
  text: Sex allocation theory has proved extremely successful at predicting when individuals
    should adjust the sex of their offspring in response to environmental conditions.
    However, we know rather little about the underlying genetics of sex ratio or how
    genetic architecture might constrain adaptive sex-ratio behavior. We examined
    how mutation influenced genetic variation in the sex ratios produced by the parasitoid
    wasp Nasonia vitripennis. In a mutation accumulation experiment, we determined
    the mutability of sex ratio, and compared this with the amount of genetic variation
    observed in natural populations. We found that the mutability (h2m) ranges from
    0.001 to 0.002, similar to estimates for life-history traits in other organisms.
    These estimates suggest one mutation every 5–60 generations, which shift the sex
    ratio by approximately 0.01 (proportion males). In this and other studies, the
    genetic variation in N. vitripennis sex ratio ranged from 0.02 to 0.17 (broad-sense
    heritability, H2). If sex ratio is maintained by mutation–selection balance, a
    higher genetic variance would be expected given our mutational parameters. Instead,
    the observed genetic variance perhaps suggests additional selection against sex-ratio
    mutations with deleterious effects on other fitness traits as well as sex ratio
    (i.e., pleiotropy), as has been argued to be the case more generally.
article_processing_charge: No
article_type: original
author:
- first_name: Bart
  full_name: Pannebakker, Bart
  last_name: Pannebakker
- first_name: Daniel
  full_name: Halligan, Daniel
  last_name: Halligan
- first_name: K Tracy
  full_name: Reynolds, K Tracy
  last_name: Reynolds
- first_name: Gavin
  full_name: Ballantyne, Gavin
  last_name: Ballantyne
- first_name: David
  full_name: Shuker, David
  last_name: Shuker
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Stuart
  full_name: West, Stuart
  last_name: West
citation:
  ama: Pannebakker B, Halligan D, Reynolds KT, et al. Effects of spontaneous mutation
    accumulation on sex ratio traits. <i>Evolution; International Journal of Organic
    Evolution</i>. 2008;62(8):1921-1935. doi:<a href="https://doi.org/10.1111/j.1558-5646.2008.00434.x">10.1111/j.1558-5646.2008.00434.x</a>
  apa: Pannebakker, B., Halligan, D., Reynolds, K. T., Ballantyne, G., Shuker, D.,
    Barton, N. H., &#38; West, S. (2008). Effects of spontaneous mutation accumulation
    on sex ratio traits. <i>Evolution; International Journal of Organic Evolution</i>.
    Oxford Academic. <a href="https://doi.org/10.1111/j.1558-5646.2008.00434.x">https://doi.org/10.1111/j.1558-5646.2008.00434.x</a>
  chicago: Pannebakker, Bart, Daniel Halligan, K Tracy Reynolds, Gavin Ballantyne,
    David Shuker, Nicholas H Barton, and Stuart West. “Effects of Spontaneous Mutation
    Accumulation on Sex Ratio Traits.” <i>Evolution; International Journal of Organic
    Evolution</i>. Oxford Academic, 2008. <a href="https://doi.org/10.1111/j.1558-5646.2008.00434.x">https://doi.org/10.1111/j.1558-5646.2008.00434.x</a>.
  ieee: B. Pannebakker <i>et al.</i>, “Effects of spontaneous mutation accumulation
    on sex ratio traits,” <i>Evolution; International Journal of Organic Evolution</i>,
    vol. 62, no. 8. Oxford Academic, pp. 1921–1935, 2008.
  ista: Pannebakker B, Halligan D, Reynolds KT, Ballantyne G, Shuker D, Barton NH,
    West S. 2008. Effects of spontaneous mutation accumulation on sex ratio traits.
    Evolution; International Journal of Organic Evolution. 62(8), 1921–1935.
  mla: Pannebakker, Bart, et al. “Effects of Spontaneous Mutation Accumulation on
    Sex Ratio Traits.” <i>Evolution; International Journal of Organic Evolution</i>,
    vol. 62, no. 8, Oxford Academic, 2008, pp. 1921–35, doi:<a href="https://doi.org/10.1111/j.1558-5646.2008.00434.x">10.1111/j.1558-5646.2008.00434.x</a>.
  short: B. Pannebakker, D. Halligan, K.T. Reynolds, G. Ballantyne, D. Shuker, N.H.
    Barton, S. West, Evolution; International Journal of Organic Evolution 62 (2008)
    1921–1935.
date_created: 2018-12-11T12:07:49Z
date_published: 2008-08-01T00:00:00Z
date_updated: 2026-05-28T13:46:48Z
day: '01'
doi: 10.1111/j.1558-5646.2008.00434.x
extern: '1'
external_id:
  pmid:
  - '18522711'
intvolume: '        62'
issue: '8'
language:
- iso: eng
month: '08'
oa_version: None
page: 1921 - 1935
pmid: 1
publication: Evolution; International Journal of Organic Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Oxford Academic
publist_id: '1860'
status: public
title: Effects of spontaneous mutation accumulation on sex ratio traits
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 62
year: '2008'
...
---
OA_type: closed access
_id: '4249'
abstract:
- lang: eng
  text: We examined causes of speciation in asexual populations in both sympatry and
    parapatry, providing an alternative explanation for the speciation patterns reported
    by Dieckmann and Doebeli (1999) and Doebeli and Dieckmann (2003). Both in sympatry
    and parapatry, they find that speciation occurs relatively easily. We reveal that
    in the sympatric clonal model, the equilibrium distribution is continuous and
    the disruptive selection driving evolution of discrete clusters is only transient.
    Hence, if discrete phenotypes are to remain stable in the sympatric sexual model,
    there should be some source of nontransient disruptive selection that will drive
    evolution of assortment. We analyze sexually reproducing populations using the
    Bulmer’s infinitesimal model and show that cost-free assortment alone leads to
    speciation and disruptive selection only arises when the optimal distribution
    cannot be matched—in this example, because the phenotypic range is limited. In
    addition, Doebeli and Dieckmann’s analyses assumed a high genetic variance and
    a high mutation rate. Thus, these theoretical models do not support the conclusion
    that sympatric speciation is a likely outcome of competition for resources. In
    their parapatric model (Doebeli and Dieckmann 2003), clustering into distinct
    phenotypes is driven by edge effects, rather than by frequency-dependent competition.
article_processing_charge: No
article_type: original
author:
- first_name: Jitka
  full_name: Polechova, Jitka
  id: 3BBFB084-F248-11E8-B48F-1D18A9856A87
  last_name: Polechova
  orcid: 0000-0003-0951-3112
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Polechova J, Barton NH. Speciation through competition: A critical review.
    <i>Evolution; International Journal of Organic Evolution</i>. 2005;59(6):1194-1210.
    doi:<a href="https://doi.org/10.1111/j.0014-3820.2005.tb01771.x">10.1111/j.0014-3820.2005.tb01771.x</a>'
  apa: 'Polechova, J., &#38; Barton, N. H. (2005). Speciation through competition:
    A critical review. <i>Evolution; International Journal of Organic Evolution</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1111/j.0014-3820.2005.tb01771.x">https://doi.org/10.1111/j.0014-3820.2005.tb01771.x</a>'
  chicago: 'Polechova, Jitka, and Nicholas H Barton. “Speciation through Competition:
    A Critical Review.” <i>Evolution; International Journal of Organic Evolution</i>.
    Wiley-Blackwell, 2005. <a href="https://doi.org/10.1111/j.0014-3820.2005.tb01771.x">https://doi.org/10.1111/j.0014-3820.2005.tb01771.x</a>.'
  ieee: 'J. Polechova and N. H. Barton, “Speciation through competition: A critical
    review,” <i>Evolution; International Journal of Organic Evolution</i>, vol. 59,
    no. 6. Wiley-Blackwell, pp. 1194–1210, 2005.'
  ista: 'Polechova J, Barton NH. 2005. Speciation through competition: A critical
    review. Evolution; International Journal of Organic Evolution. 59(6), 1194–1210.'
  mla: 'Polechova, Jitka, and Nicholas H. Barton. “Speciation through Competition:
    A Critical Review.” <i>Evolution; International Journal of Organic Evolution</i>,
    vol. 59, no. 6, Wiley-Blackwell, 2005, pp. 1194–210, doi:<a href="https://doi.org/10.1111/j.0014-3820.2005.tb01771.x">10.1111/j.0014-3820.2005.tb01771.x</a>.'
  short: J. Polechova, N.H. Barton, Evolution; International Journal of Organic Evolution
    59 (2005) 1194–1210.
das_tickbox: '1'
date_created: 2018-12-11T12:07:50Z
date_published: 2005-06-01T00:00:00Z
date_updated: 2026-07-03T10:56:31Z
day: '01'
doi: 10.1111/j.0014-3820.2005.tb01771.x
extern: '1'
external_id:
  pmid:
  - '16050097'
intvolume: '        59'
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: 1194 - 1210
pmid: 1
publication: Evolution; International Journal of Organic Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley-Blackwell
publist_id: '1849'
status: public
title: 'Speciation through competition: A critical review'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 59
year: '2005'
...
