[{"publication_status":"published","article_processing_charge":"Yes","month":"07","department":[{"_id":"VlKo"}],"external_id":{"arxiv":["2007.10824"]},"conference":{"location":"Paderborn, Germany","start_date":"2023-07-10","name":"ICALP: Automata, Languages and Programming","end_date":"2023-07-14"},"article_number":"72","date_created":"2023-08-20T22:01:14Z","arxiv":1,"related_material":{"record":[{"status":"public","id":"18855","relation":"later_version"}]},"type":"conference","date_published":"2023-07-01T00:00:00Z","fulldoi":"https://doi.org/10.4230/LIPIcs.ICALP.2023.72","author":[{"first_name":"David G.","last_name":"Harris","full_name":"Harris, David G."},{"first_name":"Vladimir","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","full_name":"Kolmogorov, Vladimir","last_name":"Kolmogorov"}],"oa":1,"corr_author":"1","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","intvolume":"       261","_id":"14084","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","status":"public","title":"Parameter estimation for Gibbs distributions","date_updated":"2025-07-10T11:50:45Z","year":"2023","doi":"10.4230/LIPIcs.ICALP.2023.72","file_date_updated":"2023-08-21T06:45:16Z","file":[{"content_type":"application/pdf","date_created":"2023-08-21T06:45:16Z","file_name":"2023_LIPIcsICALP_Harris.pdf","checksum":"6dee0684245bb1c524b9c955db1e933d","creator":"dernst","file_size":917791,"file_id":"14088","relation":"main_file","date_updated":"2023-08-21T06:45:16Z","access_level":"open_access","success":1}],"publication_identifier":{"isbn":["9783959772785"],"issn":["1868-8969"]},"citation":{"apa":"Harris, D. G., &#38; Kolmogorov, V. (2023). Parameter estimation for Gibbs distributions. In <i>50th International Colloquium on Automata, Languages, and Programming</i> (Vol. 261). Paderborn, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.72\">https://doi.org/10.4230/LIPIcs.ICALP.2023.72</a>","short":"D.G. Harris, V. Kolmogorov, in:, 50th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","chicago":"Harris, David G., and Vladimir Kolmogorov. “Parameter Estimation for Gibbs Distributions.” In <i>50th International Colloquium on Automata, Languages, and Programming</i>, Vol. 261. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. <a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.72\">https://doi.org/10.4230/LIPIcs.ICALP.2023.72</a>.","ieee":"D. G. Harris and V. Kolmogorov, “Parameter estimation for Gibbs distributions,” in <i>50th International Colloquium on Automata, Languages, and Programming</i>, Paderborn, Germany, 2023, vol. 261.","ama":"Harris DG, Kolmogorov V. Parameter estimation for Gibbs distributions. In: <i>50th International Colloquium on Automata, Languages, and Programming</i>. Vol 261. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:<a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.72\">10.4230/LIPIcs.ICALP.2023.72</a>","ista":"Harris DG, Kolmogorov V. 2023. Parameter estimation for Gibbs distributions. 50th International Colloquium on Automata, Languages, and Programming. ICALP: Automata, Languages and Programming, LIPIcs, vol. 261, 72.","mla":"Harris, David G., and Vladimir Kolmogorov. “Parameter Estimation for Gibbs Distributions.” <i>50th International Colloquium on Automata, Languages, and Programming</i>, vol. 261, 72, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:<a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.72\">10.4230/LIPIcs.ICALP.2023.72</a>."},"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"acknowledgement":"We thank Heng Guo for helpful explanations of algorithms for sampling connected subgraphs and matchings, Maksym Serbyn for bringing to our attention the Wang-Landau algorithm and its use in physics.","language":[{"iso":"eng"}],"publication":"50th International Colloquium on Automata, Languages, and Programming","ddc":["000","510"],"license":"https://creativecommons.org/licenses/by/4.0/","scopus_import":"1","day":"01","abstract":[{"lang":"eng","text":"A central problem in computational statistics is to convert a procedure for sampling combinatorial objects into a procedure for counting those objects, and vice versa. We will consider sampling problems which come from Gibbs distributions, which are families of probability distributions over a discrete space Ω with probability mass function of the form μ^Ω_β(ω) ∝ e^{β H(ω)} for β in an interval [β_min, β_max] and H(ω) ∈ {0} ∪ [1, n].\r\nThe partition function is the normalization factor Z(β) = ∑_{ω ∈ Ω} e^{β H(ω)}, and the log partition ratio is defined as q = (log Z(β_max))/Z(β_min)\r\nWe develop a number of algorithms to estimate the counts c_x using roughly Õ(q/ε²) samples for general Gibbs distributions and Õ(n²/ε²) samples for integer-valued distributions (ignoring some second-order terms and parameters), We show this is optimal up to logarithmic factors. We illustrate with improved algorithms for counting connected subgraphs and perfect matchings in a graph."}],"volume":261,"alternative_title":["LIPIcs"]},{"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","intvolume":"       261","oa":1,"author":[{"last_name":"Goranci","full_name":"Goranci, Gramoz","first_name":"Gramoz"},{"last_name":"Henzinger","full_name":"Henzinger, Monika H","first_name":"Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530"}],"corr_author":"1","doi":"10.4230/LIPIcs.ICALP.2023.69","date_updated":"2025-06-04T07:19:37Z","title":"Efficient data structures for incremental exact and approximate maximum flow","year":"2023","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","status":"public","_id":"14085","date_created":"2023-08-20T22:01:14Z","article_number":"69","conference":{"end_date":"2023-07-14","name":"ICALP: Automata, Languages and Programming","start_date":"2023-07-10","location":"Paderborn, Germany"},"external_id":{"arxiv":["2211.09606"]},"department":[{"_id":"MoHe"}],"article_processing_charge":"Yes","month":"07","publication_status":"published","fulldoi":"https://doi.org/10.4230/LIPIcs.ICALP.2023.69","date_published":"2023-07-01T00:00:00Z","type":"conference","arxiv":1,"publication":"50th International Colloquium on Automata, Languages, and Programming","ddc":["000"],"ec_funded":1,"alternative_title":["LIPIcs"],"volume":261,"abstract":[{"text":"We show an (1+ϵ)-approximation algorithm for maintaining maximum s-t flow under m edge insertions in m1/2+o(1)ϵ−1/2 amortized update time for directed, unweighted graphs. This constitutes the first sublinear dynamic maximum flow algorithm in general sparse graphs with arbitrarily good approximation guarantee.","lang":"eng"}],"day":"01","scopus_import":"1","project":[{"_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","call_identifier":"H2020","grant_number":"101019564","name":"The design and evaluation of modern fully dynamic data structures"},{"grant_number":"I05982","name":"Static and Dynamic Hierarchical Graph Decompositions","_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103"},{"grant_number":"P33775","name":"Fast Algorithms for a Reactive Network Layer","_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe"}],"citation":{"chicago":"Goranci, Gramoz, and Monika Henzinger. “Efficient Data Structures for Incremental Exact and Approximate Maximum Flow.” In <i>50th International Colloquium on Automata, Languages, and Programming</i>, Vol. 261. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. <a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.69\">https://doi.org/10.4230/LIPIcs.ICALP.2023.69</a>.","ieee":"G. Goranci and M. Henzinger, “Efficient data structures for incremental exact and approximate maximum flow,” in <i>50th International Colloquium on Automata, Languages, and Programming</i>, Paderborn, Germany, 2023, vol. 261.","apa":"Goranci, G., &#38; Henzinger, M. (2023). Efficient data structures for incremental exact and approximate maximum flow. In <i>50th International Colloquium on Automata, Languages, and Programming</i> (Vol. 261). Paderborn, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.69\">https://doi.org/10.4230/LIPIcs.ICALP.2023.69</a>","short":"G. Goranci, M. Henzinger, in:, 50th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","ista":"Goranci G, Henzinger M. 2023. Efficient data structures for incremental exact and approximate maximum flow. 50th International Colloquium on Automata, Languages, and Programming. ICALP: Automata, Languages and Programming, LIPIcs, vol. 261, 69.","mla":"Goranci, Gramoz, and Monika Henzinger. “Efficient Data Structures for Incremental Exact and Approximate Maximum Flow.” <i>50th International Colloquium on Automata, Languages, and Programming</i>, vol. 261, 69, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:<a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.69\">10.4230/LIPIcs.ICALP.2023.69</a>.","ama":"Goranci G, Henzinger M. Efficient data structures for incremental exact and approximate maximum flow. In: <i>50th International Colloquium on Automata, Languages, and Programming</i>. Vol 261. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:<a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.69\">10.4230/LIPIcs.ICALP.2023.69</a>"},"publication_identifier":{"issn":["1868-8969"],"isbn":["9783959772785"]},"file":[{"content_type":"application/pdf","date_created":"2023-08-21T06:59:05Z","file_name":"2023_LIPIcsICALP_Goranci.pdf","checksum":"074177e815a1656de5d4071c7a3dffa6","creator":"dernst","file_size":875910,"relation":"main_file","file_id":"14089","date_updated":"2023-08-21T06:59:05Z","access_level":"open_access","success":1}],"file_date_updated":"2023-08-21T06:59:05Z","language":[{"iso":"eng"}],"acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant agreement No.\r\n101019564 “The Design of Modern Fully Dynamic Data Structures (MoDynStruct)” and from the\r\nAustrian Science Fund (FWF) project “Static and Dynamic Hierarchical Graph Decompositions”,\r\nI 5982-N, and project “Fast Algorithms for a Reactive Network Layer (ReactNet)”, P 33775-N, with additional funding from the netidee SCIENCE Stiftung, 2020–2024.\r\nThis work was done in part while Gramoz Goranci was at Institute for Theoretical Studies, ETH Zurich, Switzerland. There, he was supported by Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zürich Foundation. We also thank Richard Peng, Thatchaphol Saranurak, Sebastian Forster and Sushant Sachdeva for helpful discussions, and the anonymous reviewers for their insightful comments.","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version"},{"ec_funded":1,"publication":"50th International Colloquium on Automata, Languages, and Programming","ddc":["000"],"project":[{"call_identifier":"H2020","name":"The design and evaluation of modern fully dynamic data structures","grant_number":"101019564","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62"},{"_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103","grant_number":"I05982","name":"Static and Dynamic Hierarchical Graph Decompositions"},{"_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe","name":"Fast Algorithms for a Reactive Network Layer","grant_number":"P33775"}],"abstract":[{"lang":"eng","text":"The maximization of submodular functions have found widespread application in areas such as machine learning, combinatorial optimization, and economics, where practitioners often wish to enforce various constraints; the matroid constraint has been investigated extensively due to its algorithmic properties and expressive power. Though tight approximation algorithms for general matroid constraints exist in theory, the running times of such algorithms typically scale quadratically, and are not practical for truly large scale settings. Recent progress has focused on fast algorithms for important classes of matroids given in explicit form. Currently, nearly-linear time algorithms only exist for graphic and partition matroids [Alina Ene and Huy L. Nguyen, 2019]. In this work, we develop algorithms for monotone submodular maximization constrained by graphic, transversal matroids, or laminar matroids in time near-linear in the size of their representation. Our algorithms achieve an optimal approximation of 1-1/e-ε and both generalize and accelerate the results of Ene and Nguyen [Alina Ene and Huy L. Nguyen, 2019]. In fact, the running time of our algorithm cannot be improved within the fast continuous greedy framework of Badanidiyuru and Vondrák [Ashwinkumar Badanidiyuru and Jan Vondrák, 2014].\r\nTo achieve near-linear running time, we make use of dynamic data structures that maintain bases with approximate maximum cardinality and weight under certain element updates. These data structures need to support a weight decrease operation and a novel Freeze operation that allows the algorithm to freeze elements (i.e. force to be contained) in its basis regardless of future data structure operations. For the laminar matroid, we present a new dynamic data structure using the top tree interface of Alstrup, Holm, de Lichtenberg, and Thorup [Stephen Alstrup et al., 2005] that maintains the maximum weight basis under insertions and deletions of elements in O(log n) time. This data structure needs to support certain subtree query and path update operations that are performed every insertion and deletion that are non-trivial to handle in conjunction. For the transversal matroid the Freeze operation corresponds to requiring the data structure to keep a certain set S of vertices matched, a property that we call S-stability. While there is a large body of work on dynamic matching algorithms, none are S-stable and maintain an approximate maximum weight matching under vertex updates. We give the first such algorithm for bipartite graphs with total running time linear (up to log factors) in the number of edges."}],"volume":261,"alternative_title":["LIPIcs"],"scopus_import":"1","day":"01","file":[{"date_updated":"2023-08-21T07:04:36Z","access_level":"open_access","success":1,"creator":"dernst","file_size":930943,"relation":"main_file","file_id":"14090","date_created":"2023-08-21T07:04:36Z","file_name":"2023_LIPIcsICALP_HenzingerM.pdf","checksum":"a5eef225014e003efbfbe4830fdd23cb","content_type":"application/pdf"}],"file_date_updated":"2023-08-21T07:04:36Z","citation":{"ista":"Henzinger M, Liu P, Vondrák J, Zheng DW. 2023. Faster submodular maximization for several classes of matroids. 50th International Colloquium on Automata, Languages, and Programming. ICALP: Automata, Languages and Programming, LIPIcs, vol. 261, 74.","mla":"Henzinger, Monika, et al. “Faster Submodular Maximization for Several Classes of Matroids.” <i>50th International Colloquium on Automata, Languages, and Programming</i>, vol. 261, 74, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:<a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.74\">10.4230/LIPIcs.ICALP.2023.74</a>.","ama":"Henzinger M, Liu P, Vondrák J, Zheng DW. Faster submodular maximization for several classes of matroids. In: <i>50th International Colloquium on Automata, Languages, and Programming</i>. Vol 261. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:<a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.74\">10.4230/LIPIcs.ICALP.2023.74</a>","ieee":"M. Henzinger, P. Liu, J. Vondrák, and D. W. Zheng, “Faster submodular maximization for several classes of matroids,” in <i>50th International Colloquium on Automata, Languages, and Programming</i>, Paderborn, Germany, 2023, vol. 261.","chicago":"Henzinger, Monika, Paul Liu, Jan Vondrák, and Da Wei Zheng. “Faster Submodular Maximization for Several Classes of Matroids.” In <i>50th International Colloquium on Automata, Languages, and Programming</i>, Vol. 261. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. <a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.74\">https://doi.org/10.4230/LIPIcs.ICALP.2023.74</a>.","apa":"Henzinger, M., Liu, P., Vondrák, J., &#38; Zheng, D. W. (2023). Faster submodular maximization for several classes of matroids. In <i>50th International Colloquium on Automata, Languages, and Programming</i> (Vol. 261). Paderborn, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.ICALP.2023.74\">https://doi.org/10.4230/LIPIcs.ICALP.2023.74</a>","short":"M. Henzinger, P. Liu, J. Vondrák, D.W. Zheng, in:, 50th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023."},"publication_identifier":{"isbn":["9783959772785"],"issn":["1868-8969"]},"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"language":[{"iso":"eng"}],"acknowledgement":" Monika Henzinger: This project has received funding from the European Research Council\r\n(ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant\r\nagreement No. 101019564 “The Design of Modern Fully Dynamic Data Structures (MoDynStruct)” and from the Austrian Science Fund (FWF) project “Static and Dynamic Hierarchical Graph Decompositions”, I 5982-N, and project “Fast Algorithms for a Reactive Network Layer (ReactNet)”, P 33775-N, with additional funding from the netidee SCIENCE Stiftung, 2020–2024. Jan Vondrák: Supported by NSF Award 2127781.","intvolume":"       261","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","oa":1,"author":[{"last_name":"Henzinger","full_name":"Henzinger, Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","first_name":"Monika H","orcid":"0000-0002-5008-6530"},{"first_name":"Paul","full_name":"Liu, Paul","last_name":"Liu"},{"last_name":"Vondrák","full_name":"Vondrák, Jan","first_name":"Jan"},{"first_name":"Da Wei","full_name":"Zheng, Da Wei","last_name":"Zheng"}],"corr_author":"1","_id":"14086","date_updated":"2025-07-10T11:50:45Z","title":"Faster submodular maximization for several classes of matroids","year":"2023","doi":"10.4230/LIPIcs.ICALP.2023.74","has_accepted_license":"1","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","article_processing_charge":"Yes","month":"07","department":[{"_id":"MoHe"}],"publication_status":"published","date_created":"2023-08-20T22:01:14Z","external_id":{"arxiv":["2305.00122"]},"conference":{"name":"ICALP: Automata, Languages and Programming","end_date":"2023-07-14","location":"Paderborn, Germany","start_date":"2023-07-10"},"article_number":"74","date_published":"2023-07-01T00:00:00Z","type":"conference","arxiv":1,"fulldoi":"https://doi.org/10.4230/LIPIcs.ICALP.2023.74"},{"abstract":[{"text":"Polar active matter of self-propelled particles sustain spontaneous flows through the full-integer topological defects. We study theoretically the incompressible flow profiles around ±1 defects induced by polar and dipolar active forces. We show that dipolar forces induce vortical flows around the +1 defect, while the flow around the −1 defect has an 8-fold rotational symmetry. The vortical flow changes its chirality near the +1 defect core in the absence of the friction with a substrate. We show analytically that the flow induced by polar active forces is vortical near the +1 defect and is 4-fold symmetric near the −1 defect, while it becomes uniform in the far-field. For a pair of oppositely charged defects, this polar flow contributes to a mutual interaction force that depends only on the orientation of the defect pair relative to the background polarization, and that enhances defect pair annihilation. This is in contradiction with the effect of dipolar active forces which decay inversely proportional with the defect separation distance. As such, our analyses reveals a long-ranged mechanism for the pairwise interaction between topological defects in polar active matter.","lang":"eng"}],"volume":39,"scopus_import":"1","article_type":"original","day":"01","ddc":["540"],"publication":"Soft Matter","page":"7513-7527","language":[{"iso":"eng"}],"acknowledgement":"J. Rø and L. A. acknowledge support from the Research Council of Norway through the Center of Excellence funding scheme, Project No. 262644 (PoreLab). A. D. acknowledges funding from the Novo Nordisk Foundation (grant No. NNF18SA0035142 and NERD grant No. NNF21OC0068687), Villum Fonden Grant no. 29476, and the European Union via the ERC-Starting Grant PhysCoMeT. Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.","oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"citation":{"short":"J. Rønning, J.B. Renaud, A. Doostmohammadi, L. Angheluta, Soft Matter 39 (2023) 7513–7527.","apa":"Rønning, J., Renaud, J. B., Doostmohammadi, A., &#38; Angheluta, L. (2023). Spontaneous flows and dynamics of full-integer topological defects in polar active matter. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/d3sm00316g\">https://doi.org/10.1039/d3sm00316g</a>","chicago":"Rønning, Jonas, Julian B Renaud, Amin Doostmohammadi, and Luiza Angheluta. “Spontaneous Flows and Dynamics of Full-Integer Topological Defects in Polar Active Matter.” <i>Soft Matter</i>. Royal Society of Chemistry, 2023. <a href=\"https://doi.org/10.1039/d3sm00316g\">https://doi.org/10.1039/d3sm00316g</a>.","ieee":"J. Rønning, J. B. Renaud, A. Doostmohammadi, and L. Angheluta, “Spontaneous flows and dynamics of full-integer topological defects in polar active matter,” <i>Soft Matter</i>, vol. 39. Royal Society of Chemistry, pp. 7513–7527, 2023.","ama":"Rønning J, Renaud JB, Doostmohammadi A, Angheluta L. Spontaneous flows and dynamics of full-integer topological defects in polar active matter. <i>Soft Matter</i>. 2023;39:7513-7527. doi:<a href=\"https://doi.org/10.1039/d3sm00316g\">10.1039/d3sm00316g</a>","mla":"Rønning, Jonas, et al. “Spontaneous Flows and Dynamics of Full-Integer Topological Defects in Polar Active Matter.” <i>Soft Matter</i>, vol. 39, Royal Society of Chemistry, 2023, pp. 7513–27, doi:<a href=\"https://doi.org/10.1039/d3sm00316g\">10.1039/d3sm00316g</a>.","ista":"Rønning J, Renaud JB, Doostmohammadi A, Angheluta L. 2023. Spontaneous flows and dynamics of full-integer topological defects in polar active matter. Soft Matter. 39, 7513–7527."},"publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"file":[{"content_type":"application/pdf","file_name":"2023_SoftMatter_Ronning.pdf","checksum":"b936747170d0b708172b518078c4081a","date_created":"2024-01-30T12:48:24Z","file_size":7660662,"relation":"main_file","file_id":"14908","creator":"dernst","access_level":"open_access","success":1,"date_updated":"2024-01-30T12:48:24Z"}],"file_date_updated":"2024-01-30T12:48:24Z","title":"Spontaneous flows and dynamics of full-integer topological defects in polar active matter","date_updated":"2025-04-23T13:03:12Z","year":"2023","doi":"10.1039/d3sm00316g","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","has_accepted_license":"1","isi":1,"_id":"14087","intvolume":"        39","publisher":"Royal Society of Chemistry","oa":1,"author":[{"last_name":"Rønning","full_name":"Rønning, Jonas","first_name":"Jonas"},{"id":"7af6767d-14eb-11ed-b536-a32449ae867c","first_name":"Julian B","full_name":"Renaud, Julian B","last_name":"Renaud"},{"first_name":"Amin","full_name":"Doostmohammadi, Amin","last_name":"Doostmohammadi"},{"first_name":"Luiza","last_name":"Angheluta","full_name":"Angheluta, Luiza"}],"fulldoi":"https://doi.org/10.1039/d3sm00316g","type":"journal_article","date_published":"2023-09-01T00:00:00Z","arxiv":1,"pmid":1,"date_created":"2023-08-20T22:01:15Z","external_id":{"arxiv":["2303.07063"],"pmid":["37493084"],"isi":["001035766100001"]},"month":"09","article_processing_charge":"Yes (in subscription journal)","department":[{"_id":"GradSch"}],"publication_status":"published"},{"publication":"Mathematical Physics, Analysis and Geometry","ddc":["510"],"abstract":[{"lang":"eng","text":"For the Fröhlich model of the large polaron, we prove that the ground state energy as a function of the total momentum has a unique global minimum at momentum zero. This implies the non-existence of a ground state of the translation invariant Fröhlich Hamiltonian and thus excludes the possibility of a localization transition at finite coupling."}],"volume":26,"scopus_import":"1","article_type":"original","day":"26","file":[{"content_type":"application/pdf","file_name":"2023_MathPhysics_Lampart.pdf","checksum":"f0941cc66cb3ed06a12ca4b7e356cfd6","date_created":"2023-08-23T10:59:15Z","file_size":317026,"relation":"main_file","file_id":"14225","creator":"dernst","access_level":"open_access","success":1,"date_updated":"2023-08-23T10:59:15Z"}],"file_date_updated":"2023-08-23T10:59:15Z","citation":{"ieee":"J. Lampart, D. J. Mitrouskas, and K. Mysliwy, “On the global minimum of the energy–momentum relation for the polaron,” <i>Mathematical Physics, Analysis and Geometry</i>, vol. 26, no. 3. Springer Nature, 2023.","chicago":"Lampart, Jonas, David Johannes Mitrouskas, and Krzysztof Mysliwy. “On the Global Minimum of the Energy–Momentum Relation for the Polaron.” <i>Mathematical Physics, Analysis and Geometry</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s11040-023-09460-x\">https://doi.org/10.1007/s11040-023-09460-x</a>.","apa":"Lampart, J., Mitrouskas, D. J., &#38; Mysliwy, K. (2023). On the global minimum of the energy–momentum relation for the polaron. <i>Mathematical Physics, Analysis and Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11040-023-09460-x\">https://doi.org/10.1007/s11040-023-09460-x</a>","short":"J. Lampart, D.J. Mitrouskas, K. Mysliwy, Mathematical Physics, Analysis and Geometry 26 (2023).","ista":"Lampart J, Mitrouskas DJ, Mysliwy K. 2023. On the global minimum of the energy–momentum relation for the polaron. Mathematical Physics, Analysis and Geometry. 26(3), 17.","mla":"Lampart, Jonas, et al. “On the Global Minimum of the Energy–Momentum Relation for the Polaron.” <i>Mathematical Physics, Analysis and Geometry</i>, vol. 26, no. 3, 17, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1007/s11040-023-09460-x\">10.1007/s11040-023-09460-x</a>.","ama":"Lampart J, Mitrouskas DJ, Mysliwy K. On the global minimum of the energy–momentum relation for the polaron. <i>Mathematical Physics, Analysis and Geometry</i>. 2023;26(3). doi:<a href=\"https://doi.org/10.1007/s11040-023-09460-x\">10.1007/s11040-023-09460-x</a>"},"keyword":["Geometry and Topology","Mathematical Physics"],"publication_identifier":{"eissn":["1572-9656"],"issn":["1385-0172"]},"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"language":[{"iso":"eng"}],"acknowledgement":"D.M. and K.M. thank Robert Seiringer for helpful discussions. Open access funding provided by Institute of Science and Technology (IST Austria). Financial support from the Agence Nationale de la Recherche (ANR) through the projects ANR-17-CE40-0016, ANR-17-CE40-0007-01, ANR-17-EURE-0002 (J.L.) and from the European Union’s Horizon 2020 research and innovation programme under the Maria Skłodowska-Curie grant agreement No. 665386 (K.M.) is gratefully acknowledged.","issue":"3","intvolume":"        26","publisher":"Springer Nature","oa":1,"corr_author":"1","author":[{"first_name":"Jonas","full_name":"Lampart, Jonas","last_name":"Lampart"},{"last_name":"Mitrouskas","full_name":"Mitrouskas, David Johannes","id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d","first_name":"David Johannes"},{"last_name":"Mysliwy","full_name":"Mysliwy, Krzysztof","id":"316457FC-F248-11E8-B48F-1D18A9856A87","first_name":"Krzysztof"}],"isi":1,"_id":"14192","year":"2023","title":"On the global minimum of the energy–momentum relation for the polaron","date_updated":"2024-10-09T21:06:41Z","doi":"10.1007/s11040-023-09460-x","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","has_accepted_license":"1","quality_controlled":"1","month":"07","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"RoSe"}],"publication_status":"published","date_created":"2023-08-22T14:09:47Z","external_id":{"isi":["001032992600001"],"arxiv":["2206.14708"]},"article_number":"17","type":"journal_article","date_published":"2023-07-26T00:00:00Z","arxiv":1,"fulldoi":"https://doi.org/10.1007/s11040-023-09460-x"},{"_id":"14216","quality_controlled":"1","has_accepted_license":"1","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","title":"ASIF: Coupled data turns unimodal models to multimodal without training","date_updated":"2025-05-14T11:28:52Z","corr_author":"1","author":[{"first_name":"Antonio","full_name":"Norelli, Antonio","last_name":"Norelli"},{"first_name":"Marco","last_name":"Fumero","full_name":"Fumero, Marco"},{"full_name":"Maiorca, Valentino","last_name":"Maiorca","first_name":"Valentino"},{"last_name":"Moschella","full_name":"Moschella, Luca","first_name":"Luca"},{"full_name":"Rodolà, Emanuele","last_name":"Rodolà","first_name":"Emanuele"},{"last_name":"Locatello","full_name":"Locatello, Francesco","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","first_name":"Francesco","orcid":"0000-0002-4850-0683"}],"oa":1,"publisher":"Neural Information Processing Systems Foundation","intvolume":"        36","arxiv":1,"related_material":{"link":[{"relation":"software","url":"https://github.com/noranta4/ASIF"}]},"date_published":"2023-10-04T00:00:00Z","type":"conference","publication_status":"published","article_processing_charge":"No","month":"10","department":[{"_id":"FrLo"}],"OA_type":"green","conference":{"name":"NeurIPS: Neural Information Processing Systems","end_date":"2023-12-14","location":"New Orleans, LA, United States","start_date":"2023-12-12"},"external_id":{"arxiv":["2210.01738"]},"date_created":"2023-08-22T14:22:04Z","day":"04","abstract":[{"text":"CLIP proved that aligning visual and language spaces is key to solving many vision tasks without explicit training, but required to train image and text encoders from scratch on a huge dataset. LiT improved this by only training the text encoder and using a pre-trained vision network. In this paper, we show that a common space can be created without any training at all, using single-domain encoders (trained with or without supervision) and a much smaller amount of image-text pairs. Furthermore, our model has unique properties. Most notably, deploying a new version with updated training samples can be done in a matter of seconds. Additionally, the representations in the common space are easily interpretable as every dimension corresponds to the similarity of the input to a unique entry in the multimodal dataset. Experiments on standard zero-shot visual benchmarks demonstrate the typical transfer ability of image-text models. Overall, our method represents a simple yet surprisingly strong baseline for foundation multi-modal models, raising important questions on their data efficiency and on the role of retrieval in machine learning.","lang":"eng"}],"alternative_title":["Advances in Neural Information Processing Systems"],"volume":36,"page":"15303-15319","ddc":["000"],"publication":"37th Conference on Neural Information Processing Systems","oa_version":"Preprint","acknowledgement":"AN, MF, and FL partially worked on ASIF when they were at Amazon Web Services in Tübingen,\r\nGermany. This paper is financially supported by the PRIN 2020 project no.2020TA3K9N (LEGO.AI), PNRR MUR project PE0000013-FAIR, and ERC Grant no.802554 (SPECGEO).","language":[{"iso":"eng"}],"file_date_updated":"2025-02-04T12:16:13Z","file":[{"success":1,"access_level":"open_access","date_updated":"2025-02-04T12:16:13Z","relation":"main_file","file_id":"18994","file_size":12648978,"creator":"dernst","checksum":"e51c90300b92d7135050da5c9e3a8015","file_name":"2023_NeurIPS_Fumero.pdf","date_created":"2025-02-04T12:16:13Z","content_type":"application/pdf"}],"publication_identifier":{"isbn":["9781713899921"]},"citation":{"mla":"Norelli, Antonio, et al. “ASIF: Coupled Data Turns Unimodal Models to Multimodal without Training.” <i>37th Conference on Neural Information Processing Systems</i>, vol. 36, Neural Information Processing Systems Foundation, 2023, pp. 15303–19.","ista":"Norelli A, Fumero M, Maiorca V, Moschella L, Rodolà E, Locatello F. 2023. ASIF: Coupled data turns unimodal models to multimodal without training. 37th Conference on Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems, Advances in Neural Information Processing Systems, vol. 36, 15303–15319.","ama":"Norelli A, Fumero M, Maiorca V, Moschella L, Rodolà E, Locatello F. ASIF: Coupled data turns unimodal models to multimodal without training. In: <i>37th Conference on Neural Information Processing Systems</i>. Vol 36. Neural Information Processing Systems Foundation; 2023:15303-15319.","ieee":"A. Norelli, M. Fumero, V. Maiorca, L. Moschella, E. Rodolà, and F. Locatello, “ASIF: Coupled data turns unimodal models to multimodal without training,” in <i>37th Conference on Neural Information Processing Systems</i>, New Orleans, LA, United States, 2023, vol. 36, pp. 15303–15319.","chicago":"Norelli, Antonio, Marco Fumero, Valentino Maiorca, Luca Moschella, Emanuele Rodolà, and Francesco Locatello. “ASIF: Coupled Data Turns Unimodal Models to Multimodal without Training.” In <i>37th Conference on Neural Information Processing Systems</i>, 36:15303–19. Neural Information Processing Systems Foundation, 2023.","short":"A. Norelli, M. Fumero, V. Maiorca, L. Moschella, E. Rodolà, F. Locatello, in:, 37th Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2023, pp. 15303–15319.","apa":"Norelli, A., Fumero, M., Maiorca, V., Moschella, L., Rodolà, E., &#38; Locatello, F. (2023). ASIF: Coupled data turns unimodal models to multimodal without training. In <i>37th Conference on Neural Information Processing Systems</i> (Vol. 36, pp. 15303–15319). New Orleans, LA, United States: Neural Information Processing Systems Foundation."}},{"publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"citation":{"ieee":"L. Kranabetter <i>et al.</i>, “Nonadiabatic laser-induced alignment dynamics of molecules on a surface,” <i>Physical Review Letters</i>, vol. 131, no. 5. American Physical Society, 2023.","chicago":"Kranabetter, Lorenz, Henrik H. Kristensen, Areg Ghazaryan, Constant A. Schouder, Adam S. Chatterley, Paul Janssen, Frank Jensen, Robert E. Zillich, Mikhail Lemeshko, and Henrik Stapelfeldt. “Nonadiabatic Laser-Induced Alignment Dynamics of Molecules on a Surface.” <i>Physical Review Letters</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/PhysRevLett.131.053201\">https://doi.org/10.1103/PhysRevLett.131.053201</a>.","short":"L. Kranabetter, H.H. Kristensen, A. Ghazaryan, C.A. Schouder, A.S. Chatterley, P. Janssen, F. Jensen, R.E. Zillich, M. Lemeshko, H. Stapelfeldt, Physical Review Letters 131 (2023).","apa":"Kranabetter, L., Kristensen, H. H., Ghazaryan, A., Schouder, C. A., Chatterley, A. S., Janssen, P., … Stapelfeldt, H. (2023). Nonadiabatic laser-induced alignment dynamics of molecules on a surface. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.131.053201\">https://doi.org/10.1103/PhysRevLett.131.053201</a>","mla":"Kranabetter, Lorenz, et al. “Nonadiabatic Laser-Induced Alignment Dynamics of Molecules on a Surface.” <i>Physical Review Letters</i>, vol. 131, no. 5, 053201, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.131.053201\">10.1103/PhysRevLett.131.053201</a>.","ista":"Kranabetter L, Kristensen HH, Ghazaryan A, Schouder CA, Chatterley AS, Janssen P, Jensen F, Zillich RE, Lemeshko M, Stapelfeldt H. 2023. Nonadiabatic laser-induced alignment dynamics of molecules on a surface. Physical Review Letters. 131(5), 053201.","ama":"Kranabetter L, Kristensen HH, Ghazaryan A, et al. Nonadiabatic laser-induced alignment dynamics of molecules on a surface. <i>Physical Review Letters</i>. 2023;131(5). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.131.053201\">10.1103/PhysRevLett.131.053201</a>"},"issue":"5","acknowledgement":"H. S. acknowledges support from The Villum Foundation through a Villum Investigator Grant No. 25886. M. L. acknowledges support by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). F. J. and R. E. Z. acknowledge support from the Centre for Scientific Computing, Aarhus and the JKU scientific computing administration, Linz, respectively.","language":[{"iso":"eng"}],"oa_version":"Preprint","publication":"Physical Review Letters","ec_funded":1,"article_type":"original","day":"04","scopus_import":"1","volume":131,"abstract":[{"text":"We demonstrate that a sodium dimer, Na2(13Σ+u), residing on the surface of a helium nanodroplet, can be set into rotation by a nonresonant 1.0 ps infrared laser pulse. The time-dependent degree of alignment measured, exhibits a periodic, gradually decreasing structure that deviates qualitatively from that expected for gas-phase dimers. Comparison to alignment dynamics calculated from the time-dependent rotational Schrödinger equation shows that the deviation is due to the alignment dependent interaction between the dimer and the droplet surface. This interaction confines the dimer to the tangential plane of the droplet surface at the point where it resides and is the reason that the observed alignment dynamics is also well described by a 2D quantum rotor model.","lang":"eng"}],"project":[{"call_identifier":"H2020","name":"Angulon: physics and applications of a new quasiparticle","grant_number":"801770","_id":"2688CF98-B435-11E9-9278-68D0E5697425"}],"article_number":"053201","external_id":{"isi":["001101784100001"],"arxiv":["2308.15247"],"pmid":["37595218"]},"date_created":"2023-08-27T22:01:16Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2308.15247"}],"publication_status":"published","department":[{"_id":"MiLe"}],"article_processing_charge":"No","month":"08","fulldoi":"https://doi.org/10.1103/PhysRevLett.131.053201","arxiv":1,"pmid":1,"type":"journal_article","date_published":"2023-08-04T00:00:00Z","author":[{"first_name":"Lorenz","last_name":"Kranabetter","full_name":"Kranabetter, Lorenz"},{"first_name":"Henrik H.","full_name":"Kristensen, Henrik H.","last_name":"Kristensen"},{"id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","first_name":"Areg","orcid":"0000-0001-9666-3543","last_name":"Ghazaryan","full_name":"Ghazaryan, Areg"},{"first_name":"Constant A.","last_name":"Schouder","full_name":"Schouder, Constant A."},{"first_name":"Adam S.","full_name":"Chatterley, Adam S.","last_name":"Chatterley"},{"full_name":"Janssen, Paul","last_name":"Janssen","first_name":"Paul"},{"full_name":"Jensen, Frank","last_name":"Jensen","first_name":"Frank"},{"first_name":"Robert E.","last_name":"Zillich","full_name":"Zillich, Robert E."},{"full_name":"Lemeshko, Mikhail","last_name":"Lemeshko","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail"},{"last_name":"Stapelfeldt","full_name":"Stapelfeldt, Henrik","first_name":"Henrik"}],"oa":1,"publisher":"American Physical Society","intvolume":"       131","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","quality_controlled":"1","doi":"10.1103/PhysRevLett.131.053201","date_updated":"2025-04-14T07:48:54Z","title":"Nonadiabatic laser-induced alignment dynamics of molecules on a surface","year":"2023","isi":1,"_id":"14238"},{"language":[{"iso":"eng"}],"acknowledgement":"We thank Agnieszka Bodzenta-Skibińska, Paolo Cascini, Wahei Hara, Sándor Kovács, Alexander Kuznetsov, Mircea Musta  ă, Nebojsa Pavic, Pavel Sechin, and Michael Wemyss for discussions and e-mail correspondence. We also thank the anonymous referee for the helpful comments. M.M. was supported by the Institute of Science and Technology Austria. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 101034413. E.S. was partially supported by the EPSRC grant EP/T019379/1 “Derived categories and algebraic K-theory of singularities”, and by the ERC Synergy grant “Modern Aspects of Geometry: Categories, Cycles and Cohomology of Hyperkähler Varieties.”\r\n\r\n","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","citation":{"apa":"Mauri, M., &#38; Shinder, E. (2023). Homological Bondal-Orlov localization conjecture for rational singularities. <i>Forum of Mathematics, Sigma</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/fms.2023.65\">https://doi.org/10.1017/fms.2023.65</a>","short":"M. Mauri, E. Shinder, Forum of Mathematics, Sigma 11 (2023).","chicago":"Mauri, Mirko, and Evgeny Shinder. “Homological Bondal-Orlov Localization Conjecture for Rational Singularities.” <i>Forum of Mathematics, Sigma</i>. Cambridge University Press, 2023. <a href=\"https://doi.org/10.1017/fms.2023.65\">https://doi.org/10.1017/fms.2023.65</a>.","ieee":"M. Mauri and E. Shinder, “Homological Bondal-Orlov localization conjecture for rational singularities,” <i>Forum of Mathematics, Sigma</i>, vol. 11. Cambridge University Press, 2023.","ama":"Mauri M, Shinder E. Homological Bondal-Orlov localization conjecture for rational singularities. <i>Forum of Mathematics, Sigma</i>. 2023;11. doi:<a href=\"https://doi.org/10.1017/fms.2023.65\">10.1017/fms.2023.65</a>","ista":"Mauri M, Shinder E. 2023. Homological Bondal-Orlov localization conjecture for rational singularities. Forum of Mathematics, Sigma. 11, e66.","mla":"Mauri, Mirko, and Evgeny Shinder. “Homological Bondal-Orlov Localization Conjecture for Rational Singularities.” <i>Forum of Mathematics, Sigma</i>, vol. 11, e66, Cambridge University Press, 2023, doi:<a href=\"https://doi.org/10.1017/fms.2023.65\">10.1017/fms.2023.65</a>."},"publication_identifier":{"eissn":["2050-5094"]},"file":[{"checksum":"c36241750cc5cb06890aec0ecdfee626","file_name":"2023_ForumMathematics_Mauri.pdf","date_created":"2023-09-05T06:43:11Z","content_type":"application/pdf","success":1,"access_level":"open_access","date_updated":"2023-09-05T06:43:11Z","relation":"main_file","file_id":"14266","file_size":280865,"creator":"dernst"}],"file_date_updated":"2023-09-05T06:43:11Z","volume":11,"abstract":[{"lang":"eng","text":"Given a resolution of rational singularities  π:X~→X  over a field of characteristic zero, we use a Hodge-theoretic argument to prove that the image of the functor  Rπ∗:Db(X~)→Db(X)\r\n  between bounded derived categories of coherent sheaves generates  Db(X)\r\n  as a triangulated category. This gives a weak version of the Bondal–Orlov localization conjecture [BO02], answering a question from [PS21]. The same result is established more generally for proper (not necessarily birational) morphisms  π:X~→X , with  X~\r\n  smooth, satisfying  Rπ∗(OX~)=OX ."}],"day":"03","article_type":"original","scopus_import":"1","project":[{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"ddc":["510"],"publication":"Forum of Mathematics, Sigma","ec_funded":1,"fulldoi":"https://doi.org/10.1017/fms.2023.65","date_published":"2023-08-03T00:00:00Z","type":"journal_article","arxiv":1,"date_created":"2023-08-27T22:01:16Z","article_number":"e66","external_id":{"arxiv":["2212.06786"],"isi":["001041926700001"]},"department":[{"_id":"TaHa"}],"month":"08","article_processing_charge":"Yes","publication_status":"published","doi":"10.1017/fms.2023.65","date_updated":"2025-04-14T07:54:52Z","year":"2023","title":"Homological Bondal-Orlov localization conjecture for rational singularities","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","has_accepted_license":"1","_id":"14239","isi":1,"publisher":"Cambridge University Press","intvolume":"        11","author":[{"last_name":"Mauri","full_name":"Mauri, Mirko","id":"2cf70c34-09c1-11ed-bd8d-c34fac206130","first_name":"Mirko"},{"full_name":"Shinder, Evgeny","last_name":"Shinder","first_name":"Evgeny"}],"oa":1,"corr_author":"1"},{"ddc":["000"],"publication":"ACM Transactions on Graphics","abstract":[{"text":"This paper introduces a novel method for simulating large bodies of water as a height field. At the start of each time step, we partition the waves into a bulk flow (which approximately satisfies the assumptions of the shallow water equations) and surface waves (which approximately satisfy the assumptions of Airy wave theory). We then solve the two wave regimes separately using appropriate state-of-the-art techniques, and re-combine the resulting wave velocities at the end of each step. This strategy leads to the first heightfield wave model capable of simulating complex interactions between both deep and shallow water effects, like the waves from a boat wake sloshing up onto a beach, or a dam break producing wave interference patterns and eddies. We also analyze the numerical dispersion created by our method and derive an exact correction factor for waves at a constant water depth, giving us a numerically perfect re-creation of theoretical water wave dispersion patterns.","lang":"eng"}],"volume":42,"scopus_import":"1","day":"01","article_type":"original","project":[{"grant_number":"101045083","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088"}],"citation":{"chicago":"Jeschke, Stefan, and Chris Wojtan. “Generalizing Shallow Water Simulations with Dispersive Surface Waves.” <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3592098\">https://doi.org/10.1145/3592098</a>.","ieee":"S. Jeschke and C. Wojtan, “Generalizing shallow water simulations with dispersive surface waves,” <i>ACM Transactions on Graphics</i>, vol. 42, no. 4. Association for Computing Machinery, 2023.","apa":"Jeschke, S., &#38; Wojtan, C. (2023). Generalizing shallow water simulations with dispersive surface waves. <i>ACM Transactions on Graphics</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3592098\">https://doi.org/10.1145/3592098</a>","short":"S. Jeschke, C. Wojtan, ACM Transactions on Graphics 42 (2023).","ista":"Jeschke S, Wojtan C. 2023. Generalizing shallow water simulations with dispersive surface waves. ACM Transactions on Graphics. 42(4), 83.","mla":"Jeschke, Stefan, and Chris Wojtan. “Generalizing Shallow Water Simulations with Dispersive Surface Waves.” <i>ACM Transactions on Graphics</i>, vol. 42, no. 4, 83, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3592098\">10.1145/3592098</a>.","ama":"Jeschke S, Wojtan C. Generalizing shallow water simulations with dispersive surface waves. <i>ACM Transactions on Graphics</i>. 2023;42(4). doi:<a href=\"https://doi.org/10.1145/3592098\">10.1145/3592098</a>"},"publication_identifier":{"issn":["0730-0301"],"eissn":["1557-7368"]},"file":[{"success":1,"access_level":"open_access","date_updated":"2023-12-21T12:26:40Z","relation":"main_file","file_id":"14704","file_size":511572575,"creator":"sjeschke","checksum":"1d178bb2f8011d9f5aedda6427e18c7a","file_name":"PaperVideo_final.mp4","date_created":"2023-12-21T12:26:40Z","content_type":"video/mp4"},{"creator":"dernst","relation":"main_file","file_id":"14725","file_size":7469177,"date_updated":"2024-01-02T09:34:27Z","success":1,"access_level":"open_access","content_type":"application/pdf","date_created":"2024-01-02T09:34:27Z","checksum":"a49b2e744d5cd1276bb8b2e0ce6dc638","file_name":"2023_ACMToG_Jeschke.pdf"}],"file_date_updated":"2024-01-02T09:34:27Z","language":[{"iso":"eng"}],"acknowledgement":"We thank Georg Sperl for helping with early research for this paper, Mickael Ly and Yi-Lu Chen for proofreading, and members of the ISTA Visual Computing Group for general feedback. This project was funded in part by the European Research Council (ERC Consolidator Grant 101045083 CoDiNA).\r\nThe motorboat and sailboat were modeled by Sergei and the palmtrees by YadroGames. The environment map was created by Emil Persson.","issue":"4","oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"intvolume":"        42","publisher":"Association for Computing Machinery","oa":1,"author":[{"last_name":"Jeschke","full_name":"Jeschke, Stefan","first_name":"Stefan","id":"44D6411A-F248-11E8-B48F-1D18A9856A87"},{"id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","first_name":"Christopher J","orcid":"0000-0001-6646-5546","last_name":"Wojtan","full_name":"Wojtan, Christopher J"}],"corr_author":"1","year":"2023","date_updated":"2025-04-14T08:01:13Z","title":"Generalizing shallow water simulations with dispersive surface waves","acknowledged_ssus":[{"_id":"ScienComp"}],"doi":"10.1145/3592098","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","status":"public","has_accepted_license":"1","isi":1,"_id":"14240","date_created":"2023-08-27T22:01:17Z","external_id":{"isi":["001044671300049"]},"article_number":"83","article_processing_charge":"Yes (in subscription journal)","month":"08","department":[{"_id":"ChWo"}],"publication_status":"published","fulldoi":"https://doi.org/10.1145/3592098","date_published":"2023-08-01T00:00:00Z","type":"journal_article"},{"language":[{"iso":"eng"}],"acknowledgement":"The authors would like to thank Yuki Koyama and Takeo Igarashi for early discussions, and Yuta Yaguchi for support in 3D printing. This research is partially supported by the Israel Science Foundation grant number 1390/19.\r\n","oa_version":"Preprint","citation":{"ama":"Tojo K, Shamir A, Bickel B, Umetani N. Stealth shaper: Reflectivity optimization as surface stylization. In: <i>SIGGRAPH 2023 Conference Proceedings</i>. Association for Computing Machinery; 2023. doi:<a href=\"https://doi.org/10.1145/3588432.3591542\">10.1145/3588432.3591542</a>","ista":"Tojo K, Shamir A, Bickel B, Umetani N. 2023. Stealth shaper: Reflectivity optimization as surface stylization. SIGGRAPH 2023 Conference Proceedings. SIGGRAPH: Computer Graphics and Interactive Techniques Conference, 20.","mla":"Tojo, Kenji, et al. “Stealth Shaper: Reflectivity Optimization as Surface Stylization.” <i>SIGGRAPH 2023 Conference Proceedings</i>, 20, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3588432.3591542\">10.1145/3588432.3591542</a>.","apa":"Tojo, K., Shamir, A., Bickel, B., &#38; Umetani, N. (2023). Stealth shaper: Reflectivity optimization as surface stylization. In <i>SIGGRAPH 2023 Conference Proceedings</i>. Los Angeles, CA, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3588432.3591542\">https://doi.org/10.1145/3588432.3591542</a>","short":"K. Tojo, A. Shamir, B. Bickel, N. Umetani, in:, SIGGRAPH 2023 Conference Proceedings, Association for Computing Machinery, 2023.","chicago":"Tojo, Kenji, Ariel Shamir, Bernd Bickel, and Nobuyuki Umetani. “Stealth Shaper: Reflectivity Optimization as Surface Stylization.” In <i>SIGGRAPH 2023 Conference Proceedings</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3588432.3591542\">https://doi.org/10.1145/3588432.3591542</a>.","ieee":"K. Tojo, A. Shamir, B. Bickel, and N. Umetani, “Stealth shaper: Reflectivity optimization as surface stylization,” in <i>SIGGRAPH 2023 Conference Proceedings</i>, Los Angeles, CA, United States, 2023."},"publication_identifier":{"isbn":["9798400701597"]},"abstract":[{"lang":"eng","text":"We present a technique to optimize the reflectivity of a surface while preserving its overall shape. The naïve optimization of the mesh vertices using the gradients of reflectivity simulations results in undesirable distortion. In contrast, our robust formulation optimizes the surface normal as an independent variable that bridges the reflectivity term with differential rendering, and the regularization term with as-rigid-as-possible elastic energy. We further adaptively subdivide the input mesh to improve the convergence. Consequently, our method can minimize the retroreflectivity of a wide range of input shapes, resulting in sharply creased shapes ubiquitous among stealth aircraft and Sci-Fi vehicles. Furthermore, by changing the reward for the direction of the outgoing light directions, our method can be applied to other reflectivity design tasks, such as the optimization of architectural walls to concentrate light in a specific region. We have tested the proposed method using light-transport simulations and real-world 3D-printed objects."}],"scopus_import":"1","day":"23","publication":"SIGGRAPH 2023 Conference Proceedings","fulldoi":"https://doi.org/10.1145/3588432.3591542","date_published":"2023-07-23T00:00:00Z","type":"conference","arxiv":1,"date_created":"2023-08-27T22:01:17Z","conference":{"location":"Los Angeles, CA, United States","start_date":"2023-08-06","end_date":"2023-08-10","name":"SIGGRAPH: Computer Graphics and Interactive Techniques Conference"},"external_id":{"isi":["001117690500020"],"arxiv":["2305.05944"]},"article_number":"20","month":"07","article_processing_charge":"No","department":[{"_id":"BeBi"}],"publication_status":"published","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2305.05944","open_access":"1"}],"title":"Stealth shaper: Reflectivity optimization as surface stylization","date_updated":"2025-09-09T12:49:15Z","year":"2023","doi":"10.1145/3588432.3591542","quality_controlled":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","status":"public","_id":"14241","isi":1,"publisher":"Association for Computing Machinery","author":[{"full_name":"Tojo, Kenji","last_name":"Tojo","first_name":"Kenji"},{"full_name":"Shamir, Ariel","last_name":"Shamir","first_name":"Ariel"},{"orcid":"0000-0001-6511-9385","id":"49876194-F248-11E8-B48F-1D18A9856A87","first_name":"Bernd","full_name":"Bickel, Bernd","last_name":"Bickel"},{"first_name":"Nobuyuki","last_name":"Umetani","full_name":"Umetani, Nobuyuki"}],"oa":1,"corr_author":"1"},{"author":[{"full_name":"Lechner, Mathias","last_name":"Lechner","first_name":"Mathias","id":"3DC22916-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-4681-1699","first_name":"Dorde","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","full_name":"Zikelic, Dorde","last_name":"Zikelic"},{"first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","orcid":"0000-0002-2985-7724","last_name":"Henzinger","full_name":"Henzinger, Thomas A"},{"first_name":"Daniela","full_name":"Rus, Daniela","last_name":"Rus"}],"oa":1,"intvolume":"        37","publisher":"Association for the Advancement of Artificial Intelligence","quality_controlled":"1","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1609/aaai.v37i12.26747","date_updated":"2025-03-31T16:01:08Z","year":"2023","title":"Quantization-aware interval bound propagation for training certifiably robust quantized neural networks","_id":"14242","conference":{"location":"Washington, DC, United States","start_date":"2023-02-07","name":"AAAI: Conference on Artificial Intelligence","end_date":"2023-02-14"},"external_id":{"arxiv":["2211.16187"]},"date_created":"2023-08-27T22:01:17Z","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2211.16187","open_access":"1"}],"publication_status":"published","department":[{"_id":"ToHe"},{"_id":"KrCh"}],"article_processing_charge":"No","month":"06","fulldoi":"https://doi.org/10.1609/aaai.v37i12.26747","arxiv":1,"type":"conference","date_published":"2023-06-26T00:00:00Z","page":"14964-14973","publication":"Proceedings of the 37th AAAI Conference on Artificial Intelligence","ec_funded":1,"day":"26","scopus_import":"1","volume":37,"abstract":[{"lang":"eng","text":"We study the problem of training and certifying adversarially robust quantized neural networks (QNNs). Quantization is a technique for making neural networks more efficient by running them using low-bit integer arithmetic and is therefore commonly adopted in industry. Recent work has shown that floating-point neural networks that have been verified to be robust can become vulnerable to adversarial attacks after quantization, and certification of the quantized representation is necessary to guarantee robustness. In this work, we present quantization-aware interval bound propagation (QA-IBP), a novel method for training robust QNNs. Inspired by advances in robust learning of non-quantized networks, our training algorithm computes the gradient of an abstract representation of the actual network. Unlike existing approaches, our method can handle the discrete semantics of QNNs. Based on QA-IBP, we also develop a complete verification procedure for verifying the adversarial robustness of QNNs, which is guaranteed to terminate and produce a correct answer. Compared to existing approaches, the key advantage of our verification procedure is that it runs entirely on GPU or other accelerator devices. We demonstrate experimentally that our approach significantly outperforms existing methods and establish the new state-of-the-art for training and certifying the robustness of QNNs."}],"project":[{"call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software","grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d"},{"call_identifier":"H2020","grant_number":"863818","name":"Formal Methods for Stochastic Models: Algorithms and Applications","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"},{"name":"International IST Doctoral Program","grant_number":"665385","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"publication_identifier":{"isbn":["9781577358800"]},"citation":{"ieee":"M. Lechner, D. Zikelic, K. Chatterjee, T. A. Henzinger, and D. Rus, “Quantization-aware interval bound propagation for training certifiably robust quantized neural networks,” in <i>Proceedings of the 37th AAAI Conference on Artificial Intelligence</i>, Washington, DC, United States, 2023, vol. 37, no. 12, pp. 14964–14973.","chicago":"Lechner, Mathias, Dorde Zikelic, Krishnendu Chatterjee, Thomas A Henzinger, and Daniela Rus. “Quantization-Aware Interval Bound Propagation for Training Certifiably Robust Quantized Neural Networks.” In <i>Proceedings of the 37th AAAI Conference on Artificial Intelligence</i>, 37:14964–73. Association for the Advancement of Artificial Intelligence, 2023. <a href=\"https://doi.org/10.1609/aaai.v37i12.26747\">https://doi.org/10.1609/aaai.v37i12.26747</a>.","apa":"Lechner, M., Zikelic, D., Chatterjee, K., Henzinger, T. A., &#38; Rus, D. (2023). Quantization-aware interval bound propagation for training certifiably robust quantized neural networks. In <i>Proceedings of the 37th AAAI Conference on Artificial Intelligence</i> (Vol. 37, pp. 14964–14973). Washington, DC, United States: Association for the Advancement of Artificial Intelligence. <a href=\"https://doi.org/10.1609/aaai.v37i12.26747\">https://doi.org/10.1609/aaai.v37i12.26747</a>","short":"M. Lechner, D. Zikelic, K. Chatterjee, T.A. Henzinger, D. Rus, in:, Proceedings of the 37th AAAI Conference on Artificial Intelligence, Association for the Advancement of Artificial Intelligence, 2023, pp. 14964–14973.","ista":"Lechner M, Zikelic D, Chatterjee K, Henzinger TA, Rus D. 2023. Quantization-aware interval bound propagation for training certifiably robust quantized neural networks. Proceedings of the 37th AAAI Conference on Artificial Intelligence. AAAI: Conference on Artificial Intelligence vol. 37, 14964–14973.","mla":"Lechner, Mathias, et al. “Quantization-Aware Interval Bound Propagation for Training Certifiably Robust Quantized Neural Networks.” <i>Proceedings of the 37th AAAI Conference on Artificial Intelligence</i>, vol. 37, no. 12, Association for the Advancement of Artificial Intelligence, 2023, pp. 14964–73, doi:<a href=\"https://doi.org/10.1609/aaai.v37i12.26747\">10.1609/aaai.v37i12.26747</a>.","ama":"Lechner M, Zikelic D, Chatterjee K, Henzinger TA, Rus D. Quantization-aware interval bound propagation for training certifiably robust quantized neural networks. In: <i>Proceedings of the 37th AAAI Conference on Artificial Intelligence</i>. Vol 37. Association for the Advancement of Artificial Intelligence; 2023:14964-14973. doi:<a href=\"https://doi.org/10.1609/aaai.v37i12.26747\">10.1609/aaai.v37i12.26747</a>"},"issue":"12","acknowledgement":"This work was supported in part by the ERC-2020-AdG 101020093, ERC CoG 863818 (FoRM-SMArt) and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385. Research was sponsored by the United\r\nStates Air Force Research Laboratory and the United States Air Force Artificial Intelligence Accelerator and was accomplished under Cooperative Agreement Number FA8750-19-2-\r\n1000. The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the official policies, either expressed or implied,\r\nof the United States Air Force or the U.S. Government. The U.S. Government is authorized to reproduce and distribute reprints for Government purposes notwithstanding any copyright\r\nnotation herein. The research was also funded in part by the AI2050 program at Schmidt Futures (Grant G-22-63172) and Capgemini SE.","language":[{"iso":"eng"}],"oa_version":"Preprint"},{"ec_funded":1,"ddc":["510"],"publication":"Proceedings of the London Mathematical Society","page":"958-1027","project":[{"name":"Arithmetic and physics of Higgs moduli spaces","grant_number":"320593","call_identifier":"FP7","_id":"25E549F4-B435-11E9-9278-68D0E5697425"},{"_id":"25E6C798-B435-11E9-9278-68D0E5697425","name":"Arithmetic quantization of character and quiver varities","grant_number":"153627"}],"volume":127,"abstract":[{"text":"In this paper, we determine the motivic class — in particular, the weight polynomial and conjecturally the Poincaré polynomial — of the open de Rham space, defined and studied by Boalch, of certain moduli spaces of irregular meromorphic connections on the trivial rank \r\n bundle on P1. The computation is by motivic Fourier transform. We show that the result satisfies the purity conjecture, that is, it agrees with the pure part of the conjectured mixed Hodge polynomial of the corresponding wild character variety. We also identify the open de Rham spaces with quiver varieties with multiplicities of Yamakawa and Geiss–Leclerc–Schröer. We finish with constructing natural complete hyperkähler metrics on them, which in the four-dimensional cases are expected to be of type ALF.","lang":"eng"}],"article_type":"original","day":"01","scopus_import":"1","file":[{"creator":"dernst","file_id":"14910","relation":"main_file","file_size":651335,"date_updated":"2024-01-30T12:56:00Z","success":1,"access_level":"open_access","content_type":"application/pdf","date_created":"2024-01-30T12:56:00Z","checksum":"2af4d2d6a8ae42f7d3fba0188e79ae82","file_name":"2023_ProcLondonMathSoc_Hausel.pdf"}],"file_date_updated":"2024-01-30T12:56:00Z","citation":{"ista":"Hausel T, Wong ML, Wyss D. 2023. Arithmetic and metric aspects of open de Rham spaces. Proceedings of the London Mathematical Society. 127(4), 958–1027.","mla":"Hausel, Tamás, et al. “Arithmetic and Metric Aspects of Open de Rham Spaces.” <i>Proceedings of the London Mathematical Society</i>, vol. 127, no. 4, Wiley, 2023, pp. 958–1027, doi:<a href=\"https://doi.org/10.1112/plms.12555\">10.1112/plms.12555</a>.","ama":"Hausel T, Wong ML, Wyss D. Arithmetic and metric aspects of open de Rham spaces. <i>Proceedings of the London Mathematical Society</i>. 2023;127(4):958-1027. doi:<a href=\"https://doi.org/10.1112/plms.12555\">10.1112/plms.12555</a>","ieee":"T. Hausel, M. L. Wong, and D. Wyss, “Arithmetic and metric aspects of open de Rham spaces,” <i>Proceedings of the London Mathematical Society</i>, vol. 127, no. 4. Wiley, pp. 958–1027, 2023.","chicago":"Hausel, Tamás, Michael Lennox Wong, and Dimitri Wyss. “Arithmetic and Metric Aspects of Open de Rham Spaces.” <i>Proceedings of the London Mathematical Society</i>. Wiley, 2023. <a href=\"https://doi.org/10.1112/plms.12555\">https://doi.org/10.1112/plms.12555</a>.","apa":"Hausel, T., Wong, M. L., &#38; Wyss, D. (2023). Arithmetic and metric aspects of open de Rham spaces. <i>Proceedings of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/plms.12555\">https://doi.org/10.1112/plms.12555</a>","short":"T. Hausel, M.L. Wong, D. Wyss, Proceedings of the London Mathematical Society 127 (2023) 958–1027."},"publication_identifier":{"eissn":["1460-244X"],"issn":["0024-6115"]},"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","language":[{"iso":"eng"}],"issue":"4","acknowledgement":"We would like to thank Gergely Bérczy, Roger Bielawski, Philip Boalch, Sergey Cherkis, Andrew Dancer, Brent Doran, Eloïse Hamilton, Frances Kirwan, Bernard Leclerc, Emmanuel Letellier, Alessia Mandini, Maxence Mayrand, András Némethi, Szilárd Szabó, and Daisuke Yamakawa for discussions related to the paper. We especially thank the referee for an extensive list of very careful comments. At various stages of this project, the authors were supported by the Advanced Grant “Arithmetic and physics of Higgs moduli spaces” no. 320593 of the European Research Council, by grant no. 153627 and NCCR SwissMAP, both funded by the Swiss National Science Foundation as well as by EPF Lausanne and IST Austria. In the final stages of this project, MLW was supported by SFB/TR 45 “Periods, moduli and arithmetic of algebraic varieties,” subproject M08-10 “Moduli of vector bundles on higher-dimensional varieties.” DW was also supported by the Fondation Sciences Mathématiques de Paris, as well as public grants overseen by the Agence national de la recherche (ANR) of France as part of the Investissements d'avenir program, under reference numbers ANR-10-LABX-0098 and ANR-15-CE40-0008 (Défigéo).","publisher":"Wiley","intvolume":"       127","author":[{"last_name":"Hausel","full_name":"Hausel, Tamás","first_name":"Tamás","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9582-2634"},{"full_name":"Wong, Michael Lennox","last_name":"Wong","first_name":"Michael Lennox"},{"first_name":"Dimitri","last_name":"Wyss","full_name":"Wyss, Dimitri"}],"oa":1,"corr_author":"1","isi":1,"_id":"14244","doi":"10.1112/plms.12555","date_updated":"2025-04-14T09:12:46Z","title":"Arithmetic and metric aspects of open de Rham spaces","year":"2023","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","status":"public","department":[{"_id":"TaHa"}],"month":"10","article_processing_charge":"Yes (via OA deal)","publication_status":"published","date_created":"2023-08-27T22:01:18Z","external_id":{"arxiv":["1807.04057"],"isi":["001049312700001"]},"date_published":"2023-10-01T00:00:00Z","type":"journal_article","arxiv":1,"fulldoi":"https://doi.org/10.1112/plms.12555"},{"year":"2023","title":"Emergence of a Bose polaron in a small ring threaded by the Aharonov-Bohm flux","date_updated":"2024-10-09T21:06:47Z","doi":"10.1038/s42005-023-01281-2","status":"public","has_accepted_license":"1","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14246","isi":1,"publisher":"Springer Nature","intvolume":"         6","author":[{"full_name":"Brauneis, Fabian","last_name":"Brauneis","first_name":"Fabian"},{"orcid":"0000-0001-9666-3543","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","first_name":"Areg","full_name":"Ghazaryan, Areg","last_name":"Ghazaryan"},{"last_name":"Hammer","full_name":"Hammer, Hans-Werner","first_name":"Hans-Werner"},{"id":"37D278BC-F248-11E8-B48F-1D18A9856A87","first_name":"Artem","orcid":"0000-0003-0393-5525","last_name":"Volosniev","full_name":"Volosniev, Artem"}],"corr_author":"1","oa":1,"fulldoi":"https://doi.org/10.1038/s42005-023-01281-2","date_published":"2023-08-22T00:00:00Z","type":"journal_article","arxiv":1,"date_created":"2023-08-28T12:36:49Z","external_id":{"arxiv":["2301.10488"],"isi":["001052577500002"]},"article_number":"224","month":"08","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"MiLe"}],"publication_status":"published","abstract":[{"lang":"eng","text":"The model of a ring threaded by the Aharonov-Bohm flux underlies our understanding of a coupling between gauge potentials and matter. The typical formulation of the model is based upon a single particle picture, and should be extended when interactions with other particles become relevant. Here, we illustrate such an extension for a particle in an Aharonov-Bohm ring subject to interactions with a weakly interacting Bose gas. We show that the ground state of the system can be described using the Bose-polaron concept—a particle dressed by interactions with a bosonic environment. We connect the energy spectrum to the effective mass of the polaron, and demonstrate how to change currents in the system by tuning boson-particle interactions. Our results suggest the Aharonov-Bohm ring as a platform for studying coherence and few- to many-body crossover of quasi-particles that arise from an impurity immersed in a medium."}],"volume":6,"scopus_import":"1","day":"22","article_type":"original","publication":"Communications Physics","ddc":["530"],"language":[{"iso":"eng"}],"acknowledgement":"Open Access funding enabled and organized by Projekt DEAL.\r\nWe would like to thank Jonas Jager for sharing his data with us in the early stages of this project. We thank Joachim Brand and Ray Yang for sharing with us data from Yang et al.46. This work has received funding from the DFG Project no. 413495248 [VO 2437/1-1] (F.B., H.-W.H., A.G.V.). We acknowledge support from the Deutsche Forschungsgemeinschaft (DFG - German Research Foundation) and the Open Access Publishing Fund of the Technical University of Darmstadt.","oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"citation":{"chicago":"Brauneis, Fabian, Areg Ghazaryan, Hans-Werner Hammer, and Artem Volosniev. “Emergence of a Bose Polaron in a Small Ring Threaded by the Aharonov-Bohm Flux.” <i>Communications Physics</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s42005-023-01281-2\">https://doi.org/10.1038/s42005-023-01281-2</a>.","ieee":"F. Brauneis, A. Ghazaryan, H.-W. Hammer, and A. Volosniev, “Emergence of a Bose polaron in a small ring threaded by the Aharonov-Bohm flux,” <i>Communications Physics</i>, vol. 6. Springer Nature, 2023.","short":"F. Brauneis, A. Ghazaryan, H.-W. Hammer, A. Volosniev, Communications Physics 6 (2023).","apa":"Brauneis, F., Ghazaryan, A., Hammer, H.-W., &#38; Volosniev, A. (2023). Emergence of a Bose polaron in a small ring threaded by the Aharonov-Bohm flux. <i>Communications Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s42005-023-01281-2\">https://doi.org/10.1038/s42005-023-01281-2</a>","mla":"Brauneis, Fabian, et al. “Emergence of a Bose Polaron in a Small Ring Threaded by the Aharonov-Bohm Flux.” <i>Communications Physics</i>, vol. 6, 224, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1038/s42005-023-01281-2\">10.1038/s42005-023-01281-2</a>.","ista":"Brauneis F, Ghazaryan A, Hammer H-W, Volosniev A. 2023. Emergence of a Bose polaron in a small ring threaded by the Aharonov-Bohm flux. Communications Physics. 6, 224.","ama":"Brauneis F, Ghazaryan A, Hammer H-W, Volosniev A. Emergence of a Bose polaron in a small ring threaded by the Aharonov-Bohm flux. <i>Communications Physics</i>. 2023;6. doi:<a href=\"https://doi.org/10.1038/s42005-023-01281-2\">10.1038/s42005-023-01281-2</a>"},"keyword":["General Physics and Astronomy"],"publication_identifier":{"issn":["2399-3650"]},"file":[{"access_level":"open_access","success":1,"date_updated":"2023-09-05T08:45:49Z","file_size":855960,"relation":"main_file","file_id":"14268","creator":"dernst","file_name":"2023_CommPhysics_Brauneis.pdf","checksum":"6edfc59b0ee7dc406d0968b05236e83d","date_created":"2023-09-05T08:45:49Z","content_type":"application/pdf"}],"file_date_updated":"2023-09-05T08:45:49Z"},{"intvolume":"        14","publisher":"Springer Nature","oa":1,"author":[{"full_name":"Vierra, Nicholas C.","last_name":"Vierra","first_name":"Nicholas C."},{"last_name":"Ribeiro-Silva","full_name":"Ribeiro-Silva, Luisa","first_name":"Luisa"},{"last_name":"Kirmiz","full_name":"Kirmiz, Michael","first_name":"Michael"},{"last_name":"Van Der List","full_name":"Van Der List, Deborah","first_name":"Deborah"},{"orcid":"0000-0003-0863-4481","id":"45EDD1BC-F248-11E8-B48F-1D18A9856A87","first_name":"Pradeep","full_name":"Bhandari, Pradeep","last_name":"Bhandari"},{"last_name":"Mack","full_name":"Mack, Olivia A.","first_name":"Olivia A."},{"full_name":"Carroll, James","last_name":"Carroll","first_name":"James"},{"id":"3B59276A-F248-11E8-B48F-1D18A9856A87","first_name":"Elodie","last_name":"Le Monnier","full_name":"Le Monnier, Elodie"},{"last_name":"Aicher","full_name":"Aicher, Sue A.","first_name":"Sue A."},{"last_name":"Shigemoto","full_name":"Shigemoto, Ryuichi","first_name":"Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444"},{"full_name":"Trimmer, James S.","last_name":"Trimmer","first_name":"James S."}],"doi":"10.1038/s41467-023-40930-6","year":"2023","date_updated":"2025-09-09T12:50:49Z","title":"Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling","has_accepted_license":"1","quality_controlled":"1","status":"public","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"14253","isi":1,"date_created":"2023-09-03T22:01:14Z","article_number":"5231","external_id":{"isi":["001064563400013"],"pmid":["37633939"]},"department":[{"_id":"RySh"}],"article_processing_charge":"Yes","month":"08","publication_status":"published","fulldoi":"https://doi.org/10.1038/s41467-023-40930-6","type":"journal_article","date_published":"2023-08-26T00:00:00Z","pmid":1,"publication":"Nature Communications","ddc":["570"],"volume":14,"abstract":[{"lang":"eng","text":"Junctions between the endoplasmic reticulum (ER) and the plasma membrane (PM) are specialized membrane contacts ubiquitous in eukaryotic cells. Concentration of intracellular signaling machinery near ER-PM junctions allows these domains to serve critical roles in lipid and Ca2+ signaling and homeostasis. Subcellular compartmentalization of protein kinase A (PKA) signaling also regulates essential cellular functions, however, no specific association between PKA and ER-PM junctional domains is known. Here, we show that in brain neurons type I PKA is directed to Kv2.1 channel-dependent ER-PM junctional domains via SPHKAP, a type I PKA-specific anchoring protein. SPHKAP association with type I PKA regulatory subunit RI and ER-resident VAP proteins results in the concentration of type I PKA between stacked ER cisternae associated with ER-PM junctions. This ER-associated PKA signalosome enables reciprocal regulation between PKA and Ca2+ signaling machinery to support Ca2+ influx and excitation-transcription coupling. These data reveal that neuronal ER-PM junctions support a receptor-independent form of PKA signaling driven by membrane depolarization and intracellular Ca2+, allowing conversion of information encoded in electrical signals into biochemical changes universally recognized throughout the cell."}],"day":"26","article_type":"original","scopus_import":"1","citation":{"ama":"Vierra NC, Ribeiro-Silva L, Kirmiz M, et al. Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling. <i>Nature Communications</i>. 2023;14. doi:<a href=\"https://doi.org/10.1038/s41467-023-40930-6\">10.1038/s41467-023-40930-6</a>","mla":"Vierra, Nicholas C., et al. “Neuronal ER-Plasma Membrane Junctions Couple Excitation to Ca2+-Activated PKA Signaling.” <i>Nature Communications</i>, vol. 14, 5231, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1038/s41467-023-40930-6\">10.1038/s41467-023-40930-6</a>.","ista":"Vierra NC, Ribeiro-Silva L, Kirmiz M, Van Der List D, Bhandari P, Mack OA, Carroll J, Le Monnier E, Aicher SA, Shigemoto R, Trimmer JS. 2023. Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling. Nature Communications. 14, 5231.","short":"N.C. Vierra, L. Ribeiro-Silva, M. Kirmiz, D. Van Der List, P. Bhandari, O.A. Mack, J. Carroll, E. Le Monnier, S.A. Aicher, R. Shigemoto, J.S. Trimmer, Nature Communications 14 (2023).","apa":"Vierra, N. C., Ribeiro-Silva, L., Kirmiz, M., Van Der List, D., Bhandari, P., Mack, O. A., … Trimmer, J. S. (2023). Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-023-40930-6\">https://doi.org/10.1038/s41467-023-40930-6</a>","chicago":"Vierra, Nicholas C., Luisa Ribeiro-Silva, Michael Kirmiz, Deborah Van Der List, Pradeep Bhandari, Olivia A. Mack, James Carroll, et al. “Neuronal ER-Plasma Membrane Junctions Couple Excitation to Ca2+-Activated PKA Signaling.” <i>Nature Communications</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41467-023-40930-6\">https://doi.org/10.1038/s41467-023-40930-6</a>.","ieee":"N. C. Vierra <i>et al.</i>, “Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA signaling,” <i>Nature Communications</i>, vol. 14. Springer Nature, 2023."},"publication_identifier":{"eissn":["2041-1723"]},"file":[{"content_type":"application/pdf","file_name":"2023_NatureComm_Vierra.pdf","checksum":"6ab8aab4e957f626a09a1c73db3388fb","date_created":"2023-09-06T06:50:07Z","file_size":9412549,"file_id":"14270","relation":"main_file","creator":"dernst","access_level":"open_access","success":1,"date_updated":"2023-09-06T06:50:07Z"}],"file_date_updated":"2023-09-06T06:50:07Z","language":[{"iso":"eng"}],"acknowledgement":"We thank Kayla Templeton and Peter Turcanu for technical assistance, Michelle Salemi for assistance with LC-MS data acquisition and analysis, Dr. Belvin Gong for advice on monoclonal antibody generation, Drs. Maria Casas Prat and Eamonn Dickson for assistance with super-resolution TIRF microscopy, Dr. Oscar Cerda for assistance with the design of TAT-FFAT peptides, Dr. Fernando Santana for helpful discussions, and Dr. Jodi Nunnari for a careful reading of our manuscript. We also thank Dr. Alan Howe, Dr. Sohum Mehta, and Dr. Jin Zhang for providing plasmids used in this study. This project was funded by NIH Grants R01NS114210 and R21NS101648 (J.S.T.), and F32NS108519 (N.C.V.).","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version"},{"quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","has_accepted_license":"1","date_updated":"2024-10-09T21:06:47Z","year":"2023","title":"A simple approach to Lieb-Thirring type inequalities","doi":"10.1016/j.jfa.2023.110129","isi":1,"_id":"14254","oa":1,"corr_author":"1","author":[{"full_name":"Seiringer, Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Jan Philip","last_name":"Solovej","full_name":"Solovej, Jan Philip"}],"publisher":"Elsevier","intvolume":"       285","fulldoi":"https://doi.org/10.1016/j.jfa.2023.110129","arxiv":1,"type":"journal_article","date_published":"2023-11-15T00:00:00Z","external_id":{"arxiv":["2303.04504"],"isi":["001071552300001"]},"article_number":"110129","date_created":"2023-09-03T22:01:14Z","publication_status":"published","month":"11","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"RoSe"}],"scopus_import":"1","day":"15","article_type":"original","abstract":[{"text":"In [10] Nam proved a Lieb–Thirring Inequality for the kinetic energy of a fermionic quantum system, with almost optimal (semi-classical) constant and a gradient correction term. We present a stronger version of this inequality, with a much simplified proof. As a corollary we obtain a simple proof of the original Lieb–Thirring inequality.","lang":"eng"}],"volume":285,"publication":"Journal of Functional Analysis","ddc":["510"],"acknowledgement":"J.P.S. thanks the Institute of Science and Technology Austria for the hospitality and support during a visit where this work was done. J.P.S. was also partially supported by the VILLUM Centre of Excellence for the Mathematics of Quantum Theory (QMATH) (grant No. 10059).","issue":"10","language":[{"iso":"eng"}],"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"publication_identifier":{"issn":["0022-1236"],"eissn":["1096-0783"]},"citation":{"short":"R. Seiringer, J.P. Solovej, Journal of Functional Analysis 285 (2023).","apa":"Seiringer, R., &#38; Solovej, J. P. (2023). A simple approach to Lieb-Thirring type inequalities. <i>Journal of Functional Analysis</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jfa.2023.110129\">https://doi.org/10.1016/j.jfa.2023.110129</a>","ieee":"R. Seiringer and J. P. Solovej, “A simple approach to Lieb-Thirring type inequalities,” <i>Journal of Functional Analysis</i>, vol. 285, no. 10. Elsevier, 2023.","chicago":"Seiringer, Robert, and Jan Philip Solovej. “A Simple Approach to Lieb-Thirring Type Inequalities.” <i>Journal of Functional Analysis</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.jfa.2023.110129\">https://doi.org/10.1016/j.jfa.2023.110129</a>.","ama":"Seiringer R, Solovej JP. A simple approach to Lieb-Thirring type inequalities. <i>Journal of Functional Analysis</i>. 2023;285(10). doi:<a href=\"https://doi.org/10.1016/j.jfa.2023.110129\">10.1016/j.jfa.2023.110129</a>","mla":"Seiringer, Robert, and Jan Philip Solovej. “A Simple Approach to Lieb-Thirring Type Inequalities.” <i>Journal of Functional Analysis</i>, vol. 285, no. 10, 110129, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.jfa.2023.110129\">10.1016/j.jfa.2023.110129</a>.","ista":"Seiringer R, Solovej JP. 2023. A simple approach to Lieb-Thirring type inequalities. Journal of Functional Analysis. 285(10), 110129."},"file_date_updated":"2024-01-30T14:15:16Z","file":[{"date_updated":"2024-01-30T14:15:16Z","success":1,"access_level":"open_access","creator":"dernst","file_id":"14915","relation":"main_file","file_size":232934,"date_created":"2024-01-30T14:15:16Z","checksum":"28e424ad91be6219e9d321054ce3a412","file_name":"2023_JourFunctionalAnalysis_Seiringer.pdf","content_type":"application/pdf"}]},{"year":"2023","date_updated":"2025-04-15T08:24:50Z","title":"The phenuivirus Toscana virus makes an atypical use of vacuolar acidity to enter host cells","acknowledged_ssus":[{"_id":"EM-Fac"}],"doi":"10.1371/journal.ppat.1011562","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","quality_controlled":"1","isi":1,"_id":"14255","publisher":"Public Library of Science","intvolume":"        19","oa":1,"author":[{"first_name":"Jana","full_name":"Koch, Jana","last_name":"Koch"},{"last_name":"Xin","full_name":"Xin, Qilin","first_name":"Qilin"},{"full_name":"Obr, Martin","last_name":"Obr","orcid":"0000-0003-1756-6564","first_name":"Martin","id":"4741CA5A-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Alicia","last_name":"Schäfer","full_name":"Schäfer, Alicia"},{"last_name":"Rolfs","full_name":"Rolfs, Nina","first_name":"Nina"},{"last_name":"Anagho","full_name":"Anagho, Holda A.","first_name":"Holda A."},{"last_name":"Kudulyte","full_name":"Kudulyte, Aiste","first_name":"Aiste"},{"first_name":"Lea","full_name":"Woltereck, Lea","last_name":"Woltereck"},{"first_name":"Susann","last_name":"Kummer","full_name":"Kummer, Susann"},{"last_name":"Campos","full_name":"Campos, Joaquin","first_name":"Joaquin"},{"last_name":"Uckeley","full_name":"Uckeley, Zina M.","first_name":"Zina M."},{"last_name":"Bell-Sakyi","full_name":"Bell-Sakyi, Lesley","first_name":"Lesley"},{"first_name":"Hans Georg","last_name":"Kräusslich","full_name":"Kräusslich, Hans Georg"},{"first_name":"Florian Km","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4790-8078","last_name":"Schur","full_name":"Schur, Florian Km"},{"first_name":"Claudio","last_name":"Acuna","full_name":"Acuna, Claudio"},{"full_name":"Lozach, Pierre Yves","last_name":"Lozach","first_name":"Pierre Yves"}],"fulldoi":"https://doi.org/10.1371/journal.ppat.1011562","date_published":"2023-08-14T00:00:00Z","type":"journal_article","pmid":1,"date_created":"2023-09-03T22:01:14Z","external_id":{"isi":["001050846300004"],"pmid":["37578957"]},"article_number":"e1011562","month":"08","article_processing_charge":"Yes","department":[{"_id":"FlSc"}],"publication_status":"published","abstract":[{"lang":"eng","text":"Toscana virus is a major cause of arboviral disease in humans in the Mediterranean basin during summer. However, early virus-host cell interactions and entry mechanisms remain poorly characterized. Investigating iPSC-derived human neurons and cell lines, we found that virus binding to the cell surface was specific, and 50% of bound virions were endocytosed within 10 min. Virions entered Rab5a+ early endosomes and, subsequently, Rab7a+ and LAMP-1+ late endosomal compartments. Penetration required intact late endosomes and occurred within 30 min following internalization. Virus entry relied on vacuolar acidification, with an optimal pH for viral membrane fusion at pH 5.5. The pH threshold increased to 5.8 with longer pre-exposure of virions to the slightly acidic pH in early endosomes. Strikingly, the particles remained infectious after entering late endosomes with a pH below the fusion threshold. Overall, our study establishes Toscana virus as a late-penetrating virus and reveals an atypical use of vacuolar acidity by this virus to enter host cells."}],"volume":19,"scopus_import":"1","article_type":"original","day":"14","project":[{"_id":"26736D6A-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Structural conservation and diversity in retroviral capsid","grant_number":"P31445"}],"ddc":["570"],"publication":"PLoS Pathogens","language":[{"iso":"eng"}],"acknowledgement":"We acknowledge Elodie Chatre and the Imaging Platform Platim, SFR Biosciences, Lyon, as well as Vibor Laketa and the Infectious Diseases Imaging Platform (IDIP) at the Center for Integrative Infectious Disease Research (CIID) Heidelberg. The sand fly cell lines were supplied by the Tick Cell Biobank at the University of Liverpool. F.K.M.S. acknowledges support from the Scientific Service Units (SSUs) of ISTA through resources provided by the Electron Microscopy Facility (EMF).\r\nThis work was supported by CellNetworks Research Group funds and Deutsche Forschungsgemeinschaft (DFG) funding (LO-2338/3-1) and the Agence Nationale de la Recherche (ANR) funding (grant numbers ANR-21-CE11-0012 and ANR-22-CE15-0034), all awarded to P.-Y.L. This work was also supported by the LABEX ECOFECT (ANR-11-LABX-0048) of Université de Lyon (UDL), within the program “Investissements d’Avenir” (ANR-11-IDEX-0007) operated by the ANR and by the RESPOND program of the UDL (awarded to P.-Y.L) . C.A. was supported by the Chica and Heinz Schaller Research Group funds, NARSAD 2019 award, a Fritz Thyssen Research Grant, and the SFB1158-S02 grant. L.B-S. is supported by a United Kingdom Biotechnology and Biological Sciences Research Council grant (BB/P024270/1) and a Wellcome Trust grant (223743/Z/21/Z). F.K.M.S acknowledges support from the Austrian Science Fund (FWF, P31445). J.K. received a salary from the DFG (LO-2338/3-1) and then from the ANR (ANR-11-LABX-0048). The salary of Z.M.U. was partially covered by the DFG (LO-2338/3-1). S.K. received a salary from the DFG (SFB1129). We are grateful to the Chinese Scholarship Council (CSC; 201904910701), DAAD/ANID (57451854/62180003), the Rufus A. Kellogg fellowship program (Amherst College, Massachusetts, USA) for awarding fellowships to Q.X., J.C., and H.A.A., respectively.","issue":"8","oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"citation":{"ieee":"J. Koch <i>et al.</i>, “The phenuivirus Toscana virus makes an atypical use of vacuolar acidity to enter host cells,” <i>PLoS Pathogens</i>, vol. 19, no. 8. Public Library of Science, 2023.","chicago":"Koch, Jana, Qilin Xin, Martin Obr, Alicia Schäfer, Nina Rolfs, Holda A. Anagho, Aiste Kudulyte, et al. “The Phenuivirus Toscana Virus Makes an Atypical Use of Vacuolar Acidity to Enter Host Cells.” <i>PLoS Pathogens</i>. Public Library of Science, 2023. <a href=\"https://doi.org/10.1371/journal.ppat.1011562\">https://doi.org/10.1371/journal.ppat.1011562</a>.","short":"J. Koch, Q. Xin, M. Obr, A. Schäfer, N. Rolfs, H.A. Anagho, A. Kudulyte, L. Woltereck, S. Kummer, J. Campos, Z.M. Uckeley, L. Bell-Sakyi, H.G. Kräusslich, F.K. Schur, C. Acuna, P.Y. Lozach, PLoS Pathogens 19 (2023).","apa":"Koch, J., Xin, Q., Obr, M., Schäfer, A., Rolfs, N., Anagho, H. A., … Lozach, P. Y. (2023). The phenuivirus Toscana virus makes an atypical use of vacuolar acidity to enter host cells. <i>PLoS Pathogens</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.ppat.1011562\">https://doi.org/10.1371/journal.ppat.1011562</a>","mla":"Koch, Jana, et al. “The Phenuivirus Toscana Virus Makes an Atypical Use of Vacuolar Acidity to Enter Host Cells.” <i>PLoS Pathogens</i>, vol. 19, no. 8, e1011562, Public Library of Science, 2023, doi:<a href=\"https://doi.org/10.1371/journal.ppat.1011562\">10.1371/journal.ppat.1011562</a>.","ista":"Koch J, Xin Q, Obr M, Schäfer A, Rolfs N, Anagho HA, Kudulyte A, Woltereck L, Kummer S, Campos J, Uckeley ZM, Bell-Sakyi L, Kräusslich HG, Schur FK, Acuna C, Lozach PY. 2023. The phenuivirus Toscana virus makes an atypical use of vacuolar acidity to enter host cells. PLoS Pathogens. 19(8), e1011562.","ama":"Koch J, Xin Q, Obr M, et al. The phenuivirus Toscana virus makes an atypical use of vacuolar acidity to enter host cells. <i>PLoS Pathogens</i>. 2023;19(8). doi:<a href=\"https://doi.org/10.1371/journal.ppat.1011562\">10.1371/journal.ppat.1011562</a>"},"publication_identifier":{"issn":["1553-7366"],"eissn":["1553-7374"]},"file":[{"access_level":"open_access","success":1,"date_updated":"2023-09-06T06:41:52Z","file_size":4458336,"file_id":"14269","relation":"main_file","creator":"dernst","file_name":"2023_PloSPathogens_Koch.pdf","checksum":"47ca3bb54b27f28b05644be0ad064bc6","date_created":"2023-09-06T06:41:52Z","content_type":"application/pdf"}],"file_date_updated":"2023-09-06T06:41:52Z"},{"file":[{"content_type":"application/pdf","checksum":"4108b031dc726ae6b4a5ae7e021ba188","file_name":"2023_AJHG_Ojavee.pdf","date_created":"2024-01-30T13:20:35Z","file_id":"14912","relation":"main_file","file_size":2551276,"creator":"dernst","success":1,"access_level":"open_access","date_updated":"2024-01-30T13:20:35Z"}],"file_date_updated":"2024-01-30T13:20:35Z","citation":{"ista":"Ojavee SE, Darrous L, Patxot M, Läll K, Fischer K, Mägi R, Kutalik Z, Robinson MR. 2023. Genetic insights into the age-specific biological mechanisms governing human ovarian aging. American Journal of Human Genetics. 110(9), 1549–1563.","mla":"Ojavee, Sven E., et al. “Genetic Insights into the Age-Specific Biological Mechanisms Governing Human Ovarian Aging.” <i>American Journal of Human Genetics</i>, vol. 110, no. 9, Elsevier, 2023, pp. 1549–63, doi:<a href=\"https://doi.org/10.1016/j.ajhg.2023.07.006\">10.1016/j.ajhg.2023.07.006</a>.","ama":"Ojavee SE, Darrous L, Patxot M, et al. Genetic insights into the age-specific biological mechanisms governing human ovarian aging. <i>American Journal of Human Genetics</i>. 2023;110(9):1549-1563. doi:<a href=\"https://doi.org/10.1016/j.ajhg.2023.07.006\">10.1016/j.ajhg.2023.07.006</a>","ieee":"S. E. Ojavee <i>et al.</i>, “Genetic insights into the age-specific biological mechanisms governing human ovarian aging,” <i>American Journal of Human Genetics</i>, vol. 110, no. 9. Elsevier, pp. 1549–1563, 2023.","chicago":"Ojavee, Sven E., Liza Darrous, Marion Patxot, Kristi Läll, Krista Fischer, Reedik Mägi, Zoltan Kutalik, and Matthew Richard Robinson. “Genetic Insights into the Age-Specific Biological Mechanisms Governing Human Ovarian Aging.” <i>American Journal of Human Genetics</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.ajhg.2023.07.006\">https://doi.org/10.1016/j.ajhg.2023.07.006</a>.","apa":"Ojavee, S. E., Darrous, L., Patxot, M., Läll, K., Fischer, K., Mägi, R., … Robinson, M. R. (2023). Genetic insights into the age-specific biological mechanisms governing human ovarian aging. <i>American Journal of Human Genetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ajhg.2023.07.006\">https://doi.org/10.1016/j.ajhg.2023.07.006</a>","short":"S.E. Ojavee, L. Darrous, M. Patxot, K. Läll, K. Fischer, R. Mägi, Z. Kutalik, M.R. Robinson, American Journal of Human Genetics 110 (2023) 1549–1563."},"publication_identifier":{"issn":["0002-9297"],"eissn":["1537-6605"]},"tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","language":[{"iso":"eng"}],"issue":"9","acknowledgement":"This project was funded by an SNSF Eccellenza grant to M.R.R. (PCEGP3-181181) and by core funding from the Institute of Science and Technology Austria. K.L. and R.M. were supported by the Estonian Research Council grant 1911. Estonian Biobank computations were performed in the High-Performance Computing Center, University of Tartu. We thank Triin Laisk for her valuable insights and comments that helped greatly. We would like to acknowledge the participants and investigators of UK Biobank and Estonian Biobank studies. This project uses UK Biobank data under project number 35520.","ddc":["570"],"publication":"American Journal of Human Genetics","page":"1549-1563","volume":110,"abstract":[{"lang":"eng","text":"There is currently little evidence that the genetic basis of human phenotype varies significantly across the lifespan. However, time-to-event phenotypes are understudied and can be thought of as reflecting an underlying hazard, which is unlikely to be constant through life when values take a broad range. Here, we find that 74% of 245 genome-wide significant genetic associations with age at natural menopause (ANM) in the UK Biobank show a form of age-specific effect. Nineteen of these replicated discoveries are identified only by our modeling framework, which determines the time dependency of DNA-variant age-at-onset associations without a significant multiple-testing burden. Across the range of early to late menopause, we find evidence for significantly different underlying biological pathways, changes in the signs of genetic correlations of ANM to health indicators and outcomes, and differences in inferred causal relationships. We find that DNA damage response processes only act to shape ovarian reserve and depletion for women of early ANM. Genetically mediated delays in ANM were associated with increased relative risk of breast cancer and leiomyoma at all ages and with high cholesterol and heart failure for late-ANM women. These findings suggest that a better understanding of the age dependency of genetic risk factor relationships among health indicators and outcomes is achievable through appropriate statistical modeling of large-scale biobank data."}],"article_type":"original","day":"07","scopus_import":"1","department":[{"_id":"MaRo"}],"article_processing_charge":"Yes (via OA deal)","month":"09","publication_status":"published","date_created":"2023-09-03T22:01:15Z","external_id":{"isi":["001074842500001"],"pmid":["37543033"]},"date_published":"2023-09-07T00:00:00Z","type":"journal_article","pmid":1,"fulldoi":"https://doi.org/10.1016/j.ajhg.2023.07.006","intvolume":"       110","publisher":"Elsevier","oa":1,"author":[{"last_name":"Ojavee","full_name":"Ojavee, Sven E.","first_name":"Sven E."},{"full_name":"Darrous, Liza","last_name":"Darrous","first_name":"Liza"},{"full_name":"Patxot, Marion","last_name":"Patxot","first_name":"Marion"},{"last_name":"Läll","full_name":"Läll, Kristi","first_name":"Kristi"},{"first_name":"Krista","last_name":"Fischer","full_name":"Fischer, Krista"},{"first_name":"Reedik","last_name":"Mägi","full_name":"Mägi, Reedik"},{"last_name":"Kutalik","full_name":"Kutalik, Zoltan","first_name":"Zoltan"},{"id":"E5D42276-F5DA-11E9-8E24-6303E6697425","first_name":"Matthew Richard","orcid":"0000-0001-8982-8813","last_name":"Robinson","full_name":"Robinson, Matthew Richard"}],"corr_author":"1","_id":"14258","isi":1,"doi":"10.1016/j.ajhg.2023.07.006","date_updated":"2025-09-09T12:51:20Z","title":"Genetic insights into the age-specific biological mechanisms governing human ovarian aging","year":"2023","quality_controlled":"1","status":"public","has_accepted_license":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"publication_status":"published","article_processing_charge":"Yes (in subscription journal)","month":"08","department":[{"_id":"GradSch"}],"external_id":{"pmid":["37566743"],"isi":["001048165800001"]},"date_created":"2023-09-03T22:01:16Z","pmid":1,"type":"journal_article","date_published":"2023-08-11T00:00:00Z","fulldoi":"https://doi.org/10.1021/acs.jpclett.3c01707","oa":1,"author":[{"full_name":"Gamper, Jakob","last_name":"Gamper","first_name":"Jakob"},{"first_name":"Florian","id":"7499e70e-eb2c-11ec-b98b-f925648bc9d9","full_name":"Kluibenschedl, Florian","last_name":"Kluibenschedl"},{"first_name":"Alexander K.H.","last_name":"Weiss","full_name":"Weiss, Alexander K.H."},{"last_name":"Hofer","full_name":"Hofer, Thomas S.","first_name":"Thomas S."}],"publisher":"American Chemical Society","intvolume":"        14","isi":1,"_id":"14261","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","status":"public","has_accepted_license":"1","quality_controlled":"1","year":"2023","date_updated":"2023-09-06T11:04:31Z","title":"Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems","doi":"10.1021/acs.jpclett.3c01707","file_date_updated":"2023-09-06T07:32:39Z","file":[{"success":1,"access_level":"open_access","date_updated":"2023-09-06T07:32:39Z","file_id":"14272","relation":"main_file","file_size":4986859,"creator":"dernst","checksum":"637454e2b3a357498d8d622d241c4bf6","file_name":"2023_JourPhysChemistry_Gamper.pdf","date_created":"2023-09-06T07:32:39Z","content_type":"application/pdf"}],"publication_identifier":{"eissn":["1948-7185"]},"citation":{"ista":"Gamper J, Kluibenschedl F, Weiss AKH, Hofer TS. 2023. Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems. Journal of Physical Chemistry Letters. 14(33), 7395–7403.","mla":"Gamper, Jakob, et al. “Accessing Position Space Wave Functions in Band Structure Calculations of Periodic Systems - a Generalized, Adapted Numerov Implementation for One-, Two-, and Three-Dimensional Quantum Problems.” <i>Journal of Physical Chemistry Letters</i>, vol. 14, no. 33, American Chemical Society, 2023, pp. 7395–403, doi:<a href=\"https://doi.org/10.1021/acs.jpclett.3c01707\">10.1021/acs.jpclett.3c01707</a>.","ama":"Gamper J, Kluibenschedl F, Weiss AKH, Hofer TS. Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems. <i>Journal of Physical Chemistry Letters</i>. 2023;14(33):7395-7403. doi:<a href=\"https://doi.org/10.1021/acs.jpclett.3c01707\">10.1021/acs.jpclett.3c01707</a>","ieee":"J. Gamper, F. Kluibenschedl, A. K. H. Weiss, and T. S. Hofer, “Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems,” <i>Journal of Physical Chemistry Letters</i>, vol. 14, no. 33. American Chemical Society, pp. 7395–7403, 2023.","chicago":"Gamper, Jakob, Florian Kluibenschedl, Alexander K.H. Weiss, and Thomas S. Hofer. “Accessing Position Space Wave Functions in Band Structure Calculations of Periodic Systems - a Generalized, Adapted Numerov Implementation for One-, Two-, and Three-Dimensional Quantum Problems.” <i>Journal of Physical Chemistry Letters</i>. American Chemical Society, 2023. <a href=\"https://doi.org/10.1021/acs.jpclett.3c01707\">https://doi.org/10.1021/acs.jpclett.3c01707</a>.","apa":"Gamper, J., Kluibenschedl, F., Weiss, A. K. H., &#38; Hofer, T. S. (2023). Accessing position space wave functions in band structure calculations of periodic systems - a generalized, adapted numerov implementation for one-, two-, and three-dimensional quantum problems. <i>Journal of Physical Chemistry Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jpclett.3c01707\">https://doi.org/10.1021/acs.jpclett.3c01707</a>","short":"J. Gamper, F. Kluibenschedl, A.K.H. Weiss, T.S. Hofer, Journal of Physical Chemistry Letters 14 (2023) 7395–7403."},"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"acknowledgement":"Financial supports for this work via a PhD scholarship for J. Gamper issued by the Leopold-Franzens-University of Innsbruck (Vicerector Prof. Dr Ulrike Tanzer) are gratefully acknowledged. The computational results presented have been achieved (in part) using the HPC infrastructure of the University of Innsbruck.","issue":"33","language":[{"iso":"eng"}],"page":"7395-7403","ddc":["530","540"],"publication":"Journal of Physical Chemistry Letters","scopus_import":"1","day":"11","article_type":"original","abstract":[{"text":"In this work, a generalized, adapted Numerov implementation capable of determining band structures of periodic quantum systems is outlined. Based on the input potential, the presented approach numerically solves the Schrödinger equation in position space at each momentum space point. Thus, in addition to the band structure, the method inherently provides information about the state functions and probability densities in position space at each momentum space point considered. The generalized, adapted Numerov framework provided reliable estimates for a variety of increasingly complex test suites in one, two, and three dimensions. The accuracy of the proposed methodology was benchmarked against results obtained for the analytically solvable Kronig-Penney model. Furthermore, the presented numerical solver was applied to a model potential representing a 2D optical lattice being a challenging application relevant, for example, in the field of quantum computing.","lang":"eng"}],"volume":14},{"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"language":[{"iso":"eng"}],"acknowledgement":"We thank all members of the Hannezo group for discussions and suggestions, as well as Sound Wai Phow for technical assistance. This work received funding from the European Research Council under the EU Horizon 2020 research and innovation program Grant Agreement No. 851288 (E.H.), JSPS KAKENHI Grant No. 21H05290, and the Ministry of Education under the Research Centres of Excellence program through the MBI at NUS.","issue":"1","file":[{"creator":"dernst","file_size":2559520,"relation":"main_file","file_id":"14335","date_updated":"2023-09-15T06:30:50Z","access_level":"open_access","success":1,"content_type":"application/pdf","date_created":"2023-09-15T06:30:50Z","file_name":"2023_PRXLife_Boocock.pdf","checksum":"f881d98c89eb9f1aa136d7b781511553"}],"file_date_updated":"2023-09-15T06:30:50Z","citation":{"mla":"Boocock, Daniel R., et al. “Interplay between Mechanochemical Patterning and Glassy Dynamics in Cellular Monolayers.” <i>PRX Life</i>, vol. 1, no. 1, 013001, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/prxlife.1.013001\">10.1103/prxlife.1.013001</a>.","ista":"Boocock DR, Hirashima T, Hannezo EB. 2023. Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. PRX Life. 1(1), 013001.","ama":"Boocock DR, Hirashima T, Hannezo EB. Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. <i>PRX Life</i>. 2023;1(1). doi:<a href=\"https://doi.org/10.1103/prxlife.1.013001\">10.1103/prxlife.1.013001</a>","chicago":"Boocock, Daniel R, Tsuyoshi Hirashima, and Edouard B Hannezo. “Interplay between Mechanochemical Patterning and Glassy Dynamics in Cellular Monolayers.” <i>PRX Life</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/prxlife.1.013001\">https://doi.org/10.1103/prxlife.1.013001</a>.","ieee":"D. R. Boocock, T. Hirashima, and E. B. Hannezo, “Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers,” <i>PRX Life</i>, vol. 1, no. 1. American Physical Society, 2023.","short":"D.R. Boocock, T. Hirashima, E.B. Hannezo, PRX Life 1 (2023).","apa":"Boocock, D. R., Hirashima, T., &#38; Hannezo, E. B. (2023). Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers. <i>PRX Life</i>. American Physical Society. <a href=\"https://doi.org/10.1103/prxlife.1.013001\">https://doi.org/10.1103/prxlife.1.013001</a>"},"publication_identifier":{"issn":["2835-8279"]},"project":[{"call_identifier":"H2020","name":"Design Principles of Branching Morphogenesis","grant_number":"851288","_id":"05943252-7A3F-11EA-A408-12923DDC885E"}],"abstract":[{"text":"Living tissues are characterized by an intrinsically mechanochemical interplay of active physical forces and complex biochemical signaling pathways. Either feature alone can give rise to complex emergent phenomena, for example, mechanically driven glassy dynamics and rigidity transitions, or chemically driven reaction-diffusion instabilities. An important question is how to quantitatively assess the contribution of these different cues to the large-scale dynamics of biological materials. We address this in Madin-Darby canine kidney (MDCK) monolayers, considering both mechanochemical feedback between extracellular signal-regulated kinase (ERK) signaling activity and cellular density as well as a mechanically active tissue rheology via a self-propelled vertex model. We show that the relative strength of active migration forces to mechanochemical couplings controls a transition from a uniform active glass to periodic spatiotemporal waves. We parametrize the model from published experimental data sets on MDCK monolayers and use it to make new predictions on the correlation functions of cellular dynamics and the dynamics of topological defects associated with the oscillatory phase of cells. Interestingly, MDCK monolayers are best described by an intermediary parameter region in which both mechanochemical couplings and noisy active propulsion have a strong influence on the dynamics. Finally, we study how tissue rheology and ERK waves produce feedback on one another and uncover a mechanism via which tissue fluidity can be controlled by mechanochemical waves at both the local and global levels.","lang":"eng"}],"volume":1,"article_type":"original","day":"20","ec_funded":1,"publication":"PRX Life","ddc":["570"],"date_published":"2023-07-20T00:00:00Z","type":"journal_article","fulldoi":"https://doi.org/10.1103/prxlife.1.013001","month":"07","article_processing_charge":"Yes","department":[{"_id":"EdHa"}],"publication_status":"published","date_created":"2023-09-06T08:30:59Z","article_number":"013001","_id":"14277","date_updated":"2025-04-14T07:52:27Z","title":"Interplay between mechanochemical patterning and glassy dynamics in cellular monolayers","year":"2023","doi":"10.1103/prxlife.1.013001","has_accepted_license":"1","status":"public","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Physical Society","intvolume":"         1","corr_author":"1","author":[{"orcid":"0000-0002-1585-2631","id":"453AF628-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel R","full_name":"Boocock, Daniel R","last_name":"Boocock"},{"full_name":"Hirashima, Tsuyoshi","last_name":"Hirashima","first_name":"Tsuyoshi"},{"first_name":"Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","last_name":"Hannezo","full_name":"Hannezo, Edouard B"}],"oa":1},{"date_created":"2023-09-06T08:39:25Z","citation":{"ieee":"M. C. Ucar, “Source data for the manuscript ‘CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.’” Zenodo, 2023.","chicago":"Ucar, Mehmet C. “Source Data for the Manuscript ‘CCR7 Acts as Both a Sensor and a Sink for CCL19 to Coordinate Collective Leukocyte Migration.’” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.8133960\">https://doi.org/10.5281/ZENODO.8133960</a>.","apa":"Ucar, M. C. (2023). Source data for the manuscript “CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.” Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.8133960\">https://doi.org/10.5281/ZENODO.8133960</a>","short":"M.C. Ucar, (2023).","ista":"Ucar MC. 2023. Source data for the manuscript ‘CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration’, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.8133960\">10.5281/ZENODO.8133960</a>.","mla":"Ucar, Mehmet C. <i>Source Data for the Manuscript “CCR7 Acts as Both a Sensor and a Sink for CCL19 to Coordinate Collective Leukocyte Migration.”</i> Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.8133960\">10.5281/ZENODO.8133960</a>.","ama":"Ucar MC. Source data for the manuscript “CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.” 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.8133960\">10.5281/ZENODO.8133960</a>"},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.8133960"}],"month":"07","article_processing_charge":"No","department":[{"_id":"EdHa"}],"fulldoi":"https://doi.org/10.5281/ZENODO.8133960","related_material":{"record":[{"id":"14274","relation":"used_in_publication","status":"public"}]},"oa_version":"Published Version","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"date_published":"2023-07-11T00:00:00Z","type":"research_data_reference","oa":1,"corr_author":"1","author":[{"last_name":"Ucar","full_name":"Ucar, Mehmet C","id":"50B2A802-6007-11E9-A42B-EB23E6697425","first_name":"Mehmet C","orcid":"0000-0003-0506-4217"}],"ddc":["570"],"publisher":"Zenodo","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","day":"11","date_updated":"2026-06-18T17:34:48Z","abstract":[{"text":"The zip file includes source data used in the manuscript \"CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration\", as well as a representative Jupyter notebook to reproduce the main figures. Please see the preprint on bioRxiv and the DOI link there to access the final published version. Note the title change between the preprint and the published manuscript.\r\nA sample script for particle-based simulations of collective chemotaxis by self-generated gradients is also included (see Self-generated_chemotaxis_sample_script.ipynb) to generate exemplary cell trajectories. A detailed description of the simulation setup is provided in the supplementary information of the manuscipt.","lang":"eng"}],"year":"2023","title":"Source data for the manuscript \"CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration\"","doi":"10.5281/ZENODO.8133960","_id":"14279"}]